LOCUS       DARGEY010000001        89476 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.001, whole genome shotgun sequence.
ACCESSION   DARGEY010000001 DARGEY010000000
VERSION     DARGEY010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 89476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 89476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..89476
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.001"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(51..1088)
                     /locus_tag="SF008_000001"
     CDS             complement(51..1088)
                     /locus_tag="SF008_000001"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HEG8232326.1"
                     /translation="MKKLFICCLFIGVCMKKAKSRIAILGTGGTIAGFIDSTIATTGY
                     AAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFAEGIDG
                     VVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVVNKE
                     AKNKGVMVAINDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVIKAHT
                     KNAPFDVSKLTSLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKD
                     VLKELLKKGLKVVVSSRVVAGCVAVSDSDEKLGFISAEDLNPQKARVLLMLALTKTSD
                     PKKIQEYFLKY"
     gene            complement(1142..2713)
                     /gene="recJ"
                     /locus_tag="SF008_000002"
     CDS             complement(1142..2713)
                     /gene="recJ"
                     /locus_tag="SF008_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEG8232327.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDILPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGKDEKHLKLVLTKENKTIEALFFNFDKEPELNQNISLLGSISKNE
                     FRGMVTPQFVVKEIL"
     gene            complement(2700..4331)
                     /locus_tag="SF008_000003"
     CDS             complement(2700..4331)
                     /locus_tag="SF008_000003"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEG8232328.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESSEVFKDVSGILVAGGFGYRGVEGKIKAIQYARENKIPFLGICLGMQLALVEFA
                     RNVLKLKDVNSSEFNEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEVKSVKERHRHRYEANPKYRADFEKYGLIVSGESKGLIEAVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVICSFIKAAINYEDN"
     gene            4451..5074
                     /locus_tag="SF008_000004"
     CDS             4451..5074
                     /locus_tag="SF008_000004"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HEG8232329.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEAEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQEHKFIFEHCLHKDIE"
     gene            5194..6579
                     /locus_tag="SF008_000005"
     CDS             5194..6579
                     /locus_tag="SF008_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine transporter"
                     /protein_id="HEG8232330.1"
                     /translation="MDKQFFQDFLMLSQAHTIATLAILCVVFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFALQYLANFPDAEEASNILWYSETKHWFAFVSSVFVAFIKMLVVPL
                     VSICIIKVIIEIDKNIKISSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIYEG
                     DKQIREIQTFSNIILGLIPSNIITAINKENIIAIVIFSFFIGISAKKISKKEEYEQAF
                     KSFHNFILTFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYIA
                     MFIMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNS
                     AIANFVASIGTTTGLNGCAGYFPALAAVFVAFATHTHIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLAGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKEIYNS"
     gene            complement(6618..8987)
                     /locus_tag="SF008_000006"
     CDS             complement(6618..8987)
                     /locus_tag="SF008_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HEG8232331.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLREYF
                     QKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVVIDGGYEKPAKKISTLDSIEGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWG
                     SDEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(9003..10331)
                     /locus_tag="SF008_000007"
     CDS             complement(9003..10331)
                     /locus_tag="SF008_000007"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG8232332.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLIDDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEAIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ISHAKELLEHAKEVISYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDAIFKRTFK"
     gene            10409..11311
                     /locus_tag="SF008_000008"
     CDS             10409..11311
                     /locus_tag="SF008_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG8232333.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNKILNGLVELIVYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRLDKETSGLILIAKNKKAQIDLKSLFEKKLVQKEYLALAHGKIE
                     ENFIVDKAINLTKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLHYKNHTILGDPLYGLSKQQIESILDEKLNPKERLKLTGALRLCLHSYRLKF
                     QYKNQNFDINSKINIKEIFNNSIK"
     gene            11424..12302
                     /locus_tag="SF008_000009"
     CDS             11424..12302
                     /locus_tag="SF008_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEG8232334.1"
                     /translation="MKFVNFIQGQKPNLGVLNSSGKIVSFDDLGIETNDMNEFIIHFD
                     KFKHKLTDLDSKIAYEIPQENYLAPIIEPRQDIICLGINFLDHAKESAKFKGEKFEER
                     EYPVYFGKRCNQATAPFGDIPLHADVTSQLDYECELAFILSKDAYKIKAKDAKDYIFG
                     YTIINEISARELQKRHKQFYRAKSLEGSTIMGPYITSVDEISYPPKLQLQSYVNDELR
                     QNSNTQLFIFDIAYVLEELSAGMLLKAGSIISMGTPSGVGMGLNPPTFLKSGDKVRCV
                     IENLGELCNKIKNINY"
     gene            12366..13280
                     /locus_tag="SF008_000010"
     CDS             12366..13280
                     /locus_tag="SF008_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEG8232335.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAKLGKSLYM
                     DKSLSKDGKVSCNTCHRLDQHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLAEQATVPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENIALAVAE
                     FEKTLITPNSPFDRYLSGDQNAISTQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
     gene            13270..15048
                     /locus_tag="SF008_000011"
     CDS             13270..15048
                     /locus_tag="SF008_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG8232336.1"
                     /translation="MTNKKSSFLIKFIILSTLVLAFILVLLGIIFNNYSSSKDNKELI
                     NIVQQLEISDEKINSVFQNSFNFINYDPSVQAIKKMQENFTKLKTFGIDINKAEEIFN
                     AKLIQLNYFKSANSIAVNSKLYLFELAKNYFEELEQNHETNKNNYKTMSSMLSVLSTE
                     NILQKTTLNQLNNLMKEIKNDTKSENLQLFLKHYNMIVKQISIMQDNSSIYENNSLMK
                     ELKQLNTFTQNTIEQSNLFKFYIALAVFGITLVLFVFFILLTLKKVIMPIHTLEKLSA
                     NLASKEANLHSRLNIDPKSELGQSAQYINSFISTVQNSIIEAIENAKSSHQNSQKLKN
                     NSMMLENSSNSQHEQIQGVKEITHVLDDHINLAGNLAQESIENMQDMHILMDKVELTL
                     SELVNLINENNEKEQNIVANMDNLTQSADNIIEITNSIKDIADQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVGQLADKTSKSLLNINATVNTIVQQINDNKALMDLIHDSMKETS
                     SKTNDLQQELVNSMHKLESSIESTQTMKDKSMEVKDKMLILGTNIDKVNELANSVKDL
                     SCEINNISQNVLNGASKLSEKLSSFQ"
     gene            15154..15321
                     /gene="dba"
                     /locus_tag="SF008_000012"
     CDS             15154..15321
                     /gene="dba"
                     /locus_tag="SF008_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HEG8232337.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            15333..16859
                     /gene="dsbI"
                     /locus_tag="SF008_000013"
     CDS             15333..16859
                     /gene="dsbI"
                     /locus_tag="SF008_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HEG8232338.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFISTGIPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDELKITNEQTINFDKAINTLDYINN
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSASIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGESLGRGRLDTVRAKFNHVASMTTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     ALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(16880..17554)
                     /gene="queC"
                     /locus_tag="SF008_000014"
     CDS             complement(16880..17554)
                     /gene="queC"
                     /locus_tag="SF008_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HEG8232339.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            17630..18856
                     /locus_tag="SF008_000015"
     CDS             17630..18856
                     /locus_tag="SF008_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HEG8232340.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINERILPFVPEGLRGEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKALKYCDKIAAYIEAGLSISYGVKSKELESGFLGMHEFFKENPTIDG
                     VNFFEICESLREYFKI"
     gene            18948..19472
                     /locus_tag="SF008_000016"
     CDS             18948..19472
                     /locus_tag="SF008_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YagU family protein"
                     /protein_id="HEG8232341.1"
                     /translation="MKKYFQKRYTLAFFIGILAGIFGAIVKWGWEVPFPPRNPNVFWP
                     ADALERVTPPKIFLEQLGLPTDWIYMFSGMQMPLSIFIVHVGFSIIFGVAYCMIAEKW
                     HRITMWQGAVFGFFVYLFAHVIVMPLIAEVPPLSEIPFDEHLSEIFGHIVWLWGMEIV
                     RRDIRNRITKEIEE"
     gene            complement(19484..21160)
                     /gene="ilvD"
                     /locus_tag="SF008_000017"
     CDS             complement(19484..21160)
                     /gene="ilvD"
                     /locus_tag="SF008_000017"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEG8232342.1"
                     /translation="MRSDAIKKGHLKAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNNYAKIIKDEICKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSREIIANSIE
                     TVMNAHQLDALICVPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYEAKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLKERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAEQGCVI
                     KTAGIIGERKFKGKAVCFNSQDEAIKGIIKGKVQKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANVSEEEIAKRKKEFALPQKEVSSRWLRMYQKLVSNASKGAVLDME"
     gene            21320..21967
                     /locus_tag="SF008_000018"
     CDS             21320..21967
                     /locus_tag="SF008_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="desulfoferrodoxin FeS4 iron-binding
                     domain-containing protein"
                     /protein_id="HEG8232343.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTAVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVSAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            22032..22271
                     /locus_tag="SF008_000019"
     CDS             22032..22271
                     /locus_tag="SF008_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HEG8232344.1"
                     /translation="MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAIL
                     EYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITIE"
     gene            22304..22878
                     /locus_tag="SF008_000020"
                     /pseudo
     CDS             22304..22878
                     /locus_tag="SF008_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
     gene            complement(22879..24324)
                     /locus_tag="SF008_000021"
     CDS             complement(22879..24324)
                     /locus_tag="SF008_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HEG8232345.1"
                     /translation="MGNARGFLDFKRMDFKKIAPKERVLNYKEFTIPLDKKEQEIQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLIYRSLWKEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGTSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAVIGS
                     GPAGLACANTLNSLGYKVSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKNGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADTAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTHVECVEANDLKREFKEGKA
                     INVEISNSKKTYKADLVLLAMGFSGCEEAIAKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
     gene            complement(24334..28824)
                     /gene="gltB"
                     /locus_tag="SF008_000022"
     CDS             complement(24334..28824)
                     /gene="gltB"
                     /locus_tag="SF008_000022"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HEG8232346.1"
                     /translation="MDLENILENNQSIGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFKTQELGFELPKKGDYAVAQMFLS
                     PNTDAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKPSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEVLKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIVNKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKHANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     INFMYFIAEELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIKLEIVGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGQVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHITYTDSKKAKDILEKFDKKDFFKVMPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     QK"
     gene            complement(28958..30265)
                     /locus_tag="SF008_000023"
     CDS             complement(28958..30265)
                     /locus_tag="SF008_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HEG8232347.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALVAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSVSLNDVTNTMYFAAICMIAGLFLALFVFYRKSREYQE
                     VEIAKVDLENLEMTRKEWGVLAGLVLTLILQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNADKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
     gene            30469..31707
                     /locus_tag="SF008_000024"
     CDS             30469..31707
                     /locus_tag="SF008_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HEG8232348.1"
                     /translation="MKQNNQKEDRRNFLKNIGFGLLGISVLSNFSFENFLGSKALAKE
                     LPDFKIEGKKDLIYHGEKPLTAETEIYALDSDFTKPENFFVRNNGLPPSLETIKERLH
                     KGWTLEIDGESIINKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYG
                     AVACGRWTGVRLKDILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDE
                     TLIAWAYEGKDIPLVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVP
                     VNPVKPGDFNYKGEMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEV
                     YISNDYGVTWTKAKVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLA
                     QWNPGGYINNACHRVNIYGV"
     gene            31710..32051
                     /locus_tag="SF008_000025"
     CDS             31710..32051
                     /locus_tag="SF008_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HEG8232349.1"
                     /translation="MKKIILILALFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASRKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAILLQNKTH"
     gene            complement(32077..34386)
                     /gene="gyrB"
                     /locus_tag="SF008_000026"
     CDS             complement(32077..34386)
                     /gene="gyrB"
                     /locus_tag="SF008_000026"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEG8232350.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEG
                     GISQFVTDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEANYIFDKIKDRGLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(34415..35482)
                     /locus_tag="SF008_000027"
     CDS             complement(34415..35482)
                     /locus_tag="SF008_000027"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEG8232351.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     RASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDKINFVGTDTKRLAIYTLEKANNQEFSFSIPKKAIMEMQKLFYEKIEIFYDQNML
                     IAKNENFEFFTKLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEKMRLYF
                     NKDKIIFEGISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNE
                     PNSAFIVKSQGLSMIIMPMIL"
     gene            complement(35642..36964)
                     /gene="dnaA"
                     /locus_tag="SF008_000028"
     CDS             complement(35642..36964)
                     /gene="dnaA"
                     /locus_tag="SF008_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEG8232352.1"
                     /translation="MNPSQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPN
                     ELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQNNKSTKIDIAHIKAQSTILN
                     PSFTFESFVVGDSNKYAYGACKAITHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD
                     HIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP
                     QLANYFEMKDHTAISHNVKKITEMIENDASLKAKIEELKNKILVKSQS"
     gene            37060..37542
                     /gene="ruvC"
                     /locus_tag="SF008_000029"
     CDS             37060..37542
                     /gene="ruvC"
                     /locus_tag="SF008_000029"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HEG8232353.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
     gene            37746..40280
                     /gene="flgE"
                     /locus_tag="SF008_000030"
     CDS             37746..40280
                     /gene="flgE"
                     /locus_tag="SF008_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEG8232354.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTNYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFID
                     PGMHIPAAKSTEVAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQ
                     FYTTSKNAVEVTEKGVDAGSLFNANGQGLNLREGQGIWVSYADAKFTTDKPANVNVFD
                     PNNHTNQNGSIFWGDKDNAVILDITLNGVNIQNANIRSLDEAIAYINTFTAPTDTRDG
                     TGVKAVKKADGSGIEFVNDNADGTTDNMKNINLTVNQANTAGERHAITWNAGNNNFTA
                     TSAKNNANSVWIPTAANVNGNAESIQIITAHKYIYSSTPVDIPPMYNPDGGPNFIANG
                     NQRPTDPASANYWDAIQGSLKNATERTFRTTEDLRELLQRDARYGVDYDGNGSSGYDA
                     NDINQAVKVVVTENGNFAISNANETSTIPANAGAGAGAATTNPKNMSFNITAYSNKQG
                     TVSTNDAFTKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVK
                     QSTTQDGGNEWQMIIRVPEPAEINTTGEGPTNIIVGTARFNNDGSLANYTPKTINFSP
                     NNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNI
                     LGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTGGRGEMKT
                     SALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ"
     gene            40526..40909
                     /gene="queF"
                     /locus_tag="SF008_000031"
     CDS             40526..40909
                     /gene="queF"
                     /locus_tag="SF008_000031"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HEG8232355.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPDKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
     gene            41047..41691
                     /locus_tag="SF008_000032"
     CDS             41047..41691
                     /locus_tag="SF008_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEG8232356.1"
                     /translation="MNKKLLSIIASTTLFSNLALADENSGFFIGADAAWMHAQVKSEL
                     KHKNTKQNFNGDISGNIPSFGLKLGYRLNENHRIYAGYNYSDEFSDFIKTPKIQIEGD
                     FTTHKFLTGYDFTPKLFEKTRAVLGVYGGYARTDLTLKTSFLSLSQNFDGYFYGAKIG
                     ALYDLTPHNEIELGFKAEQIHYNSRNFYQNKVGSNFYDPKQTNYGVYLGYNYKF"
     gene            complement(41727..42356)
                     /locus_tag="SF008_000033"
     CDS             complement(41727..42356)
                     /locus_tag="SF008_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232357.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTDSQICEKLLDDVEKYFIGGG"
     gene            42676..44211
                     /gene="leuA"
                     /locus_tag="SF008_000034"
     CDS             42676..44211
                     /gene="leuA"
                     /locus_tag="SF008_000034"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEG8232358.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLGINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRALDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTLIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGMATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQIYEIISPSAIGIHDNRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYENEEENE
                     FVIEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPVLKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGLSTDVIEASAQAFVSAYNAIYRSLKVEER
                     KMA"
     gene            44208..45284
                     /gene="leuB"
                     /locus_tag="SF008_000035"
     CDS             44208..45284
                     /gene="leuB"
                     /locus_tag="SF008_000035"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEG8232359.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFISQKYNFSFEFNEAKI
                     GGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERITHIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     AKSYLNTDEMGDCILEILKENNNG"
     gene            45271..46683
                     /gene="leuC"
                     /locus_tag="SF008_000036"
     CDS             45271..46683
                     /gene="leuC"
                     /locus_tag="SF008_000036"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEG8232360.1"
                     /translation="MIMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSVDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVGPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYAKDLILYLIAQYGTAKGTGYAIEFCGELIKNLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGAKYD
                     ESITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALSYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGRKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            46685..47287
                     /gene="leuD"
                     /locus_tag="SF008_000037"
     CDS             46685..47287
                     /gene="leuD"
                     /locus_tag="SF008_000037"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEG8232361.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLEIVDELKKSQDKNIEISLLEKRVFFKDKIFS
                     FDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(47267..47797)
                     /locus_tag="SF008_000038"
     CDS             complement(47267..47797)
                     /locus_tag="SF008_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8232362.1"
                     /translation="MQNTIIQKAVNKDLNSILEITKDALNAMKTMNFHQWDENYPNEI
                     VFQEDIQAQELYVFKENDEILGFICINEKFEPEFYKQVIFNKNYDDKAFYLHRLAVKQ
                     KAKGKGVAQKLLNFCENFALENHKASLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(47825..47900)
                     /locus_tag="SF008_000039"
     tRNA            complement(47825..47900)
                     /locus_tag="SF008_000039"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(47865..47867),aa:Val,seq:gac)
     gene            complement(47904..47979)
                     /locus_tag="SF008_000040"
     tRNA            complement(47904..47979)
                     /locus_tag="SF008_000040"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(47944..47946),aa:Ala,seq:ggc)
     gene            complement(48119..49075)
                     /locus_tag="SF008_000041"
     CDS             complement(48119..49075)
                     /locus_tag="SF008_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002932162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HEG8232363.1"
                     /translation="MLQSRLLMNLRGIGISFIPRYFFQINLDKIFNDILKYNIKDLEE
                     IQTRVKYYNQINEFFTPTAKEKIGKFPFKSTSYAFDAYEISKYFKDEFLWNKEFGDVR
                     HTFKEATICKSRSLENNINNILLKLDKNRHFCFLKDNINYENKKDIAIFRGAVYQNHR
                     KEFFDSYFGRTFCDIGDTSKQPSQWEKNFLNKKEQMKYKFIISLEGNDVASNLKWAMN
                     SNSLVLAPKITCETWFMEGTLKPNYHFALIDNENLSAVIEYFKSRPKDALEIINNAHQ
                     YIKKFLDKKKEFHIGILVLTKYFYYSRQLELNKKRDILELIK"
     gene            complement(49189..49276)
                     /locus_tag="SF008_000042"
     tRNA            complement(49189..49276)
                     /locus_tag="SF008_000042"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(49240..49242),aa:Ser,seq:gga)
     gene            49411..49487
                     /locus_tag="SF008_000043"
     tRNA            49411..49487
                     /locus_tag="SF008_000043"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:49445..49447,aa:Met,seq:cat)
     gene            complement(49501..49599)
                     /locus_tag="SF008_000044"
     CDS             complement(49501..49599)
                     /locus_tag="SF008_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232364.1"
                     /translation="MTMLDIFEIIFITAVVIIGFGGIVFVVTKEKK"
     gene            complement(49596..50666)
                     /gene="rlmN"
                     /locus_tag="SF008_000045"
     CDS             complement(49596..50666)
                     /gene="rlmN"
                     /locus_tag="SF008_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEG8232365.1"
                     /translation="MKELVNILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     NLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDA
                     EGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQM
                     NLGVLLAISLHAVNDELRTELMSINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGGLYKRPSLENAIKFQDLLSNKGVTCTI
                     RESKGLDISAACGQLKERAKEQ"
     gene            complement(50690..51226)
                     /locus_tag="SF008_000046"
     CDS             complement(50690..51226)
                     /locus_tag="SF008_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEG8232366.1"
                     /translation="MIVCAGGNENFSFAKAIGIGLVESAFHLSQLYFKEKPSKLIFIG
                     TCGLYDKGEILEIYRSSHAFNVEFSKISHAFYTPAKYEICLEKENVSRETIKINSSNY
                     ICQNSKAAKEFSKLGFFAENMEAFSVLSVAKNLNIDAECILCATNFCNENAHEDFIKN
                     HQKAKEKLEEYLKKYHYI"
     gene            51306..52106
                     /gene="rsmA"
                     /locus_tag="SF008_000047"
     CDS             51306..52106
                     /gene="rsmA"
                     /locus_tag="SF008_000047"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEG8232367.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICER
                     KILFDVDPQCFNPPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDLYLKIYDKLKDEYGRKQRDK"
     gene            52075..54069
                     /locus_tag="SF008_000048"
     CDS             52075..54069
                     /locus_tag="SF008_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEG8232368.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKENSENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRVSHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFARTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKATKTLINKPRVFSYGLVADKHDHAFSKDMAEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            54104..54865
                     /locus_tag="SF008_000049"
     CDS             54104..54865
                     /locus_tag="SF008_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEG8232369.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVQFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYEKLRDFLKFNEIRY"
     gene            55063..55374
                     /gene="rpsJ"
                     /locus_tag="SF008_000050"
     CDS             55063..55374
                     /gene="rpsJ"
                     /locus_tag="SF008_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEG8232370.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            55384..55959
                     /locus_tag="SF008_000051"
     CDS             55384..55959
                     /locus_tag="SF008_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEG8232371.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTVKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            55956..56570
                     /gene="rplD"
                     /locus_tag="SF008_000052"
     CDS             55956..56570
                     /gene="rplD"
                     /locus_tag="SF008_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEG8232372.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVTEVNAYLVSVFNAVIIEKSALESITKEG"
     gene            56573..56854
                     /locus_tag="SF008_000053"
     CDS             56573..56854
                     /locus_tag="SF008_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEG8232373.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKVKRFRGRLGQRNDYKKFYVKLPEGVSLENTEA"
     gene            56856..57686
                     /gene="rplB"
                     /locus_tag="SF008_000054"
     CDS             56856..57686
                     /gene="rplB"
                     /locus_tag="SF008_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEG8232374.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVSAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            57688..57969
                     /gene="rpsS"
                     /locus_tag="SF008_000055"
     CDS             57688..57969
                     /gene="rpsS"
                     /locus_tag="SF008_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEG8232375.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            57980..58423
                     /gene="rplV"
                     /locus_tag="SF008_000056"
     CDS             57980..58423
                     /gene="rplV"
                     /locus_tag="SF008_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEG8232376.1"
                     /translation="MSKALIKFIRLSPTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVVVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     AKAEVKAEEKKTVAKKAPAAKKTTTTKAPAKKTTSTKKATAKKES"
     gene            58423..59124
                     /gene="rpsC"
                     /locus_tag="SF008_000057"
     CDS             58423..59124
                     /gene="rpsC"
                     /locus_tag="SF008_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEG8232377.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            59127..59552
                     /gene="rplP"
                     /locus_tag="SF008_000058"
     CDS             59127..59552
                     /gene="rplP"
                     /locus_tag="SF008_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEG8232378.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            59539..59724
                     /gene="rpmC"
                     /locus_tag="SF008_000059"
     CDS             59539..59724
                     /gene="rpmC"
                     /locus_tag="SF008_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEG8232379.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            59734..59985
                     /gene="rpsQ"
                     /locus_tag="SF008_000060"
     CDS             59734..59985
                     /gene="rpsQ"
                     /locus_tag="SF008_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEG8232380.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            59985..60353
                     /gene="rplN"
                     /locus_tag="SF008_000061"
     CDS             59985..60353
                     /gene="rplN"
                     /locus_tag="SF008_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015106543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEG8232381.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            60353..60586
                     /locus_tag="SF008_000062"
     CDS             60353..60586
                     /locus_tag="SF008_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEG8232382.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            60590..61135
                     /gene="rplE"
                     /locus_tag="SF008_000063"
     CDS             60590..61135
                     /gene="rplE"
                     /locus_tag="SF008_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEG8232383.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            61137..61322
                     /locus_tag="SF008_000064"
     CDS             61137..61322
                     /locus_tag="SF008_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HEG8232384.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            61332..61727
                     /gene="rpsH"
                     /locus_tag="SF008_000065"
     CDS             61332..61727
                     /gene="rpsH"
                     /locus_tag="SF008_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEG8232385.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGT
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            61806..62342
                     /gene="rplF"
                     /locus_tag="SF008_000066"
     CDS             61806..62342
                     /gene="rplF"
                     /locus_tag="SF008_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEG8232386.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            62352..62708
                     /locus_tag="SF008_000067"
     CDS             62352..62708
                     /locus_tag="SF008_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEG8232387.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKAKKIEQAVFDRNGYVYHG
                     VIAALAESLRENGIRL"
     gene            62720..63163
                     /gene="rpsE"
                     /locus_tag="SF008_000068"
     CDS             62720..63163
                     /gene="rpsE"
                     /locus_tag="SF008_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEG8232388.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            63168..63560
                     /locus_tag="SF008_000069"
     CDS             63168..63560
                     /locus_tag="SF008_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEG8232389.1"
                     /translation="MNLTKAAGSTRKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFESIKSVHKISKSV
                     NKIKLIGASAKDLVPKIKDENISVTGSK"
     gene            63560..64825
                     /gene="secY"
                     /locus_tag="SF008_000070"
     CDS             63560..64825
                     /gene="secY"
                     /locus_tag="SF008_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEG8232390.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYIELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNGYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSSYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
     gene            complement(64853..66124)
                     /locus_tag="SF008_000071"
     CDS             complement(64853..66124)
                     /locus_tag="SF008_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8232391.1"
                     /translation="MNDKIYKFHPNDTKMDKKIIQITEKSGFKVAVFSMAAMTMLGSV
                     VISSALPAINRHFEELLTQSGATLASSFTLAHLDILVRLVLTIPAIFVVILSPFAGIL
                     MDKFGKLKFILPAMVVWTISGISGFFLNDIYAILTSRAIFGMATAFIMTGASALLGDY
                     YSRGGFNRRENALSLQGFFCAVGGAVFISIAGFVSSYSWRYPFLVYGLGILITLMAII
                     YLFEPRKFKFYNHTKIETKTNYWQFFPIYFIGFFIMVVYYISPTQLPYYIEEHLGLDP
                     KYIGISMSVSALCYGFFSLSYRYIIKFLSIKTIYVLTLFIVSCSFLLLFLVDSFFTVL
                     IALALLGMGGGIMLVNNTAYLFSICPENARSRAYGILASCIFLGQFLSPIISQPIVRQ
                     MGLVDAFLIWSIVIFIVCIVFLFLKQKPRIN"
     gene            66319..68421
                     /gene="topA"
                     /locus_tag="SF008_000072"
     CDS             66319..68421
                     /gene="topA"
                     /locus_tag="SF008_000072"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEG8232392.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKSAIENALKNPRKLNMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEAYAISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQANFGKDYLPSKANVY
                     TTKTKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPAISQTQ
                     NVFVKNDRAVFKISGRKILFDGYYKVYGDMDKDKILPNFKIGQNLKVQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVTIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNESENTAAKAKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGTFLECLKCKIKKEMKD"
     gene            68423..69259
                     /locus_tag="SF008_000073"
     CDS             68423..69259
                     /locus_tag="SF008_000073"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HEG8232393.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLEYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLESSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLSADEALKIVRDTKEALPQ
                     TVIMVAGGREVVLQERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            69240..70415
                     /locus_tag="SF008_000074"
     CDS             69240..70415
                     /locus_tag="SF008_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEG8232394.1"
                     /translation="MHQSVIDPQGLIDLKILIVIALCLLFSPHIAKILRLPLSATEII
                     LGAIIAYFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMDKEVAKKSFFYIFL
                     LYALSSLIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDEKLYSALILTALFEAVIVMSMIKFLSNSKK"
     gene            70530..71798
                     /locus_tag="SF008_000075"
     CDS             70530..71798
                     /locus_tag="SF008_000075"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEG8232395.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIVATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELKPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHAHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            71878..72642
                     /locus_tag="SF008_000076"
     CDS             71878..72642
                     /locus_tag="SF008_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HEG8232396.1"
                     /translation="MLNLDKFLEIAINASNQASKAILEERKNFKTWEKEDKSPITSAD
                     LASNKILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCVM
                     ISLVHDNRSVLSLIQNPSKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNH
                     LSKEDEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGDFLINQNG
                     GFMGDFSKKYILYSPLNYKSSPFICVSSRNFLQDFL"
     gene            72682..73446
                     /locus_tag="SF008_000077"
     CDS             72682..73446
                     /locus_tag="SF008_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232397.1"
                     /translation="MKMRYCFILFLSLVLSSNLLANNFSQKKVIKIEKSADSFEVIDL
                     NQNVANPNLNQQKALFDSSTLIEKKSQITKDKDIDFAIVLTSRKNFGYFLDGFRVSDK
                     EFSTLFAKNLIQSLRLDWVNSAANGIYQSPKTLSYFSPKDAKLINVSPFLTQEKDKAK
                     MYAKFTDYVVVVNLQDFYVNITNYFITTSKEGVASVNFKIISTSNGKILAAKNAKLNL
                     ILKDQDTKQNYQDIVNQMPKMLASVIDNEIKKLKIY"
     gene            complement(73454..74230)
                     /locus_tag="SF008_000078"
     CDS             complement(73454..74230)
                     /locus_tag="SF008_000078"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEG8232398.1"
                     /translation="MIIDFKKYSSVRIGNEFEVLVLDQICDFDGFLIGGANNLLVSPK
                     PKNIGILGDGFNFIQILDQNKDFIHLRIGCKTKSSKIYRFAKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATSQGEILRENINFDYRFCPLNMPFFWAEFKLNFG
                     FDTLKDEALKNARSNQPNGASFGSIFKNPKNDFAGRLIEAVGLKGFNKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIKLARKKVFEEFGINLENEVIII"
     gene            complement(74227..74496)
                     /gene="fliQ"
                     /locus_tag="SF008_000079"
     CDS             complement(74227..74496)
                     /gene="fliQ"
                     /locus_tag="SF008_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HEG8232399.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            complement(74508..75368)
                     /locus_tag="SF008_000080"
     CDS             complement(74508..75368)
                     /locus_tag="SF008_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HEG8232400.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENAVLSGEVDAGVLIHESILDFDQSLYVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDAIKIERDLTNAVKIADANRKILAPMLME
                     RKLIRVDEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDFLI
                     PSEYEEARNS"
     gene            75474..76505
                     /gene="recA"
                     /locus_tag="SF008_000081"
     CDS             75474..76505
                     /gene="recA"
                     /locus_tag="SF008_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEG8232401.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            76505..77749
                     /gene="eno"
                     /locus_tag="SF008_000082"
     CDS             76505..77749
                     /gene="eno"
                     /locus_tag="SF008_000082"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEG8232402.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEALIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIEFESDEYLGEKL"
     gene            77815..78018
                     /locus_tag="SF008_000083"
     CDS             77815..78018
                     /locus_tag="SF008_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232403.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDTLLSLENTKEELNKKIIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            78008..78670
                     /gene="cgpA"
                     /locus_tag="SF008_000084"
     CDS             78008..78670
                     /gene="cgpA"
                     /locus_tag="SF008_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HEG8232404.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDQNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYTISRFKSPDPSKVLDVSVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSKMISPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMIN
                     LL"
     gene            78670..79518
                     /locus_tag="SF008_000085"
     CDS             78670..79518
                     /locus_tag="SF008_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HEG8232405.1"
                     /translation="MRFVFLICCACLVFANEILLLSKFDKQDFNSKDFNAYLMSEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFAIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFQISTCTLKNRLAVLEEYLQKYPSAYIKIISQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPYEKGRSKNATKLKPYDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDEDRKNPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRDENP"
     gene            79561..79638
                     /locus_tag="SF008_000086"
     tRNA            79561..79638
                     /locus_tag="SF008_000086"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:79596..79598,aa:Pro,seq:tgg)
     gene            79663..79739
                     /locus_tag="SF008_000087"
     tRNA            79663..79739
                     /locus_tag="SF008_000087"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:79697..79699,aa:His,seq:gtg)
     gene            79743..79819
                     /locus_tag="SF008_000088"
     tRNA            79743..79819
                     /locus_tag="SF008_000088"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:79777..79779,aa:Arg,seq:tcg)
     gene            79834..79910
                     /locus_tag="SF008_000089"
     tRNA            79834..79910
                     /locus_tag="SF008_000089"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:79868..79870,aa:Arg,seq:tct)
     gene            79915..79999
                     /locus_tag="SF008_000090"
     tRNA            79915..79999
                     /locus_tag="SF008_000090"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:79949..79951,aa:Leu,seq:tag)
     gene            80174..80590
                     /locus_tag="SF008_000091"
     CDS             80174..80590
                     /locus_tag="SF008_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232406.1"
                     /translation="MKKLGLVLAVLVALNVSAFADLIVINKKDLVPVSASEMQNKYFQ
                     ESIKSTLTEPLFKKATFYEADIVAKVDPRTYNSTQAIIQKEYSDKSNYVYYKQVLILT
                     SDGKRARLSTLSCEIASFDKKGYLCGGTADHNYSIK"
     gene            80889..81326
                     /locus_tag="SF008_000092"
     CDS             80889..81326
                     /locus_tag="SF008_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HEG8232407.1"
                     /translation="MKKTILTILFLLTLTQAKEIQIYESPTCGCCDLWADYMKAKGYE
                     VSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIAWLLENKPKDVIGI
                     SALGMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
     gene            complement(81336..81839)
                     /gene="traF"
                     /locus_tag="SF008_000093"
     CDS             complement(81336..81839)
                     /gene="traF"
                     /locus_tag="SF008_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HEG8232408.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKAQNFALVFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKA
                     WADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEK
                     EIKKVKS"
     gene            complement(81800..82288)
                     /locus_tag="SF008_000094"
     CDS             complement(81800..82288)
                     /locus_tag="SF008_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG8232409.1"
                     /translation="MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLIS
                     LL"
     gene            complement(82285..82938)
                     /locus_tag="SF008_000095"
     CDS             complement(82285..82938)
                     /locus_tag="SF008_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8232410.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            complement(82935..84053)
                     /locus_tag="SF008_000096"
     CDS             complement(82935..84053)
                     /locus_tag="SF008_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEG8232411.1"
                     /translation="MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDIKLSKELKAYGANVMISPKQDENFISNTEYEKIKENLKARALTPFLYDFLNLGSTS
                     GVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKAGNELQIYNP
                     NNGKSIKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKAKT
                     QAISNEFIDAKPISSVSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            complement(84043..85335)
                     /locus_tag="SF008_000097"
     CDS             complement(84043..85335)
                     /locus_tag="SF008_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8232412.1"
                     /translation="MMLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNIT
                     ALAPFLEGKITIENSQQKALIYGTYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKD
                     DSNEIMLGEDFAKNNKLKLGDTIKLIGENNQSKEAKIVGILLHANPKMSNKIIAPLNL
                     AQDLLNKQGLYSSAEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVDSIASQ
                     ISDGLPGADAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRK
                     KEIGLLKVLGANTFQIYLIFASENLIVALFAALFGFIFGTALSQIISLSIFGYFIDIA
                     FVALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            complement(85322..86725)
                     /locus_tag="SF008_000098"
     CDS             complement(85322..86725)
                     /locus_tag="SF008_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HEG8232413.1"
                     /translation="MSIYFVHFLISVLPLSILMAFITPNKKYIFKSFLVVFLGFLFGY
                     FAFFIAAQFLKTENLIFNFDFVFIGLLLVSFIFYFWKKIEILNFILLGILSFCTALHY
                     YFLSQDFPIFTSSLIDSEGISSLGFIALALLVCILIFFFLKWQKNFNQKTSFMLFLLL
                     ILIESDKALANILLTLMRNSIIETHAFLVSFVGKSNYFGVFGIYVYLIFITFLAFLSL
                     KIRKKNISKKQILDINYRKNEAKTSLINRYFSSVFISCVISFCIVLYFFMVSSKPLTI
                     DEPKEILPDKNGKFIFDIALLRDNKLHRFAYISAEGKVIRFFLINKREDKDSPVAVFD
                     ACMICGDMGYIKKDGQLICISCNVRIFLPSVGKSGGCNPIPLKYEYDGKKITIDVKDV
                     IAGSNYFSQIKEIEVQDPVSKTKVINTQAPFSYSYKGIAYYFSNQNNYEEFKKDPTKY
                     VEENEAQFLIQRRNDVG"
     gene            complement(86808..87347)
                     /locus_tag="SF008_000099"
     CDS             complement(86808..87347)
                     /locus_tag="SF008_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HEG8232414.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGDPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
     gene            complement(87344..89434)
                     /locus_tag="SF008_000100"
     CDS             complement(87344..89434)
                     /locus_tag="SF008_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family iron permease"
                     /protein_id="HEG8232415.1"
                     /translation="MKIFKIIFLIIGIFLSSSAFARVDDYINEANLIKDMLKQSIETY
                     KKGDNLGAKKLSEDAYFQHFENMEGPIGRNIGRKTITMERKFVNLRRMYKDEAPLTQI
                     NALIDSLYYDLDEVAPILQNGYRLKAEASDINYDKAKAEKSSLEANAKREADAEALIA
                     QMMGVDKKDLAQSSLTTQAPIPVNNDTSKLIDDNASTDLQAAAAMDVRLQFILDNIST
                     KFSQAANAFKEKNYQTSKDFLNDALFSDYRNTKVEILVNKFTKAGNDQKIQQAIRTLI
                     RQINDAKIDEKGLRDGLDNIEEQIFDVFLQIPNSELSSLQISGFNDETKGKDYAKVSN
                     DIKLALDEILKNYDGFSTSMVDDLQGIYLDIFEASGMENKIGAVDSGLKLKIESLFSK
                     GMALIKASADKKELEATFNDLEQLIASSVDKIQDSTPYSLFIWALGIILREGLEALII
                     IVAIVSYLVQSGNKNRLNIAYSALFTGVILSFITAFGVSWLFKENAGQSRELIEGITM
                     LIAVLLLFYVGFWLLSNAQNKKWTSFIKQGAIDAISNNSAKTLWITVFLAVYREGAET
                     VLFYQALLFDAKTSTDFGAVFGGLGLGILILIVLYFLLKAGAIRIPVKQFFYITSYII
                     FYMVFVFTGKGIAELIEGKVIIPGLIPMNFEPILWLGIYPYYETLIPQFIVLIMLIIG
                     ILITKQISKKGVKS"
BASE COUNT        31016 a        14250 c        14635 g        29575 t
ORIGIN      
        1 cttgacttag ggaagataag ttccctaagt ttagaaatat ttaaaaaatt ttaatatttt
       61 aaaaaatact cttgaatttt tttaggatca cttgtttttg taagtgctaa cataagcaaa
      121 actcttgctt tttgaggatt taaatcttca gcactaataa aacctaattt ttcatctgaa
      181 tcactcacag caacacaacc tgctacaacc cttgaactta caacaacctt aagccctttt
      241 tttaaaagct cttttaaaac atctttttga tttttgtgta tacttcctgc tccacttcct
      301 gcaacaacta tgcccttagt tccatgttca aataaagctt ttgcagcgac accactacca
      361 tcatttgaat agctataaag aatatctact tttggcaaac ttgtgagttt gcttacatca
      421 aaaggagcgt tttttgtgtg agctttaata acattattat agaaaaagac tttaccatct
      481 actatataac ccaaatcccc aaaatcagga gaagagaaag catcaacatt taaactatga
      541 gtttttacta cgcctctagc gcttaaaatt ttatcattta tagctaccat aacaccctta
      601 ttcttagctt ctttattgac aactaatgcc actgcattat aaagattttt cggaccatcc
      661 gcacttatag cagttgatgg acgcatagcg ccaactagaa ctacgggctt atcactttta
      721 atggttaaat ttaaaaaata agcagtttct tccatagtat cagtaccatg agttatcacc
      781 acaccgtcta tcccctcagc aaaaagctta gcaatttttt tagcaagcct taaccaaatt
      841 tcatcacaca tatttgaact atcaatattt gctatttgct cccaactaat atctgctaaa
      901 tctctaattt gcggaactgc tttaattaat acatctatat caatggctcc ggccgcatat
      961 cctgttgtag caatagtgct atcaatgaag cctgctatcg ttccgcctgt tcctaaaata
     1021 gcaatccttg atttagcttt tttcatacat actcctataa aaagacaaca tataaataat
     1081 tttttaatct cttgtatatt aattttttaa tgttattaat gcaaattata agtaaaaatt
     1141 tttataaaat ctctttaaca acaaactgtg gagttaccat tcccctaaat tcattcttag
     1201 aaatacttcc aagcaaagaa atattttgat tcaattctgg ctctttatca aaattaaaaa
     1261 ataaagcttc tatggtttta ttttccttag ttaaaacaag ctttaagtgt ttttcatctt
     1321 tacctagaag ttttttattt tttacacaaa gattttctaa aacaaaaaaa ggtcgtggat
     1381 ttttatgtcc aaaaggttca aaagattcta aaatttcaag catttcaaaa tcaatttcgc
     1441 taggttctaa gattcctaaa atttcatctg tatccaaaaa ttcactttca gaaatttgcg
     1501 aacattcttt tttgatttta tttttaaatt gttcaaaatt ttcagagttt aaactgattc
     1561 cagcagcacc tttatggcca ccataattgc ttaatataga atttgtctta gaaattaaag
     1621 ctaaaatatc aatcttgcca acacttcttg cgctgccttt taagtgttct tcattttgag
     1681 aaaatacaaa agcaggttta ttaaaatgtt tagctaaacg acttgccaca atccctaaaa
     1741 caccttcatg ccaatttaaa cccgatacca caatacaaga atcgttttca tcgatttgat
     1801 ttaaactatc ttcaaaaagc tgtttttctt catctttacg actttcatta aaactaacaa
     1861 tttgctctag atattctaaa gctttattaa aatctttagt gtgtaaaaat tcataagaaa
     1921 tacttgcatc atccattctt ccagcactat ttataagcgg agcaattaaa aatcctatat
     1981 tatcaagagc aaatttatcc ttttgataat aatgcttaat agcccgaaaa gcagcccttt
     2041 tagatttgtt aatatgatct ataccacgcc ttactaaagc acgatttaaa tctctaagtt
     2101 ccatcatatc tgcaacaatt gcaatcgcca aaagttctaa aaatttacac atgtcatatt
     2161 taagcttgca cacctctttt aaagccgcta tcaaatacca tgcgacttga gctccacaaa
     2221 tttcaatttc tggaaaatca caatcttttt gctttggatt gataatggca aaagcatcag
     2281 gtaaaatatc ttgaggcata tgatgatcag tgataatcaa atctatattt ttttctttac
     2341 agagtttggc tgcttcaaga gcagctattc cattatctac tgttattatt aaatttacat
     2401 caagttcgtt gatgatctca gcatttaatc catatccatc tttaaaacga ttcggaattc
     2461 ttataatata atcaaaacct atatcatcga aaaattctgc cataataaca caagaaatga
     2521 ttccatcaac atcataatct cctactatag cgactttctc atttttttct acagcttctt
     2581 tgatgcgatt agctgcttta tatgcatcct ttaaacagca tggcaaaggc agatcacaaa
     2641 gtttggtatg caaatctttt tcaaagcgtg aagccaaaat ttttttaatt tcatttttat
     2701 taattatctt catagtttat agctgccttg ataaaactgc aaatcacagg attaacatgc
     2761 tcaagtcttg atgtaaattc tggatgaaac tgcacagcca agaaaaaagg atgacagtta
     2821 agctcaactg cttcaatcaa tcctttgctt tcaccactta caatcaaacc gtatttttca
     2881 aaatctgctc tatattttgg atttgcttca tagcgatgac gatggcgttc ttttacactc
     2941 tttacttcat tataaacctt agccaaaagg gatttttcct tgatatcaca tttataagcc
     3001 cctaaacgca tagttccacc taaaggagtt tttgcagtac gaatttgttt ttctccattt
     3061 gtatccataa attcatcaat caaataaacc acaggatttt ggcatttttc attaaattca
     3121 cttgaattta catctttaag ttttaataca tttctagcaa attccaccaa agcaagctgc
     3181 atacctaaac aaattcctaa aaaaggaatt ttattttctc ttgcgtattg aatggctttt
     3241 atcttacctt ctacaccacg atatccaaat cccccagcaa ccaaaattcc actcacatct
     3301 ttaaatactt cagaactttc catattttca agtttttcac tatctaccca ttttaactcc
     3361 actttagtat ctagggctgc acctgcatgt ataatagctt cagtaaggct tttataactt
     3421 tcttttaaat ccacatattt gcctacaaaa gcgattttaa cttcattgct tggagctata
     3481 actcttttta ccaaagagtc ccaattttcc atattaggtt ttaaattttt caaatccaaa
     3541 atttcagcaa tagggcttaa aatatcttgc tttaaaaaat taagtggaat ttgataaata
     3601 ctagccgcat caacactttc tatcacgcaa tttttttcca ccccgcaaga aatagcaatt
     3661 ttatctttta aatctctatc aagagctttt tcactacgac aaataatcat atcaggacta
     3721 atgcctatgc gccttaactc gcctacacta tgttgagttg gctttgtttt taattcccct
     3781 gcagccttaa taaaaggtac tagagtaaga tgaatattca tagcattatt tttacccact
     3841 tccaaacgca aagcacgaat agcttctaaa aaaggcaagc cttctatatc cccaacagtt
     3901 ccgcctattt caacgataag tatatctttg ccttctcctg cttttttaat gcgatctttg
     3961 atttctccta ctatatgagg gataacttga atggttttgc caagatattc tccacgcctt
     4021 tctttttcaa tcacactttg ataaacccgt cctgtagtga agttattatc ttgagataaa
     4081 ctctcatcca aaaaacgctc ataatgcccc aaatcaagat ccgtttctgc tccatcatca
     4141 gttacaaaaa cctctccatg ctcaaaagga ctcatagtgc ctggatcaac attgatataa
     4201 ggatcagctt ttaaaatact cactttaagc cctgaatttt ttaaaagtgt tgcgatagaa
     4261 gcagcggcta tccctttacc caaagaactt aaaactccac ctgttacaaa aatatatttt
     4321 gtttgtttca ttgacaataa gccttatttt tttatctaat tatagcttga taaaactttt
     4381 tatttcatta gaattttaag taaaaaatgc aagaattaca aaaaatattt ttatcaaaaa
     4441 aggaataagc atgcaaatca ctttactttt tcacactcca ttatctgttt gttctcatgc
     4501 aacaagaact tgttggcaaa gctttgaaaa aggcgattgc ggtggcgaaa aagataaaga
     4561 acttatcgat cgcgtgggta ataaattcaa acacgcttca accttagaac atctaaacta
     4621 tactttttat atacaaggaa tttcaagagc ttgcttacaa gaagttgcaa gacaccgtca
     4681 cactagtcct agtgtaaaaa gcacgcgtta taccttaaaa gaacttcgca atgaagctga
     4741 atttaaaata ggagattttg aaaatgcaag ccgttatctt gtgctttgtg gtaatgaaga
     4801 ggttgataac gcaagcatta aagccttaga aaatttacgc actattttac aaaaaagcat
     4861 tagtctagat atagccaaat actgcttacc agaaagctat aaaaccgaac ttacactaac
     4921 gattaatgca agaagtttac aaaattttat atctttgcgt agttcaaaat cagctctttg
     4981 ggagattaga aatttagcaa atgctttatt tgaagcctta ccacaagaac acaaatttat
     5041 atttgaacat tgcctacata aagatataga ataaatcata ctaattttat cttatttaaa
     5101 atatttttat gctaccattt ataaaatcaa gctttatgca agtatatttt catatacctt
     5161 gtgcttgatt atagtttctt ataaggactt tttatggata aacaattttt tcaagatttt
     5221 ctaatgcttt cacaagctca tactatagct actcttgcta tactttgtgt tgttttttac
     5281 gcattaaaaa aaatgcggga tataaaaatc aatttttctc ttcgcatgct atttgcgctt
     5341 ttaatgggtt tggggtttgg ttttgctttg caatatttgg caaattttcc agatgctgaa
     5401 gaagcaagca atattctttg gtatagtgaa acaaaacatt ggtttgcatt tgtaagttct
     5461 gtttttgtag cttttataaa aatgctagtt gttcctcttg taagcatttg cattataaaa
     5521 gtaattatag aaattgataa aaatatcaaa atatcttcct tgcttggaat aagtcttttt
     5581 tggatactct ttagcacagc catagctgca accttgggta tatttttagg ttatagtttt
     5641 gatttaggaa gtaattttgc tatatatgaa ggagataaac aaattcgcga aattcaaact
     5701 ttttcaaata ttatactagg gctaatacct agcaacatca ttacagctat taataaagaa
     5761 aatattatag ctattgtcat tttttctttt tttataggaa ttagtgctaa aaaaatttct
     5821 aaaaaagaag agtatgaaca agcctttaaa agttttcata attttatcct aaccttttat
     5881 aatattatga tgaacatgac tgctacagtc attagattta tgccttatgc tgtagtttgt
     5941 atgatggcta atgtgctttt aagcaatggt tttgaagcta tcaaaacagc tggacttttt
     6001 ataatgctta tttatatagc catgtttata atgtttgggg tgcatttttt acttcttgct
     6061 tcacaagggt taaaccctat aaaatatgca aaaaaagcct ttcctgtatg gttatttgca
     6121 tttagctcaa gatcttcttt aggcactttg cctatgacca cttcaacttt gcaaaataaa
     6181 tttggagtta attcagctat agctaatttt gtagcatcta taggtacaac aacaggactt
     6241 aatggttgtg cgggatattt tccagcttta gcggcagttt ttgtagcttt tgctacacat
     6301 acacatattg attttacatt tgctttaatg atagttttgg tagctgttat tggatccttg
     6361 ggtatagctg gggtacctgg aagtgcaact atggcagctt ctattatgct agcagggatt
     6421 ggatttggta ataattttgt catgctaagt ttgattttag ccatagatcc tattatagat
     6481 atggcaagaa cagcaagcaa tgtctcagga gctatgactt cggcactttg tactgcaaaa
     6541 aatctaaaag ctctagataa agaaatttac aattcttaat cttttaaaac ccaatgcttt
     6601 tcattgggtt ttagtattta ttggcaacct tcacattcta tgctacgatc tgcaacattg
     6661 actttttcac tatcagggct ttcgcttctt agataataag tagattttac tccgagctcc
     6721 caagcgagtt gataaatttc atttaaatat cccccacttg ctttatcaag tgataaaaag
     6781 atatttaaac tctgcccttg atcgatccat ttaccacgca cagcagcagc ctttacaaga
     6841 attttttgat caagttcata ggctggagta tagtattgcc aagtatcaag gcttaaattt
     6901 ggcacaacaa caggtatcat accacttaaa ttttgttcaa accactttct tttgtaaaca
     6961 ggttctatag tctgcgtagt acccaccaag atagaaatag aagaagtagg cgcaatggcc
     7021 atcaaataac catttctcat accatctttt ttaacttttt ctctaagttt aacccagtcg
     7081 cattcacttt gatcaaataa gccttctctt aaagttaaag ctttagcctt aggacttgct
     7141 acatcaatag gaaaaatccc cttgctccaa tttgatcctt caaaatcttc ataagaacct
     7201 ttttcaagag ctaaatttga actcgcatta atagcctcaa agctaatttg ctccataatc
     7261 tcatcgattt tatttaaatg ctcatcgctt ccccaatgaa tcttagcctc agcaagcatt
     7321 tgtgcctcgc ccataactcc aagacctatg gcacgagatt ttaaatttgt atcttttact
     7381 tttctatgag gataaaaatt taaatcaatt acattatcaa gcatacgaat agctgttgga
     7441 acaacacgct ctatatcttc tttagtatat actttgctaa gatttatact tgctaaatta
     7501 caaacggctg tttttccatc atttttatat ttttccacta tataaacttt attaccttca
     7561 atactatcta aagttgagat ttttttggct ggtttttcat atcccccatc gatcacaacc
     7621 ttttgctctt catcaaaatg aagctcatct ccattttcaa aaactacttt aatttgataa
     7681 taatttggct cggtattttg aaaaatttca gtacataaat ttgaacttct aataattcct
     7741 acatgagcat ttggatttgc tctgttggca ctatctttaa aacataaaaa tggcaagcct
     7801 gtttcaaaat aatttagcaa aattttcttc caaagctctt tagcttctac gatttctttg
     7861 gtaatgcttt catctttttc atattcttca tagcgttttt caaaagcttc accatacaaa
     7921 tcacacaaat ccgctgtatc tgcaggatca aaaagagtcc atttatcatt agctcttact
     7981 ctcttcatga aaagatcatt gatccataaa gcagggaaaa gttcatgagc acggcgtctt
     8041 tcttcacctg aatttttacg caaatcgata aaatcactta tatccatgtg ccaaggttct
     8101 atataaacgg ctatagctcc ttttctggtt cctagttgat ctactgccac agcaatatcg
     8161 ttggtaattt tcaagaaagg tataatccct cctgcggcat ttttatgccc atctatgctt
     8221 ccacccatag cacgcacttt agaccaatcc caacctatac caccaccaaa tttagaaagc
     8281 aaagccattt cttggtaaga atcaaaaata ccttcaatat tatcaggggt tgatcctata
     8341 taacaagaac taagctgatg gcgcgttgtt cttgcattag ataaagtcgg agttgcaagc
     8401 atgagttcaa atttagaaat aagatcgtaa aatttcttcg cccattcttg aggattaaat
     8461 tcattctgcg ctaaaaacat cgcaatggcc ataaacattt gttgaggaag ttctataggc
     8521 atacctttac tatctttaat caagtatcta tcatataaag ttttaatacc aagataagta
     8581 aattgcatat cgcgttcagg tttaatataa gcatttaaat catctaaatc atatttttct
     8641 ttaagaccaa gtaaaattct tccttctttt tcaccctttt gaaaatactc acgcaaatga
     8701 ttatagcgat tcataccatt aactttttta tataaatcaa ataaaaaaag tctagctgca
     8761 acaaaggtcc aatttggaca atcaatatct atcttatcta ctgcagtttt aattaaagtt
     8821 ttttgaattt cttcagttga aattccatca cgaaattgaa tctttgcatc aagttcaagt
     8881 tcgcttaaat tcacaccttc taaatctttt acagcatcag aggtgcattt tttgatctta
     8941 gaaacatcca attcttctgt acgaccattt cttttaataa ctttcattgc cttccttgct
     9001 ttttatttaa atgttctttt aaaaattgca tcaacatttt ttgtatagta gttataatcg
     9061 aaacattttc ttacatcctc ttcgctcaaa ctttttctta aatcttcatc gcttaaaagc
     9121 gctaacaaaa acaaactttc atttttttca ttgatagcag ccttgccatt ttgcaaatct
     9181 gcccaaactt tcatagcgtt tctttgaact attttataag cttcttcacg gctaatgcct
     9241 ttaaatggaa gttctaaaag caccctccct gaaaatacaa gcccgcctgt aagatttaaa
     9301 tttttcatca tattttcagg ataaaccaaa agcttatcaa tcaaatttgt aagacgcata
     9361 agcataaaat cagccgtgat aaaagcatca ggcaaaataa atctttcaac actagaatga
     9421 gatatatctc tttcatgcca aagtgcaaca ttttccaaag ctggagttac aaaagatcta
     9481 agcacacgac aaagtcctgt gatattttca cttaaaacag gatttctttt atgtggcata
     9541 gctgaacttc ctttttgtcc tacactaaaa tactcctcag cctcataaac ttcagttctt
     9601 tgaaaatgtc ttatggctac agcgatttgc tcacaacttg aagctaaaat cgcaatagca
     9661 gaaataacct gagcataacg atctctttgg atcacttgat ttgaaacagg agcggcctta
     9721 agacctaaat ttttacaaac ttcttcttca aattctaaag gagcatgagc aaaatttccc
     9781 attgcaccgc tgatttttcc atagcttatc acttcttttg catgttctaa aagctctttt
     9841 gcatgcgaaa tttcatcata ccaaatagct aacaccaaac caaaagtaat aggttctcca
     9901 tgaattccat gacttcttcc taccattaag gtgtttttat gctccaaagc acgctttttg
     9961 atcgcttcta aaagcaaaga aacatcttct aaaataagct ccaaactctc ttttatctgt
    10021 aaagcaacag ctgtatctat acaatcagaa cttgtcattg cataatgcac aaaacgactc
    10081 tcttctccca aactttcact tacacttgta agaaaagcta taacatcatg ttttgtggtt
    10141 ttttctattt cgtctattct tgcaatatca aattttgcat ttttaagaat tttttcgcag
    10201 tctgtgtcat caatgagacc gagtttgttc caagctttta cagcggctaa ttctactttt
    10261 aaccacgcat cgtattttgc ttgcatgtcc cattttttag ccatgatttc tctgctatat
    10321 ctttcaacca tctttgaaac ctttttagct ataattttat attttaaaaa acagaaatta
    10381 tatcaaatta tcctaagaaa gttattaaat ggcctacata aaaataaaac tctcaaacaa
    10441 tggaaaaaag gcgtttcaag tccttatgga aaatttaaaa attagcataa atgaagcaca
    10501 aaaactcata gacaaaaaaa gacttttttg tgatggaatt ttagtagaag aaaagaataa
    10561 aattttaaat ggtttagtag agcttatagt ctatgaaaac aatcccaaag gagtagaaat
    10621 tgtctttgaa aatgaagact ttgccatact tgaaaaagaa agtgggatct taagccatcc
    10681 aaatggtaga cattgcaaat acagtcttag tgatgaaatt tggcatcttt ggggaaaaga
    10741 agcttgcgta gcacacaggc tcgataaaga aacgagcgga cttatactta tagccaaaaa
    10801 taaaaaagct caaattgatc ttaaaagctt gtttgaaaaa aaactagttc aaaaagaata
    10861 ccttgctcta gctcatggaa aaatagaaga aaattttata gttgataaag ctataaattt
    10921 aactaaaaac tacgatgatg taaaaacaag aatgcaaatt tgcaaagaag gaaaacaagc
    10981 tatcactgaa tttgaaattt tagaatactt tcctaaaatc aacgctactc ttttactttg
    11041 taaaccctta acaggcagac aacatcaaat aagagtgcat ttacactata aaaatcatac
    11101 cattttaggc gatccacttt atgggcttag caaacaacaa atcgaaagta ttttagatga
    11161 aaaattaaat cctaaagaac gcttaaaact tacaggtgcc ttgcgtttgt gtttgcattc
    11221 ttatcgtttg aaatttcaat ataaaaatca aaattttgat atcaactcaa aaataaacat
    11281 aaaagaaatt ttcaacaatt ccataaaata aaatgatgtt tcactacgct acaatcaatc
    11341 acttttttac caaattttaa aacaaaaaaa taattcttgc taaaacttta agtataatta
    11401 aataaaaaag cgagattttc caaatgaaat ttgttaattt tatacagggt caaaaaccca
    11461 atctaggagt actaaattct agtggaaaaa ttgtaagttt tgatgatctt ggcattgaaa
    11521 ctaacgatat gaatgaattt attatccatt ttgataaatt taaacacaaa cttacagact
    11581 tggattctaa aatagcctat gaaattccac aagaaaatta tctagcccct attatagaac
    11641 ctcgtcaaga tattatatgt cttgggatta attttttaga tcatgccaaa gaatctgcca
    11701 aatttaaggg tgaaaaattt gaagaaagag aatatcctgt atattttgga aaacgctgca
    11761 atcaagctac ggcacctttt ggcgatatac ctttacatgc agatgtaact tctcagcttg
    11821 attatgaatg tgagcttgca tttattttaa gtaaagatgc ttataaaatc aaagctaaag
    11881 atgcaaaaga ttatatcttt ggctatacta ttatcaatga aatttcagct cgcgaacttc
    11941 aaaaacgcca caaacaattc taccgagcaa aaagtcttga aggtagcact ataatgggac
    12001 cttatatcac aagcgtagat gaaatttctt atcctcctaa actccaactt caaagctatg
    12061 tcaatgatga actacgccaa aactctaaca ctcaattgtt tatttttgat attgcttatg
    12121 tcttagaaga acttagcgca ggcatgcttt taaaagctgg aagtattata tctatgggaa
    12181 ctcctagtgg agtaggtatg gggttaaatc cacctacttt tttaaaatca ggagataaag
    12241 tacgttgcgt catagaaaat ttaggagaac tttgcaataa aataaaaaat atcaattatt
    12301 aaacaattta ctaaaattac actataatgg cattttaaaa acttaaatta aggcagaaat
    12361 ttaccatgaa aaaaataata atgattttat gtttatctta tgcaaatata gtctttgcag
    12421 tagatatgat aacccctatt ccaaattcca tctcttatga taaagaaaaa gctaaacttg
    12481 gaaaaagtct ttatatggat aaaagtttat ccaaagatgg aaaagtttcg tgcaatactt
    12541 gccataggct tgatcaacac ggcgttgatg gacttgaatt ttcaatagga gttgataatc
    12601 aactcgataa accctttaac actcctacaa cctttaattc tgtatttaat tttgtgcaat
    12661 tttggaatgg tagagctaaa gatttagcag aacaagctac agtacctttt ttcaatccta
    12721 aagaaatggg gctaagtcct gaacttcttt tacaaaaagt taattcaaat gaaaattatg
    12781 taaaaacttt taaaaaactt tatggagaag ttacggtaga aaacatagcc cttgcagttg
    12841 ctgaatttga aaaaacctta atcacaccaa attctccttt tgatcgctat cttagcgggg
    12901 atcaaaatgc tatttcaact caagctaaaa aaggttacga agattttaaa gctaatggct
    12961 gcatctcttg ccatcaaggt caaaatatag gtgggaatat gtttcaaaaa atcggtattt
    13021 ttgaagaata cccaaaccaa gaagatttag ggcgctatga aatcacaaaa agagaagctg
    13081 ataaaatggt atttaaagtt cctagtctta gaaatatagc caaaaccgca ccttattttc
    13141 atgatggatc tatacctact ttagatgctt gtgttcagtt tatggcttac tatcaactag
    13201 gaaaattttt agatcaagaa acagttgaca atatagttgc attcttagaa agcttaacag
    13261 gagaatatca tgacaaataa aaaaagttca tttttgataa aatttattat tttatctaca
    13321 ctagttttag ctttcattct tgttttgtta ggtattattt ttaataacta ttcttcatct
    13381 aaagataata aagaattgat aaacatagtt caacaactag aaatttcaga tgaaaaaatc
    13441 aattctgttt ttcaaaatag ttttaatttt atcaactacg atccaagtgt tcaagcaata
    13501 aaaaaaatgc aagaaaactt tacaaaactt aaaacttttg ggattgacat aaacaaagca
    13561 gaagaaattt ttaatgccaa actaatccag cttaattatt ttaaatccgc aaattccata
    13621 gcagtaaatt caaaacttta tttatttgaa ctagctaaaa attattttga agaattggaa
    13681 caaaaccatg aaacaaataa aaacaactat aaaacaatga gttctatgtt aagcgttctt
    13741 tcaactgaaa atattttaca aaaaacaaca ctaaatcaac tcaacaatct tatgaaagaa
    13801 atcaaaaatg atacaaaaag tgaaaattta caactttttt taaaacacta taacatgatt
    13861 gtaaagcaaa tttctattat gcaagataat tcttctattt atgagaataa ttctctcatg
    13921 aaagagttaa aacaacttaa cacttttacc caaaatacta tagaacaatc taatttattt
    13981 aaattttata tcgctttagc agtatttgga attactcttg tattatttgt attttttatt
    14041 ttattaacac taaaaaaagt catcatgcca attcatactt tagaaaaact aagcgctaat
    14101 ttagctagca aagaagccaa tctacactct cgtttaaata tagatccaaa aagtgagctt
    14161 ggacaaagtg ctcaatatat taattcattt atttccaccg ttcaaaactc aatcatagaa
    14221 gccatagaaa atgctaaatc aagtcatcaa aattcacaaa aactcaaaaa caactctatg
    14281 atgcttgaaa acagctctaa ttcgcaacat gaacaaattc aaggagttaa agaaatcact
    14341 catgttttag atgatcatat caatcttgcg ggaaatttag cacaagaaag tatagaaaat
    14401 atgcaagata tgcacatact aatggataaa gtagaactta ctctatctga acttgtaaat
    14461 ttaataaatg aaaacaatga aaaagaacaa aatatagtag ccaatatgga caatctaacc
    14521 caaagtgcgg ataatattat agaaatcaca aactccatta aagacatagc tgatcaaact
    14581 aatttacttg ccctaaatgc agctatcgaa gctgcaagag caggcgaaca tgggcgtgga
    14641 tttgctgttg tagccgatga agttggacag cttgctgata aaacaagtaa atctctttta
    14701 aacatcaatg ctactgttaa tactatagtc caacaaatca atgacaacaa agccttaatg
    14761 gatcttatcc atgattctat gaaagaaacc tcttcaaaaa ccaatgattt acaacaagaa
    14821 cttgtaaatt ctatgcataa attggaaagc tctatagaat caacccaaac catgaaagat
    14881 aaaagcatgg aagtaaaaga taaaatgctt atcttaggaa caaatataga taaagttaac
    14941 gaacttgcaa attctgttaa agatttatca tgtgaaatca ataatatctc tcaaaatgtt
    15001 ctaaatggtg cctctaaact ctccgaaaaa ttaagtagct ttcagtaact tttttcacgt
    15061 taatttaact taacgtgaaa tttcaataaa aattttattt ttaatttatg tttttcaagt
    15121 aaaattagca gtttttattt caaaggagat actatggagt ttcttgaact tttattagtt
    15181 ttaatcgcct tgatactgat tatcaaaaaa ccagaaaaag aaaatttggc ttttggtttg
    15241 gtaatggtag cttggctttt aatggttttt ttctatgttg gccacaaaac aggcgcacta
    15301 ttaacaataa tgaatctgta aggaagggct aaatgaacga aatcaataaa acaaaaaatt
    15361 tctacacact aatgtgttta gcaggctttt tgattatact cttgcctgta ggtattgcaa
    15421 atttgatatt tggttatatg ttgggcgata gtccttgcac gctttgctgg ggacaaagag
    15481 aagcaatgat ctttatcggt gtaatggcgc ttttcattgt tcgttatggt atgaaaggta
    15541 aataccttgc tgctctttta atcatgacag cagtagggct ttatcaatct tttgctcact
    15601 atggtaatca cgctcataga gatttagatc aaggttttgg tttagcagtt tttggtatcc
    15661 atacttattt ttgggctgaa gtagtatttt gggctgttgt attgctctta ggtgtgattt
    15721 ttgcttttgc tcctaaattt aatgcttttg aagctgaact aaatggagaa aagtttagaa
    15781 aatatactaa atttagcttt gcagcagttt taatcagtgc tatcatcgta gcatcaaatg
    15841 ttttccaagc ctttattagc acaggtattc ctccttatgt aggacaaggc gatcctgtaa
    15901 gatttagttt aaatccaaaa tacatcattt ggagtaaaga aggttggaat ggtttatggc
    15961 aaaatatttc tttcttagga aaacgcgatg ttaaagctcc tgattatgct tttgcacctg
    16021 caagtgaaaa acttggcata aaatttgata atgatatcaa caatgctcca tttgcaaaaa
    16081 tcaatgatga gcttaaaatc acaaatgaac aaaccataaa ttttgacaaa gccatcaata
    16141 ctcttgatta tatcaataac gaatttgtag caagttctaa atgggatgta gctttcttag
    16201 ataataattt tagcgttaaa gaaggttttg aacttgatcc ttatttttca gcttctatcg
    16261 atccaatcat cggtatcata ccttatatga acgataaatt cattcttatg ggctcaaaca
    16321 aatctttctt aagatttgca aaaaatccta atgcaagtga agaagatatc gctaaacaat
    16381 acgctgactt tgtaaaaggc aatgataaat ttaaaggtca aggcgaaagt ttaggtcgcg
    16441 gaagacttga taccgtaaga gcaaaattta accatgtagc aagtatgact acagatggaa
    16501 attatcttta tcttgcaact gttccaaaca acaaagacgc taaaactttt gtaatctcta
    16561 aagtttcttt aaaagatcgt gttctttcag gagaatttac tccaaaagca aatcttaaag
    16621 aaggtaaaac tttaggcgat ctttatgtaa cttctatgac ttttaaagat ggggaaattt
    16681 atgcacttag caaaaatcac aatgtgattg ccgtaattga tccagtcaaa gaagaagtag
    16741 tgaaaactat cgctttccca agctctatca ctaatgctag aagcattttc tttaaagatg
    16801 gaaaaatcaa tattctttct tatcaagatg gagcaaacaa gctttatact ttaaactaag
    16861 ctttaagtcc tagtgaaaac taggacttat atttaatctt atctttaaat cctgcttttt
    16921 caaaacctct taaacgaagc aaacaactat cgcactcccc acaagcttca tcttcactct
    16981 cataacaaga ccaagtaagt tctaaaggta cattttcttt taaggctagt tctacaattt
    17041 tagctttgtt tagtctaaca agcggagttt ttatacaaac tttgaaattc ttactcgtac
    17101 cttcattgat aaattcttgt gccttttgta taaactcatc agtacagtca ggataaccac
    17161 tgccatcttc ttctaccacc cctataaaaa tactctcaca attttccttt tcagccaaag
    17221 atcctgctat acttaagaaa attccattgc gaaaaggcac ataagtgata ggtggagtat
    17281 cgcttgtaca aagctcattt ttagggatgt ctatactttt atcggttaag gcattgcccc
    17341 ctatatcttt gataaaactc acatctaaaa tataagattt ttctactttt aaagccttgc
    17401 aaatttgctt aaaacattct ttttcttttt cttgagtgcg ttgttcatag tcaaaatgca
    17461 aagcgatgat ttcataacct tcttttttgg ccagataagc acacaaagta ctatccatac
    17521 cgccacttat gatacaaagt gcttttttac tcatttttat ccttaaattt gctataattt
    17581 cacaatttta acgaaaattt ttaaatttaa attgcaaaaa ggcaaaagca tgataaacat
    17641 aaaactcata gaacacattt ttaaagccgc ttctatcagt cgttggaatg attatccaag
    17701 aatggcaaat ttggttgaac ttgacaaaca agctcataaa ttcatcatcg catattttat
    17761 cgctaaaatg gaaaaagatg tggatatgag agtgattata gaagggggaa tttttgagtt
    17821 tttaagtcgt gttgtggtaa ctgatatacg ccctgatgtg tatcatgaaa tcgtgcgtca
    17881 aaaaaaagct gaagttaatg cttgggtttt aagcaaaatc gaacctatga tagaagatat
    17941 agaagatggg gaatttctaa agcgttttga agcgtattta aatggtaatg cttatgctaa
    18001 agaaagactt atcttaaaag cagcttcata ttttgctaca agatgggaat ttaacatagt
    18061 ttatcaaacc tcagcttttt taaatgatat tgatgagatt aaaaacaaag ttgaagaaga
    18121 attagaagat tactatgagc ttataggagc tagaaaaatc gctttaaatc aaaaaatagc
    18181 caaaattatt gatcttagcg gaagacttcg ctttcaaaaa cgttgggctc aaactccacg
    18241 cataccagaa accgcggttt taggacatat gcttgtggtg gcgattttag gatattttta
    18301 ctcactaaaa atcaaggctt gcgataaaag acttgagaat aatttttatt gtgctttgtt
    18361 tcatgatttg ccagagtctt taacacgtga tattatcagc cctgtaaaat acggcattga
    18421 tggacttcat gatatcataa atgattatga aatgaaactt attaatgaaa gaattttacc
    18481 ctttgtacct gagggtttaa ggggtgagtt ttcttatatt ttaggcatta gagaaggtag
    18541 aaacggtgag tcaaattttg taaaaaatga gtttgaaaat cgcacttata aaaatgctaa
    18601 aatcgagctt tgcagcggaa gtttaagctc ttttaatgaa aatgaatttg gtgctataga
    18661 tggtaaggcg cttaaatact gcgataaaat tgctgcttat atagaagcag gacttagtat
    18721 aagttatggt gtaaagtcta aagaacttga aagtggtttt ttaggaatgc atgagttttt
    18781 taaagaaaat cctaccatag atggggtgaa tttttttgaa atttgtgaaa gtttaagaga
    18841 gtattttaaa atttaaataa gatttttata ctactatttt caatatgttt taaataaaaa
    18901 tattataaat tcaaatttta ttttgtataa aatataaagg agttattatg aaaaaatact
    18961 ttcaaaagcg ctatacttta gcctttttta taggtatatt agcgggtatt ttcggagcta
    19021 ttgttaaatg gggttgggaa gtaccttttc ctccaagaaa tcccaatgtt ttttggccag
    19081 cagatgcttt agaacgtgtt actccaccta aaatttttct agaacaacta ggcttaccta
    19141 ctgattggat ttatatgttt tcaggtatgc aaatgccttt gtcaattttt atagtacatg
    19201 tcggtttttc tattattttt ggagtggctt attgtatgat agcggaaaaa tggcaccgta
    19261 ttactatgtg gcaaggtgca gtttttggat tttttgttta tctttttgcc catgttattg
    19321 taatgccttt aattgcagaa gttccaccac tttctgaaat tccttttgat gaacacctgt
    19381 ctgaaatttt tggccatatt gtttggctgt ggggcatgga aatagttcgt agagatataa
    19441 gaaatcgtat aaccaaagaa atagaagaat gaaaggaaac ctttcattcc atatctaaaa
    19501 ccgcaccttt actagcattg ctaacaagtt tttgatacat tctaagccat cttgaagaca
    19561 cctctttttg aggcaatgca aattcttttt tacgtttagc aatttcttct tcacttacat
    19621 ttgcatggat agtataagca tctacatcaa tttctatttc atctccatct tttaaaagtc
    19681 ctataagacc accttcagct gcttcagggg aaatatgacc aacgcttaaa ccccttgtag
    19741 ccccgctaaa acgaccatcg gtgattaaag ccacatcagc acctaaaccc atacccatta
    19801 aaagtgaagt aggacttaac atttcttgca taccaggacc cccttttgga ccttcatagc
    19861 gtattacaca aacatttcct ttttgcacct tgcctttgat aatgcctttt atagcttcat
    19921 cttgagagtt aaaacaaaca gctttgcctt taaattttct ttctccgatt attcctgcgg
    19981 tttttataac gcaaccttgc tcggctaaat ttccaaacaa aatggcaagc ccacctactt
    20041 ttgagtaagc attatctact ttacgaatga tattttcatc tttgattttg gcatttttta
    20101 agcgttcttt gagactttct cctgtaatgg tcagtgcatc aagttctaaa atatgtcctt
    20161 gtctgcttga aatttcagcc ataactgcac tcacaccgcc tgctttgtgg atatcatcca
    20221 tataaacact atttagcgat ggggctattt ttgctatgtg tgcaactttg cttgagatga
    20281 aatttaaatc tttaatgtct agtgctaccc ctgcttcacg cgaaatggca agcatgtgta
    20341 aaactgtatt gctacttcca cccattgcca tatctactac catagcatta cgcacagctt
    20401 tttgagtgat gatattgcga attttaaaac gttcatctag ggcgatttca caaatacgac
    20461 gcgctgcttt tcttaaaagc tcttctcttt ctttgcttaa agctaagatg gttccattac
    20521 cttctagtgc tatacccata gcttcgcata aggtattcat agaatttgct gtaaacattc
    20581 ccgagcaaga tccaccactt ggacaggctg aacattctat atctttaaat tcttcttcgc
    20641 taattttttt ggcttcataa gcccctacag cttcaaaaac agagctaaga ctaatctttt
    20701 ctcctttttt agttacccct gaagccatag gcccaccact tacaaaaatg gttggaacat
    20761 ttactcttaa agctcccatt aacataccag gagtgatttt atcgcagttt ggaacacaga
    20821 ttaaagcatc aagttgatga gcattcatca ctgtttcaat ggaatttgcg atgatttcac
    20881 gacttggtaa agaataaagc ataccttcat gtcccatagc tataccatca tctacaccta
    20941 tggtattaaa ctcaaaaggc acacaaccat ttttgcatat ctcatcttta atgattttag
    21001 cataattatt taaaaaataa tgtcctggga ttatatctat atagctattt gctacaccta
    21061 taaaaggttt gtcaaaatct tcatctttca aaccacaagc acgaagtaaa gaacgattag
    21121 gtgcttttaa atgtcctttt tttatcgcat cgcttctcat tgtaactcct gataataatt
    21181 ttttaaaatt atatttagca aagcttaatt tttgtgaaat ttattttgat atacattttc
    21241 ataaatgata aaaattatta attgacaaaa atattttttt ataatacaat gctttttgat
    21301 aatcaaaaaa ggagtcaaaa tgagacaata tgaaacctat aaatgccaaa aatgtggtaa
    21361 tgaagtagaa gttcaaaatg taggtggagg taagcttagt tgttgtggtg aagaaatgaa
    21421 atgtatcact acagatttaa ctgcagtaaa tttgatgaaa gcttttgcgg gcgaatctat
    21481 ggcgagaaac aaatacgatt tatttgctga tgtagctgaa gaagaaggtt ggcatgcggt
    21541 tgctagacat tttagagaag cagctgaaaa tgaaaaatgg catgcaagag cagaatttaa
    21601 agcttatcat gaaatcgttg atggaaaacc tttagaagta actacaaaaa acctagtaag
    21661 tgctgcagaa ggtgaaaact atgagcacac aactatgtat ccaaattttg caaaaattgc
    21721 tgaagatgaa ggtaaaaagg ctatagcaag attatttaca gctattggta aagtagaaat
    21781 cgaacacgaa agagaatatc tagcgcttaa aaaaatgctc gaagaagaag aattttttaa
    21841 tagtgaagta gaagaattat gggtttgtga agtatgcgga catatacatc gtggcaaaaa
    21901 agctccagca gcctgtcctt tatgtaaagc accaaaagag tattttaaac gcgaattttt
    21961 gggttaagtt aagaaattct tatccttttt aagataatat tataattatt ttttaataaa
    22021 aggataagaa aatgaaaaaa ttactatttt tattttttgc tttaacggct tttctctttg
    22081 gtgctgtaaa tatcaacact gcaacactaa aagaattaaa aagtttaaat ggtattggcg
    22141 aagctaaggc taaagcgatt ttagaatacc gcaaagaagc aaattttaca agtattgatg
    22201 atcttaaaaa agttaaaggc ataggtgata agctttttga aaaaatcaaa aatgatatca
    22261 caatagaata aaagggcatt tttgcccttc tttttagaaa aatttgaaaa ctttatttga
    22321 cacaaaagaa cttttaaacg aatttgatat aaatttaatc ggtattgatg aagcaggacg
    22381 cggtgcttta gcaggtccta tgatgatggc agcttgcaaa ctgaacaaac aacttgatgg
    22441 gttgtgtgat tctaaaaaac taagcgaaaa aaaacgcgaa gaactttatg aaatcatcat
    22501 caaaaattca aactatctca tacttgcttt ttcttcagaa caaatcgacg cactaggctt
    22561 aagcacttgt ttaaaaaagg cttaaaactt ataaaaaagc attttaaaac agaaaataac
    22621 ttcttatatg atggaaacac caacctaggt ataaacggga taaaaacaca aatcaaagcc
    22681 gatgctagca ttttgcaagt aagtgcagct agcatactcg caaaagttag taaagatagg
    22741 gtgatgaatt tcttagctaa agactttcct tgttatgaat ttgaaaaaaa caaagcctat
    22801 ggcacaaaag ctcataaaga atttatagct aaatttggaa tttgcaaact ccaccgaaaa
    22861 agttttaaac ttttatgatt attttgctaa attttgatgc aaactcaaag cacattctat
    22921 accatctttt atagcccaaa caactaaaga ttgtcctttt ctagcatctc cacaagcaaa
    22981 gattttttta tgagtggttt ggaaattttc tgtgcttatg ttgtttttct catctaattt
    23041 cactccaaaa tttttagcga tagcttcttc gcacccgcta aaacccatag ctaaaagcac
    23101 taaatccgct ttataagttt ttttagaatt tgaaatttca acatttatag ctttgccttc
    23161 tttaaactcg cgttttaaat catttgcttc aacacattct acatgagttt ttcctaaaaa
    23221 tttctttgtc attttttgat attccctagg atctttgcca tatacagcaa tggcttcttc
    23281 taaaccataa tcagtagtaa aaatgtcagc ttttaaaggc caaggattgt tttggcttct
    23341 ttgcaaaggt ctttttggac ttctttcaaa acgcactata gatttagccc cttgtcttgt
    23401 cgccacagca atacaatcca cacttgtatc cccgcttcct ataaccaaga catttttacc
    23461 tttggccgta tctgcaccct tgcctgtttt taacaaagtt ttggtatttt gcgttaaaaa
    23521 atcaagggca aattcaaccc cttttagctt tctaccttct atatcaagat ctataggctt
    23581 acttgctcct gtacaaagca ccaaagcatc aaattctttt agaagttttg aaaccttatc
    23641 tttgctgtct atattttcat tcactttaaa ctcaatccca ttttttttaa gcaaatccac
    23701 ccgtctttga actatacttt tatcaagctt catatcaggg ataccataca tcaaaagtcc
    23761 gcctatttta tcacttcttt caaaaacact tactttataa cctagtgaat ttaaagtatt
    23821 agcacaagca agaccagcag gcccacttcc tatgacagcg atttttttgc cattgtattg
    23881 cttaggttta tttactctta ctaaattttc tttaaaagca ttttctataa tggataattc
    23941 attatttttg atactcacac ttgtgccatt tatcgcacac acacaagaat cctcacaagg
    24001 agcagggcaa acacgaccgg taaattcagg aaaaggattg gtaagatcaa gtctttcata
    24061 agcttctttc cataaagaac gataaataag atcgttccat tcaggaatga gattgtttaa
    24121 aggacagccc acatcttttc cttcgctcat cacacccgta tgacaaaagg ctacaccaca
    24181 atccatacat cgtccgccct gaatttcttg ttctttttta tccaaaggta tagtaaattc
    24241 tttgtaattt aaaacccttt ccttaggagc aattttttta aaatccattc ttttaaaatc
    24301 taaaaaacct cttgcatttc ccatttttac tccttatttt tgtgtgattt tcaaaaatgc
    24361 tgctaaattt ggatcttttt catttttaca aagatcaagc atttttaaca tcttttcata
    24421 atctcttggc atgactttaa aaaagtcttt tttatcgaat ttttctaaaa tatctttagc
    24481 ctttttagaa tctgtataag tgatatgttt ttctatcaca gcttttaatt ctttttcatc
    24541 cttagcatta agatctttaa tatccacaag ctcggtattt acatgagctt cattgtgtct
    24601 tccaaagata taaacaacgc ccccactcat accagcagcg aaattcgcac ccacatctcc
    24661 aagaactaca acttgtccac ctgtcatata ttcacaacca tgcacgcctg ttcctaaaac
    24721 cacagccaaa gcccctgaat ttcttacaca aaatctttcc cctgctatac catctaaata
    24781 cacttcacct tttgtagctc cgtataaaca agcatttcct gcgatgatat tttcttcagg
    24841 tgaaaaagtg gcttcatttg aaatttttgc tatgatttta ccaccactta aacccttgcc
    24901 taaataatca ttgctatcgc ctacaatctc aagtttaata ccctttaaca aaaacgctcc
    24961 aaagctattg cctgcattgc ctatagcttt gatatggata ctatcttcat ctaaagcatc
    25021 ttttccataa gtttttaaaa tttcgcttga aagcatagtt gcaaaagtac gactttgatt
    25081 tcctacttct aaagaaagtt tgataggctc ttttttctcc acagcatttt tacaaagtgg
    25141 tagtaaaatt ctataatcaa tcgttttttc aagtttattg tctttataat ctttaaaatg
    25201 cacagcggtt ctattataag taggcaagga ttttaaaatt ttatctaaat ttagctttcc
    25261 tgctttacct tgcacacttt tttggcggag tttatccacg cgacctatca tatcatctag
    25321 gcgttcaaaa ccaagccttg ccatgtattc tctaagctcc tcagctataa aatacatgaa
    25381 attaatcaca tcatctactt tgcctttgaa acgatctcta agttctgtat cttgagtggc
    25441 tataccaaaa ggacaggtat ttagatgaca aactctcatc attgtacaac ctaaaacaat
    25501 caaaggcgcg gttgcaaaac caaattcttc agctcctaaa agtgctgcta tggctaaatc
    25561 acgcccattc ataagctttc catcagtttc taatcttacc ctatctctaa gcttatttaa
    25621 gatcaaagtt tgatgcgttt cagctaagcc taactcccaa ggaattccag catgcggtat
    25681 agaagttcta ggacttgcac ccgtacctcc atcataacct gaaacaagga ttaaattcgc
    25741 gcctgcctta gccacacctg cagcaaccgt tcctatgcca ttttcgctta caagttttac
    25801 tgaaatttta gcgtctttgt tcgcatgttt taaatcataa atgagttgag ccaaatcctc
    25861 aatagaataa atatcatgat gaggaggtgg ggaaataagc gtcacacctg cagtagaatg
    25921 tctagcctta gctatccaag gatagacttt aaagcccatt aattgtccgc cctcacctgg
    25981 ttttgcacct tgagcgactt tgatttgaat ttcttttgca tgacttaagt agtttaaatc
    26041 cacgccaaaa cgcccacttg ctacttgctt aatggctgag tttttatcca caccctcttt
    26101 gatttcatag cgttcttcat cctcgccacc ttcacctgaa tttgatttag cacctatttt
    26161 attcatagcc tgtgctaaac actcgtgtgc ttctttagaa atagaaccat aactcatcgc
    26221 tcctgttcta aagcgtttaa ctatactttc tacactttca accttatcta tactgatagc
    26281 ttcactaaaa tcaaattcca tcaaagaacg caaattaact tgtttttcat ctactaaagc
    26341 cgagtatttt ttaaagcttt tatagtcttt gttgcgacag gcttgctgaa gattaaaaat
    26401 cacaagtgga tcgattaaat gttcttcttt agcacttcta aaaccatgaa ttcctttaga
    26461 atctaaagcc ttatgcgtat cgttaaaagc atgtttatgt aaagcaatga gctctttttc
    26521 aaaatcttct aaatccatac cttcaatgcg tgaagttgta gaagtgaagt atttatcaat
    26581 cactttagag cttaagccca gacattcaaa aagtgcagag ccattataac tttgcaaggt
    26641 agaaactccc attttagaag caattttgac tatgccactt gaacttgcct tgatgaaatt
    26701 ttctaccgcc ttttcataac ttaaatttaa atctttattg acaatgagtt tttgtatgct
    26761 ctcataaacc aaataaggat taataacagt cgcaccataa cctaaaagac atgcaaaatg
    26821 atgaatttct ctaggttcac cactttcgat aataagactt gtgtgtgttc ttaaattttt
    26881 tcttactaga tgattatgca ctccagaaac agcaagcaaa gcggggatat aagcgttttt
    26941 ttcatccact cctttatcgc ttaaaatgat aatagaaaca ccttttttaa cctcatcttc
    27001 tatcttaacg caaagctcat ctaaagcctt ttctaaagtt tttttagaat aatcataaag
    27061 tatagaaaat tctttaactt gaaatttatt taaagcctta acttcaaaaa gttcttcatt
    27121 gcttatcaca ggcaaggcta tttttacgcg ttttgcattg ttttcatcag gttttaataa
    27181 attgccttcg cttcctagat aaatccttgt agaagtaaca atctcttctc ttatggcatc
    27241 aagaggagga ttagttactt gtgcaaaaag ttgtttaaaa taattataca aaggttgata
    27301 agttttagaa agtatagcca aaggagtatc tacacccata gctgctatag cttctttacc
    27361 attttgagcc atagcagcca cactcatttt aagctcatca taactccaac caaaagcttt
    27421 ttggagtttt aaaacctcat cttcttttaa aaactgatgt ttataaactc cgcttttttg
    27481 tttttcaagt tcaactaaat ttttaagcca ttttttataa ggcttagcat tagcataatg
    27541 ctctttgatt tcattatcag ctataaccct acctcttgct gtatcaacaa gtaaaagttt
    27601 tccaggttct aagcgttttt tggctttgat atttttttca tcaagtttta aagcccctgt
    27661 ttcacttgaa agtatgagca tatcatcttt tgtaagataa taccttgaag gacgaaaacc
    27721 atttctatcc aaactcgccc ccataatcac tccatcagta aaaactatag cagcaggccc
    27781 atcccaaggc tccatcaata aagaatgata ttcataaaaa gcacgctttt tgctttccat
    27841 attttcattt ttatgccaag gttctggcac catcatcata aaagcttctt ctaaagtacg
    27901 accatttaga gctaaaaatt ctaaagtatt atcaaacatt gcagaatcac tgctaggctt
    27961 agctatgata ggaaaaattt catctaaatt ttcaaaatac tcactttgca tcaagccttc
    28021 tctagctctt atgctatcaa catttccgcg tatggtatta atctctccat tatgcaccat
    28081 ataacggttt ggatgggctc tttcccaact tgggaaggta ttagtcgaaa agcgagaatg
    28141 caccaaagcg atggctgatt tcatattgac atctttaaaa tcaagataaa aatcgctcaa
    28201 ttgagttgaa agaagcattc ctttataaac tatggtgcgt gaagaaaaac ttgaaaaata
    28261 aaattttggc acattaatag ctcttttttc tataaggcga cgcgtactat aaagcactct
    28321 ttcaaactca agtcctgcac ttattttact tggttttttc acaaaggctt gtaaaaaata
    28381 aggcatagct tttaaagcac ttgcacctat atcgctagga ttaaaaggca cttctctaaa
    28441 acctaaaaat tcaagttttt tatcctttaa accttgtaaa aatatctctt ttgcttcttc
    28501 ttttgcatca gtattgggtg ataaaaacat ctgtgctacg gcataatcac cctttttagg
    28561 aagttcaaaa cccaattctt gagttttaaa aaaatcatgt ggaatttgga tcaaaatccc
    28621 cgccccatca cctgaatttt cttcagctcc tgcaccacct cggtgctcaa gattcatcaa
    28681 aatttctaaa gcatcacaaa taaccttata agaagcaata ccgcgtatat tagcaactgc
    28741 agcgatacca caggcatcgt gttcgttctt tgggtgatat aaacctatgc tttgattatt
    28801 ttctaggata ttttctaaat ccattttgct ctccttataa gactgattta aattttgtta
    28861 gctttataag gattatagca tacatttttt taaaatcgat ataattttta tcttaaaaat
    28921 aaataaatta aaaaatattt tgatagattt gtaaaaatta taaaaacatg gcgataatac
    28981 tacctaaaat caataatggg ccattataaa aaataaaagt tggtatgcaa gtatctttaa
    29041 tgtgatcgtg ttgtttatca gcatttaatc ctacagtagt tcccatggtt gtttcactgg
    29101 ctggacttcc tgcatctcct aaagctcctg ctactcctaa gataaatata ataagtgctg
    29161 tactaaaacc aagttccaaa caaataggac aaaaaagcgt agctatgata ggtatagttc
    29221 caaaagaagt acctataccc atagtgatga taagtcctat taaaagcatg aaaaatactg
    29281 ctaaaaattt actttgctcc atccaaggaa cgactgaatt tacaagatct actactgatc
    29341 cactttcttt taaaacttct ccatatcctg cagcaacaag tataacaaaa gctataaaac
    29401 ccatcatttt aagcccatca tcaaaaactt cattgacttt tgaaaattca actccaccca
    29461 aaataaccat taaaacaaaa cccaaaagcc ctgataaagg taaattcata gtcaaaattt
    29521 gcaaaattaa agttaaaaca agcccagcta aaacacccca ttctttacgc gtcatttcaa
    29581 gattttctaa atccacttta gcaatttcta cttcttgata ctctcttgac ttacgataaa
    29641 acacaaaaag cgctagaaaa agtcctgcta tcatacaaat agcagcgaaa tacatagtat
    29701 ttgtaacatc atttaaagat acacttacat tatttgcatt taaattatct tttaaaagat
    29761 cttgaaaagt aagtccaaag cctactggca aaaccatata aggcgtagta agtccaaaag
    29821 ttaaagcaca agcaaccgct ctacgatcga ttttaagttt attaaaaaga cttaaaagag
    29881 gtggaatcaa caaaggtata aaagccacat gaataggaat taaattttga gaaaaacaag
    29941 aaatcaaagc tatagacaaa agcaataaat attttttatg agatataaaa tgacttacta
    30001 tcttaatcaa atatgcagtt aaatttgtct ttgaaatcgc tgcggcaatg gcccctaaaa
    30061 gtatatagct aagagctgtt tttaaatttt ctttcattcc gcttataagt atattcatag
    30121 tatctacgag ttcaagatga gaaaatacac ctgcaacaag agctgagatc aaaagactca
    30181 aaagtacatt aaaacgaaac aaacaaagta aagtcatcaa aacaacactg ataatgatag
    30241 gattagtaag taaagtcaaa attattcctt aaataatttt aaaaatttaa ttgtagaaaa
    30301 aacttagtta aaatgtaata aaactcgaac atataatgat tttattttaa tatgcaaaat
    30361 tataaaaata attatttttt ttaatcaaaa agattaatat aatcaattat ttaaattcct
    30421 aaaatttata ataaaataaa aaaatcataa aaatataagg atatttcaat gaaacaaaac
    30481 aatcaaaaag aagatcgcag aaatttctta aaaaatatag gatttggttt gcttggcatc
    30541 agtgtattgt caaatttttc ttttgagaat tttttaggaa gtaaggcttt ggcaaaagaa
    30601 ttgcctgatt ttaaaataga aggtaaaaaa gatcttatct accatggcga aaaaccatta
    30661 acagcagaaa ctgaaattta tgctcttgat tctgatttta ccaaacctga aaatttcttt
    30721 gttagaaata atggcttacc accaagccta gaaacgataa aagaaagact tcacaaaggt
    30781 tggactttag aaatcgatgg agaaagcatt atcaataaaa aatcttacac catagaagat
    30841 ttaaaaaaga aatttaaaac ctatacttat gccttaacag ttgaatgcgg tggaaatggt
    30901 agatccgaag ttatacctag cacaaaagga actcaatggg gttatggtgc agtagcttgc
    30961 ggtagatgga caggagtacg tttaaaagat attttaaaag attgtggcat caaaaatgat
    31021 gcggtttata tcggatatta tggcatagat acaaaattaa atggtgaaga aacttcacct
    31081 attagtagag gagttcctat ttctaaagct ttacaagatg aaactctaat agcttgggct
    31141 tatgaaggca aagatattcc tttagtcaat ggctatccac ttagacttgt ttgtggtggt
    31201 taccctgcaa gtacaagtgg taaatggctt tataaaattt cagtaagaaa taaaattcat
    31261 gatggtgaaa aaatggaagg ttcttataaa gttcctgtaa atccggtaaa accaggagat
    31321 tttaactata aaggcgagat gaaaatcata gaatcaatgc ctataagatc tgtaattact
    31381 aatatcaaaa atggttctga aataaaagca aataaaaaat ttgaagttag aggtaaagct
    31441 tgggctggag aacttgaagt tagtgaagtt tatataagca atgattatgg cgtaacatgg
    31501 actaaagcaa aggtagaaaa accattaaat agattagcat ggcaaaaatg gagtgctcaa
    31561 atatcaatac caacaaaagg atattatgaa atttgggcaa gagctatcga tagtcaaggt
    31621 aacagtcaac ctatggtttt agcacagtgg aatccaggag gatatatcaa taatgcatgc
    31681 catagagtta atatttatgg agtttaagta tgaaaaaaat tatattgatc ttagcattgt
    31741 ttttaagtgc aagttgggct caaaatcttg aaattaaccc tgatacagga ttgattatcg
    31801 atcctgattc acctttagtg gaagcaaatt gtttagcttg tcatggatcc aatctcatta
    31861 ctaatatgca tgcaagtaga aaagcttggt tagcagctat aagatggatg caagatagtg
    31921 aaggactttg ggaaatagaa cctgaagatg aagaaaaaat tttaaattat cttgaaaaat
    31981 attatggaga aaaatacgat acaagaagaa gaattcctct agctatactc ttacaaaaca
    32041 aaactcattg aagaaatcat ttcttcaatg ataaatttac acatccaaat gctttacatc
    32101 tttagcgtgt gcttggatat aatcgcgtct tggttcaacc tcatcaccca taaagagatt
    32161 aaaggtatca tttgcacttt gtgcatcttc aatagtgatt tttaaaagtc ttcttacact
    32221 tggatccatt gtggtttccc aaagttgctc aggattcatt tcccctaaac ctttatagcg
    32281 ttgtatagta gcaccttttt tagcattggt ttcaacatct tcaagaactt ctaaaatatc
    32341 tttatcaaat tccaagcctc tatctttaat cttatcaaaa atataatttg cttcttcata
    32401 tagtggatga gtgaaaagtt cttcattgat cacaagttct tctaagccat tttgagtttg
    32461 aacgaaagct cgaatttcat tttcgttgat ataatgattt aagatattgt gtccttgtgt
    32521 ttctaaaaat tgtttgatta cactaaataa ttcttcatta tttcctttaa ctaaatttga
    32581 attttctatc atatagcgta tcacagaaat cacattaaaa cgcttttcaa gatcttttaa
    32641 aatcgcacga taagctgcaa cgatttttaa ataatctttt aaatcattca ttcctatacc
    32701 ttcatagttt aaaccttcta ttcctgtttc tatcaggtat tcgctcaaag ctttttcatc
    32761 ctttaaataa atttgctttt tagctttttt ataaagatat aaaggtggtt gtgctagata
    32821 aatatgtcca tttgctacaa gttcattcat aaaacggaag aagaaagtta aaagcaaggt
    32881 ttgtatatgt gatccatcaa catccgcatc tgtcatgatg atgattttat gatatctaag
    32941 ttttgaaaga tcaaaatctt cacctatacc acagccaaaa gcggtaatca tattttgaat
    33001 ttgctcagat tttaaaattt tatctaatct tgctttttca acatttaaaa ttttaccacg
    33061 caaaggcaat atagcttgaa aagatctttc tctaccttgt tttgcagaac ctcctgcaga
    33121 atccccttcc acaagataaa tttcactttc acttggatct ttactttgac aatcagctaa
    33181 tttccctggt aaagttccta cgcttaaact ttctttttta cgcgttaatt ctctagcttt
    33241 tttcgctgct tctcttcctc tagctgccat taaggctttg ttcattatag ctttagcttc
    33301 gataggattt tcttcaaaat atttagtcaa atattcaaaa cttgcttttg aaactatagg
    33361 acgcacataa gttgaaccaa gttttccttt ggtttgtcct tcaaattgtg gttcaggcac
    33421 ctttacactc acaatagcga tcaaaccttc acgcacatca tcacccgtga ttttattatc
    33481 cttttctcta gcacttgcat ttgcttctat atagttactt atcacacgag ttaaacccat
    33541 tctaaaacca gcttcgtgtg ttccaccatc tggagttttg atattattta caaaagagag
    33601 taaattttca ctataagtat cattgtaaag caaagctact tcaacattca catcttcttc
    33661 atctacgcta aagaaaattg ctttagttaa agcttctttt ttatttaagt ctgtaacaaa
    33721 ctgagaaatt ccaccttcaa agtgaaaact ttcatgtttg cctacgcggt tatctttaaa
    33781 atttatagtg atttttggat ttaagtatgc aagttcacga aatcttttag ccaaaatttc
    33841 ataatcaaat tcagtcactt caaaaatttg atcatcaggc caaaattcta tagttgttcc
    33901 tgttttttta ctttttccta tcacaccaaa ttcactgata actttacctt ctgaaaattc
    33961 ttgacgataa atttctccat ttctttcaac tgtagctaca agttttttag agagtgcatt
    34021 tacaaccgaa accccaacac cgtgcaaacc gcctgaaact ttataagtat ctttatcgaa
    34081 ttttccccct gcatgtagga cagttaaaac aacagttaaa gttggcatat tttcagttgg
    34141 gtgcatatca acaggaatac cacgaccatt atcactaact atacagcttc cttcagtagt
    34201 gatttctaca tctatagtat cacaatgtcc tgccatagct tcatcgatag aattatccac
    34261 aacttcataa atcatatgat gaagtccgcc tatgtttgta tctcctatat acatacctgg
    34321 gcgttttcta acagcttcta agccttttag gactttaata ttactcgcac cgtaattttc
    34381 ttgcatattt ttcctttatc ttttacttgt tttattacaa aatcataggc atgataatca
    34441 ttgatagtcc ttgggatttg actataaatg ctgaattagg ttcatttaca cttaaagtga
    34501 atttttcttc ttctatagaa gttaaaaaat caagtaaata tttgattttt atagtaagat
    34561 taaattcttc acttactcct gtttgaattt caagttctgt ttttgcttcc atattgtcta
    34621 aacttatacc ttcaaagatg attttatctt tgttaaaata aagtctcatt ttttcagtta
    34681 caacgctgat ttttttaaga ctatctataa aatcttcagt tgaaaaactg agttcttgtt
    34741 tgaaagtttt tggtataact ttttcataat ctggaaattt atcattgata agttttgtaa
    34801 agaattcaaa attttcattt ttagcgataa gcatattttg atcataaaaa atttctattt
    34861 tttcatagaa aagtttttgc atttccatga tagctttttt agggatacta aaactaaatt
    34921 cttgattatt tgctttttct aaagtataga ttgcaaggcg ttttgtatca gttcctacga
    34981 agttaatttt atctgttttt atatctaaaa atgcaccatt taaggagtat tttgggttgt
    35041 ttgtatcaat acttggtaat atctttttaa gagaacgact taagtcactt gaatcaatgt
    35101 caaattggtt ttttccttct gtatttggaa aatttggaaa atcttcatga ttaaacatag
    35161 gaagtttgta ttttgtgctt ttttgtctta taaataaaaa attatcaata gtttctaaaa
    35221 caacttcttc attgtttaag cttttaataa catctgcaat actttttgcg tttgcagtag
    35281 caaaaccact tgattctacg cggatttttt ttatcttata gttgatacct atttcataat
    35341 cactagctct aataagaagt ttatcttcat cagcatgaaa aaaaagatga gaagtaatgg
    35401 tgcttgagtc ttttttttct acataagcat tacataaaat cactgcagat tctaaagtat
    35461 ttttattgat acttaacttc attttttctc cttggtttat tttaatttta aattcgttgt
    35521 aataataagc ttgttgaaat tgtgaaattc ttcaaagcaa aataatcaaa tttgtatttt
    35581 atcatacttt gcttaatttc tttttttcac actctagaat ttatttttca catcctttca
    35641 cttaactttg acttttaaca agaattttgt ttttaagttc ttcgattttt gcttttaaag
    35701 aagcatcatt ttctatcatt tctgtgattt ttttaacatt atgtgaaata gctgtatggt
    35761 ctttcatttc aaaataattc gcaagttgtg gcatagtcaa agccgtaagt gccctagcta
    35821 ggtaaatcac aatgcgtctt gctgtgacta tattttgagt ttttttattg gatttcacat
    35881 cgcttggttt gatgttaaat tctttacata ccaaagataa aatgtcatct atagtgatat
    35941 tttctttctt ttctttgata tgatctttca tcacactttt ggcaagttcg agtgtgattt
    36001 cttgtcctag tatggttgca taagcattta aacttatgat gataccttcg atttctctta
    36061 tattatcccc taaagaagta gcgatatagt ttatgatatc attagaaaga ttgatatcgt
    36121 taaattcaca tttttttctt atgatggcta tttttgtatc tagttgaggt ggagttatat
    36181 cagctatgat cccatgtgca aaacgacttt ttaagcgttc ggttatacct tttagcatgt
    36241 tgggtggatt gtctgaagtc atgatgattt gtccatcgtt atttttgatt tcattaaata
    36301 taaagaaaaa ttcttcttga attttatcgg tttttcctaa aaactgcaca tcatctataa
    36361 gcaaaacatc gcagtttcta tacttttcat gaaatttatc taaagagcca ttttttaaat
    36421 ttgaagtaaa atcattgata aaattttcac tcgtagcata aataactttt tttcccattt
    36481 ctaagcttgc atttccaact gcttgaagta aatgtgtttt tccaagtcct gtaggcccat
    36541 aaacaaagat aggattataa agttttccaa gcttatcttt atgtgttata gctttacatg
    36601 ctccataagc gtatttgtta gaatccccta caacaaaact ttcaaaagta aaagaaggat
    36661 ttaaaatcgt gctttgtgct tttatatgag ctatgtcgat ttttgtgctt ttgttatttt
    36721 gtttagcact ttgtgcttgt atatttatga tggctttatt tccgctttgc acttcataaa
    36781 aatgcgcgat ttttttgccg tattttgttt gtatgaattt agccatgagt tcatttggag
    36841 cgttaaaaac caaaagatct gctttgcttt gtttttcgtt gaattttaaa tttgatagat
    36901 agttttcgta ttcgttttcg cttaattctt tttttaaatt ttcaagtatt tggcttggat
    36961 tcataatctc tctttaaatt ttgcataatg tataaatttt atcttaaatt tcataaaaaa
    37021 aggttaaaat ccgcttttgt attttatttt tcaaaaggta tgaatttgaa aattttaggt
    37081 atagatccag gttcaagaaa ttgcggttat gctatcatag aagctgacaa aggaaaaaac
    37141 attctcatag aagcaggact tataaagata aagccaagta ccttacagta tcaaatcaca
    37201 gagctttgcg agggtttgga cttgattttt aaaaatcatt cttttgatga agtggctata
    37261 gaagatatct tttttgctta caatccaaaa accgttttaa aactcgcaca atttcgcgga
    37321 gccctatctt taaaaattct tcaaattcat ggagattttg cagaatacac tcccttacaa
    37381 gtaaaaaaag ccgttacagg aaaagccaaa gcaactaaag aacaagttgc ttttatggta
    37441 aaaaggcttt taggacttag taaagatatc aagcctttgg atatcacaga tgctattgca
    37501 gtagctttaa cccatgcagc aaatttaaga gttagggtgt gattttagta atttttatta
    37561 cacaaaagcc caaagcttca taaactccca aaataccttt aaattttttc tataaatttt
    37621 taaaaaattc ataaaaaatt tcaaaagttg gaacagaact tgcttgtaaa cttcacataa
    37681 acgcaaaagt tttttaaagc caaagcgtta aattttttaa agcaatattt tataaaggat
    37741 ttaagatgat gagatcactt tggtctggcg taagcggact acaagcacat caagttgcga
    37801 tggatgttga aggtaataac atttcaaatg ttaataccac tggttttaaa tactcccgtg
    37861 cagattttgg gactatgttt agccaaactg tgaaaatcgc tacagctcca actgatggaa
    37921 gaggtggatc taatccactt caaattggtc ttggcgtttc agtaagttct acaactagaa
    37981 ttcattctca aggttcagtt caaaccacag ataaaaacac tgatgtggct ataaatggtg
    38041 atggtttttt tatggtgagt gatgatgggg ggcttacaaa ctatcttaca aggagcgggg
    38101 attttaaact tgatgcttat ggaaattttg tcaataatgc cggctttgta gttcaagggt
    38161 ggaatatcaa ctgggatgat caaactatag atagttcaag aactccacaa aatattttta
    38221 tcgatccagg tatgcatatc cctgcagcaa aatccacaga agtagccatc aaagcgaatt
    38281 taaatagcgg tttaaatata ggaacttcaa gtagaaatct ttatgcactt gattctgttc
    38341 atggatggaa tactaaaacc caaagagcag aagatgaaaa tgatacagga actactcagt
    38401 tttacacgac ttctaagaat gctgtagaag tgacggaaaa gggtgtggat gcgggatcac
    38461 tttttaatgc taatggacag ggtttaaatt taagagaagg tcaaggaatt tgggtgtctt
    38521 atgcggatgc aaaatttact acagataagc cagctaatgt taatgttttt gatcctaata
    38581 accatactaa tcaaaatgga tctatttttt ggggtgataa agataatgct gtaattttgg
    38641 atattacctt aaatggtgta aatatacaaa atgcaaatat tagaagttta gatgaagcta
    38701 tagcttatat caataccttt actgcaccaa cggatacaag agatggaaca ggagttaaag
    38761 ctgtaaaaaa agcagatggt tcaggtatag aatttgtcaa cgataatgcc gatggtacta
    38821 ctgacaatat gaaaaatatt aatttaactg ttaatcaagc taatactgca ggggaaagac
    38881 atgcaatcac ttggaatgcc ggaaataata attttacagc aacaagtgct aaaaacaatg
    38941 ctaactctgt atggattcca acagcagcta atgtgaatgg taacgcagag agcatacaaa
    39001 taataacggc tcataaatat atttatagct ctaccccagt tgatattcct cctatgtata
    39061 atccagatgg tggtccaaat tttattgcta atggtaatca aagacctaca gatcctgctt
    39121 ctgctaatta ttgggatgct atacaaggaa gtttaaaaaa tgctactgaa agaactttta
    39181 gaaccacaga agatttaaga gagcttttgc aaagagatgc tagatatgga gtagactatg
    39241 atggaaatgg aagttcagga tatgatgcta atgatatcaa tcaagctgta aaagtagtgg
    39301 taactgaaaa tggtaatttt gctatttcta acgcaaatga aacttctact ataccagcta
    39361 atgctggtgc tggtgctggt gctgctacaa caaatccaaa aaatatgagt tttaatataa
    39421 ctgcttatag taataaacaa ggaactgtaa gtaccaatga tgcctttact aaaattttta
    39481 aagcttttga cggagtttta acagtcggag gtcagatcaa agaaagcgaa caacttaagc
    39541 tttctgcttt ttcagcagga cttgaaattt acgattcctt aggttcaaaa cacactttag
    39601 aagtgcagtt tgttaagcaa agcaccactc aagatggggg taatgaatgg caaatgatca
    39661 tccgtgtacc agaacctgca gagattaaca ctacaggtga aggtcctaca aatatcatcg
    39721 taggaacagc aagatttaat aatgatggat ctttagctaa ttatacacca aaaacgataa
    39781 atttttcacc aaataacggt gctgcaccaa atcaacaaat caaactttcc tttggaacaa
    39841 gtggaagcaa tgatggcctt gtaagctcaa attctgcttc aactctaaca ggacaggcaa
    39901 ctgatggtta tacttcaggt aacttaaaac ctgatgctat ccgtgtggat gacaaaggta
    39961 atatcttagg tgaatttact aatggcaaaa cctttgctgt agcaaaaata gcaatggctt
    40021 cagtggcaaa taactcaggt cttgaggaaa ttggtggaaa tctttttaaa gtcactgcaa
    40081 atagtggtaa tatcgtagta ggcgaagcag gaacaggagg tcgtggtgaa atgaaaacct
    40141 cagctcttga aatgtcaaat gtggatttaa gtcgttcttt aacagagctt attatcattc
    40201 aaagaggtta tcaagcaaat tcaaaaacca tttcaacgag tgatcaaatg cttcaaactc
    40261 taatccagct taaacaataa tttaagctta gtattctata aaatattgtt ttttgctccc
    40321 tttaagggag caagccttgc tttacaagcc tatcttggta gtcttgtaat actaggctta
    40381 ggcttgaact gccttcaatt tattgctaac tcactcttgc taggggtgag ttgcaataaa
    40441 attgcatttt cttatctgta tcataatcgt tttaaaaact tattttgtta taatttttgc
    40501 ttgaatttaa atttaaggaa aatctatgcg ttatggtgaa aaagaaatca aagaatttga
    40561 tgtagaaaat atggaaattt ggccaaatga tgcgaaaaat gactatatca ttaaaatcac
    40621 tttacctgaa tttatgtgtt gttgtccgcg ttcgggttat cctgactttg cgacgattta
    40681 tcttgagtat atgcctgata aatttgtggt tgagcttaag gcgataaaac tttatatcaa
    40741 tacttttatg tatagaaatg tttcacatga agcaagtatc aatgaaattt acaatacttt
    40801 aaaagataaa ttaaaaccaa aatggattaa agttgtgggg gattttaacc cgcgtggaaa
    40861 tgtacatacg gtgatagaat gtcgtagcga tatggtagtg ccaaaataat atttgagtaa
    40921 aatattaaca tatttttatg caaagattaa gtattttatc aaaaattctt atttaatctt
    40981 tgaagaatat ataatataaa aagatctaaa ttttttagat cgaattttat tataaggagt
    41041 taggttatga ataaaaaatt attaagcatt atcgcaagta ctactttgtt ttcaaatttg
    41101 gctttagcag atgagaattc tggttttttt ataggtgctg atgcagcttg gatgcatgct
    41161 caagtaaaaa gtgagttaaa acataagaat acaaagcaaa attttaatgg agatatttca
    41221 ggtaatatac catcgtttgg tctaaaactt ggatatcgtt taaatgaaaa tcatagaatt
    41281 tatgctggtt ataattattc tgatgaattt agtgatttta tcaaaactcc taaaattcaa
    41341 atcgaaggtg attttactac acataaattt ttaacaggtt atgattttac tcctaagctt
    41401 tttgaaaaaa ccagagctgt tttaggtgtg tatggaggat atgcaagaac agatcttacc
    41461 ttaaaaacaa gctttttatc tttgtcgcaa aattttgacg gttattttta tggagcgaaa
    41521 ataggtgctt tatatgattt gacaccacat aatgaaatag aattaggctt taaagcagag
    41581 caaattcatt ataattctag aaatttttat caaaataaag tgggttcaaa cttttacgat
    41641 cctaaacaaa caaattatgg tgtatattta ggatataatt ataaatttta atctaatgca
    41701 agtttttata acttgcatta atgaaatcaa cctccaccga taaagtattt ttcaacatca
    41761 tcaagtagtt tttcacaaat ttgagaatct gtattttttt ctactacaag attgatataa
    41821 gttttagtat ctctgaaact tcctgctgat tttgaatttt cacgagtgag tttttgattc
    41881 tctttagtat attctatagt gatgttaaat tttagagcag cacttgcttc acctaaattc
    41941 gtttttacta ctacattcat tttagaagct ttagcaagtg tagcttgggt tttgtttatg
    42001 atctctttaa agcgttggca agatcgtata agtgtagcga taaatttgtt atcaagtcct
    42061 tcataagcta ctttgagttt atttttgata tcttttgtac tttctttttc aggggcaaca
    42121 aaaaccatat aaaaaccatt ttttatagtc acattgtctg tttttacatc gcgtccactt
    42181 gacataactt taacataaat ggcattatca agataaacac gatctaccat aggcccataa
    42241 atttcgtatt ctttttttcg gactatgact tcacgagcta ggacatttaa tttcacattg
    42301 gcttcgtgga taacaggttc catttctttt ttaatctcta agagttcttt taacatcaac
    42361 ttcctttttg ttacttaaaa ttacaattat atcaataatt ttcttaattt aagaatttta
    42421 caaacacatt tactaaaaat atgatacatt aagtattaat tttaacaaag gaggaaaaga
    42481 tgaaacaaat ttttgaaatt tcaaattcag tccaacaaaa aagtaaagac aatactttta
    42541 atctgctact gcaactctca ctctaaaact caattttatt tttaatcatt ttttacattt
    42601 ttaatttttt atcattgttg ttaagttttt gaatttttaa ttcattcagt ctgtttggtt
    42661 ttaaaggatt aaatcatgaa agataataaa atcataatct ttgataccac tttgcgagat
    42721 ggagaacaag ctttaggcag ttctttgggt atcaatcaaa aattacaaat cgctttagcg
    42781 cttgaaaatt taggcgtaga cgttatagaa gcaggttttc cggtatcttc acaaggggat
    42841 tttaaagcgg tgcaaaagat cgcttctaag gttaaaaact caactatttg tgcactttct
    42901 agagcattgg ataaagatat agatatggct tatgaagctt taaaagtggc aaagcatttt
    42961 agaattcata cttttatagc cacttcgact ttgcatatgc aagataaatt aaaaaaagat
    43021 tttgatgaaa ttttgtctat ggcaaaaaga gcgattataa gagcaagatc ttatactgat
    43081 gatgtagaat tctcatgcga agatgcagga agaactctga tagataatct ttgttttatg
    43141 gtggaaaatg cgataaaagc aggcgctaaa actataaata tcccagatac cgtaggctat
    43201 accttgccaa gtgaatttgc taatatcatc aaaattttat ttaacaaagt gccaaatata
    43261 gacaaagcta tcatttctgt gcattgtcac aatgacttag gtatggcaac gggcaatagc
    43321 ttaagtgcta ttttacaagg tgcaagacag atagagtgca ctataaatgg acttggcgaa
    43381 agggcgggca attgtgcttt agaagaagtg gttatggcga taaaaactag gaaagattat
    43441 ttaaaaggtt tttatactga tattaaatgt gaaaatatct ttaaaacttc aaaattagtt
    43501 tcagctatca ctaatgaaag cataccttcg cataaagcta tagtgggtag caatgcgttt
    43561 tctcatagtt caggcattca tcaagatgga gtgcttaaaa ataggcaaat ttacgagatc
    43621 ataagcccta gtgccatagg aattcatgac aatcgtatgt taatgacggc aagaagtgga
    43681 agggctatga taaaaacttg ccttgaaaat ttaggctatg atgaaaatac ttataattta
    43741 gatgatgttt atgagcgttt tttacgcctt gcggataaaa agggtcaagt atatgattat
    43801 gatttggaag ctttgatgtt tttaagctat gaaaatgaag aagaaaatga atttgtgatt
    43861 gaaaaattaa gcgtgattag tggcaatatc ccaactgctt gtgtttgtat gcgtattaaa
    43921 gaagagttaa aaactgaagc ttgcacagga aatggtcctg ttgaagcagt ttttaactgc
    43981 attgctagga taacaaattt aaagcctgtg ttaaaagctt atagtatcaa tgcaaaaagt
    44041 tcaggagtag atgctcaagg gcaagtggat gtggatttgg aatttaaagg gagaaaattc
    44101 catggaaaag gactttcaac agatgttata gaagcttcag cacaagcttt tgtgagtgct
    44161 tacaatgcga tttatcgctc tttaaaagta gaagaaagga aaatggcatg aaaacttata
    44221 aagtagctgt cttagcagga gatggtatag ggcctttggt aatgaaagag gctttaaaaa
    44281 ttttaacttt tatctcacaa aaatacaatt ttagttttga atttaatgaa gctaaaatag
    44341 gcggtgcaag tatagatgct tatggagtgg ctttaagtga tgaaacttta aagctttgtg
    44401 agcaaagtga tgcgatttta tttggttctg tgggtgggcc taaatgggat aatttgccca
    44461 tagatcaaag acctgaaaga gcctcgcttt tgcctttaag aaagcatttt aatttgtttg
    44521 caaatttgcg tccttgtaaa atttatgaaa gtttaactca tgcttcacct ttaaaaaatg
    44581 agattatcca aaaaggagtg gatattttat gtgttagaga gcttacaggt gggatttatt
    44641 ttggtaagca agatttaggc aaagaaagtg cgtatgatac tgaaatttac actaaaaaag
    44701 agatagaaag gataactcat atcgcttttg aaagtgcaag aataagaaag aaaaaagtgc
    44761 atttaatcga caaagcaaat gttttagcaa gttctatttt gtggcgagaa gtggtggcaa
    44821 atgttgcaaa agattatcaa gatataaact tagagtacat gtatgtggat aatgctgcga
    44881 tgcagattgt aaaaaatcct agcatttttg atgttatgct ttgttcaaat ctttttggtg
    44941 atattttgag cgatgagtta gctgccatta atggatcttt gggtttgtta agttcagcaa
    45001 gtttaaacga taaaggtttt ggactttatg agccagcagg tggaagtgca cctgatatag
    45061 ctcatttaaa tatagctaat cccatagctc aaattttaag tgcggctttg atgttaaagt
    45121 atagtttcaa agaagaacaa gccgcacagg atatagaaaa tgctatatct ttggcattgg
    45181 cacaaggaaa aatgactaag gatttaaatg ctaagtcgta tttaaatact gatgaaatgg
    45241 gggattgtat tttagaaatt ttaaaggaga ataataatgg ctaaaacttt atatgagaaa
    45301 gtctttgatg ctcatgtggt ttatgaaggc aaaaacgaac ttcctatact ttatatcgat
    45361 agacatttaa tccatgaagt aacaagccct caagcatttt cagggcttaa aatggctaag
    45421 cgtagaatgg caagagcgga tttaactttg gctaccatag atcatgatgt ttcaactaaa
    45481 agcgtggatt taaatgcttg ttctgatatg gcaaaagagc aaattacaac tttgatgcaa
    45541 aatactaagg aatttggagt aaggctttta ggacttggag ataaaaatca aggcatagtt
    45601 catatagtag gtcctgagct tggctttact ttacctgggg ttactttagt ttgtggggat
    45661 tctcatacgg caacacatgg ggcttttgga gctttagcct ttggtatagg cacgagtgaa
    45721 gtagagcatg tcatggcaac gcaaacttta aaacaagcca aacttaaaac tatgaaaatc
    45781 gaatgtaaag ggcagtttca aaaaggcgtt tatgctaagg atttgatttt gtatttgatc
    45841 gcacaatacg gcacagcaaa aggcacaggt tatgctatag aattttgtgg agaacttata
    45901 aaaaatttaa gcatggaagc tagaatgact ctttgtaata tggctataga atttggagct
    45961 aaagtaggta tgatagctcc tgatgagatc acttttgagt atattaaggg aaaggaattt
    46021 gcacctaaag gagaagaatt tcaaaagtat tgcgagtatt ggaagagttt aagaagcgat
    46081 gaaggagcaa aatatgatga gagtattact ctagatgtaa gcaagataaa accacaaatt
    46141 agctatggaa caaacccttc gcaagtgatt ggtatagatg aaaaaattcc aaaaataagt
    46201 gattttaaaa atcaaagtga gcaaaaatct ttgcttgatg ctttatctta tgtaaattta
    46261 gagcaagatc aagttataga aggggtaaaa atcgacattg tatttatagg atcttgcaca
    46321 aatgggcgtt tagaagatct taaaatagcc gctgatatct taaaagggcg caaaattcat
    46381 aaaaatgtta aagctttaat cgtgcctggt tcaatgcaag taagaaaaga agctgaaaat
    46441 ttaggactcg ataagatttt tatcgaggca gggtgtgagt ggagatatgc agggtgttct
    46501 atgtgtcttg gtatgaatga tgacaaagca aattcaggtc aaagagttgc ttcaacttca
    46561 aatcgtaact ttgtaggcag acaaggtaaa ggttctatca ctcatttgat gagtcctgca
    46621 agtgcggcag cttgtgccat agaaggtgtt atttgtgata atagaaagta tttaggagtt
    46681 taatatgcaa aaatttatta tacataaagg tatagcttgt cctttagaat atgccaatat
    46741 agacacagat caaattatac ctaagcaatt tttacttgca gtgtctaagc aaggttttgg
    46801 caagcatttg ttccatgatt tgcgttattt agatgataaa gaaagtgttt taaatatgga
    46861 ttttaatctc aataaaaaag aatatcaaaa tagctctatt ttggtgagtt ttgaaaattt
    46921 tggtagtggc tcttcaagag agcatgcgcc ttgggctttg gttgattatg gtattagagc
    46981 tattatcgca ccttcttttg cggatatttt taaaaacaat gccttaggaa acggtttgct
    47041 cactatagaa cttgctaaag atgaggtttt ggaaatagtt gatgagttaa aaaaatccca
    47101 agataaaaat atagaaattt ctttgttgga aaaaagagta ttttttaaag ataagatttt
    47161 ttcttttgat ttagatgatt ttcacagaat ttgtcttttg gaagggcttg ataatatagc
    47221 tttaacttta aaacatgaag cacaaatcaa agcctatgaa aaaaactcaa aaagcttttt
    47281 ggtttagaat tttttcataa gctaaaaaag gatcttggta attaggtatg tcaaagtttc
    47341 cacaaaaatt aaaatcaagc tttttaaaaa gcgaattcat aggaaaattt ttactatgag
    47401 tatctgctct taaacttgcc ttgtgatttt ccaaggcaaa attttcgcaa aaatttaaaa
    47461 gtttttgtgc cacgcctttg ccttttgcct tttgtttgac agctaaacgg tgtagataaa
    47521 aggctttatc atcataattt ttgttaaaaa taacttgttt gtaaaattca ggttcaaatt
    47581 tttcattgat acagataaag cctaaaattt catcattttc tttaaacaca taaagttctt
    47641 gtgcttgtat atcttcttga aaaactattt cattgggata attctcatcc cattggtgaa
    47701 aattcatagt tttcatagca tttaaagcat cttttgtgat ttcaagtata gaatttaaat
    47761 ctttattgac ggctttttgt atgatagtgt tttgcatgat aatcctttgt ataaggaagg
    47821 gtgatggtgg ctccgattgg acttgaacca acggccacta ccatgtcaag gtagtgctct
    47881 accagctgag ctacggaacc atatggtgga gcatagcggg ttcgaaccgc tgaccccaac
    47941 gctgccagcg ttgtgctctc ccagctgagc taatgcccct ttataagtct gagattttat
    48001 cgcaatatta cttgtttttg gctgaaaact aaaatcaaat ttttaattta tgatgtaata
    48061 tatgtataaa aagatttatt ttttatgaaa aattagagaa ttaatgagag taattttact
    48121 atttgattaa ttctaaaata tctctttttt tgttaagttc aagttgtcta gaataataaa
    48181 aatatttggt caaaaccaaa attcctatat ggaattcttt tttcttatct aaaaatttct
    48241 taatatattg atgagcatta ttaataattt ccaatgcatc ttttgggcga cttttaaaat
    48301 attcaattac tgctgacaaa ttctcattat caatcaaagc aaagtgataa tttggtttta
    48361 aagttccttc cataaaccaa gtttcgcaag ttatttttgg agctaaaact aaagaattag
    48421 aattcatagc ccattttaag ttgcttgcta catcgttacc ctctaaagaa attataaatt
    48481 tatatttcat ttgttctttt ttgtttaaaa agtttttttc ccattggcta ggttgttttg
    48541 aagtatctcc tatatcgcaa aaagttctac caaaataaga atcaaaaaat tcttttcgat
    48601 gattttgata tactgctcct ctaaatattg ctatatcctt tttattttca tagtttatgt
    48661 tatcttttaa aaagcaaaag tgcctatttt tatcaagttt taataaaata ttatttatat
    48721 tattttccaa agatctcgat ttgcaaatag ttgcttcttt aaaagtatgt cttacatcgc
    48781 caaattcttt attccataaa aattcatctt taaagtattt actgatttca taagcatcaa
    48841 aagcataaga ggtgctttta aaaggaaatt ttcctatttt ttcctttgct gtaggtgtaa
    48901 aaaattcatt tatttgatta taatatttaa ctcgagtttg tatttcttct aagtctttaa
    48961 tattgtattt taaaatatca ttaaaaattt tatctaaatt tatttgaaaa aaatatcttg
    49021 gtataaaaga tattcctatt cctcttaaat tcatcaaaag tcttgattgt agcattataa
    49081 aaaacctaat aaataaaatt tttaatattt tatcaaaaat ttaagaattt ataaacaata
    49141 aaataacttt tgacaaaaca atagtatttt aaatattaaa aataagaatg gcagacagga
    49201 agggatttga accctcgaaa gcttgcactt tacacgcgtt ccaggcgtgc tccttcaacc
    49261 gctcggacac ctgtctatga aataaagcgt ttattatatc tataaaagct ttaaaaataa
    49321 agaaattttt taaatattga aaataaaatt atttttttaa aaatcagaaa atttttagta
    49381 aaaagtagta taattatatt tttattttta gtcagggtag ctcagctggt tagagcgctg
    49441 gtctcataag ccggaggtcg ggagttcaag tctccccctt gacaccatta agtgtaataa
    49501 ttattttttt tcttttgtta ctacaaaaac aattccacca aaacctataa ttacaacagc
    49561 tgttataaaa atgatttcaa aaatatctag cattgtcatt gttcttttgc cctttcttta
    49621 agctgtccac aagcagctga gatatcaagc cctttacttt ctcttatagt acaagttaca
    49681 cctttattgc tgagtaaatc ttgaaattta atcgcgtttt ctaaactagg gcgtttatat
    49741 aaacctcctt catgtggatt aaagagtatt aaattcactt tggctttaat accatttaaa
    49801 agcttgacta attctttagc gtgttcaagc ttatcattga taccatcaat taaaagatat
    49861 tcaaacatca ctctttttct ttgatctata ggaaattcac gcaccgcatc cataatcgca
    49921 gcgatattat aagctttatt gatagacata agttcggttc gaagctcatc attaaccgca
    49981 tgcaatgata tagcaagtaa aacacctaaa ttcatttgac ctaattcttt gatttgtttt
    50041 gccaaaccgc tagtactgat ggtttgacgg cgaggactta tagcaagtcc ctcattttgc
    50101 gctaaaattt ttaccgcttt agaaacattt ttaagattat ccaaaggctc gcccataccc
    50161 atatatacta tatttacacg gcgttcataa gggatattgt tttgtttttt gatccataaa
    50221 atttgtccga ctatctcacc tgcacttaaa tttcttttca aaccaccctt ggcagtaaga
    50281 caaaaactac atccactttt acaacctact tgagaagaaa cacagatagt atatctcgca
    50341 tgagaaattc ttttgccttc tgcgtctatt ttttcttctt tcataggcaa aagcacactt
    50401 tctatcctta aaccatcaac gagttcaaaa agatatttta tacttccatc tttactttgc
    50461 tcatttttaa cacattttac gggagagaaa tgaaaatttt gcgcaagttc taaacgtaga
    50521 tcttttggta aatttgacat atcggaaaaa ttattggcgt atttttgata aatccattga
    50581 taaatttgtt tcacgcgaaa catcggtttg attttttctc ctaattcttc aggtaaaaaa
    50641 tctaaaatat taacaagctc tttcaaaatt attttccttt tttgaatttt taaatataat
    50701 gatatttttt taagtattct tctaattttt cttttgcctt ttgatgattt tttataaaat
    50761 cttcgtgagc gttttcattg caaaaatttg ttgcacacaa aatacactct gcatcaatat
    50821 ttaaattttt agctacgctc aaaacagaaa aggcttccat attttctgca aaaaaaccta
    50881 attttgaaaa ttcttttgct gcttttgaat tttgacaaat ataatttgaa gaattgattt
    50941 ttattgtttc acgagaaaca ttttcttttt ctaagcaaat ttcatatttt gcaggagtat
    51001 aaaatgcatg tgaaatttta gaaaattcta cattaaaagc gtgcgaactt ctataaattt
    51061 ctaaaatctc tcccttatca taaagcccac aagttcctat aaatataagt tttgatggtt
    51121 tttctttgaa gtaaagttga ctcaaatgaa aagctgactc aaccaaacct atgcctatag
    51181 cttttgcaaa agaaaaattt tcatttccac ccgcacaaac aatcattttg atccttatga
    51241 aattttacaa aaataattct acctaaaaag acttaattaa gaatttttag ataaaattat
    51301 ttcttatggt taaagcaaaa aaacaatacg gacaaaattt tttaatcgat aaaagcgtat
    51361 tagcaaaaat catccaagcc atacccaaag agatgaacaa tatcattgag attgggcctg
    51421 gcttaggtga tttaacgcaa gaacttttaa aaatttctca agtaaaagct tatgaaatcg
    51481 ataatgatct catacctatt ttaaaaaaga aatttcaaaa agaacttgaa tgtggaaaat
    51541 ttaacttgat ccatcaagac gcaagcgaag cttttaatcc tagtcttgat gaaaaaccat
    51601 attttttggt tgcaaatttg ccttattatg ttgcaagtca cattatatta aaagctttag
    51661 aagataaaaa ttgtctaggg cttattgtaa tggtacaaag ggaaatggct gaaaaattct
    51721 gcgctaaaga aggaaatagt gagttttctt ccttaggtgt tttaagtgca atgatttgcg
    51781 aaagaaaaat actttttgat gttgatccac aatgttttaa tcctccacca aaagttatgt
    51841 cagcggtgat gagtttgatt aaaactaagg attttgatga actttgcgaa atagaaaatt
    51901 tcaaaaattt tctaaaagat tgttttaaag ctcctagaaa acaactctta ggaaatttaa
    51961 aaacatataa agcaaaagtt ttagaagttt taagcactct tggcttaaaa gaaaacatca
    52021 gaccacatga aatttgcgtt gatttatacc ttaaaattta tgacaaatta aaggatgaat
    52081 atggacgaaa acaaagagat aaataaaaac gaacaaaatc cgaactcaaa ttcaaaaaac
    52141 aataaacgct ataaatataa aaatcgtaga aaaaaattag ctgattcttt gcaaaatgaa
    52201 aatgatactc caaaaattga tcaaaattcc aacaaggaaa attctgaaaa ctcagaaaat
    52261 aaaactgaga aaaaaaagaa gaaaaatcgc aatcttcctt caaaactcac aggtaatgaa
    52321 gattggcaaa tcgctcttgc agaatgcata gaagctaacc gtgtttcaca tgaaaaccgc
    52381 ttacaccctt taaaatataa taattctagc gagcataaaa tccgcatcac tcctttagga
    52441 ggtttaggag aaattggtgg aaatatcagt gtttttgaaa ccaataaaga tgcaattata
    52501 gtagatatag gtatgagttt tcctgatgga actatgcatg gggtagatat tatcatccct
    52561 gattttgact atgtaagaaa aattaaagat aaaattcgtg gtatagtgat cactcatgca
    52621 cacgaagatc atatcggtgc agtgccttat ttctttaaag aattccaatt tcctatctac
    52681 gctacacctt tggctttagg aatgatttca aacaaatttg aagaacatgg cttaaaagca
    52741 gaacgcaaat ggtttcgccc tgtagaaaaa cgccgtgttt atgagatagg cgaatttgat
    52801 atagagtgga ttcatatcac acattctatc attgatgctt cagcacttgc gatcaaaaca
    52861 aaagcaggaa ctattatcca cacaggtgat tttaaaattg atcaaacccc aatcgatggc
    52921 tatccaacag acttaggacg tttggcacat tatggagaag aaggggtttt atgtctttta
    52981 agcgatagta caaattcgta caaagaaggt tatacaaaaa gtgaaagctc tgtagggcca
    53041 acttttgatc aaatttttgc acgtaccaaa ggcagggtga tcatgagtac ttttagttct
    53101 aatatccacc gtgtttatca ggctatcact tatggtttaa aatacggcag aaaagtttgt
    53161 gtgatcggtc gttctatgga aagaaatctt tataccacta tggaattagg ctacatcaaa
    53221 cttgatagaa aaattttcat cgatgctgat gaagtaagca aatataaaga caatgaagtg
    53281 cttatcgtaa ctacaggaag tcaaggcgaa accatgagtg cgctttatag aatggcaact
    53341 gatgagcata aatttataaa aatcaaacct acagatcaag tgattatttc agctaaagcc
    53401 ataccaggaa atgaagcaag tgtttctgcg gtgcttgact atcttttaaa agcaggagct
    53461 aaagtagcgt atcaagaatt tagtgaaatt catgtaagcg gacacgctag tatagaagag
    53521 caaaaactta tgctaaccct taccaaacct aaatttttct taccggttca tggagaatac
    53581 aatcacatca ctaaacacaa agaaacagcg atgaagtgcg gtatccctga aagaaatatt
    53641 tatcttatga gtgatggcga tcaagtagaa ctttgccaaa aatatgtcaa acgcataaaa
    53701 accgtaaaaa caggtaaagt ttttgtagat aatcaaatca acaaacaaat cgccgatgat
    53761 gtagttatag atcgccaaaa acttgcagat agtggcatag tggttattat cgcacaaatt
    53821 gacaaagcca caaaaacact gatcaataaa ccaagagtat ttagctatgg gttagtagct
    53881 gacaaacacg atcatgcttt tagcaaagat atggctgaag ttttaggaca atttttcatc
    53941 aatgttaaag atgaagtact caatgatcca agatttttag aaaatcaaat ccgccaagtc
    54001 ttaagaaaac atatctttag aaagattaaa aaatacccaa ccatagttcc aactattttt
    54061 gtaatgtaaa aaagggcaaa aacgcccttt taaggaagat caaatgagaa ttaataaatt
    54121 tatatcccat aacactcgtt attcacgccg tgaagctgat gaacttatca aacaaggctt
    54181 agtaaaaata aacaacaaaa ttgccctttt aagcgatgaa gttcaatttg atgataaagt
    54241 ctttgttaag ggcaaaagag tgcaaaaaag aacgcaattt agcgtgataa tctaccataa
    54301 acaaaaaggt gaaattgtca gtaaaaaaga cgatcgtgga agaaaaacta tatacgatac
    54361 cttgccaaga caatttagta cttggcttag cgtaggtagg ctggattatg caagcgaggg
    54421 cttgcttttg cttacagatt ctcctgtgat tgctgatgct ttaatgcata gcgatttaga
    54481 aagagaatac taccttaaag ttaaaggtac ggtgagcaaa caagtcatcg aagccatgca
    54541 aaatgggctt gagattaaaa atgaaaaaaa aggcgcacac gcaaaaacca aaatcacctc
    54601 tatgagtttt gctcctttta tagactttga aatttttgga tcaagtggag gttatactaa
    54661 gcttagagtg gttataaatg aaggtaaaaa tagagagctt agacgctttt ttggacattt
    54721 tgatcttgaa gtcatggatc ttaagcgtgt tgcttttggg gctttagatc ttggtatgtt
    54781 aaaggcggga aaacatcgct atttggaaaa tggagaatat gaaaaattaa gagatttttt
    54841 gaaatttaat gaaataagat attgaccatt atatgcaaaa atttaaaaaa taatgataat
    54901 ttttaaattc taaaaattct atttttatcc tttttaaaag gaaaataata gaaaaatttc
    54961 atcaaattcc ttgactttga aaacaagatt ttatatactc tcatttcaat ttttataaat
    55021 tggttagttt ttaactaacg agttcttttt aaaggaaata ttatggaaag aattaggctt
    55081 aagctaaaag cttatgacca tcgagtacta gacagaacag ttgcagcaat cgtagaagct
    55141 gttaaaagaa caggtgcgga tatcagaggt ccgataccaa tgcctactaa aatcaaacgc
    55201 tatacagttt taaaatctcc acacattaac aaagattctc gtgagcagtt tgaaataaga
    55261 attcacgcac gtatgctaga tatagtagca gcgactccag atacagttga ttctttaact
    55321 aagcttgatt tagcgccaga agtaagcgtt gaagtaagag ctatgggtaa gtaaggataa
    55381 gatatggaat atattgtaga aaaaatcgga atgagcagaa caattactaa tccaagtatc
    55441 gctgtaactt tactaagagt tgtaaatgca aaagtatgtg aagttgaagg cggaaaggct
    55501 ttagtagcat atccaaaagg taaagcaagt aataaatgtg tcgcaggaca acaaaaaaag
    55561 tataatcttt ctgcagaata caatagattt gcgactttag aagtagcaaa tactgaagca
    55621 ggagatttag atgaaactcc attaaatgaa gcaaaaattt taaaagtaag ctttaacact
    55681 aaaggtagag gttatagcgg tgttatgaaa agacataact tcgcaggggg tccagcaagt
    55741 cacggttcta gatttcacag acgccacgga tctattggca atagagaatg gccaggtcgt
    55801 gttcaaccag gtatgaaaat ggcaggacac tatggaaata ctaaagtgac cgttaaaaac
    55861 gaagttgtat cttatgatgc tgaaaacaaa attttagtag ttaaaggtgc agtaccaggt
    55921 tataatggtg ctatgggtaa aataaggatt gcaaaatgag taaagtagtt gttttaaatg
    55981 ataaattaga aaaagcaggt gaacttgatt taccttcaaa atatgcggaa gtaaatccac
    56041 acaatcttta cttatatgta aaatcttacc ttgcaagttt aagagcaaat acagctcata
    56101 ctaaaggtag aagtgatgta agtggtggtg gtaaaaaacc ttggagacaa aaaggtcgtg
    56161 gcggtgctag agcgggttca acaagaacta acgtttgggt aggcggtgcg gttgcttttg
    56221 gtccaacaaa tgaaagaaac tacttccaaa aagtaaataa aaaacaaaaa agattggcgc
    56281 ttgaaagagc tttagcagat aaagcagcta agggagcgtt atttactgct gattctttgg
    56341 ctattgaaag tggtaaaaca aaagatgcaa acgctgtgat taaaaaactt ggcgtcaaag
    56401 atgctttaat cgttaaagat ttactagatg aaaaaacact tttagcttac agaaatttag
    56461 caaattgcta tgtagttgat gtaactgaag taaatgctta tttagtatct gtatttaatg
    56521 ctgttatcat agaaaaatca gcgttagaat ctattacaaa agagggataa ttatggcaga
    56581 tattactgat ataaagacta tactttacac agaaaaaagt ttgaatttgc aagagcaagg
    56641 tgtcgtagtt attcaaactt caccaaagat gactaaaaca ggcttaaaag cggttttaaa
    56701 agagtatttt ggtgtaactc caaaaagcat caattcatta agaatggatg gaaaagttaa
    56761 gcgttttaga ggtcgtttag gtcaaagaaa cgattacaaa aaattctatg ttaagctacc
    56821 tgaaggtgtt agcttagaaa atacggaggc ttaagatggc aattaaaact tataaaccat
    56881 atactccaag tagaagatat atcacaggtt taagttctga agatattaca gctaaaccaa
    56941 gtgtacgctc actacttgtt aaacttccag cacacgcggg tcgtaacagc tatggaagaa
    57001 ttacaagtcg tcataaagaa gcgggtgcta aaaaacttta cagaattatt gattttaaac
    57061 gtcgtaaatt cggtatagaa ggcaaagtag aagcaatcga gtatgatcca tatagaaatt
    57121 gtagaattgc tttgattgct tataaagatg gggaaaaaag atatattctt caaccacgtg
    57181 gattaagcgt tggtgatata gtttcagctg ctgaaagcgg acttgatatt aaaccaggca
    57241 atgcaatgaa acttaaaaac attcctgtgg gtactattgt tcataatgtt gagttaaaac
    57301 caggtaaagg cggtcaaatg atccgttccg caggtgctta tgcacaactt atgggtaaag
    57361 aagaaaaata tgttatttta agacttgcaa gtggcgaaat gagacaagtt ttagctgaat
    57421 gtatggcaag tatcggcgaa gttggaaatg aagaatgggc taatgtaact atcggtaaag
    57481 caggtagaaa tcgccataga ggtatccgcc cgcaaactcg tggttctgca atgaacccag
    57541 tagatcaccc gcacggtggg ggtgaaggta agaaaaattc aggccgtcat ccagtaactc
    57601 cgtggggtaa accaaccaaa ggtgcgaaaa ctcgtcgtaa aaaggctagc gataagctaa
    57661 taatttcaag aagaaaagga aagtaagatg gctagatcac taaaaaaagg tccttttgtt
    57721 gatgatcatg taatgaaaaa agtcatcgct gctaaaaagg ctaatgataa taaaccaatt
    57781 aaaacttggt caagaagaag cacaattact cctgatatga taggacttac atttaatgtt
    57841 cataatggta aaagcttcat tccggtttat attactgaaa atcacatcgg ttataaactt
    57901 ggtgaatttg ctccaacacg cacattcaaa gggcataaag gctctgtgca aaagaaaatt
    57961 ggtaagtaag ggataagata tgagtaaagc attaattaaa ttcataagat tatctccaac
    58021 taaagcaaga ttgattgcta gagaagttca ggggatgaat gcagaattag ctatggctag
    58081 tttaaaattt atgccaaata aaggtgcaaa atacatcgca aatgcaattt caagtgcagt
    58141 agcaaatggt ggctttgaag caaacgaagt ggttgtaaaa agttgtcgtg ttgacgcagc
    58201 tgcggtatta aaaagattta gaccaagagc tagaggaagt gcaagtcgta ttagaaaacc
    58261 aacttcacat attttagtag aagtggcaaa agcagaagtg aaagctgaag agaaaaaaac
    58321 agtagctaaa aaagctccag cagctaaaaa gactactaca acaaaagctc cagctaaaaa
    58381 aacaacaagc actaaaaaag caacagcgaa aaaggaaagc taatgggaca aaaagttaat
    58441 ccaattggtc taagactagg aatcaataga aattgggaat caagatggtt tccgactaaa
    58501 gcaaatttag tagaaaatat cggtgaagat tacaaaatca gagctttctt aaaaagaaaa
    58561 ctttattacg caggaatcag tcaaatttta gtagaaagaa ctgctaaaaa acttcgcgtt
    58621 actgtagttg ccgcaagacc aggtatcatc atcggtaaaa aaggtagtga tgttgataat
    58681 ttaagaaaag aattgcaaga tttaatcggt aaagatgtaa atatcaatat caaagaagaa
    58741 agaaaagcag gagcttcagc tcaacttgct gctgaaagtg ttgcaactca acttgaaaaa
    58801 agaattgctt ttagaagagc gatgaaaaaa gtaattcaag gtgcgcaaaa agcaggtgct
    58861 aaagggatta aagtttcagt ttctggtcgt ttaggcggtg ctgaaatggc aagaacagaa
    58921 tggtatcttg aaggacgcgt tccacttcat actttaagag caaaaattga ttatggtttt
    58981 gcagaagcta gaactactta tggaaacata ggggttaaag tatggatctt taaaggtgaa
    59041 gtattgcaca aaggtatgca acctgaaaaa actgaagaaa gtgctccagc taaaaagcca
    59101 agacgcacaa gaaggggtaa ataatcatgt taatgccaaa aagaactaaa tatcgcaaaa
    59161 tgatgaaagg gcgtaacaga ggttatgcta atcgtggaac agaatttact tttggtgaat
    59221 ttgcattaaa agcaactgaa gcaggacgca ttaactcacg ccaaatcgaa gcagcgcgta
    59281 tcgctttaac tcgttttgtt aaaagacaag gaaaaacttg gattagagtt ttcccagata
    59341 agcctttgac aaaaaaacct ttagaaactc gtatgggtaa aggtaaaggt gctgttgaag
    59401 aatgggtaat gaatatcaag ccaggtcgta ttatttatga aatggcagga gtaagcgaag
    59461 aaatggcaag agaagcattg actttagcta tgcataaact tccatttaaa actaagtttg
    59521 ttacaagaga gagccaaaat gaaatatact gagattaaag ataaaacagc agctgagctt
    59581 gcaacaatgc taaaagaaaa aaaggtgctt ttattcactt taaaacaaaa gctaaaaaca
    59641 atgcaactta ctaatccaaa agagattagc caagtaaaaa aagacattgc tagaataaat
    59701 acagcaatta acgctttaag ataaggatag aaaatggcat ttaaaagaga aattcaaggc
    59761 gttgttgtta aaatcgctgg tgaaaaaacc gcaagtgttt tggttgaaag aaaagtggtt
    59821 catccaagat atagaaaaat tgttaaacgc tttaaaaaat atctaattca tgatgagaga
    59881 aatgaagtta aagtgggtga tactgttgtt gcagtagaat gcagaccact ttcaaaaaga
    59941 aaatcatttc gcttaaaatc tgtattagct acaggagttg agtaatgatt caaagtttta
    60001 caagacttgc agttgctgat aatagcggtg caaaagaatt aatgtgtatc aaggttttag
    60061 ggggtagcaa aagaagatac gctaccgtag gtgatgtaat cgttgcatct gttaaaaaag
    60121 ctttaccaaa tggaaaagtt aaaaaaggtc aagtggtaaa agcggttatc gttagaacta
    60181 aaaaagaaat tcatagagat aatggttctt tgattcgttt tgatgaaaat gctgcggtta
    60241 ttcttgacaa caaaagagag cctatcggaa ctcgtatctt tgggccagtg ggcagagaag
    60301 ttagatatgg tggctttatg aaaatcgttt cactagcacc ggaggtatta taatggcggt
    60361 taaattaaaa atcaaaaaag gtgatagcgt taaggttatc acaggcgatg ataaaggtaa
    60421 aacaggtaaa gttttagcgg tatatccaaa aacacttaaa gtggtagttg aaggatgtaa
    60481 aatcgctaaa aaagctatta agccgagtga gaaaaaccca aatggtggtt ttatcaataa
    60541 agaaatgcca atggatattt ccaatgtggc aaaagttcag gagtaagcga tgatgagatt
    60601 aaaagaaaaa tataatcaaa gcattaaacc tgcattggtt aaagaatttg atattaaaaa
    60661 tcctatgctt atccctgtga tcgaaaaagt agttatcagc gtaggtgctg gtgagttggc
    60721 taaagatcaa aaagtattgc aaaatgttgc agatactatt tctttaattg caggacaaaa
    60781 ggctgtgatt actaaagcta aaaaatcagt tgcaggattt aaagttcgcg aaggttttcc
    60841 tgtgggtgta atggtaactt taagaaaaga aaatatgtat gcttttcttg ataaattaat
    60901 ttctattgct ttgccaaggg tgaaagactt tagaggttta agtagagatg gttttgatgg
    60961 acgcggaaac tataacttcg gtcttgatga gcagttgatg ttcccagaag tggagtatga
    61021 taaaatttta agaactcatg gtatgaacat ttctatagtt acaacagcac aaaatgacaa
    61081 acaggcacaa aagttattag aacttatcgg tgtgccattt acaaaaggaa agtaagatgg
    61141 ctaaaaaatc aatgattgca aaagcggcac gcaagcctaa atttaaagtt agagcttata
    61201 caagatgcca aatttgtggg cgtccgcatt cggtttatag agattttgga atttgcagag
    61261 tttgcttaag aaaaatgggc aacgaaggtt tgattccagg tcttaagaaa gcaagttggt
    61321 aaggataaaa tatgataaat gatattattt cagattcact cactcgtatc agaaatgcag
    61381 gaatgagaaa gcttgaaaca accaagcttt tacattctaa agttgtagaa gctttagttg
    61441 gaatttttca agctaagggc tatattgaga gttttaatgt tattgaagaa gataaaaaga
    61501 aatttatcaa tgtagtttta aaatacgatg aaaaaggtaa gagtgttatc aatgagctta
    61561 aaagaatttc taagcctggt cgtcgtgttt ataaaggtaa agatgaaatc aagcgtttta
    61621 aaaatggtta tggtactatc gtagttagca caagtcatgg cgttttagct aatgatgaag
    61681 cttataaagc aggtgttggc ggcgaaattt tatgtaccat ttggtaaaaa atctgctttt
    61741 tatggcattg ggtatccatt cttttaaaaa agtagaaata tcctagacaa ataaaaagga
    61801 aaaatatgtc tcgtataggt aaacaaccga ttgctattcc agcaggagta gaagtaaaat
    61861 tagaaggaaa tttgcttaaa tttaaaaaag gaaatttagc aaaagaactt gatactaaag
    61921 caaatgtaaa tgttgagatt aaagataata atattctttt ttctccaaaa ggtgaagaca
    61981 gacaaagtag agcttattgg ggaacttaca gagctttagc ttacaatatc gttgtaggtt
    62041 taactcaagg tttttcaaaa actcttgaaa tcaatggagt tggttataaa gcagctttaa
    62101 aaggtaaagt tttagaacta agccttggtt tttctcatcc tattaattat gatattccag
    62161 aaggaattga aattgtagtg gataaaaata ctattgcagt taaaggaagt gataaacaag
    62221 ttgtaggtca agttgctgct caaattcgtg aatttagacc accagagcca tataaaggaa
    62281 aaggcgttaa gtattctgat gaacgcatta tccgcaaagc tggtaagaca tctaagaagt
    62341 aagggtagaa tatgagagca aatgtattaa aaagaaaact aactttaaga atcaaaagaa
    62401 aaaaaagaat tagagcgaaa atttcaggtt gtgaaaattt tccaagaatt tctgtattta
    62461 aatcaaacag aactctatat atccaagcga ttgatgatgt aaaagctgta actttagcag
    62521 cagttgatgg acgcaaactt ggcgttaaag caaataaaga aggtgctaaa aaaatcgctg
    62581 ctgaatttgc taaaacttta aaagctaaaa agatagaaca agctgttttt gatagaaatg
    62641 gttatgtata tcatggtgtt atcgcagcat tggctgaatc tttaagagaa aatggcatta
    62701 ggctataagg ggtaaatcga tggaaaaata taatagagaa gaatttgaag aagtaatcgt
    62761 cgatatcggc agagttacta aggttgttaa aggtggtaga agatttagat ttactgcttt
    62821 agttatcgtt ggaaaccgca aaggtttagt aggtgttggt tatggtaagg ctaaggaagt
    62881 tccagatgcc atccgtaaag ctgttgacga tgcgtttaaa aatatcgttg aagttaaaac
    62941 taaaggctca actatcgctc acgatgtaga ggtgaaatac aacgcaagta gaattttact
    63001 taaaccagct agcgaaggta caggagttat cgcaggtggt tctacacgcc ctatcgtgga
    63061 acttgcaggt attaaagaca tcttaaccaa gtctttgggt tcaaataatt cagctaatgt
    63121 ggttcgtgct acaatcaaag ctttaacaat gttaaaagga taagaagatg aatttaacaa
    63181 aagcagcggg ttcaacgcgt aaaactaaaa gaattggccg tggtcaaggt tctggcatgg
    63241 gtaagactgc tactaaaggg ggtaaaggtc aaactgctag aaaaggttat aatgaaaaaa
    63301 gaggttttga agggggtcaa caaccacttc aaagaagact accaaaagta ggttttactt
    63361 ctaaaattca aaaaccttat gtgatcaatg ttgaaaaaat cacagctgta aaagagctta
    63421 gtgaaattac atttgagagc attaaaagtg ttcacaaaat ttcaaaatct gtgaataaaa
    63481 tcaaattaat tggtgcaagt gcaaaagact tagtaccaaa aatcaaagac gagaatatta
    63541 gcgtcaccgg atcaaaataa tgaatagagc attgacgaat aagattttaa tcaccttagc
    63601 atttttattt gcttataggg ttctggctta tgtgccagtt cctggcgtca atgctgatgt
    63661 gattgcggaa ttttttaata acaatcaaaa caatgctttg ggtttattta atgtttttag
    63721 tggtggagcg gctgaacgct tttctatcat ttctttaggt attatgcctt atattactgc
    63781 ttctattatt atggagcttc ttgcagcaac ttttccaaat attggtaaga tgaaaaaaga
    63841 gcgtgatagt atgcaaaaat atatgcaaat tatccgttat gcgactattg tgattacttt
    63901 ggttcaaagt ataggcgttg ctataggttt gcaaagcttg cacggtcgtg gtggtgcagg
    63961 ggctataatg gtggaagatt taaatatgtt tatcgcactt tgtgctattt ctatgcttgc
    64021 tggaactatg cttttaatgt ggcttggcga acaaatcaca caaagaggta taggaaatgg
    64081 tatttcttta atcatttttg caggtattgt ttcaggtatt ccaagagcga tttcaggaac
    64141 tgtaggacaa atcaattcag gcgagatgaa tttcttaacc gcttttgcaa tttttgcttt
    64201 gattttaatc accatagggg tgattattta tatagaactt ggagaaagaa gaattcctat
    64261 ttcttattct cgtaaagttg taatgcaaaa tcaaaacaaa cgcattatga attatattcc
    64321 tattaaactc aatcttagtg gggttattcc accgattttt gctagtgcga ttttgatgtt
    64381 tccaacaaca attttacaaa ctagtacaaa tccttatcta caagccatta atgacttttt
    64441 aaatccaaat ggttatttgt ttcatgttct aactttcttg tttgtaattt tctttgctta
    64501 tttttatgct tctatcgtat ttaacgctaa agacatagca gaaaatttga aaaaacaagg
    64561 cggttttatc cctggaattc gtccaggtga aggaacttca agttatctta acgaagtggc
    64621 ttctcgttta actttatcag gttctattta tttagggctt gttgcaacct taccttgggt
    64681 tttggtgaaa tttatgggtg tgccttttca ttttggcggc acttctgtac ttattgtagt
    64741 tcaagtagca cttgatacga tgagaaaaat tgaagctcaa atttatatga gtaaatacca
    64801 aactttaagt gcggtaggtt tgtaataaat aaaattagca agatttttct tgctaattta
    64861 ttctaggttt ttgctttaaa aataaaaaca caatgcacac tataaaaatt actattgacc
    64921 atattaaaaa agcatctaca agacccattt gtctaacgat aggttgagag ataataggac
    64981 ttaaaaattg tcctaaaaat atacaacttg ctaaaattcc ataagcccta gagcgagcat
    65041 tttcaggaca gattgaaaaa agataagccg tattatttac aagcataata cctccaccca
    65101 ttccaagcaa agctaaggcg attaaaactg tgaaaaagct atctactaaa aaaagcagca
    65161 aaaaagaaca agatacgata aaaagagtta aaacataaat agttttaata cttaagaatt
    65221 ttataatata tctatagctt agagagaaaa aaccataaca tagtgcagat acagacatcg
    65281 aaatacctat atatttagga tccaatccca aatgttcttc tatatagtaa ggaagttgag
    65341 ttggcgaaat ataataaact accatgataa aaaaacctat aaaatagata gggaaaaatt
    65401 gccaataatt tgtttttgtt tctatttttg tatgattata gaatttaaat tttctaggtt
    65461 caaaaagata aatgatagcc attaaggtaa ttaaaattcc aagtccatat accaaaaaag
    65521 gataacgcca agaataactt gaaacaaatc ccgcaataga aataaaaaca gcacccccta
    65581 ctgcacaaaa aaatccttga agacttaaag cattttctct gcgattaaag ccaccacgac
    65641 tataataatc cccaagcaaa gccgaagcgc ctgtcattat aaaagcagtt gccataccaa
    65701 aaatagctct tgaagtcagt atagcataaa tatcatttaa gaaaaagcca cttatcccag
    65761 aaatagtcca aaccaccata gctggaagaa tgaattttaa tttgccaaat ttatccatta
    65821 aaataccagc aaatggagat aaaatgacaa caaaaatagc agggatggtt aaaactaagc
    65881 gaacaagtat atcaagatga gctaatgtga aacttgaagc aagagtagcg ccactttggg
    65941 ttaaaagttc ttcaaaatgt ctgttgatag caggcagagc agatgaaatg accacacttc
    66001 ctagcatagt catagcagcc atagaaaaca cagctacttt aaatccggac ttttcagtaa
    66061 tttgaattat ttttttatcc atttttgtgt catttggatg aaatttataa attttgtcat
    66121 tcataatttt tacctttttt attttattat actccaaaaa ttatggtttg tatttaaaat
    66181 tacttaaaat tatattttat ttattttgtt atggtagttt tgtttttaaa atattttagc
    66241 ttgattaaaa tatattttat aagtagaatt ttaaatattt ttagctaaat tcagcttttt
    66301 atttaacaag ggtgcaaaat gaagaaaaat ttaatcatag tagaatctcc tgcaaaagct
    66361 aaaaccatag gaaatttttt gggaaaagat tatgaagtta tcgcttctaa aggacatatt
    66421 agagatttgc ctaaatcaag ctttgggatt aaaatagaag atgatgaatt tatccctgag
    66481 tatagaatca caagtgatca tagcgcctta gttaaagaac ttaaaagcaa agccaaagat
    66541 gccaaagaag tctatcttgc aacggatgaa gatagagaag gagaggctat agcctatcat
    66601 attgcaaaag ctataggaaa agatgaaaac accttaccac gcattgtttt tcatgaaatc
    66661 actaaaagcg ctatagaaaa tgctttaaaa aatccaagaa aattaaacat gcactctgta
    66721 aatgctcagc aaaccagacg tcttttagat cgcattgtag ggtataagct cagcccttta
    66781 ttaggacaaa aaattcaaag aggacttagt gctgggcgtg ttcaaagtgc ggctttaaag
    66841 atcatagtcg atcgtgaaaa agaaattcgt gcctttgtac ccctagaata ctttagtatt
    66901 gatatgattt ttcaaaaaga tttagatgca gaactggttg agtttgacaa agctaagata
    66961 gaaaaactta ccattaccaa caaagatcgt gctaagctta tactagaggc ttgtaaaaat
    67021 gaagcttatg ctataagcga cattgaaagc aaagaaagaa aaatcgctcc gcctcctcct
    67081 tttatgactt caaccttgca gcaaagtgcc agcaatcgcc ttggttttaa ccctaaaaaa
    67141 accatgatga tagctcaaaa gctctatgaa ggagtaaata cccatgaagg cgtgatgggg
    67201 gttattactt atatgagaac cgatagttta aatttagcca aagaagcagt agaaaatgca
    67261 agaaaattca tacaagcaaa ttttggcaag gactatcttc caagcaaagc aaatgtatat
    67321 actacaaaga ctaaaggcgc tcaagaagct catgaagcta tacgccctac aaatttaagt
    67381 tttactccag aaattgcggc taaattttta gacaaagatg agttaaaact ttacacactt
    67441 atttacaatc gctttttagc ctgtcagatg agtcctgcta tctctcaaac tcaaaatgta
    67501 tttgtaaaaa atgatagagc agtttttaaa ataagcggta gaaaaatcct ttttgatgga
    67561 tattataaag tttatggtga tatggataag gataaaattt tgccaaattt taaaataggc
    67621 caaaatttaa aagtgcaaaa tttagaaatg aactcacatt ttaccgaacc accttcaagg
    67681 tattcagaag caggacttgt aaaaaaactt gaaagtttag gcataggtcg cccttctacc
    67741 tatgcgccaa ccatttctat acttacaagc cgtgattatg taacaataga taaaaaacaa
    67801 ctcattccta gcgatgttgc ttttaatgta accgaagtgc ttgagaaaaa ttttagcgat
    67861 atagtagata gtaaatttac ttcaaacctt gaaaataccc tagatgaaat cgcagaagat
    67921 aaggcagatt ggcaagaaac tttaaaagaa ttttactatc cttttatgag aaaaatcgaa
    67981 gaaggaaaaa caaaaatagc tagtcaaaaa actgtcacaa aactaggcga aagttgtcct
    68041 gattgtggcg gagagcttgc tattagaaaa gggcgttttg gagaatttgt agcgtgttta
    68101 aatttcccaa aatgcaagta ttcaagaaat ttaaaaagtg aaagcaaaaa cgaaagcgaa
    68161 aatacagccg caaaagctaa agctaatggt acaggcatta cttgtccaag ttgtcaaaaa
    68221 ggtgaaatcg tagaacgctt ttcaaaacgt ggtaaatttt atggctgtag tgcttatcca
    68281 aaatgcaatt ttataagcaa atacaaacca agtgaagaaa aatgcgaaga gtgtggcgaa
    68341 actttagtga taaaagagct taaaaaaggt acattcttag aatgtttaaa gtgtaaaatc
    68401 aaaaaagaaa tgaaggatta gaatgcaaat catgctttgt gctatttcaa atatagccag
    68461 tggaaattgt tcagaagact gtaaatactg cacccaaagc gctcatgtaa aaacagatat
    68521 tcaaaaatat cgtcgtaaag aactttcaca aatcgtttta gaagcaaaaa tggcaaagaa
    68581 aaatgaagcc ttgggttttt gtttggttac ggcaggactt gggcttgatg atgaaaagct
    68641 tgagtatgtt tgcgaagctg ccaaggctgt gcaaaaagaa gtacctaatt tgcttttaat
    68701 tgcctgtaat ggtatggcaa gcgtggaaca actcaaagaa cttaaaaaag caggaatttt
    68761 ttcttataat cacaatcttg aaagttctaa ggaatttttt ccacaaattt gcaccacaca
    68821 tacttgggaa agtagatttc aaaccaattt aaacgctaaa gaagcagggc ttatgctttg
    68881 ttgtggtgga atttatggta tgggtgagag cgaagaagat aggctaagtt ttagaaaatc
    68941 tttgcaagaa ttacaacctt tttcaacgcc tattaatttt tttatagcaa atgaaaattt
    69001 aaaactacaa gttccaagac ttagtgctga tgaagcttta aaaatcgtgc gtgacaccaa
    69061 agaggctttg cctcaaactg taatcatggt tgcaggtgga cgtgaagtgg tattgcaaga
    69121 aaggcagtat gaaatttttc aagcaggtgc tggggctatt gttatagggg attatttaac
    69181 cactaaaggt gaagaaccaa gtcaagatat aataaaatta aaagaaatgg gatttacttt
    69241 tgcatcagag tgtcattgat ccacaaggtt taattgatct aaaaattctt attgttatag
    69301 ctttatgctt acttttttct ccgcatattg caaaaatttt acgcttgcct ctttcagcta
    69361 ctgaaattat tttaggggca ataatagcat attttggttt cataggaaaa agtgaaaatt
    69421 ttgcactttt agccaatgta ggtttttatt atctaatgtt tatagcgggt atggaggtaa
    69481 atttaagagc cttttttaat atggataaag aagtcgccaa aaaaagtttt ttttatattt
    69541 ttttacttta cgctttatct tctcttatag tatggatttt tggactttct ttagtatttg
    69601 ttatcattat acctgtgatg agtgtagggc ttttatcttt gctttttaag gattttggaa
    69661 aagagtgtta ttggctaaat attgctatga tagtggctac tttagctgag gtgatttcta
    69721 ttgtgctttt gactatagcg ggagcttttt tgcgcgaagg aacaggtatt attgatgtag
    69781 cgcaaagtat tttatatctt aatatctttt tgggactttg tttgctcgga tttaaaatgc
    69841 ttggtgtgct tttttggtgg tatcctcagc ttaaagttgt gcttatgcca tgggaagata
    69901 aaaatgaaaa agatataaga ttttgtatgg ccatttttat actgatcatt gttgctatgg
    69961 ttattacaaa acttgaaatc gttcttggtt cttttatagc aggttcattt atagctactt
    70021 tttttgatca taaaaaagat cttgagcaca agctttctac ttttggacac gggtttttga
    70081 tccctatttt ttttatccat ataggttcaa cctttgatct taaaatgatt ttagattata
    70141 aaatcgtttt acaagcattt ttacttatgt ttgttatggt gggtttaaga attttatgtg
    70201 caagtgtttt tttaaaaaga attggtttta aaaatatgat tttatttggt cttagtcatt
    70261 ctatgccttt aaccttgctt atagcaacag ctactctggg ttattcgggc aaggttattg
    70321 atgagaagct ttattcagca cttattttaa cagcgttatt tgaggctgtt attgttatga
    70381 gtatgattaa atttctttct aattctaaaa aatgaaagtt acttttttac tcaaaaaagc
    70441 aaataaaatc ttaaaaattt aataataaaa aaactcataa tcgtcctttt ttgttagaat
    70501 taataaaagt aacaataaaa ggagcgaaaa tgtcaaattc cgttactata accgataata
    70561 gaaatggaaa aagctatgaa tttcctatat atgacggtac aactgggcca agcgttgtag
    70621 atatgtcaag tttttataaa caaacaggaa tgttttctta tgatgagggc ttgacttcta
    70681 cagctacttg taaatcaaaa atcacttata ttgatggaga aaacggaatt ttaatgcacc
    70741 gtggctatcc tatagagtgg cttgctgaaa acaaacttta tttagatgtg gttcatcttt
    70801 tgctttataa agaattgcct gatgctacgc gtcttgaagc atttcgttat gaaatgaaaa
    70861 agcgttcttt tatccatgaa ggtatgcatc gtctttttga ttctttccct gataatgctc
    70921 atcctatggc agttttacaa ggtgctgttt catcgcttag tgctttttat cctgatcatt
    70981 taaacatgaa tgtaaaagaa gaatatatgg aaatggcagc tagaatagta gctaaaatcc
    71041 ctactatagt ggctactgct tatagatata aacacggctt tcctatggct tatccaaatt
    71101 tagatcgtgg ttttacagaa aatttcttat atatgttaag aacctatcct tacgatcatg
    71161 tagagcttaa acctatagaa gtaaaagcac ttgatacagt ttttatgctt catgcagatc
    71221 atgagcaaaa tgcttcaact tcaacagttc gtgctgtggg ttcaactcac gctcatcctt
    71281 atgcctgtat agcagcaggt attggtgcgc tttggggtca tgcacatggt ggagctaatg
    71341 aaggtgttat tagaatgctt gagcaaatag gtagtgttga tagggtagat gaattcatca
    71401 aaagagctaa ggataaaaac gatcctttcc gcttgatggg ctttgggcat agggtttata
    71461 aaaattttga tcctagagca aaagtactta aaaaacttcg tgatcaactt attgatgagt
    71521 tgggtattga taccaatctt attaaagtag caacgcgtat agaagagatt gctttaagtg
    71581 atgattattt tgttcaaaga gggctatatc cgaatgttga ttttcatagt ggacttattt
    71641 taaaagcctt aggtattcca aatgaaatgt ttgctacttt atttgttata ggacgcaccc
    71701 caggatggat agctcagtgg atagagcaaa aagagcaaga aagtcttaaa atagtccgtc
    71761 caagacaact ttatttgggt gaaactagta aaatataatt aaaatttttg tggaaattaa
    71821 aaattccaca aaatcttctt gtataatttt aaaaaatctt atagaaagtt tataatcatg
    71881 cttaatcttg ataaattttt agaaattgct ataaatgcta gcaatcaagc ttctaaagct
    71941 attttagaag agagaaaaaa tttcaaaact tgggaaaaag aagataaaag cccgattaca
    72001 tcagcagatc ttgcttctaa taaaattcta aatgatattt tgggttctac ggatattaaa
    72061 attctatcag aagaaaaatt actcagcaaa gaagagtgtg aagaattaaa aactttttgg
    72121 cttatcgatc ctcttgatgg aacaagtggt tttttaaaag gcagtgatga attttgcgtt
    72181 atgataagtt tggttcatga caatcgctct gttttatcac tcatacaaaa tccatcaaaa
    72241 ggtgatatat tctatgctca tgcaaaaacc aaggtttata aaaacgataa acctttgcaa
    72301 attgaccagc aagaatacga gaaaaataaa tataaagcct tattgagtgt taatcatctt
    72361 agcaaagaag atgaagactt tgcaaaagag catcaattag aagctattaa tataggctct
    72421 ggattgaaat tttgtgctat tttagaggct agggcaggag tttataaaag atttgaaaag
    72481 cttaatattt gggatattgt agcaggagat tttttgatta atcaaaatgg aggatttatg
    72541 ggagattttt ctaaaaaata cattttatat agccctttaa attataaatc cagtcctttt
    72601 atttgtgttt catctaggaa ttttttacaa gattttttat aaaataaaga gtataatttt
    72661 atatttaaat agtttataag gatgaagatg aggtattgtt tcattttgtt tttaagttta
    72721 gttttaagtt ctaatctttt agcgaataat ttttctcaga aaaaagttat taaaattgaa
    72781 aaaagcgcag atagttttga agtaatagat ctaaatcaaa atgttgcaaa tccaaatcta
    72841 aatcaacaaa aagcattgtt tgatagttct accttgattg aaaaaaaatc gcaaatcacc
    72901 aaagataaag atattgattt tgccattgta ttaacttcta ggaaaaattt tggttatttt
    72961 ttagatggtt ttagggtgag tgataaggaa ttttctacat tatttgctaa aaatttgatt
    73021 caaagtttaa ggcttgattg ggttaattct gctgcaaatg gtatttatca aagtcctaaa
    73081 actttgtcat attttagccc taaggatgca aaacttataa atgtcagtcc ttttttaaca
    73141 caagaaaaag ataaggctaa aatgtatgcc aaatttacag attatgttgt ggtggtaaat
    73201 ttgcaagatt tttatgtaaa tattacaaat tattttatca caactagtaa agagggtgtg
    73261 gctagtgtta attttaaaat tatttctaca agcaatggaa aaattcttgc agcaaaaaat
    73321 gcaaaattaa atttgatatt aaaagatcaa gatacaaaac aaaattatca agatattgta
    73381 aatcaaatgc caaaaatgtt agctagtgtt atagataatg aaataaaaaa attaaagata
    73441 tattgaaaaa tttttagata ataatcactt cattttctaa gtttatgcca aattcttcaa
    73501 agactttttt tctagccaat ttgataagaa aaaacgcatc ttcaaaactt gcattttttt
    73561 tattgattaa aaaatttgcg tgtttatcgc ttaacatagc atctcccttg ttaaatcctt
    73621 taagtcctac agcttcgatt aaacgtcctg caaagtcgtt ttttggattt ttaaagatag
    73681 agccaaagct tgctccatta ggttggttgc ttcttgcatt ttttaaagct tcatctttaa
    73741 gggtatcaaa gccaaaattt agtttaaatt cagcccaaaa aaaaggcata tttaaaggac
    73801 aaaaacgata atcaaaattt atattttctc ttagaatttc gccttgagaa gtagcaattt
    73861 tgattaaatt ttgactgata cactctcctt taagccctgc attcattttc aaaagaccac
    73921 caagtgtgcc aggaattttg cttaaatact caaaaccctt aagattattt tctttagcaa
    73981 agcgatatat tttacttgat tttgttttgc agcctatgcg aagatgtata aaatctttat
    74041 tttgatctaa aatttgtata aaattaaaac catctcctaa aattcctata tttttaggtt
    74101 ttggactaac taaaaggttg tttgcaccac ctattaaaaa accatcaaaa tcacaaattt
    74161 gatccaaaac taaaacttca aattcatttc ctatacgcac agaagagtat tttttaaaat
    74221 caatgatcat ttgataaaag ttggaatttg atttagtata ttctcagtaa aatcaatcat
    74281 agttgtagtc atccaaggca ttaaaaagat taaaataact acaaccaaga tgattttagg
    74341 aacaaaagaa agtgtcattt cgttaatctg tgtagttgct tgaaaaatac tgatcacaag
    74401 ccctgcaata agtcctgcta aaagcatagg caaagaaagt aaaagtgtga ttttaaaggt
    74461 ttgcactcca agagcaacta aggtactttc atccattttt atccttttta agaatttcta
    74521 gcttcttcgt attcgctagg gataagaaaa tcatttacat gtatgatttt atcataaaat
    74581 ttataatcat atcctagttt aaaaagcgta tctacagcta aaagttgagt ttgattcatg
    74641 ctaatagagt ttttattggc atataaatta agataagtat caagtttttc ttcatcaaca
    74701 cggataagtt ttctttccat aagcataggg gctaaaattt tacgatttgc atcggcaatt
    74761 tttacagcat tggttaaatc tctttcgatc ttaatcgcgt cgcttaaagg taaagaacga
    74821 cgcaaagcca ttccacctaa aggcaaaggc aaattttctt tagcaaattc aagccatata
    74881 tcccaaagtt ctgcttccac gtaaagactt tgatcaaaat ctaaaatgct ttcatggatc
    74941 aaaacccccg catctacttc gccacttaaa accgcatttt caatgtctaa aaaattctta
    75001 taaataattc ttgcttcagg atatttcatg cgaaaaatca aagcattggt ggtatttgct
    75061 ccactcaaag cgactttaaa atttcttttt aaatgcgtgt cttttttctt gatgagtttt
    75121 ggcccataac cttcaccaaa actcactgct gtgcgtaaaa gtgcatactc agaagcgatt
    75181 aaaggataaa gcccaaaaga aatagccgta gcatcaaatt catttttcaa ggcaaattca
    75241 tttaaagttt gtatatctaa agctgtattt tcataagcaa aatcattccc tatccaccca
    75301 aatttaattg ccatatacat aaaaatatca tcagcatcag gagaatgtgc aatagtaatt
    75361 tttttcatct atgcttcctt taaatctttg ctttaattct agcaaaataa atcattattt
    75421 aattttattt tgttagaatt ctaactaaaa atttagaatt tttaaggaaa gttatggatg
    75481 ataataaaag aaaatctcta gacgctgccc taaaaagttt agataaaacc tttggaaaag
    75541 gcactatttt aagactaggg gataaagaag tcgagcaaat cgatagcata ggcacaggtt
    75601 cagttgggct tgatcttgct ttaggtatag gcggtgttcc aaaaggaaga attatagaaa
    75661 tttatggacc tgaaagttca ggtaaaacca ctctaacttt acatattatc gcagaatgcc
    75721 aaaaagcagg tggagtttgt gcttttatcg atgcagaaca tgcgcttgat gtaaaatatg
    75781 ctaaaaattt gggtgtaaat acagatgatt tgtatgtttc tcagcctgat tttggagaac
    75841 aagccttaga aattgtagaa actatagcaa gaagtggcgc agtagatctt atcgtagtag
    75901 atagcgttgc agcgcttacc ccaaaagcag aaattgaagg cgatatgggc gatcaacatg
    75961 taggacttca agcaagactt atgtctcaag ctctaagaaa acttacaggt atagttcata
    76021 aaatgaatac cacagtaatt tttatcaacc aaattcgtat gaaaatcggt gctatgggtt
    76081 atggtactcc tgaaaccaca acaggtggaa atgcattaaa attttatgct tctgtgcgtt
    76141 tagatgttag aaaagtagca accttaaaac aaaacgaaga acctatagga aaccgcgtta
    76201 aagtaaaagt agttaaaaat aaagttgctc ctccattcag acaagctgaa tttgatgtga
    76261 tgtttggaga gggtttaagc cgtgaaggtg aattgatcga ttatggtgta aaacttgata
    76321 tcgtagataa aagtggtgcg tggttttctt ataaagataa aaaacttgga caaggtagag
    76381 aaaattcaaa agctttctta aaagaaaacc ctgaaattgc agatgaaatc acaaaagcaa
    76441 ttcaaaattc tatgggaata gaaggtatga tcagcggtag cgaagatgac gaaggagaag
    76501 aataatgtta gtaattgaag atgttagagc ctatgaagtt cttgatagta gaggaaatcc
    76561 aaccgtaaaa gccgaagtta cgctaagcga tggaagtgta ggtgcggcca tagttccaag
    76621 tggtgcaagt acaggttcaa aagaagcctt agaattgcgt gataatgatg aaagatttgg
    76681 cggaaaaggc gttttaaaag ctgttgcaaa tgtcaatgag accattgcag atgaaatttt
    76741 aggactagat gcttttaatc aaactcaact tgatgatact ttgcgtgagc tcgatggaac
    76801 aaataattac tcaaatttag gtgcaaatgc gactttaggc gtatctatgg caacagctcg
    76861 tgcggctgca gctgctttgg gaatgccttt atatcgctac ttaggtggtg caaatgcgag
    76921 cattttaccc gtgccaatgt gtaatatcat aaatggcggt gctcatgcaa acaacaatgt
    76981 agattttcaa gaatttatga tcatgccttt tggttttact agctttaaag aagctttgcg
    77041 ttcagtttgt gaaatttatg cgatattaaa aaaagaactc gcaaattctg gacattctac
    77101 ggctttaggt gatgaaggcg gttttgctcc aaatttagct aacaacacag aacctatcga
    77161 tcttttaatg acttgtatca aaaaagcagg ttatgaaaat cgtgtaaaaa ttgctcttga
    77221 tgtggcaagt acagaatttt tcaaagatgg taaataccac atggaaggca aggctttttc
    77281 aagcgaggct ttgatcgaac gctatgtaga actttgtgca aaatatccaa tttgcagtat
    77341 cgaagatggc ttagctgaaa atgactttga aggctggatc aagctgactg aaaaattagg
    77401 caataaaatt cagcttgtag gcgatgattt gtttgtgacc aatgaagata ttttaagaga
    77461 aggtatcatc aaaaaaatgg caaatgctgt acttatcaaa ccaaatcaaa tcggaactat
    77521 tacccaaact atgagaactg tgcgtttagc gcaaagaaat aactataaat gtgtgatgag
    77581 tcatagaagc ggcgaaagtg aagatgcttt tatagcggat tttgctgtgg ctttaaatac
    77641 aggacaaatt aaaacaggag ccctagcaag aggcgaaaga accgcaaaat acaatcgctt
    77701 acttgaaatt gaatttgaaa gcgatgaata tttaggagaa aagctctgag cgatttactt
    77761 aaagaatacg acgaaagcac aagaaaaaaa agtttttata cccatgttat aaaaatgatt
    77821 ttttgggctt ttcttgttgt aattggagcg atttattttg gcaatatgtt ttttgggcag
    77881 tattctttag atactttatt aagcttagaa aataccaaag aagagcttaa taaaaagatt
    77941 attttgctca aagaacaaaa tgctaaagca caaaaagatt attttgaatt aaaaggatta
    78001 tacccaaatg aaaactagaa ttttggcaat attttttatt tttacctctc ttttatatgc
    78061 tgatgaaaat cctttcaaga cagatcaaaa tataaccttg gttgctccac ctgaatttca
    78121 aaaagaggaa gttaaattta attctagtgc aagaatttta aaaagcatca cttttaatta
    78181 tatcaattta gacggaagtg aagataagat cgatttagat gtcaataaaa gtattgattg
    78241 gcacgatact tatactatat caagatttaa aagccctgat ccttcaaaag tacttgatgt
    78301 ttcagttact atacctgaaa aaaatagctc taaacaagaa tcaaactcaa cagccaatgt
    78361 tgaaatacct ttacaggttg caaagattta tgattttatt tcttatgcgg tttataaaaa
    78421 taaaataaaa cttaacacta gtgatgaaat gattacagat ttttcagtag gaaatccaag
    78481 taaaatcgtt atagatttta gatctaaaat gattagccct acaaaaaaca tacgccttag
    78541 caattctatt tttaaacgca tagactttgg atctcataaa ggatattatc gacttgtaat
    78601 atatcttgat ggaacttata attataatat tcaaaaagat gcaactggat atatgattaa
    78661 tctgctttga tgaggtttgt ttttttaata tgttgtgctt gtttagtttt tgctaatgaa
    78721 attttacttc ttagcaaatt cgataagcaa gattttaact ctaaagattt taatgcttat
    78781 ttgatgagcg aaaaacttga tggagtgcgt ggaatttggg atgggaaata tctaaaaact
    78841 cgccaaaact acaaaataaa aactcctgac ttttttacaa aaaatttccc tccttttgct
    78901 attgatggtg agctttggat agcaagaaat aaatttgatg aaatttcagc tttaattcgt
    78961 agtggcgata gcaatttgac cttatggaag gaagtaactt ataatatttt tgatgtacca
    79021 aatgcttgcg aagaatttca aatttctact tgcactctta aaaatcgttt ggctgtttta
    79081 gaagagtatt tgcaaaaata tcctagtgcc tatataaaaa ttatttctca aattccagtt
    79141 gaaaatcaaa ataatttaaa tcaattttac gaaagcatta taaaaaatca aggtgaaggt
    79201 attgttatac gcaaaaattt aagtccttat gaaaaaggca gaagtaaaaa tgccacgaaa
    79261 ttaaaaccct atgatgatgc agaatgtgag ttggtaggat ttcgcaaggg caagggtaaa
    79321 tttgaaaatc aagtaggtgc cttactttgt aaaatgccta atggacaaat cattaaaata
    79381 ggcagtggtt taaaagatga agatagaaaa aatcctccaa aaattggtag tattgtgact
    79441 tataaattta atggattgac caaaaattcc ttacctcgct ttccggtgtt tttaagaata
    79501 agagatgaaa atccttgact ttaaaattat tttgtgataa aatatttcct tttatttatt
    79561 cggggtgtag cgcagtctgg ttagcgcact tggtttggga ccaaggggcc gaaggttcga
    79621 atcctttcac cccgaccatt ttttataaat ttatacaaaa tggtgagtgt agctcagtcg
    79681 gttagagcat cagattgtgg tcctgagggt cgtgggttca attcccatca ctcaccccac
    79741 tagcgctcgt agctcaactg gatagagcga cagacttcgg atctgtaggt tatgggttcg
    79801 attcctatcg ggcgcaccac caagatttta tatgcgttca tagctcagct ggatagagca
    79861 acggccttct aagccgtagg tcagaggttc gaatcctctt gggcgtacca ctttgcggat
    79921 gtggtgaaat tggcagacac gccagactta ggatctggtg cagcaatgcg tgaaggttca
    79981 agtcctttca tccgcaccac ttacttttat cattttcaaa taagagttga tttctcataa
    80041 atttttattt cattttaaaa tttcttatga ttgttagata aaatgcaaat ttaatttaga
    80101 taaatttaaa aattatcttg caaaagattt gaaaaataat tcaaatatac aaaattcaat
    80161 tcaaggagat aaaatgaaaa aattaggttt agttttagca gttttagttg ctttaaatgt
    80221 gtcagcattt gcagatttga tagttatcaa taaaaaagat ttagttccag tttcagcaag
    80281 cgaaatgcaa aacaaatatt tccaagagag tataaaatca actttaactg agccactttt
    80341 taaaaaggca actttttatg aagcagatat tgttgcaaaa gttgatccaa gaacttataa
    80401 ttcaactcaa gctataatac aaaaagaata ttcagataaa agcaattatg tttattataa
    80461 acaagttctt atattaacta gtgatggtaa aagagctaga ttatctactc tttcttgcga
    80521 aattgcaagt tttgataaga aggggtattt atgtggaggc acagctgatc ataattattc
    80581 tattaagtaa atattgcaaa taaaaatccg ccttgagttt tcactcttgg cggaaatcca
    80641 ccattagaac atactatgaa aaaacatagt aagtataaaa tatatctaaa ttttaagctt
    80701 tttaagttaa aaatttctag ttttttaaat cgttttatct tttatatctt tgctgcaaag
    80761 acaaaatcaa cactcattaa aagtcttttc ttgattaaat ttttgtaaat tcatttttag
    80821 tgttaaaaat gtgatgatat taactttata aaagtattat tatatatttt ttacttagga
    80881 tagcaattat gaaaaaaaca attttaacca ttcttttttt actcactctt acgcaggcta
    80941 aggaaataca aatttatgaa agtcctactt gtggctgttg tgatctttgg gctgattata
    81001 tgaaagctaa gggttatgag gttagtgttc ataaaaccaa tgattttctt aaaatcaaag
    81061 aaaaaatggg tataaaagat gagtatcaaa gttgccatac aggtgtgatt gaaggctatg
    81121 ctattgaagg gcatgttcct gaaagtgcta tagcatggtt gcttgaaaac aaacctaaag
    81181 atgttatagg aatttcagct cttggcatgc cgcaaggaag tccaggaatg gaacaaggtt
    81241 atagtgaaaa atatcctgta attttgatga aaaaagatgg aagctatgag ctttatggat
    81301 attttatagg ggataaaaag ctttaaagta aatttttagc tttttacttt tttgatttct
    81361 ttttcaagta tgctataagg agttaagcct atgaattttt catccatttt tccttctttg
    81421 aaaaaactaa gcacaggtac tccatatatt tccccaatgg cacttgaaag gtatttagct
    81481 gctctttttt cataaaacat tgctaaatta gataaacctt tttcatcagc ccaagctttt
    81541 gcatcgtttg catcgtttgc atcgcctaaa accacaaaga tattaaaatc ataattttta
    81601 gccaaattct gtaaaatagg aatttgttct ttgcaaactc cgcaatcttt tgtgaaaaat
    81661 actaaggcaa aattttgtgc tttatcattt agttttaggc ttttttcaaa accattgtag
    81721 gcaaaattat aggttttatc gctatttaaa gctttaaaat tttctccact atcacaagct
    81781 acaaaaaata aagctatgat taaagcaaag aaataagctt ggattcgaaa aattcccatg
    81841 gtttttctcc taaaattcta tcttttatca tcccatcttt aatgatgatg gtagtagggg
    81901 ttgcaaacac agcgtaacga tcattggtga ttttaagatc gtcttttaaa acttttacat
    81961 ttttaaagtc aaattgttcg gctaaaacct taaccacatt ggcattatcg atggaattta
    82021 tagcataaac actgatttta ttggggtgat tttgtatgaa ttcatctaaa gaagggagtt
    82081 cttttaagca agaagggcag ccattttgaa aaaagactaa gacttttaaa cttgtattat
    82141 catcagcaag ttttacagct tttcctaaag tatctttagc tgaaatttca gcgctttttt
    82201 ctccaacttt tccagtatct tttgaatttt caaaagaaca agcattgagt aaaaacaaaa
    82261 tacttaagat taaaaggctt tttttcattt taacacccca tgttgtaaga taagggttcg
    82321 atctgcgaat ttggctaaat caggattgtg tgtgattaaa actatggttt taccttcatt
    82381 ttttaatttt tgcaaggttt gaagaacgat ttgttcattg gcttcatcta aatttcctgt
    82441 gggttcatct gcgagtaaaa gctctgggtt gttgattaaa gctcttgcta tacaaactct
    82501 ttgttgttct ccgccactta attggctagg taaatgagtg agtctatgcg aaagtcctac
    82561 tttttcaaga accattttgg catcttcttc atctacactt gagtgataat actgagagag
    82621 cataacattt tctaaggcgt taagataggg gataagatga aattgttgaa agacaagccc
    82681 tattttttca cgacgcaagg tgattttttg ctcttcatcc atttgctcta ggttttcatt
    82741 atccaagata tactctccag agcttggagt atccatgagc gatagtatgt ttaaaagtgt
    82801 tgattttcca cttcctgatg gacccatgat ggcaagccat tctccttcat agacgcttaa
    82861 gttgatattg tttaaggctt taactttgcc aaattcttta tttaaattgt ttattttaat
    82921 aagttctttt ttcatcattc acctttcaaa ttttcacaca cattgatttt taatgctctt
    82981 tttataggaa aaaatgcagc caaaaaggca aaaatcaaag aaatgattaa ggctataaaa
    83041 acagctataa atctaaaatc aatactagaa ttaaaaatta aataaccaaa gacattggct
    83101 aaaaatatcc cacaaaaagc tccgattaaa ctagcaaaaa aacttactat aaagcattca
    83161 ctagcaaaaa gtttaaaaat ttcacttttt ttcgcaccca aggctaaacg cagtgcgatt
    83221 tcttttttgc gagaaaatat aatagaactt aaagttgtat taacactagt agtaactatg
    83281 atcaatacca caagtatgat taaaaacatt aaagctttga tttttccaag cactaaacct
    83341 tcacttaagg atactgaaga tataggtttt gcatcgatga attcattgct gattgcttgt
    83401 gttttggctt taacttcatc aaaatttcca taaactacag cattagcata gttaataccg
    83461 gctctatcgc ttaaattttg caccacgctt aaaggggcta aaacaatgct atcaaattca
    83521 tcattgcttg aaagtatgcc ttttatggta agttttatgc tttttccgtt gtttggatta
    83581 taaatttgaa gttcattgcc tgcttttagg cctagttgct tggctaaatt aactcctaaa
    83641 aaggctgaat tttcatcaaa atcatttaga gaaaagcttc cttctttaac ttctaaaaaa
    83701 ggtttagtga tttttaaagc cctaaaatca gtgcctaaaa ccaccccgct tgtactgcct
    83761 aaatttaaaa aatcatacaa aaaaggagtt aaagctctag cctttaaatt ttcttttatt
    83821 ttttcatact cagtattgga gataaaattt tcatcctgct tgggacttat cattacattt
    83881 gctccataag cttttaattc tttagaaagt ttgatgtcga tatcaaaata aatatttaaa
    83941 aaagctgagc aagtaagtgc tcctataaaa acacttaaaa ctataataaa aagtctttga
    84001 taagaaaagc taatgctttt aaaaagctca ttgaggaaaa acttatctac cataaagcac
    84061 tcctgcagct gaaagttgtg tgatattttt gataggaagc aagcaaccaa gtaaggcaat
    84121 aagtcctgca aaaataaagc ttaaaggtaa agctacaaag gctatatcaa taaaatatcc
    84181 aaaaatacta agactgatga tttgagaaag tgctgtgcca aaaataaatc caaataaagc
    84241 agcaaataaa gctacgatta aattttcact agcaaagatg agataaattt gaaaagtatt
    84301 agcaccaagt acttttaaaa gtcctatttc tttttttcta cgatgaattt cagaactcat
    84361 tagacttgaa atcgcaatac ttgcaacaat aagacaaata atgcaagtaa tgcccattaa
    84421 ggattggatc tttttaacca ccaagctttg agcatcgctt atagcattta gagcttttgc
    84481 atcagcacct ggcaagccat cgctaatttg actagcgatt gagtctacat aagctgagca
    84541 ataccatttg tcatattcta actgatctaa tttttcttcg cccatgcgac gtactttttc
    84601 agaaagggct gattcaggta tggtaaaagc tcttacttct gcacttgagt aaagcccttg
    84661 tttgttgagt aaatcttgag ctaaatttaa aggagcgatg attttatttg acattttagg
    84721 attggcatga agtaaaatgc ctacgatttt tgcttctttg ctttgattgt tttctcctat
    84781 gagtttgata gtatctccta attttagttt attgttttta gcaaagtctt cgcctagcat
    84841 gatttcatta ctatcatctt ttgcccattc tccttgcact gctaaataag gataaagact
    84901 ttttatacct gtgataaaat catcatcatc tttaattttt atggcttttt gaaaataagt
    84961 accataaata agtgcttttt gttgggagtt ttcaattgtg attttacctt ccaaaaaagg
    85021 agcaagtgcg gtgatgttgt tacgccaata aatgtcttta atcatatata aatttttttc
    85081 ttctagatag tttttgtttt ttaagggttc ataaagttca ttacctattt ctatactaag
    85141 gcttgagcct ttgggtaaaa caaggatatt agagccatag cttttgagtt gtttagttac
    85201 ttcatcacct atacttaggg taatatttag catagtagag agcaaaagcg tggctaaaaa
    85261 acaagtaaga aaggctaaaa atttttgaat tttgttttta aatatagagt taaaaatcat
    85321 tttagccaac atcatttctc ctttggatta aaaattgggc ttcgttttct tctacatatt
    85381 ttgtaggatc ttttttaaat tcttcatagt tgttttgatt tgaaaaataa taagcaatcc
    85441 ctttatagct ataagaaaaa ggagcttggg tgtttataac ctttgttttt gatacaggat
    85501 cttgcacttc aatttctttg atttgactaa aataattaga tcctgctatt acatctttaa
    85561 catctatggt gattttttta ccatcgtatt cgtatttgag tgggatagga ttgcaacccc
    85621 cgcttttacc tacacttggc aagaaaatac gcacattgca agaaatgcaa atgagttgtc
    85681 catctttttt gatatagccc atatctccac aaatcataca agcatcaaaa acagctacag
    85741 gagaatcctt atcttctctt ttgttgataa gaaaaaacct tatcactttg ccttcagcac
    85801 tgatataagc aaagcggtgg agtttgttat cccttaaaag agctatatca aagataaatt
    85861 tgccattctt atcgggtaaa atttctttag gctcatctat ggttaaaggc ttagagctta
    85921 ccataaaaaa gtataaaaca atgcaaaaac ttataacaca ggagataaaa acactggaaa
    85981 aatagcgatt aataagactt gttttagctt cgtttttgcg ataatttata tctaaaattt
    86041 gttttttgct tatatttttt ttgcgaattt ttaagcttaa gaatgctaaa aaagtgatga
    86101 aaattaaata aacataaatt ccaaaaacac caaaataatt actttttcct acaaaactca
    86161 ccaaaaaagc atgagtttct atgatggaat ttcgcattaa agtaagcaag atattggcta
    86221 gagctttatc gctttctata aggataagca gtaaaaacag cataaagctt gttttttgat
    86281 taaaattttt ttgccatttt aaaaagaaga aaatcaaaat acaaacaagc aaggctaaag
    86341 caataaaacc taaagaactt ataccttcgc tatcgattaa agagctagta aaaataggga
    86401 aatcttgact taaaaaataa taatgcaaag cggtgcaaaa acttaaaatt cccaataaaa
    86461 taaaatttaa aatttcaatt tttttccaaa aataaaatat aaagcttact agcaataaac
    86521 ctataaaaac aaaatcaaaa ttaaagatta aattttcggt ttttaaaaat tgtgctgcga
    86581 taaaaaaagc aaaatatcca aataaaaagc ccaaaaaaac tactaaaaaa cttttaaaaa
    86641 tatatttttt attaggagtg ataaaggcca ttaaaatact tagcggtaaa acactgataa
    86701 gaaaatgcac aaaatatata ctcataattt actctttaaa catttttatt ttaatttttc
    86761 aaataaaaat aaaaatattc aaacactcgg aaaatccgag cgtaaaatta ttttggcgtg
    86821 cctgtgtatt tgaatttata atctacttta aaaggttcaa accacttacc cacacctgtt
    86881 tcttcatcaa catggcgtcc aaaaccttgt ttttctggat ttgagatata aaaagtaagt
    86941 tcataatttc ctacgccaaa gccacctttt ttatcttttt ccatagcaat atttgcacca
    87001 tagtgaggac catcatcagc caccataggc atcaaagttc cacgtttaat tgcacctgtg
    87061 tcggtatttt taagttcata agctatagtt aaataaggca tccaaaaacc ttctggaaaa
    87121 ccatttggat tgtttttaag tgcgtgaatg tcagcttcta ggtgaatatc tgctaaagat
    87181 gcagctaaat caatacctct tggctccatt tcaataggtt gtaaataaac agcggctatt
    87241 tccatgccat taagttcttt tggatcgccg atcggcactt cgcccgcaaa taaatttgta
    87301 ctaataaccg cagctgcagc aactactgat aaaacttttt ttatcatgat tttactcctt
    87361 tttttgaaat ttgttttgtt attaaaatgc caataattag cataattaaa actataaatt
    87421 gagggattaa agtttcatag taaggataaa ttccaagcca taaaatcggt tcaaaattca
    87481 taggtataag accaggaatg atgacttttc cttctatgag ttcggctatg cctttgcctg
    87541 taaaaacaaa aaccatgtaa aaaataatgt aagaagtgat atagaaaaat tgttttacag
    87601 gtatgcgaat ggctcctgct tttaaaagaa aatataaaac aataagtatt aaaattccaa
    87661 gtccaagtcc gccaaaaaca gcaccaaaat cagtgcttgt tttagcatca aaaagcaagg
    87721 cttgataaaa aagcacagtt tctgcacctt ctctataaac agctaaaaat acggtaatcc
    87781 aaagggtttt tgcgctatta tttgatatag catctatagc accttgtttg ataaagcttg
    87841 tccatttttt attttgtgcg tttgaaagta gccaaaagcc cacataaaag agtagtaata
    87901 cggctataag catggtaata ccttctataa gctctctact ttgacctgca ttttctttaa
    87961 atagccaaga aactccaaaa gcggtaataa aacttaaaat cactcctgta aaaagagcac
    88021 tataggcgat atttagacga tttttgttgc cactttgcac aagataagaa acaatggcta
    88081 caatgataat caaagcttcc aagccttcac gcaaaataat acctaaagcc catataaaca
    88141 gcgaataagg agtagaatct tgaattttat ccacgctgct ggctatgagt tgttctaagt
    88201 cattaaaagt agcttcaagc tcttttttat ctgcacttgc tttaatcagt gccatgcctt
    88261 tggaaaataa actttctatt ttaagtttta agccactatc tacagcaccg attttatttt
    88321 ccataccgct tgcttcaaaa atatctagat aaattccttg taaatcatct accatagaag
    88381 tgctaaagcc atcataattt tttaaaattt catctaaagc aagtttgata tcattagaaa
    88441 ctttggcata atctttgcct tttgtttcat cattaaagcc tgaaatttgc aaacttgaaa
    88501 gttctgaatt tggaatttgt aagaaaacat caaaaatttg ttcttctatg ttatctaagc
    88561 catctcttaa gcctttttca tctatttttg catcgttgat ttggcgtata agggtgcgta
    88621 tggcttgttg aattttttga tcgtttcctg ctttggtaaa tttatttact aaaatttcta
    88681 ctttggtatt gcgataatca ctaaataagg catcatttaa aaaatcttta ctagtttggt
    88741 agtttttttc tttaaaagca ttagctgcct gtgaaaattt ggtagagata ttatctagta
    88801 taaattgcaa tcttacgtcc attgcagcgg cagcttgtaa atcagtgctt gcattatcat
    88861 ctataagttt gcttgtatca ttatttacag gtataggagc ttgggtggtt aaagagcttt
    88921 gtgctaaatc ttttttatct acacccatca tttgtgcgat taaagcttct gcatcagctt
    88981 cgcgtttggc attggcttct aggcttgatt tttcagcttt agccttatca tagtttatat
    89041 cgcttgcttc tgcttttaaa cgatatccat tttgtaaaat cggagctact tcatcaagat
    89101 cataataaag actatcaatt aaagcattaa tttgtgttaa aggagcttca tctttataca
    89161 tgcgacgcaa atttacaaat ttacgttcca tagtgatagt ttttcttcct atgtttcttc
    89221 ctattgggcc ttccatattt tcaaaatgtt gaaaatacgc atcttcgcta agctttttgg
    89281 cgcctagatt atcgcccttt ttataagttt ctatgctttg ttttagcata tctttgataa
    89341 gatttgcttc attaatataa tcatctaccc tagcaaaagc tgagcttgat aaaaaaatac
    89401 ctataattaa aaatataatt ttaaaaattt tcattatcat tatccttgat ttttgataaa
    89461 aataatattt attatc
//
LOCUS       DARGEY010000002        61926 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.002, whole genome shotgun sequence.
ACCESSION   DARGEY010000002 DARGEY010000000
VERSION     DARGEY010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 61926)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 61926)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..61926
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.002"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            24..623
                     /locus_tag="SF008_000101"
     CDS             24..623
                     /locus_tag="SF008_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG8232416.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFKLATKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKNIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDVSFEAAEDEDNEYPQFYLYTCN
                     CPGKIHDVPYSIHQKIELQGHKFTCKTCKQAIKFYKKYS"
     gene            634..882
                     /locus_tag="SF008_000102"
     CDS             634..882
                     /locus_tag="SF008_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HEG8232417.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSTIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLKQTK"
     gene            complement(971..1045)
                     /locus_tag="SF008_000103"
     tRNA            complement(971..1045)
                     /locus_tag="SF008_000103"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1011..1013),aa:Asn,seq:gtt)
     gene            complement(1138..2385)
                     /locus_tag="SF008_000104"
     CDS             complement(1138..2385)
                     /locus_tag="SF008_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8232418.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVILGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKILFRGDVLARVEVNNGL
                     IEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKRLKKQIDKFAQGKLGDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     IMHELKTPITKGLLTLEMIEDNKYKERLNGVFTRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDSNIRIFMEESFFVNVDFKLFTTAIKNMIDNGIKHSEDGF
                     VQIDIIDDYICFKNRGPELNNTLEYYTQAFTQGSKQKSSFGLGLYIVNTILETHGMKL
                     DYLYEDGVNLFYFRNLKSVIVKE"
     gene            complement(2382..3056)
                     /locus_tag="SF008_000105"
     CDS             complement(2382..3056)
                     /locus_tag="SF008_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8232419.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIVSSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            complement(3132..4550)
                     /gene="htrA"
                     /locus_tag="SF008_000106"
     CDS             complement(3132..4550)
                     /gene="htrA"
                     /locus_tag="SF008_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HEG8232420.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTATANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFPQRKGKNDKEVVSS
                     LGSGVIISKDGYIVTNNHVVDDADTITVNLPGSDIEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTILALQGDTKKAYKNQEGALITDVQKGSSADEARLKRGDLVTKVNDKVIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGVQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLVLK"
     gene            4750..5643
                     /locus_tag="SF008_000107"
     CDS             4750..5643
                     /locus_tag="SF008_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HEG8232421.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNTGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEEILDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEATINITPNSKNNQKIRLKGYGVQNRKSDIYGDMYLILNV
                     VLPNLDTLDEKFIELLKEKLP"
     gene            5659..6033
                     /gene="hspR"
                     /locus_tag="SF008_000108"
     CDS             5659..6033
                     /gene="hspR"
                     /locus_tag="SF008_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HEG8232422.1"
                     /translation="MEQHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRLELSKQQDK
                     EAASKAVVKHKNNFDLIFYEKK"
     gene            6039..7664
                     /locus_tag="SF008_000109"
     CDS             6039..7664
                     /locus_tag="SF008_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEG8232423.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTSLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            7674..8006
                     /locus_tag="SF008_000110"
     CDS             7674..8006
                     /locus_tag="SF008_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232424.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKNELLNLANALDKQKKQGEKKEKH
                     KNYLKDYE"
     gene            8003..8623
                     /locus_tag="SF008_000111"
     CDS             8003..8623
                     /locus_tag="SF008_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG8232425.1"
                     /translation="MINVFFDMDGTLIDSANAISCAVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSSFKEGYEKYFVKHYEQSVVLFEGVKELLEFLKSKNCFL
                     AIATNAPQSSLSNILKKHDIIPYFDKILGVSLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKNLKENEFSNASELKGFLQKYL"
     gene            8679..10673
                     /locus_tag="SF008_000112"
     CDS             8679..10673
                     /locus_tag="SF008_000112"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HEG8232426.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWSNVLEEYRLVSDFKF
                     YYTPRRLVFFHENFADKQEDSFAEFIGAPKNVAYKDGVLTPAGQSFLQKARISENELS
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMVEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     ACILNDELVNFQSYGVKSTKKTFIHRSVSYDLQDFNNAKEYFELLEKNYIILDPIKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPSEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYQICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKEFDIQILLEKLSNHYKSFD
                     MQILKDFIFERLYTFYTVNASFVKAVLSSHNTDLIHINQSVNALIKLSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            10670..11491
                     /locus_tag="SF008_000113"
     CDS             10670..11491
                     /locus_tag="SF008_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG8232427.1"
                     /translation="MKALWLFLSLTLWLFGAQNLELIKGQALFLELDKKDFLSLKNNG
                     KNIPTFTHPKNQEKVLAIFSLPYKNPPQNTKLIAFYKDKKEEIFIKTLEGNYKSEKLQ
                     VENKKIFPPKTIQERITKELKEANAIYSSYTPKALFNGAFNIPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRAATGTPIYAANSGIVKIAKDRYFAGNSVVIDHGFGIYSQYYHLS
                     KIDVKIGQKIKKGEFIGLSGATGRVSGPHLHFGILAGGKQVDPLDFVSKFNAIFQ"
     gene            11488..12438
                     /locus_tag="SF008_000114"
     CDS             11488..12438
                     /locus_tag="SF008_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEG8232428.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLNLIDKKILQLPLELVEIGANEGYLSRDFLAALLELRPEIFSQISFFVIEPHEKLR
                     TLQKKTLEGVEFTHKNSLKECHFKNAFFFCNELFDSFACELIDHDKMAFVENFKLIFK
                     NMDENLITKCKALNLKKGELSLELENFFKDLNQTCERFIFAGFDYGTLNPQSFSLRIY
                     QKHEVFSPFKVSLKNFFCKSDLTYNVNFTHLQKLIKEYDFKPLAFKKQSLALMDFGFE
                     DLLEYTKNKNIKTYESFLSQAKILFFNFDEKFHFFEFQKN"
     gene            complement(12435..13409)
                     /locus_tag="SF008_000115"
     CDS             complement(12435..13409)
                     /locus_tag="SF008_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEG8232429.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNTLSILAKEQDLSKARAVATAAFRKASNTNEIFAHLKKEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFGKSFKSFDFGIISFYEKNYHSY
                     YKSCISYKKLIKKYPKFIINIKDKKLKIHFLIANPYLKHLAFRAFDEVAMIKKELRSL
                     GAKTVVLNSGVPTTLSALKQNISYEKYEATKVNGKKLYHKDFLNYAIKLFHMEEKKAI
                     KEVGAMRKNYLSAGCLLFYALFDKHKLLVIDEGLREGVCLASMKNIKF"
     gene            13465..14238
                     /locus_tag="SF008_000116"
     CDS             13465..14238
                     /locus_tag="SF008_000116"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HEG8232430.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIVARHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPINLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHAKLRQSIEKLQNANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYANLHNAL
                     FSNISHTAFGLKELNQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGLNYKNVK
                     PVVKIKEICELNIGQSIVARSVFTGLQNAILEMKELIKR"
     gene            14235..15329
                     /gene="pdxA"
                     /locus_tag="SF008_000117"
     CDS             14235..15329
                     /gene="pdxA"
                     /locus_tag="SF008_000117"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HEG8232431.1"
                     /translation="MKKLAISIGDINGIGLEILVRSHEELSKICTPFYFIHESLLDKA
                     SKLLNLKLFNAKIVAFKDGKDYEFNFVKKENSLEIYSFYLPLGFKVDENFEIKAGEID
                     TKSGLYGFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKMGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNAFLHSKKDEKFFKKALKDENLQKELLLNFKGRGVYLP
                     YPLVADTAFTKTGLKNCNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKINTKSYFEAAKFAINLHSKA"
     gene            complement(15319..15921)
                     /locus_tag="SF008_000118"
     CDS             complement(15319..15921)
                     /locus_tag="SF008_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232432.1"
                     /translation="MKKIILLLGLSLASLGALSFDELIYKDEVKPSFDCSKIKYDGKS
                     DDELMICNKIGVRNEFDNKKLALVDNIYSSLYQNISKKADKKMKKDFKAISKKMLKER
                     KICIKNMQNTKAGENPILSLLNASDCMQEAYIKVLLELMQRAKKDTKTKEVLEQIFKN
                     KVDKYENLLTQSLNTNKDLQDFIDSLAKEDLIDSRAKFKL"
     gene            16034..17233
                     /locus_tag="SF008_000119"
     CDS             16034..17233
                     /locus_tag="SF008_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8232433.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTAFARF
                     IAGTQHGVFFVIATLAVSAITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKILVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLARLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSFTKV"
     gene            17289..17609
                     /gene="ciaC"
                     /locus_tag="SF008_000120"
     CDS             17289..17609
                     /gene="ciaC"
                     /locus_tag="SF008_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HEG8232434.1"
                     /translation="MVVDNTQKTSNAIFSTTTKVKEKNTSADEFQATLNEVKNKEEKE
                     DKKTNSSKFTNEDIDLGAVREDFRSYAWQKMREDQYKKNEETLLNKLFTTIDAGNATN
                     NTKA"
     gene            17793..18815
                     /locus_tag="SF008_000121"
     CDS             17793..18815
                     /locus_tag="SF008_000121"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HEG8232435.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFDNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFEFSF
                     NYMLEISNFIKSKYPNIPVILFPKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVGKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            18812..19714
                     /locus_tag="SF008_000122"
     CDS             18812..19714
                     /locus_tag="SF008_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEG8232436.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIDKIISEVKVMLEKNVEFDFLTLTANGEPSLYPYLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVAKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFEALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPVLLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKV"
     gene            complement(19711..20907)
                     /locus_tag="SF008_000123"
     CDS             complement(19711..20907)
                     /locus_tag="SF008_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232437.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVTEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFCMQNDFLNFQKKIDVDSALDLLKEKFETTSQNLTKIS
                     HEKDRYLHLLEENLYQLVNISNAMRCLNEGYNKEINSLILNALNSQKDQIRLELNEAL
                     EHHKSIIGTSHGKVLQFEASVAIVNNDELENFLLANLLSYFGIESTCFKNLSFDVNDF
                     HLIFIKDKIFNKNVKKNYDFIVMGRHKNTHYEYFLTLPFEKKDLENILQNKLDKVCTL
                     KFKTPYQNNVLLFKQNDFDATLFFNIIEKQCDKNICINSFSQLKQELSKETYRLILLD
                     YELIKFDLEQMRNLLSAYKKQHPQSHIIFFSKEKVRDFDCVSEVLSDVSRNDLITLLR
                     KYLPKA"
     gene            complement(20909..22711)
                     /gene="uvrC"
                     /locus_tag="SF008_000124"
     CDS             complement(20909..22711)
                     /gene="uvrC"
                     /locus_tag="SF008_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEG8232438.1"
                     /translation="MIKENLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFIATNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
                     ASCKSPCIFYQISRCLAPCDKLISREKYLEILDEAIHALLNPSVLLKNLEKQMLVLAQ
                     NENYEEAAKVRDQIAMIKDLEVKVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKI
                     ISANSKITPIRNDIQWDQNEIYKQLILENFSMDIPLLANVIYVYEEFEDRVLLEEILS
                     QRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKFYFELENLPN
                     DIEIFDNSHLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFD
                     KIPPPDLWLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHS
                     LKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANLGLSSGVIQK
                     LLAYYGNFESIYKADFKDLTMLVGRKAAQKIKEN"
     gene            complement(22704..23198)
                     /locus_tag="SF008_000125"
     CDS             complement(22704..23198)
                     /locus_tag="SF008_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232439.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYAANKNKNDEKLSKNSYLELSKGEFKNCFEDKKLFKKFEDLRELIKKG
                     SNLD"
     gene            23337..24872
                     /gene="guaA"
                     /locus_tag="SF008_000126"
     CDS             23337..24872
                     /gene="guaA"
                     /locus_tag="SF008_000126"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEG8232440.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLNLPILGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEVKKDSALFKNLPKKQTVWMSHSDKVENLPQGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESVWNMGSFAKTQAEKIREEVGNDKV
                     LCAVSGGVDSSVVAALLASAIKEQVIVVFVDNGLLRSEEKEQVEFMFKNTLGIDLISI
                     DASEIFLSRLANVTDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGASKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRPGLELLRKADVILLEELKSTGWYDKTWQAFCVLLNVKSVGVMGDNR
                     TYDNAVCIRVVDASDGMTATFSHLPYEVLENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            24958..26418
                     /locus_tag="SF008_000127"
     CDS             24958..26418
                     /locus_tag="SF008_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232441.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKPVQTSKTITGIKPSKFQEFKEGDFITEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMMADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRKNRLASLEAQMKTLQSEINLKSNATDADPEKLKA
                     RQEILAKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIENFSQNPYYLVKYAPKKVNYQSLMRDNT
                     FDIVYIDEKHVWENVADIILQGKHFDKSGKTKFKLI"
     gene            26658..27908
                     /gene="purD"
                     /locus_tag="SF008_000128"
     CDS             26658..27908
                     /gene="purD"
                     /locus_tag="SF008_000128"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEG8232442.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSESFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHSKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            27905..28357
                     /locus_tag="SF008_000129"
     CDS             27905..28357
                     /locus_tag="SF008_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEG8232443.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIVGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAVRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            28347..30395
                     /locus_tag="SF008_000130"
     CDS             28347..30395
                     /locus_tag="SF008_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HEG8232444.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVIIFS
                     DFYFITANKAIYNEKTGDVELFGDVNILRGQNERSHSDYAKINLNSNQADFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKVSAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYIDTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNDPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYILPGAKSGKITQDYLEEYDKENEHTSLYTVQYFYNNEGQK
                     KLKHRISLDYLNKQNEFYELENLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNT
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYIATPNYNLFGGIWFDTQRAHANMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGVYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            30465..32624
                     /locus_tag="SF008_000131"
     CDS             30465..32624
                     /locus_tag="SF008_000131"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEG8232445.1"
                     /translation="MQYSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     AYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHEKNSQIELKNEIEYPEILAFIENNFQKQ
                     IKEAINQMAKSERASELNKIAKEISNLEIAKEWSEESVLNTLAKVKRKLIREQILNEG
                     KRADGRSLNEVRPINIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLEDH
                     DGDMDFKVAGSKDGVTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIMEEAAKKII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGSKDKDISGFELGQEFQGIVKKIAPFGAFVELKNGVD
                     GLLHSSKSKHLNLSENQSLKVKISEIKNGKISVDLCE"
     gene            32621..33103
                     /locus_tag="SF008_000132"
     CDS             32621..33103
                     /locus_tag="SF008_000132"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HEG8232446.1"
                     /translation="MSEFLTHPFEPFFDKDSKILILGSFPSVKSRQDGFYYQHPRNRF
                     WPILETLFDVRLENITEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANNLSPIL
                     SQTKIQAIFTTGQSAYKFFIKFHPRLKAIALPSTSPANLNFSFEQLLQNYEIIKKFTK
                     "
     gene            complement(33146..33808)
                     /locus_tag="SF008_000133"
     CDS             complement(33146..33808)
                     /locus_tag="SF008_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HEG8232447.1"
                     /translation="MEMILFVLVMILLVLLFVVLFRQYKSPKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDAYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     IN"
     gene            complement(33826..35010)
                     /locus_tag="SF008_000134"
     CDS             complement(33826..35010)
                     /locus_tag="SF008_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8232448.1"
                     /translation="MENFNRTLLVCWFGVFTTSMGLSQIAPILPFYIKELGHVDTSEI
                     AFYSGLAFGITPLFMAVFSPLWAFLGAKYGYKNMLLRASFGMSVLTLWLSFAHSALEV
                     VFVRGLTGIISGFTSAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGFVAEF
                     FSISTVFDMVAFLIACSFVTIYFFIHERKIQKEAKKNTQKVKENKTLIIVLFITTFVI
                     QFGTFGVMPILSIYVEQIHQGGNLALWAGIVVAASGISNLFFAPKLGKIADKIGPSKI
                     IFGALIFCGIYFYLQAVVSNVYTLIFVRLLIGVGLGGLLPCVNALLKKSVSAKNLSVI
                     FGFNQTCQFLGNFCGAFGGGIMASHFSVEFVFTFVCLIFIINAFIFLAFEKKYIFSNQ
                     GL"
     gene            35064..35519
                     /locus_tag="SF008_000135"
     CDS             35064..35519
                     /locus_tag="SF008_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HEG8232449.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFISSAGTSG
                     EHDGEGMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTN
                     TQNKVLKITDFSPSLNYDEVPDPWYSGNFDETYKILSLACKNLLVFLSK"
     gene            35771..37045
                     /locus_tag="SF008_000136"
     CDS             35771..37045
                     /locus_tag="SF008_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major outer membrane protein"
                     /protein_id="HEG8232450.1"
                     /translation="MKLVKLSLVAALAAGAFSAANATPLEEAIKDVDVSGVLRYRYDT
                     GNFDKNFVNNSNLNNNKQDHKYRAQVNFSAAIADNFKAFIQFDYNAVDGGTGVDNVTN
                     AEKGLFVRQLYLTYTNEDVATSVIAGKQQLNLIWTDNAIDGLVGTGVKVVNNSIDGLT
                     LAAFAADSFMAAEQGADLLGHSTTSTTQATAPFKVDSVGNLYGAAAVGSYDLAGGQFN
                     PQLWLAYWDQVAFFYAVDAAYSTTIFDGINWTLEGAYLGNSLDSELDDKTHANGNLFA
                     LKGSIEVNGWDASLGGLYYGDKEKASTVVIEDQGNLGSLLAGEEIFYTTGSRLNGDTG
                     RNIFGYVTGGYTFNETVRVGADFVYGGTKTEAANHLGGGKKLEAVARVDYKYSPKLNF
                     SAFYSYVNLDQGVNTNESADHSTVRLQALYKF"
     gene            complement(37160..38281)
                     /gene="dnaJ"
                     /locus_tag="SF008_000137"
     CDS             complement(37160..38281)
                     /gene="dnaJ"
                     /locus_tag="SF008_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEG8232451.1"
                     /translation="MEISYYEILEITQNADKETIKKAYRKMALKYHPDRNQGDKEAED
                     KFKLVNEAYEVLSNDEKRAIYDRYGKDALKGGGFGSSSSGFGGFEDLGDIFSSFFGEG
                     FGSSRRRKSSNDEKIPSDFIVNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDGK
                     LQTCPKCQGRGQVGVSQGFITFAQTCPDCQGIGEKASEKCSDCKGLGYNESKDSVELN
                     IPEGVDTGMKLRVNAKGNILKNGTRGDMYVKIIAAEDDTFIRDDDDIYIEFPVFFTQA
                     ILGESIKVPTIRGEATLNLPKGAKDGQRFVLEKEGVKDVHSSRMGNQIVQISIKFPTS
                     LNDEQKELLEKLSESFGIKDGMHQEQKGLFEKITNWFKS"
     gene            38438..39109
                     /locus_tag="SF008_000138"
     CDS             38438..39109
                     /locus_tag="SF008_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8232452.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            39106..40341
                     /locus_tag="SF008_000139"
     CDS             39106..40341
                     /locus_tag="SF008_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8232453.1"
                     /translation="MTKNYSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAIQNPNLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLKSLEP
                     LKKLRRQVAEVANGEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     SAILEEAKEHLMIDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNALKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFFGDKEK"
     gene            40341..40913
                     /gene="recR"
                     /locus_tag="SF008_000140"
     CDS             40341..40913
                     /gene="recR"
                     /locus_tag="SF008_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HEG8232454.1"
                     /translation="MVKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCEQCGALSENELCEICSDEERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDATIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(40910..41446)
                     /locus_tag="SF008_000141"
     CDS             complement(40910..41446)
                     /locus_tag="SF008_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HEG8232455.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHSEFTLDFVDG
                     GTLALQLSYIIARYDRLIVLDCIEAQGASIGDVFFFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLSKEGFTYE
                     KIADFSLQELADISYKNY"
     gene            complement(41443..42135)
                     /gene="cybH"
                     /locus_tag="SF008_000142"
     CDS             complement(41443..42135)
                     /gene="cybH"
                     /locus_tag="SF008_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HEG8232456.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVILGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKFVKEEKH"
     gene            complement(42146..43861)
                     /locus_tag="SF008_000143"
     CDS             complement(42146..43861)
                     /locus_tag="SF008_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEG8232457.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALSADVKKASDEAFKYTSNPYATGADKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLTPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNHVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIV
                     VNYAKGNQNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGVGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDTKGNNLSEYK
                     VNVNL"
     gene            complement(43864..45003)
                     /locus_tag="SF008_000144"
     CDS             complement(43864..45003)
                     /locus_tag="SF008_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEG8232458.1"
                     /translation="MIDYHQIESRLSTLEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLENAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKMASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(45123..46964)
                     /gene="mnmC"
                     /locus_tag="SF008_000145"
     CDS             complement(45123..46964)
                     /gene="mnmC"
                     /locus_tag="SF008_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HEG8232459.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNSKDGLNESKFVYTHSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRFLETIPSKRPKKLFYISVEAFYIEKEQLREIYQKL
                     EFYEEFKELLEQFLKFYPKAKEGIYRFYFEDCFLDLVFEDIAVLKELDFKADVWYLDG
                     FSPNKNLQMFDENLIFEVARLSKKNTQICTFSSASFLQKNLKKYGFRVEKTKGFRKRE
                     MIKAYLENELEFKDKEAYFSRTFSSLKNKKVAIIGAGISSAVLAYELSLRGFEIDIFE
                     KHLELGKGASGNESGILSSLILKPKVNLGEFSELSFIEASRFYRQILDLEFKGVVEFA
                     HNDLMQERFDTQRENVLFKISKNQAFLEEGGVIFPKKLVKNLFEKSKACIYFNHEFQA
                     YKFENGCFSLKFKNDVVKSDYAVLIYAMGADAKDFVFYDEMKLSKVRGQVTHLKPFLD
                     TPFPLSSKAYICPVKDDLQVIGASYDRLNASLESKEEDDKQNIENIADFMDKNTKLEI
                     IGSKVGFRSYSSDRFMIVGNAYDEAFYKEKYKALLWTKNKEQKPAKMSCNLYFNFAHG
                     SRGFSTSVLAARYLCALINNEPLCLEKKYIHAIHPARFLIRKLKKGL"
     gene            complement(46961..48940)
                     /locus_tag="SF008_000146"
     CDS             complement(46961..48940)
                     /locus_tag="SF008_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEG8232460.1"
                     /translation="MAKIFVFLVFAFTTLFGAYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVIHEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISEASINALRKA
                     VIKDIKVQNISQDTEKSTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKSSIVSK
                     AKSDDKIYVLKSSKTNQGVEFELNADLDKDQLKSFALDEKGNYRFISDFDGVLEGSKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKIIFSKETTSQKKTGQVSKI
                     SEKKQDQKTEIKTKVLETKKQDKKTNNEKENQEPLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNVITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNNNLTLGFYIQTTNQNANKKATQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(48940..50031)
                     /locus_tag="SF008_000147"
     CDS             complement(48940..50031)
                     /locus_tag="SF008_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEG8232461.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRMGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLDKLISVKELMEKLVNGE"
     gene            complement(50028..51233)
                     /locus_tag="SF008_000148"
     CDS             complement(50028..51233)
                     /locus_tag="SF008_000148"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEG8232462.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIENLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYETQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQGNLHPKKAKENLALEITERFHSKEEANNAKSEFDKIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMYLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(51245..53440)
                     /locus_tag="SF008_000149"
     CDS             complement(51245..53440)
                     /locus_tag="SF008_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEG8232463.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKALLFEICGHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPILVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSINN
                     LESAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLARRIRQVATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITMEIPDNINPDSVKDRLKSRCKILDFTSLNDAYKEG"
     gene            complement(53424..53648)
                     /locus_tag="SF008_000150"
     CDS             complement(53424..53648)
                     /locus_tag="SF008_000150"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEG8232464.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKFADIALYEIAENKITLEGLVETNR"
     gene            complement(53659..54378)
                     /locus_tag="SF008_000151"
     CDS             complement(53659..54378)
                     /locus_tag="SF008_000151"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEG8232465.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSIVKNN"
     gene            complement(54430..55623)
                     /locus_tag="SF008_000152"
     CDS             complement(54430..55623)
                     /locus_tag="SF008_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEG8232466.1"
                     /translation="MRKNILIFFCFFLFVGISLANAINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLASQNEDLLKSKSN
                     MESKLISLMAKDFAYDLPIPQGYIESEESFVAFEILGSLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQIKKINDSLKDYNAQLVKLQSLKQKQISEINKQKTDRTIYAKKLDDLQAQ
                     QEELRKTLNQLKIINNKEGANLNKNDTKIVKNNQQIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(55620..56426)
                     /locus_tag="SF008_000153"
     CDS             complement(55620..56426)
                     /locus_tag="SF008_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEG8232467.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILVTNATLKHYEELVNKDYNI
                     IVVSKTELDQNVVKTKVPFFAGLESLDPKDLIDRLKNDVSEKNLKVLKDSLPKFYTLK
                     LNSLPDQNELNLIKNQLLNIVGVSKVETFSKTHDKIYSLLILMKFVFWLFLFIIILLA
                     FVLFLKQMRIWLYEHTDRIEIMCLFGAPFWFRSFMLYKVVVVDCFIAFVILLAFFTQI
                     FDLSIIQESLKAVDIIFPPINFILHLTLIFLATLFICLLCVNTVMFKVKR"
     gene            complement(56413..57078)
                     /locus_tag="SF008_000154"
     CDS             complement(56413..57078)
                     /locus_tag="SF008_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8232468.1"
                     /translation="MPNLIQANKLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKST
                     LLKSFYGDLEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVM
                     LPLMIKGYSKKVCHDQATKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMN
                     EIF"
     gene            complement(57148..58326)
                     /gene="trmB"
                     /locus_tag="SF008_000155"
     CDS             complement(57148..58326)
                     /gene="trmB"
                     /locus_tag="SF008_000155"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEG8232469.1"
                     /translation="MPNFKSKKIKEINLPYSKDDVEFLWLTKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEGFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSRLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKAQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLTQNGRFELRTDSFEYFNFTLEQFLTFPAPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECKNYELNEFNLSSVEFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFAFKEPFKIQENIKAINELKEILKAQFKI
                     "
     gene            complement(58326..59561)
                     /locus_tag="SF008_000156"
     CDS             complement(58326..59561)
                     /locus_tag="SF008_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HEG8232470.1"
                     /translation="MMKRFRLSFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKV
                     ESLKNLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDSKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     EPSQVVSSTSKALPPQVEHLSASTDGSNKIILTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDARAVEYEIRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDSAGLRSEPSSKVKAAQ"
     gene            complement(59506..60474)
                     /locus_tag="SF008_000157"
     CDS             complement(59506..60474)
                     /locus_tag="SF008_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG8232471.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIISIASLKFCDEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGAILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINVVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRHILGDGLYGYNGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFEQINLGENDEKISLEFLLEFFNSFA"
     gene            60552..61652
                     /locus_tag="SF008_000158"
     CDS             60552..61652
                     /locus_tag="SF008_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEG8232472.1"
                     /translation="MFRLDRRILTHFDYMQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGVHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
     gene            61706..61782
                     /locus_tag="SF008_000159"
     tRNA            61706..61782
                     /locus_tag="SF008_000159"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:61740..61742,aa:Ile,seq:cat)
BASE COUNT        21617 a        10445 c         8755 g        21109 t
ORIGIN      
        1 aaatttttcc ttaaggagtt aaaatgcttc caaaatggga taacagctat agtgtgcaca
       61 atgctaaaat tgatgagcag cataaaaagc tttttaaact tgctacaaaa gttgaagttg
      121 tatcagatag atctgtaagt aaaaatgaag tcaaagaact tttggctgaa ttttttaatt
      181 atatgaaaga tcactttaat gatgaagaaa aatacatgca gctaataggc tatccaaatt
      241 tagaagaaca tcgaaaaata cataaagaaa tcatccaaac catgattaat ttaatcaaaa
      301 atatcaaatc aaccaatgat cttaaagaaa aactttatat agtggctaaa aagtggcttt
      361 tagaacacat actatatgaa gacatgaaag ttgaaaaatg gagaagttct tctttgtcta
      421 cagatgatgg tggcgatgtt agctttgaag cagcagaaga tgaagataat gagtatccac
      481 aattttatct ttatacctgt aattgtcctg gtaaaattca cgatgttcct tatagcattc
      541 atcaaaaaat agaattacaa ggtcataaat ttacttgtaa aacttgtaaa caagctataa
      601 aattttacaa aaaatattct taaggaggat aaaatgaaac gcaatgtaaa aacttattct
      661 tttagaatgc ctttagagct taaggagcgt ttggataatt taagtaaaaa tctttctaaa
      721 ccaaaatcaa ccatagtaaa agaagctata gaggcttatc ttaatgaagt tgaagatttt
      781 tcttttgctg ttaatgccct agaagaactt aaagatgggg attatcaaaa ggcgagtaaa
      841 aaaatagata aaattgtcaa aaatcttaaa caaacaaaat aaaaacttta tcacaatttt
      901 ttgtgataaa gacttattat ttttttatat taaaatacat ttatgaatat taaaaatgga
      961 gttaaaaaag tggctccgga tgtaggattc gaacctacga ccaatcggtt aacagccgac
     1021 tactctaccg ctgagctaat ccggaatatt taaaagtaaa atgtgattat agtgaaatta
     1081 aaaaactttg tcaaggattt tttcacaaaa atgcattttt tatgtaaaaa aattaattta
     1141 ctccttaaca ataacacttt ttaaatttct aaaataaaac aaatttaccc catcttcata
     1201 taaataatca agcttcattc catgtgtttc taaaatagta tttacaatat aaagccctaa
     1261 tccaaaactt gatttttgtt ttgatccttg agtaaaagct tgagtatagt attctaaagt
     1321 attgttaagc tcaggaccac gatttttaaa acaaatataa tcatctataa tatcaatttg
     1381 cacaaaccca tcttcagaat gtttaatacc attatctatc atatttttaa tcgccgtagt
     1441 aaaaagttta aaatccacat ttacaaaaaa actttcttcc ataaaaatac gtatattgct
     1501 atcatctcgc attgcaattt ctttggcttc atctaaaaca tctaaaatat tgtatttttt
     1561 tctatttata aaagcagccc ctgaagtaat ttgctcaata gcagcaaatt cattaattaa
     1621 aatttcaagt ctagtaaaaa ccccatttaa gcgctcttta tatttattat cttctatcat
     1681 ttctaaagtt aagagccctt tagtaatagg agttttgagt tcatgcataa tatttcttaa
     1741 aaaaaactga cgagattggt ttaactttcg aatttgaaca atggcttgat aaaaagcttc
     1801 acttacttgt gaaatttcat ccaccccagt gcttacatct tctatatcac caagctttcc
     1861 ttgggcaaat ttatcaattt gttttttaag tcttttaagt ggttttaatt ttttaaatat
     1921 ataaatataa agcaatacaa gaatacaaat cacagctaca gctatagctt tgataataaa
     1981 atacctatag gtttgataat cttgatcctt ataaagataa acctttccat cataaataat
     2041 atttaaatac acctgtctat tataagaaat aatctcgatt aagccattgt taacctcaac
     2101 cctagctaaa acatcacctc taaaaagaat tttacggatc tgctttgctt ctgttatctc
     2161 atccatttta ttataatttt ttgtctgctc ttcaaattct ttttcactga taactcctgc
     2221 aaaatttaag agccttgcat tagctatcaa agaatatttt gtgtttaatt ctctagtata
     2281 attttgctga tcatattcta taagccacaa aaagccaagt ataacactaa ccccagcaaa
     2341 aataaaaata aaagttatag tataaaaaat cgaagattta ttcattgagt aagcttataa
     2401 cctattccac gtatagagtg aatatatttt ggagtttttg gatcatctcc catcttttga
     2461 cgaattctac tgataataac atctatactt ttattactag aatcctcact aatagaagaa
     2521 caattataaa caagctcttc acgacttacc actccaccct cttttttaat caaatagctt
     2581 aaaatatcaa attcagcatt agttaaagta agctcttgtc ctttcatggt aataatatgc
     2641 ttatattgat cataaacaag atcttttaca ctttttgcta tggcgctttt tgtatttgaa
     2701 atacgtctta aatgactttt aatgcgtgct tgtaattctt ttggattata aggttttggt
     2761 aggtaatcat ctgctccaag ctctaaagca ttaaccttat ctgtaatatc atgtcttgcg
     2821 cttgaaacaa taataggcgt atcatacttt ttacgaatct cttcacacac ttcaagccca
     2881 tcaagccctg gcaaagaaag gtctaaaatg ataagctgat attcttttaa tgcgagctta
     2941 gaaagaccta tataaggttc atgagctata tcaactttca tatcaaattt ttccaaatat
     3001 tcagctgtaa tttctgctaa ttctaaatca tcttctatca taagaatatt tgtcatagtt
     3061 ttcctttatt ttaaacttaa ttttaatttt aaactaaaat ttataacgaa aggaaaatcc
     3121 ttccgttatt tttatttaag cacaagcaaa gtcgcaaaac cattgcgata tacccaaact
     3181 ttggtaaatt cttttttatt aacttgtttt aaagcttgtt ctaaatcttt taaattttta
     3241 atttcacttt gtccaacacc tatgataata tcaccctctt ggaaaccaga attttttcct
     3301 ttgctctttt ctttaacact atcaaccaaa acaccattaa catcttttgg aatttgcaaa
     3361 cgatccttaa gtcttggatc taaatttctc aaactcaaac catcaatcaa atcgctttgt
     3421 acgcctttag gattttcttt ttcaccttta agaataaaac ttgcttgctt attttctcca
     3481 tctctttcgt aacttaatga aattttttga ccaatctcta aagttcctat ataattttta
     3541 agatcaatag gactttttat aaccttatca ttaactttag taactaaatc tccacgctta
     3601 agccttgctt catcagcact tgaacctttt tgaacatcag tgattaaagc tccttcttga
     3661 tttttgtaag cttttttagt atcaccttgc aaagctaaaa tagtcacacc taaaaatcct
     3721 ctatcaatct tgcctttttc aataagtttt ttagctatat ctttaaccat atttgaaggt
     3781 atggcaaaac ctatgccgtt atttccacca ccacgagaaa gaatagctga attaatacct
     3841 actaaatatc cgcgactatc caccaaagct ccacctgaat ttcctggatt gatagaagca
     3901 tctgtttgta taaaattttc atattgattt aaacctatat tgtctttatt taaagcagat
     3961 attatcccgc ttgtaacact aaaaccaact ccaaaaggat ttccaagtgc aaaaacaaca
     4021 tctccttcca ttaaatcatc agaatttgta aaagtaatag ctgaaagatt attagcctct
     4081 atttttataa cagccaaatc tgtttttgga tctttaccta taagttttgc tttatattct
     4141 atgtcgcttc ctggtaaatt cactgtaatc gtatcagcat catctacaac gtgattattt
     4201 gttactatat aaccatcttt tgaaataatc acccctgatc ccaaagaact caccacttct
     4261 ttatcatttt ttccttttct ttgaggaaaa tcaaaatcaa aaaattgttt aaaataagga
     4321 tcattaaaaa aatcatccaa agggcttgga cgatttgctc ttgtaatagt ttttgaggtg
     4381 gaaatattaa ccactgattt ttttgcatct ttaatagaat catgataaga aagcactgca
     4441 tttccagcag caggattcac acgattagcc gttgcagtcg attcgttaaa attaatactt
     4501 gcagcaaata aagcacttgc taaacttaat gataaaaaaa tctttttcat ttcatttcct
     4561 tttgttctta aagataaatt atctcgtaaa atattttact gtcttcatag tataaaaccg
     4621 aaaatttaca aaattgtaaa taaaaccttg agtgataaaa atttataaaa cttgattgac
     4681 ttaggctaaa gtttatgtta taatttaatc ctctatataa tcaagtgaaa atttttaagg
     4741 aaatataaca tgaatagttt atacgaaact cttggagtta gcaaaaacgc tagcgcagat
     4801 gaaataaaaa aagcttaccg tcgcctagct agaaaatatc atcctgatat caacaaagaa
     4861 aaaggtgctg aagaaaaatt taaagaaatt aatgctgctt atgaaatttt aagtgacgaa
     4921 aaaaaacgag ctcagtatga ccaatacggc gattctatgt ttggtggaca aagttttcat
     4981 gatttttcaa gaaatactgg tggggtaaat ttggacgata ttttaaaaga tctctttgga
     5041 ggaggttttg gtggacgctc aagagggggt tttaacggct tttcttcaaa aggctttagc
     5101 agtggttttg gaggatttgg aggttttgaa gaagaaattt tagacagcaa tctagagctt
     5161 cacattcctt tcgaaaaagc tgttaaaggc ggggaacata gttttaattt tcaaggcgaa
     5221 accattaaat ttaaaattcc acatggtata aaagaaggcg agaaactaag aattcgctct
     5281 aaaggaaaac aaagcagaaa tggagctaga ggagatttaa tcattattgt aaaaatagaa
     5341 gaaagtccta tttacacaag agaagatgat gatttatatc aaaaggttga tatttcttta
     5401 aaaactgcac tttttggtgg aaaaataaat ataaaaacac tcaaagaagg caaggaagaa
     5461 gcaacaatta acataacgcc taattcaaaa aataaccaaa aaattcgttt aaaaggctat
     5521 ggtgtgcaaa atagaaaaag tgatatttat ggggatatgt atttgatttt aaatgttgtt
     5581 ttgccaaatt tagataccct tgatgaaaaa tttatagaac tcttaaaaga aaaattacct
     5641 taaagaaagg aataaaatat ggaacagcat tatgatgaac ctgtatattt aatcagtgtt
     5701 gtggctaaag ttttaagcat acatccacaa accttaaggc aatacgaaag agaaggattg
     5761 atagagccaa gtagaaccga tggcaaaata agactttatt ctcaaagaga tattgaccgt
     5821 attaaactta tattgcgttt aacaagagac atgggaatca atcttgctgg agtagatgtt
     5881 atcttaaaat tgaaaaacca acttcacgaa tttgaaaatt taattgatga actacgctta
     5941 gaattaagca aacaacaaga taaagaagcg gctagtaaag ccgttgttaa gcataaaaat
     6001 aactttgatt tgatttttta tgagaaaaaa taaaaataat ggataatttt ttagaaattt
     6061 ttttaatcac cgttgctata gctatagttt taaatgtcat atttaaaaaa tttgaaattc
     6121 caactatcat tggatatata gctgctggag aaatcatttc tgaaatttat catttaagtg
     6181 gcaaaggcga aatcactcat atagccgaat ttggtatagt gtttttaatg tttaccatag
     6241 ggcttgaatt ttcttttaag catttaatgg caatgaaaca agaagttttt ttaaacggct
     6301 ctttacagat gcttacttgt ggctttgttt ttatgctact tgctatagga attttaggac
     6361 ttggagataa aagcgctacc atagtaggct ttgcactagc gctttcttca accgcagtgg
     6421 tgcttaaaat tttaaatgat aatggcgata taaatgagca atatggcaga aaagcattgg
     6481 gaattttgct ttttcaagat atagccgtta ttcctttgct tttgcttgta gatatttttt
     6541 catccaacaa tcaaaacata gaaaaactcc tttttaccag tttaatttca gcacttattt
     6601 taatcacttt attatttttc ataggtaaat atctagtgga tagaattttt agactcatta
     6661 tccacacttc ttctcaggaa atttttatta gtactgtttt atttatggtt attggagcaa
     6721 gttttttagc aaattatttt ggattttctt attctttggg tgcttttata gcaggtgctt
     6781 tgatagcaga aacaaaatat aaacacaaaa tagaagcgga cttaatccca tttagagatt
     6841 tgcttttagg gctttttttc ataactgtag gcatgcaaat tcaacttgat gtagtggcac
     6901 aaaattggtt tttaatcata gttttaaccc ttcttgtaat ggctttaaaa tttggcatag
     6961 tttttggctt tttatttctt tacaccaaaa aaagagtagc gcttaaaaca gcttttgcca
     7021 tagctcaaat tggcgaattc gccctagcaa ttttttctct tttacaagca aaaaatatgc
     7081 ttgatatcaa aacttcacaa attttaattg ttgtttctat tttaaccatg attatcacgc
     7141 cttttatttt aaacaatata agaaaaatta ccaatgttgt agaagatata gcacttaata
     7201 ccaacgctgt gcaaaatatt gacagcaata tcaagctgaa aaatcatctt gttgtttttg
     7261 gctatggacg cttaggacaa gaagtcgtac aaaaaatcaa aaacacaggc gtaccttatc
     7321 ttgttttaga aagtgattta aatttagtag aacttggagt tagtcgaggt gaaaatgtcg
     7381 tttttgccaa tgctgctcaa gaagaaacct taaaaattgc caatatagaa gaatgtgccg
     7441 tagctattat cacagttaca aatgaagcta aacttgaaat tttatgtcaa gtgctagcta
     7501 attatccaaa acctatagac accatcattc atgtaaatgg aactttaaaa aagatgcttt
     7561 tttctagcat agatgaaaat atacgcatca ttcgctctga aaaagtaatc gctagaaatt
     7621 tagttcaaga agcgctagaa tgccgcattc acaaaaatac ctaaggaaga attttgacaa
     7681 aaaatgaaga aaaagcctta cgcgtaaaat acctaagaaa tcttgaaaaa tttttcaatg
     7741 gcgctatatc tgcacttaaa aaagaagatt ttgataaaac taaatttgaa gaaagaatgt
     7801 taaaaaatgc taaatttttt gaaaaaaatc ccgcggtaaa tcttaactca acctatgcaa
     7861 aaaatcttga attttttgtc aatgcttgtt tagatttttc caaagaaaaa aacgagcttt
     7921 taaatcttgc caatgcttta gataagcaaa aaaaacaagg tgagaaaaaa gaaaaacata
     7981 aaaattattt aaaggattat gaatgattaa tgtatttttt gatatggatg gaactttaat
     8041 cgatagtgca aatgccattt cttgtgcagt caatgaaata agacaggatt taaacctagc
     8101 cccactttca agagaaatca ttatgcaaac catcaatact cccaatattg actgggcaaa
     8161 agaactttac aatatagaaa atttccatca ttctagtttt aaagaaggct atgaaaaata
     8221 ttttgtcaag cactatgaac aaagcgtggt gctttttgaa ggagtaaaag aacttttaga
     8281 atttttaaaa agcaaaaatt gttttttagc tattgctact aacgccccgc aaagctcact
     8341 ttcaaacata cttaaaaaac acgatatcat tccttatttt gataaaattt taggcgtaag
     8401 tttaggcata gaacccaaac ctcatcctat gatgctagag cttttaaaaa gcgaggctcc
     8461 atataaaaca agcgttttta taggagatag tcaaaaagat aaagaatgtg ctaaaaatgc
     8521 taatttgcct tattttcatg ccaaatggta tcaaaaaaat ttaaaagaaa atgaatttag
     8581 caacgctagt gaacttaaag gctttttgca aaagtattta taagtttttt aatgaaattt
     8641 tagttaaaat tagaaataaa ttttaaaaag agtaaattat gagtgaatta ttaatagaaa
     8701 ttggtacaga agaattacct gctattcctt tgctaaaaga attagctaat atagaaaaaa
     8761 aatggagcaa tgttttagaa gaataccgct tggtaagtga ttttaaattt tattatactc
     8821 cgcgtcgttt agtttttttt catgaaaatt ttgcagacaa acaagaagat agctttgctg
     8881 aatttatagg agcacctaaa aatgttgctt ataaagatgg agttttaact cctgcgggac
     8941 aaagcttcct gcaaaaagca aggatcagtg aaaatgaact ctcttttaaa gaaatcaaag
     9001 gcaaggaagt tttgtaccat caaaaagcta ttaaaggttt gcaaagtcaa gaaattttag
     9061 gagaaatggt agaaaaattt ctaaaaagtc ttagttttgg caaaagtatg cgctggggtg
     9121 caaattcttt tgaattcatc cgtgcgatcc gttctatagc ttgcatttta aatgatgaac
     9181 ttgttaattt tcaaagctat ggagtaaaaa gtactaaaaa aactttcatt cacagaagcg
     9241 taagttatga tttgcaagat tttaacaatg caaaagaata ttttgaacta ctagaaaaaa
     9301 actatatcat ccttgatcca atcaaaagaa aggaaaaaat acttgagcaa tttaaactca
     9361 tagaaagtca aaaaaatata caaattggag aagatgaaga gcttttagct gaagtagttg
     9421 ctatcacaga atatcctaat gcacttttag gaagttttga agaagaattt ttagaaattc
     9481 ctagcgaagt aatcatcact tcaatgagag aaaatcaacg ttattttgca gtttttaacg
     9541 ataaaggctt aagtaatcat tttatagtag taagtaatgc agtatgtaag gattattcaa
     9601 aaatcataca tggaaatgaa agagttttgc gtgcaagact tagcgatgca atgttttttt
     9661 atcaaaatga tttacaaaat ggcttaaaac ctgaaaaact tgccaaaatg acctatcttg
     9721 aaggtttagg cacaatgcaa gataaaagtt taagagagat taaaattgct gaaattttat
     9781 gtcaaatgct ccataatgat aaaatcgaaa atatcagcac agcactaaaa tacgccaaag
     9841 cagacttagc cacacaaatg gtttatgaat ttactgattt gcaaggcatt atgggaagtt
     9901 attatgcgca aaaaatgggc ttagattatc aaatttgctt agccatcaaa gaacaatatc
     9961 ttcctaattc cgaacaagct ccacttccaa gtacagaatt ttcaagcata gtagcccttg
    10021 caaacaagct tgataccctt ataggacttt ttagcatagg aaaaattcca agcggaacaa
    10081 aggatcctta tgccttaaga agagctgcca atgggatcat taaaattgct ttaaatttaa
    10141 ataaagaatt tgatatccaa attttattag aaaaactttc aaatcattat aaaagctttg
    10201 atatgcaaat tttaaaagat tttatttttg aaagacttta tactttttat acagtcaatg
    10261 cttcttttgt aaaagcggtt ttaagctcac acaatacaga tcttatccat atcaatcaaa
    10321 gcgtaaatgc tcttataaaa cttagcaaaa aagataattt taatgaaaat tttgcaacct
    10381 ttaaaagact agccaatatc gccactaaaa atcctcataa agttgatgaa agtctttttg
    10441 ttcaagaagc agaaagtaaa ctttacaaag cttttcaaga aaaaactaaa gccaactctt
    10501 tacaagaaaa acttgaaaat ctttttgcac ttaagccttt tattgatgag ttttttaatc
    10561 aagtgatgat taatgctgaa gatgaaaaac ttaaaaataa tcgccaagct ttggtttatg
    10621 aaatttatgc ggagttttta aaaatcgccg atcttaaaga gttaagccta tgaaagcctt
    10681 atggcttttt ttaagcctta ctctttggct ttttggagct caaaatttag aactcatcaa
    10741 aggtcaagct ttatttttgg agctagataa gaaagatttt ttatctttaa aaaataatgg
    10801 taaaaatatt cccactttta cacatcctaa aaatcaagaa aaagttctag ctattttttc
    10861 cttaccttac aaaaatcccc cgcaaaatac aaaacttatc gcattttata aagataaaaa
    10921 agaagaaatt ttcataaaaa ctttagaagg taattataaa agtgaaaaat tgcaagttga
    10981 aaacaaaaag atttttccac caaaaaccat acaagaacgc atcactaaag aattaaaaga
    11041 agccaatgcg atttatagtt cttatactcc aaaagcttta tttaacggtg cttttaatat
    11101 acctttaaat tcttttatca caagtgattt tggcaaagca agaactttta atgaaaaagt
    11161 agcaagttat catagcggaa cggactttag agctgccaca ggaacaccta tttatgcagc
    11221 caactcaggc atagtaaaaa ttgcaaaaga tcgttatttc gcaggaaatt cagtagtcat
    11281 tgatcatggt tttggaattt attcacaata ttatcatctt tctaaaatcg atgttaaaat
    11341 aggacaaaag ataaaaaaag gtgaatttat aggacttagc ggggctacag gtagggtaag
    11401 tgggccgcat ttgcattttg gaattttagc tggaggcaaa caagttgatc ctttggattt
    11461 tgtatccaaa tttaatgcta tttttcaatg aaatttagtg actttttcca tgcttggctc
    11521 catgaaagct attataaaaa tgctgtaagt ataggaaaaa acggagattt ttttactgct
    11581 gtaagcgtag gaaatctttt tggcacactt ttagccaagc attttttaaa tttaatagat
    11641 aaaaaaattt tacaactccc tttagaactt gtagaaatag gcgctaatga aggatattta
    11701 agtcgtgatt ttttagccgc tttgcttgaa ttaagacctg aaattttttc tcaaatttct
    11761 tttttcgtca tagaaccgca tgaaaaatta agaactttac aaaaaaagac tttagaagga
    11821 gtggaattta ctcacaaaaa tagtcttaaa gaatgccatt ttaagaacgc ttttttcttt
    11881 tgcaatgaac tttttgatag ttttgcttgc gaacttatag atcatgataa aatggcattt
    11941 gtagaaaatt ttaaacttat ttttaaaaat atggatgaaa atttaatcac aaaatgcaaa
    12001 gctttaaatc ttaaaaaagg tgaactcagt ttagagcttg aaaatttttt taaagattta
    12061 aaccaaactt gtgagagatt tatatttgcg ggatttgact atggaacttt aaatccacaa
    12121 agttttagct taagaatcta tcaaaagcac gaagttttta gcccttttaa agtatcttta
    12181 aaaaattttt tctgcaaaag cgatctaact tataatgtca attttactca tcttcaaaaa
    12241 ctcatcaaag aatatgattt taaaccttta gcttttaaaa aacaaagtct tgctttaatg
    12301 gattttggtt ttgaagattt attagaatac acaaaaaata aaaacattaa aacttacgaa
    12361 agttttttat ctcaagctaa aattttattt tttaattttg atgaaaaatt tcattttttc
    12421 gaatttcaaa aaaactaaaa ttttatattt ttcatactcg ctaaacaaac cccctccctt
    12481 aaaccctcat caatgactag aagtttatgt ttatcaaaca aagcataaaa cagcaaacaa
    12541 cctgcactca aataattttt tctcatcgcg cctacttctt ttatagcctt tttttcttcc
    12601 atatgaaaaa gtttaatagc ataatttaaa aaatccttat ggtaaagttt tttaccattt
    12661 actttagttg cttcatactt ttcatagctt atattttgtt ttaatgcgct aagtgtggta
    12721 ggaactccgg aatttaaaac caccgtttta gcccctaaag aacgaagttc ctttttaatc
    12781 atagccacct catcaaaagc cctaaaagct agatgcttta aatagggatt tgcaattaaa
    12841 aaatgaattt taagtttttt atctttaata tttatgataa atttaggata tttttttatt
    12901 aattttttat aagaaataca agatttataa taagaatggt aatttttttc ataaaaacta
    12961 ataataccaa aatcaaaact tttaaaactt tttccaaaag aaagctcaca agaagcccct
    13021 cctaaatcac aatacgcaaa ctctccccaa attttaagcc ttcttaaacc tgattgcata
    13081 cctaaaacac tgatcttagc ttcacttttg gcatctataa gcttaaaatc aatcccaaat
    13141 tcttttttta aatgggcaaa aatttcattt gtattgcttg cctttctaaa agctgcagtc
    13201 gctacagctc tcgctttgct taaatcttgc tctttagcta aaatactcaa agtatttttt
    13261 aatctttgta tggcttcttt agaaatttct ccactttgat ttagattttt cgctgcccca
    13321 ataacaaatt catattcttt taatttattt aatttttcat ccatttgtac tgctcttaaa
    13381 gtatttgaac caagatctat acctaacatg actttcctta tttgatttta tagtataata
    13441 gcaaaaaagt tctaaaggaa aaatatgctt ttaggtgtaa atatcgatca tattgcagtg
    13501 ttaagacaag ctagaatggt aaatgatcct gatcttttag aagctgcttt tatagtagct
    13561 agacacggag atcaaatcac tttgcatgta agagaagatc gccgtcatgc tcaggatttt
    13621 gacttggaaa atattataaa attttgcaaa agccctatca atttagaatg tgctttaaat
    13681 gatgaaattt taaatttagc tcttaaactc aaacctcacc gcgttacttt agtgcctgaa
    13741 aaaagagaag agcttactac agaagggggg ctttgtttaa atcatgctaa attaagacaa
    13801 agcatagaaa aacttcaaaa tgcaaacatt gaagtttcac tttttattaa tcctagttta
    13861 gaagatatag aaaaatcaaa aattttaaaa gcccaattca tagagcttca tacaggacat
    13921 tatgcgaatt tgcacaacgc actttttagt aatatctctc atactgcttt tggcttaaaa
    13981 gaactcaatc aagataaaaa aaccttgcaa gctcaatttg aaaaagaatt acaaaattta
    14041 gaactctgtg ccaaaaaagg cctagaactt ggcttaaaag tagccgcggg acatggttta
    14101 aattacaaaa atgtaaaacc cgtagtaaaa attaaagaaa tttgcgagct aaatatagga
    14161 caaagcattg tagcaagatc tgtatttaca ggacttcaaa acgctatttt ggaaatgaaa
    14221 gaacttatta aaagatgaaa aaactagcca ttagtatagg cgatataaac ggcataggac
    14281 ttgaaatttt agtgcgttct catgaagaac taagcaaaat ctgcacacct ttttatttta
    14341 tccacgaaag cttgcttgat aaagcttcaa aacttttaaa tttaaaactt tttaatgcaa
    14401 aaatcgtagc ttttaaagat ggaaaagact atgagtttaa ttttgtaaaa aaagaaaatt
    14461 ctcttgaaat ttactctttc taccttcctt taggctttaa agtggatgaa aattttgaaa
    14521 tcaaagccgg agaaatagat acaaaaagtg gactttatgg ttttttaagt tttaaggcgg
    14581 caagttattt tgtctatgaa aaacacgccc atgccttgct tactctacct atacacaaaa
    14641 aagcttggga agatgcagga cttaaataca aaggacacac cgatgcttta agggattttt
    14701 ttaaaaaaaa tgccattatg atgttaggtt gcaaagaact ttttgtaggg ctttttagcg
    14761 aacatatacc tttagctaag gtgagtaaaa aaatcacttt taaaaattta agtatctttt
    14821 taaaagattt ttacaaagaa acacatttta aaaaaatggg gcttttaggt tttaatcctc
    14881 acgctggaga ttatggagtt ataggtggag aagaagaaaa gatcatggaa aaagctatag
    14941 cctttgttaa tgccttttta cactctaaaa aagatgaaaa atttttcaaa aaagccttaa
    15001 aagatgaaaa tttacaaaaa gaattgcttt taaattttaa aggcaggggc gtttatctac
    15061 cctatccttt agtggctgat acagctttta ctaagactgg tttaaaaaac tgcaatcgtt
    15121 tagtggctat gtatcacgat cttgcccttg ctcctttaaa ggccttgtat tttgataaaa
    15181 gcatcaatgt aagtttaaat ttacctatca tacgcgttag cgttgatcat ggcacggcct
    15241 ttgataaggc ctataaaaat gctaaaatca acactaaaag ttattttgaa gcggctaaat
    15301 ttgcaatcaa tttacattct aaagcttaaa tttagcccta gaatcaatca aatcttcttt
    15361 agctaagctg tctataaaat cttgcaaatc tttattggta tttaaacttt gagtgagtaa
    15421 attttcatat ttatcaactt tatttttaaa aatttgctct aaaacttctt tagtctttgt
    15481 atcttttttt gctctttgca taagttctaa taaaacctta atataagctt cttgcatgca
    15541 atcacttgca ttgagtaaag ataaaatagg attttcccct gcttttgtat tttgcatatt
    15601 ttttatacaa atttttcttt ctttaagcat cttttttgaa atggctttaa aatctttttt
    15661 catcttttta tctgcttttt ttgaaatatt ttgatataaa ctactataga tgttatctac
    15721 taaagcaagt tttttattat caaattcatt acgcacacca attttattgc atatcataag
    15781 ttcatcatca cttttgccat catatttgat tttagagcaa tcaaaactag gttttacttc
    15841 atctttataa ataagctcat caaaactcaa agcccctaaa ctcgccaaac ttaaaccaag
    15901 caataaaata atttttttca ttatttacct ttaaaatttt tattttattt taacaaaaat
    15961 attttgaatt ttttaaggaa attaagcctt tattttatta taatgcgttt ttatttttta
    16021 taaggaactt aaaatgcaaa attacaaaaa agctcttttt gcactagctc ttagtgcttt
    16081 ttgtatgggc gtaactgaat ttgttatggc aggagttttg gttgatgttg aagcgtattt
    16141 tagcgtagat gcaaaaaccg cgggctatct tacaacctta tatgctatag gtgttgttat
    16201 aggtgctcct cttatcacca tacctttaag tcgttttcat agacatacac aacttttaat
    16261 caatcttgga atttttgctt tagcaaattt catcatcttt tttagccaaa atttctatct
    16321 tactgctttt gcacgcttta tagcaggaac acaacatggg gtattttttg tcattgccac
    16381 cttagctgta agtgctataa ctccagatga taaaaaatca agtgctctag ctataatggt
    16441 cacagggctt actgtagcct tagttactgg agtgccgctt ggaactttta tagggcatta
    16501 ttttggcttt aaatttatct ttttactcat ttttatcatt acaagtctag cattttttgg
    16561 agtatggcat atgatgccca aaaatttaca tcctagccca accagtctta aaaatctaat
    16621 ccctgctttt tctcatcaaa atttgttaaa aacttatact ataaccattt gtagttgtgg
    16681 ggctcaattt gttctttata cttatttgca aaaaatactt gtagaaataa gcggttttaa
    16741 agtccaagat acagcttata tcttgctttt atatggaatt tgtgcaattt gtgggaattt
    16801 atggggcgga aaaatagtag ataaaaaagg tgctattttt tctttgcgtc ttattttaag
    16861 catacaagtt ctagtatttt taagtgtatt tctcaccatg cattctaaaa ttttaatcat
    16921 ttttagcgta gctttgatag gattttttgc cttttcaacc atacctgcac taaaaatgct
    16981 tagcattact aaagctaaac gccatactta taaagtcata gacagtacag taagtgtgaa
    17041 tgaagcagct tttaatgtag gcatagcttt agcaagtttt ttaggtggga ttgttttagc
    17101 aagattgggt atagaattta atgctttatt ttcagcactt tttgtaagcc ctgctttgat
    17161 ttttgccttg ctttttgcca aagataaatt aaattataaa aaatttcaaa gaaaaagttt
    17221 tacaaaggta taaattggaa tagaaattgc ttgcttattt aatgtaaagt taaataaagg
    17281 aggagaaaat ggtagtagat aatactcaaa aaacatcaaa tgctatcttt agcaccacaa
    17341 ctaaagttaa agaaaaaaat acttcggcag atgaatttca agccacatta aatgaagtaa
    17401 aaaacaaaga agaaaaggaa gataaaaaaa caaactcaag caaatttact aacgaagaca
    17461 ttgatcttgg tgctgttaga gaagatttta gatcttatgc ttggcaaaaa atgagagaag
    17521 atcaatacaa aaaaaatgag gagactttgc taaataagct ttttactaca attgacgcag
    17581 gaaatgccac aaacaataca aaggcttaat atacaaatca atcaaaactc aaactacata
    17641 aacgagaatt ccaataattc tcgtaaaatt tctaataact ctggataaaa tgaaaaaatt
    17701 tattatttcc tctatatgaa gaaaatatag aaaaattgac caatttaatt tatcaaattc
    17761 tgttataatt ttgctaaaaa caaaggaaaa taatgatttt tatcgatgct tgctttaaaa
    17821 aacctacacc ctacacccct atttggatga tgcgtcaagc aggaaggtat ttgccagaat
    17881 atatggaagt aagaaaacaa gcgggtgatt ttctctcttt atgcaaagac tataaaaaag
    17941 cttctgaagt ttctttacag cctattgata ttttagatgt agatgcagca atcatttttt
    18001 cagatatctt agttgttcct cttgaaatgg gtatgaattt acgttttgaa aaaggagaag
    18061 ggcctgtttt tgataatcct atttcaaccc tagaagattt agaaaaactt gacgatcaaa
    18121 atgcacataa aaaattaaat tatgtctatg atgccttaaa gcttacaaga gaaaaattat
    18181 ctcaaaacaa ggctttaata ggattttgcg gaagcccttg gactatagct acctatatga
    18241 tagaaggaag tggaagtaaa aattatgcaa agtgtaaaaa aatgctttat caaaacccag
    18301 aacttttaca taaaattcta aacaaactaa ctcaagtttt aaaactttat ttagaagagc
    18361 aaattaaagc aggtgctaat gctatacaaa tttttgatag ctgggcaagt gctttagaat
    18421 atgataagtt ttttgaattc tcttttaatt atatgcttga aatttcaaat tttattaaaa
    18481 gcaaataccc aaatatacct gtaattttat tccctaaagg cattagcggt tatttggata
    18541 gaatcgatgg taattttgat gtttttggag ttgattggag cactccgctt gatttagcac
    18601 gtgataaact atcgcacaaa tacactcttc aaggcaacat ggaaccttgt agactttatg
    18661 ataaaaatgc catcaaagaa ggagtcggaa aaatactaaa aaccatgcaa aataaagctc
    18721 atattttcaa cttaggacat gggatcttgc ctgatattcc tgttgaaaat gcaaaatatt
    18781 ttatcaagct tgtacaagaa agttcagcta aatgaaaata ctctttggtc ctgttagctc
    18841 aaggcgtttt ggaagatctt tgggtataga tttaagccct agtaaaaaac aatgcaattt
    18901 tgattgtgtt tattgcgagc ttgatccaaa aaaagcccaa gaaaaacagg atgaaattat
    18961 cagcatagat aaaattatct ccgaagttaa agttatgctt gaaaaaaatg ttgaatttga
    19021 ttttcttacc cttactgcca acggagagcc tagtctttat ccttatttaa atgagcttat
    19081 tttatcttta cgcagcattg ctaaagataa aaaattgctt attttaagca atggtacagc
    19141 tgtattagat gaagacaaat ttaatgcttt gctaaaacta gatgtggtca aatttagcct
    19201 ggatagtgca gttgctaaaa ctttttatcg tattgataga gctttaaaaa acattgactt
    19261 agaaaaaatg atagaaaaaa tggcagattt tagagctagg tttaatggag atttgattat
    19321 ggaaattcta gttgttaaag atcttaatga caacgaagaa gaatttgaag cacttaatca
    19381 agctttaaaa aaaatcatgc ctttaagagt tgatctaagc accatagata gacctcctgc
    19441 ttatgctgtt aaaaaagtaa gcgaagaaaa acttttagaa ctttctaaac ttatagattc
    19501 tactcccgta ctcttagcca aaagacatta tgaaggtgaa aaactaagct tcaatgaaga
    19561 agaattatta aaaatgcttc atttgcgctc acaaagcgaa atagacattg aagtgaaatt
    19621 tgatgaacaa tccaaaactc tcttaaatca acttatcaaa gaaaaaaagg taaaaattct
    19681 cgatttagct ggagttaaat tttataaagt ttaggccttt ggcaaatact ttctaagtaa
    19741 agttataaga tcatttctac ttacatcact taaaacttcg ctcacacaat caaaatccct
    19801 aactttttcc tttgaaaaaa agatgatatg gctttgtgga tgctgttttt tataagcact
    19861 tagcaaattt ctcatttgct caagatcaaa tttaattaat tcataatcaa gtaaaatcaa
    19921 acgataagtc tccttgctta attcttgttt taattgacta aaagaattta tacatatatt
    19981 tttatcacat tgtttttcta ttatattaaa aaacaaggtt gcatcaaaat cattttgttt
    20041 aaaaagcaat acattatttt gataaggggt tttaaatttt aaagtgcaaa ccttatcaag
    20101 cttgttttgc aaaatatttt caagatcttt tttttcaaaa ggtaaagtta aaaaatactc
    20161 ataatgtgta tttttatgcc gacccatcac tataaaatca taatttttct ttacattttt
    20221 attgaaaatt ttatccttga taaaaatcaa atgaaagtca ttaacatcaa aacttaaatt
    20281 tttaaaacaa gtgctttcta tgccaaaata cgaaagtaaa tttgcaagta aaaaattctc
    20341 aagctcatca ttattaacta tggccacact tgcttcaaat tgcaaaacct ttccatgaga
    20401 tgttcctata atgcttttat gatgctctaa agcctcattt aattctaatc taatttgatc
    20461 tttttgagaa tttaaggcat ttaaaatcaa agaattaatt tctttattat acccttcatt
    20521 taagcaacgc attgcattag atatatttac aagctgatat aaattttcct ccaataaatg
    20581 caaatatcta tctttttcat gggatatttt agttaaattt tggctcgtag tttcaaattt
    20641 ttcctttaac aaatcaagcg cactatcaac atcaatcttt ttttgaaaat ttaaaaaatc
    20701 attttgcatg caaaaaattt tttgatatat tttgtttata tttctatttt gcctaaaagc
    20761 aaaaataaaa agtgttaaag ataaaacaaa aatgctagaa aacataccta ttttcagttg
    20821 ttcagtaaca ctatcaagct ttgagatatc aatacttaaa tacgctaaaa ttagattaaa
    20881 aataaaaatt atccctgcta atatcaaatc aattttcctt tatcttttgc gccgctttcc
    20941 tgcctacaag cattgtaaga tctttaaaat cagccttata tatagattca aaatttccat
    21001 aatacgctaa aagtttttgt ataacccctg aactaagtcc taaatttgca agcttagaac
    21061 ttttcaagtc ctgttttttc ttagtatttt gatgaaagct gatagcaaaa cggtgtgctt
    21121 catctcttaa tttctgtaag aattgtagtt ttttatcgtt aatgcttaga ctaaattctc
    21181 cttttaagga atgaatttta tccttagcac cccctttagc tctatgtgct tttgcatcga
    21241 ttttttcttt tgaaatagct aaaatatcga catttgcccc actacttaca atgatttctt
    21301 tagccaaatc aagcaaagcc tttcccccat ctataagcca taaatcagga ggaggtattt
    21361 tatcaaagtc caaagcccta cgcgttaaaa cttcacgcat ttgatcatag tcatttttat
    21421 gttttaaatg aaattttcta tattttgact tatcccaaga atttattcta taagttacca
    21481 tagctccaac atttgccacg ccttgcaaat gagaattgtc aaaaatttct atatcatttg
    21541 gtaaattttc aagctcaaaa taaaacttta attctttttg tatagtaaaa tcatgatttt
    21601 tttgctcttt ttctatattt aaaagggcat tttgaaaagc caaatcacaa attcttcttt
    21661 tttctcctat tttagggatt ttaatactga tttttttatc aaacctttgg cttaaaattt
    21721 cttctaaaag cactctatct tcaaattctt cataaacata aataacattt gcaagcaaag
    21781 gaatatccat gctaaaattt tctaaaatca gttgcttata aatttcattt tgatcccatt
    21841 gtatatcatt tcttatagga gtaatcttag aatttgcact gataattttt ccattttgca
    21901 ccacaaaacg caaggttgaa agcacggaat ttttaaaagc taaagcaaat acttcaaaat
    21961 cttctaattt cgcaatatct atttcaacct taacttccaa atctttaatc attgcaatct
    22021 gatctcttac tttagctgct tcttcgtaat tttcattttg tgctaaaaca agcatttgtt
    22081 tttctaagtt tttaagcaaa acactaggat ttaaaagtgc gtgtatagcc tcatctaaaa
    22141 tttcaaggta tttttccctg ctgatgagtt tatcacaagg tgcaagacaa cgagaaattt
    22201 gataaaaaat acaaggggat ttacaacttg ctttttgctt taaaggatag tataaataaa
    22261 gcgcatctaa aagctctcta gcgcctttaa aaaaagggcc aaaatattta attttgcttt
    22321 tttttactaa ttttctagtg atctcaaagc gtggaaattc ttcttcaaaa tccacataaa
    22381 tataaggata agttttatca tctcttagca aaatattata ttttggatgc agttgtttga
    22441 taaaagaatt ttctaaaatc aaagcatcag cctctgaatt agtagcaata aattccaaat
    22501 gcactgtttc ttcaatcatt ttttgaattc ttaaagaatt tcttggattt gcatgtaaat
    22561 ttggagtaaa ggcaaaataa gatttgacac gatttttaag atttttagcc ttgcctacat
    22621 ataaaagctt tccttcttga ttaaaatatt gatacactcc agcactattg ggaagagttt
    22681 ttaactcatt ttctaaattc tctttaatca agattagaac ctttttttat aagctctctt
    22741 aaatcttcaa atttcttaaa taatttttta tcttcaaagc aatttttaaa ttcaccctta
    22801 gaaagctcca aataagaatt tttagagagt ttttcatcat ttttgttttt atttgccgca
    22861 taagtgtatt tttgagaaaa gatttttata tcttttatat caacaaatcc acttaaagga
    22921 tatttctgtc catatgcttt tatgagaaat ttaatataaa ttttgctatc atcatgattt
    22981 aattcttgat aagctgctgg atgtaaggtt attatattta aaatatgatt ttttacataa
    23041 attttagcaa tcaaacgttg cttagcaagc ggaaaagaac ttaaaaaatc tttgcaaaaa
    23101 aataaggttt ttaaaggctt ataatgaggt ttatccatca attcattaat aacagcacta
    23161 gcgtttttag tcatcttaat attatttctt tttcccataa gatgatttta gcatttcttt
    23221 tcttaatttt cttctgtgct tgcggatata aaggcaaccc tcaatacaca agctatgaac
    23281 aaaatggttc ggtaaaaacc attaaaaaat acgaacaatt acataggtgg taaataatga
    23341 aaaaagcaga tattttagtt ttagactttg gctctcaata cactcagctt atagcaagac
    23401 gcttaaggga acaaggagtt tatgcagaaa ttttaccttt taatgtaagc ttggctgata
    23461 ttaaggcgaa agaaccaaaa ggtattattt taagcggagg tccagcaagc gtatatgcaa
    23521 ctgatgcgta tttttgcgat aaaggcatat ttgacttaaa tctacctatt cttggaattt
    23581 gttatggtat gcaactcatg gcacatcatt acaaagctac agtagcacct gcaggacata
    23641 aagaatacgg caaagcaaac atagaagtta aaaaagatag cgctttattt aaaaatcttc
    23701 caaaaaaaca aaccgtttgg atgagtcatt ctgataaagt agaaaattta cctcaaggtt
    23761 ttgaagtttt agccacaagt gaaaatagcc ctttttgtgt ttttggaaat gaggataaaa
    23821 aattctttgc tctacaattt cacccagaag tacaacacag cgaatttggc aaaaatatct
    23881 taaaaaattt tgctaaatac gcttgcaatt gtgaaagtgt ttggaatatg ggttcttttg
    23941 caaaaactca agcagaaaaa atccgcgaag aagtaggcaa tgataaagtg ctttgtgctg
    24001 taagtggcgg agtagatagt agcgtagttg ctgcactttt agctagcgct ataaaagagc
    24061 aagttatagt agtttttgta gataatggac ttttaagaag tgaagaaaaa gaacaagttg
    24121 aatttatgtt taaaaacact ttaggcatcg atctcatcag cattgatgca agtgaaattt
    24181 tcttaagtcg cttagctaat gtcacagatc ctgaacaaaa aagaaaaatc ataggaaata
    24241 cctttataga agtttttgaa gaagaagcaa aaaaacataa agatgtaaaa tatctcgctc
    24301 aaggcacact ttatactgat atcatagaaa gttctgttgt aggtgcaagc aaaaccatta
    24361 aaagccatca taatgtaggg ggcttacctg aaaaaatgaa tcttaaactc atagagcctt
    24421 taaaagaaat ttttaaagat gaagtgcgtg ccttaggact tgagcttgga cttagtaaag
    24481 aagtagttta tcgtcatcct ttccctggac caggtcttgc tatacgtatt atgggagaag
    24541 taaatcgccc tggcttagaa ctattgcgca aggctgatgt aattttactt gaagaactta
    24601 aaagtacagg ttggtatgat aaaacttggc aagcattttg cgtactttta aatgttaaaa
    24661 gcgttggagt tatgggggat aatcgcactt atgataatgc agtttgcata cgcgttgtag
    24721 atgcaagcga tggcatgaca gctactttct cgcatttacc ttacgaagtt ttagaaaaca
    24781 taagtcgccg tatcatcaat gaagtagaag gtataaaccg cgttgtttat gatatctcaa
    24841 gcaaaccacc tgcaaccata gaatgggaat gatccatttt ttctagcact tatttttatt
    24901 ataaaatttt tataaaaata aggctagaat ttattcaaga aatttcaagg aagaaatatg
    24961 catggaaaaa tagctattta tatggattct acaggacgtg gaaccgttac aaactcagca
    25021 aatacctttt ttgacttcaa tcgccaaatt tggaatgata aaaaaagtat gccaagtgtt
    25081 ggtatgcttg tggaatttag aactctttct agcgaaaaaa aagcagaaga cggcaagccc
    25141 gttcaaacaa gcaaaaccat aacaggtata aaaccttcaa aatttcaaga atttaaagaa
    25201 ggggatttta tcactgagca tgatttttgg aaaactgaca atgatgatga attagaagac
    25261 ttgcaaaact caagaagaag tgcttatata acagaacttt atagaacaac agactttgac
    25321 actatagaaa aaattcctct ttcttttact atacctcaag ctatacaaaa atattttgcc
    25381 catgaaattt tatccgtaga aacgcttcaa gccaatctac aagatgaaaa ggaaattcct
    25441 tgtatacttg attatcttat acttaaaaga tttttattta aagcttatga tactttaatt
    25501 tttatggata atagcataga ccaaacccaa tttagcgcat taaaaagcat catgatgcat
    25561 ttagagaatt cgtataagca aatgatggct gatcaaaaac caaatatcac taaaattttt
    25621 aacgaaactt ttttatcttt gcagtgtcat taccaagctt tagtagccac catagataca
    25681 agaaaaaatc gtctagcctc acttgaagca caaatgaaaa ctttacaatc tgaaataaat
    25741 cttaaaagca atgcgaccga tgcagaccct gaaaaactta aagcacgaca agaaatattg
    25801 gctaaactac aaaaagaagc agaatactac agaacaacac taaaaagact tgatgctata
    25861 agggaagatt tttataagaa aaattacaat attttcgaaa atgcttttaa actttcacga
    25921 gaaaagctct ttaaaaaaat tgtcacaggt ttaaatctat gcgcaaccat aatggatgtt
    25981 aaaatttggc acttgtcttt aaaatcatca ggggttaaaa attcttattt tactatgagt
    26041 aatatagaaa attctttctg ttctctttct tttgcagaac attacttaag tcgcttaaat
    26101 aaatccgctc taaatccttt tgatcaaaaa cttttagtgt atattcaaaa aatcacaaaa
    26161 gaacaaagaa aaaaattttt agttgtcaca tcggatttag atttattatg caaattaaaa
    26221 attgaaaact tttcacaaaa tccgtattat ttagtaaaat acgcacctaa aaaagtgaat
    26281 tatcagtctt taatgcgtga taacaccttt gatatagtct atattgatga aaaacatgtt
    26341 tgggaaaatg ttgccgatat tattttacaa ggaaagcatt ttgacaaatc aggaaaaacc
    26401 aaatttaaac tgatttaaga catagaaatt taagctaaat taagttataa tttccttgcc
    26461 taaacagttt gtggtattta aagtgatcca acacattttt attaactgcg attgtgtgat
    26521 ttaccgtgtt ctgtggcatc gtttgagctt tgaaaaaagt gagaagttgc agcctttaaa
    26581 aattacctag cggttttctt tgactttttg gggtcaatct ttgttaaacg gctgtttggg
    26641 tttaaaagga gatataaatg aaaataatga ttttgggtag tggtgcaaga gaatattcta
    26701 ttgctttagc cttaagaaga gtagacaaaa atttagagtt ttattttgct cctggaaatg
    26761 gcgctaccga aagtcttgga acaaatttaa acctaaaaga tccagtagtt ttagcaacct
    26821 atgcaaaaga aaaaggtttt gatctttgta tagtaggaag tgaaagtttt ttagctgaag
    26881 gggttgtaga tatttttaaa caacaaggac ttgctatttt tgggccaagt aaagctgctg
    26941 caatgcttga aacctcaaaa tcttttatga aaagctttct taaaaaatac cgtatcaaaa
    27001 cagccaaatt tttaaacaca aatgacattg aaaaagcaaa aaattttata tatagtttaa
    27061 cccctcctat agtagtaaaa gccgatggac tttgcgcagg aaaaggtgtt atcatagcta
    27121 aaactcatga agaagccata gaagaaacag ctaaaatgct gagcggagaa agctttggag
    27181 atgctggaaa actcgttgta attgaagaat ttttagatgg ttatgaatta agcatttttg
    27241 cagtatgtga tggcaatgat tttgttttac ttcctgcagc acaagatcac aaaaaattac
    27301 tcgataatga tcaagggcca aatactggtg gaatgggtgc ttacgctcct agctctttgg
    27361 cgaatgaaag cttgcttaga aaagttcaaa aagatattat tttaccaact ttagcaggta
    27421 tgaaaaaaga aggagcggaa ttttgtggtg ttttatttat aggtgctatg atcgttggaa
    27481 ataaacctta cgtattagaa tttaacgttc gctttggcga tcctgaatgt gaagttttaa
    27541 tgcctttaat cgaagatcct ttagagctta ttttagctgc tactcaaaga cgcttaagac
    27601 actcaaaaat caaaatcaaa aaagaatttg cagtaggggt tgtatgcgca agtgaaaatt
    27661 atccttacaa aagttcacca aaaagtgaaa ttaccgtaaa taacattcct gaaaactctc
    27721 atatttctta tgctggagta agcctagaag atggcaaatt aatggctgat ggtggaagag
    27781 ttttagtttg cgttggcaca ggaaaaagta tagaagaagc gcaaaaaaat gcttataaac
    27841 tttgtgataa tgtaaatttc aaaggaaaac aatacagaaa agacatcgct catcaggttc
    27901 tgaaatgaaa gaaaatttac aagaccgctt agagcgtgaa aatctaaaaa tagcaagttt
    27961 tggaaaaaga gttctagctt ttttaattga tgatatggtt atttctttga ttgtgtttat
    28021 cattttttat gatcgtctaa tccaagcaaa agatttattt gaaacaactc aaattgtagg
    28081 aaatttttac cttggcttca tcttgcttca ttttagttat caagcaattt ttacttatct
    28141 ttatggagca agtttgggaa aaatattatg caaaattatc atcttggatg aaaatcttct
    28201 tgacaaaccc aatctcattc aaagttgcat caggtctgcc gtaagacaag ttagtgctat
    28261 ggcgtttatg cttggatttg cttgggcttt aagcaatgat ttacgcaaag cttgggagga
    28321 ttatctagca aggacaatag tagtcgatgt ggcgtaaatt ttccctattg ctaggaacta
    28381 gcatagcttt aaatgcagca caagttgata tttacgctct tgatgcaaaa aaagaaggtg
    28441 atattcttac tgcgaacaat gatgttatta ttttttctga tttttatttc atcactgcca
    28501 ataaagcaat ttacaatgaa aaaaccggag atgttgagct ttttggcgat gttaacatcc
    28561 taaggggaca aaacgaaaga tcacattctg attatgctaa aatcaaccta aattccaatc
    28621 aagccgattt tagtaatttt ttcttttcca ataacaatct tgaagtatgg tttcaaagca
    28681 aaacaagcca tctaaatgat aaagtctttg aaagcaaagt ttcagcagtt tcaagctgca
    28741 atgttgaaga tcctgattgg gaaattcgtt tttcaaaagg ctggcttaac cgggaaacca
    28801 attttgttca tctttacaat gcaagattat atgttaaaaa taccccagtt ttttatctac
    28861 cttattttgg atttagcgct gatactcata gacaaagcgg gcttttaatc ccaaaaatcg
    28921 ttttaaaaag tagcgaaggc ttatactatg aacaacctat ttatatagcc actcaagaaa
    28981 attgggattt agaacttgat ccacaaattc gaacaaaccg tggttttgga ctttattcta
    29041 ctttaagatt tcttgattct ccatattcaa caggagaatt aaattttggt gcttttaggg
    29101 aaaatagctc ctattttcac gatgaaaatt tgaaaaatca aacccactat ggaatagaac
    29161 taaaatactc aagagatgat ttaatcaaat ctttactcag tgataatttt caagaaggcc
    29221 tatggataga tgcaacctat ctcaacgatg tggattattt aaatttagga agtagggatt
    29281 atcgagatct taactcgctt gtaacctcca aaatcaatta ttttttagct gatgaaaaca
    29341 atttttatgg agcttatgca agatattata tcgacacatc taaacttagc aacaatacaa
    29401 ccttgcaaga atatccaagc tttcaatatc atagattttt aaataacctt tttgatgaac
    29461 gcctgcgtta ttcatttgat gcttcatttc ataattttta ccgacctgct ggttcttatg
    29521 caaatgagct aaatttagac ttgcctatct cgtatcacaa cgcttttttt ggagactttt
    29581 tacactttac ttttacagaa agattttatg cttcttttgt aaattatagc aacgatcccg
    29641 aaagaaacca tgagcattat ttcagaaaca ctcatgattt taatctctac accgatcttt
    29701 caaaagctta tgaaaatttc tttcatactt taaatttagg ggtgaattac attttaccag
    29761 gagcaaaatc aggtaaaatc acgcaagatt atcttgaaga atacgacaaa gaaaacgaac
    29821 atacaagtct ttatactgtg caatatttct ataacaacga aggacaaaaa aaactcaaac
    29881 acagaatttc acttgactat ctcaataaac aaaatgaatt ctatgaactt gaaaatcttt
    29941 taacttatta ttttaatgaa aacatcaatc tcaacagcga agtgctttac tcttatgagc
    30001 aaagtcgctt taccaatgtc atcagccaaa tagaagtcaa tacaaattca aaatttaatt
    30061 ggatgttttc tcatgcttat caaaacgatg agtatggaaa atatagcttt attggtacaa
    30121 gagcaaatta tattgccaca cctaattaca atttatttgg tggaatttgg tttgatactc
    30181 aaagagctca tgcaaacatg tgggaacttg gctataccta ccaaagaaaa tgttggaact
    30241 attctttaat gtatagagaa agaatcgatc cacaactcac aagtggtggc atcacagcta
    30301 aaaatcaaag cggagtttat tttattttca acttctatcc tttaggagga gtaaaatacg
    30361 atttctcttt agcagaaagt gaaaacaaaa tttaaaaagg atgaaatttg ctaaatattt
    30421 taaaaaattt tacgaattta ttatctggta aaaaaggaaa aataatgcaa tacagcatag
    30481 aaattaacaa aaatacagaa atatttgata tagacaaagt cgccaaacaa gctgccggtg
    30541 ctgttttaat gagacaaggc aaaagcgttg ttctagctac agttgcaaga gaagaaaaac
    30601 aagttgaaga agatttttta cctctaaccg tccaatacat cgaaaaagct tatgccgcag
    30661 gaaaaatccc tggtggttat gtcaaaagag aaaccaagcc aagcgatgca gaaaccttaa
    30721 cagcacgcat tattgataga agcttacgcc ctctttttcc aaaaggctat gcttatccga
    30781 ctcaaatcgt tgtgatggtt ctctcagctg atcctaaagt agatttgcaa gtaatgagct
    30841 taaatgccgc aagcgtggca ctttatctta gtgatatacc tatgaaagct ccagtatgtg
    30901 gtgtgcgtat aggaaagata gatggaaatt tcatactcaa tccaaacaat gaagagcttc
    30961 aaaatagtac cctagatctc tatgtagcag gtgtaaaaga tgagcttttg atgatagaaa
    31021 tgagagcctt acctgatcaa aaagaaaatg aaatctttat cgaagctcct tatgctgatg
    31081 ttttaactca aaccacttca caaaatatga atgaacttag cgaagatgaa attttagaag
    31141 ctctaaattt agctcaaaaa gctatattaa atggttcaaa tgcttatgaa gaagccttta
    31201 gcaaacacga aaaaaattct caaatcgaac taaaaaatga gattgaatat cctgaaattt
    31261 tagcttttat agaaaataat ttccaaaaac aaatcaaaga agccatcaac caaatggcaa
    31321 aaagcgaaag agcaagcgaa ctaaataaaa tcgctaaaga aatttcaaat cttgaaatcg
    31381 ctaaagagtg gagcgaagaa agtgtcttaa ataccttagc taaagtcaaa cgcaaactta
    31441 ttcgtgagca aattttaaat gaaggcaaaa gagctgatgg tagaagttta aacgaagtgc
    31501 gtcctattaa tatagaaacc aacatcttac caaacgctca tggttcttgt cttttcactc
    31561 gtggacaaac tcaagcccta gtggttgcaa ccttaggcgg agaaaacgat gctcaaatga
    31621 tagacttgct tacagaaaaa aatcctataa gcgaacgctt tatggtaaat tataattttc
    31681 caggtttttc agtaggcgaa gcaagtccta tcaaagctcc aggaagaaga gaactaggac
    31741 atggaaattt agccaaaaga gcactttatc caagtgtgga tgaaaactat ccttatgtaa
    31801 tccgcttagt cagtgaaatt ttagaaagca atggctcaag ttctatggca acggtttgcg
    31861 gcggatcttt agccttaaaa gcagcaggag tgccaagctt aaaacttgtt gcaggagtag
    31921 ccatggggct tatctttgaa gataacaagt atgctgtttt aacagatatc atgggacttg
    31981 aagatcatga tggggatatg gactttaaag tagcaggaag caaagacggc gttactgctc
    32041 ttcaaatgga tataaaacta ggtggaatcg atcaagaaac actaaaacaa gctttatacc
    32101 aagccaaaga aggaagaatt cacattctaa atatcatgga agaagccgcc aaaaaaatca
    32161 tagtcaatga agaagtttta cctaaacttg agctttttag cgttgatcct tcaaaaatcg
    32221 ttgatattat aggacaagcc ggaaaaacca tcaaagaaat cgtagaaaaa tttggcgttt
    32281 ctatagactt agatcgcgaa aaaggtgaag taaaaatagc aggtagtcaa aatgagcaaa
    32341 tcaaagccgc aaaagactac atcataaaca tcacaagctc tcaaaaagga actaaaaaag
    32401 gctctaaaga caaagatata tcaggctttg aacttgggca agaatttcaa ggtattgtta
    32461 aaaaaatcgc tccttttgga gcctttgtgg aacttaaaaa tggtgttgat ggtttattgc
    32521 atagttcaaa aagcaagcat cttaatttaa gcgaaaacca aagcttaaaa gttaaaatca
    32581 gcgaaattaa aaacggaaaa atttctgtgg atttgtgtga gtgagcgaat ttctaactca
    32641 tccttttgag cctttttttg acaaagattc taaaatctta attttaggat cttttccttc
    32701 ggtaaaatca agacaagatg gcttttatta tcaacaccca agaaatcgtt tttggcctat
    32761 actagaaaca ctttttgatg taagattaga aaatatcaca gaacaacaag cctttttaag
    32821 aaaaaaacat atcgctcttt gggatgtact tcaaagttgc aagataaaaa attcagatga
    32881 taaaactata agttatgcaa aagccaataa tttaagcccg atcctttctc aaaccaaaat
    32941 ccaagccatt tttactactg gacaaagtgc ttataaattt tttattaaat tccaccctcg
    33001 cttaaaagcc atagctctac cctcaacttc tcctgcaaat ttaaattttt cttttgaaca
    33061 gcttttacaa aactatgaaa taatcaaaaa atttacaaaa taacaaacta agcattaccc
    33121 ccccccaagt aaaacaagaa aaaagctagt taatatctag cttttgcgtg ttatccttga
    33181 attcaaattc cactctctta gctccaaaac ctttagcaat agcttctaaa gtatccttag
    33241 cacttttatg aattttactt tctaaatttt ggataagatt taaagacaag tctttaacct
    33301 catctttggc ttcttttatg agtttgtttt tatcactttc gctaaaacta atccccgtac
    33361 tattgataga atcaggcagt aaaaaaggta aaaatttagc atttttttca tcataaaatt
    33421 tcatatctat gatgctgtgt ttgtatctac actctggcat gatgatctta taagcatcgt
    33481 cccctaaagg caaaatatca aagtttttat cccttaaatc atacaagaaa gtgatctcaa
    33541 attcaaaaat caaagcaatc tgtctttcac tcaaagacca tcctaaaaga tttttccaaa
    33601 ttccattaaa agcgctatct tttttagtga caatctcttt actaaaaact tgaaaaacac
    33661 ttaattctcc tatggattta agctgcatga tatcgctaaa actttgcgtg cttttttctt
    33721 ctattttagg gcttttatac tgcctaaaaa gcactacaaa caaaagtaca agtaaaatca
    33781 tcactaaaac aaataaaatc atttccattt taaacctttc taaatttata aaccttgatt
    33841 tgaaaagata tattttttct caaacgctaa gaaaataaaa gcattaatga taaaaatcaa
    33901 acacacaaaa gtaaaaacaa attccacgct aaaatgtgaa gccataatcc ctccgccaaa
    33961 agctccacaa aaatttccca aaaattgaca agtttgatta aaaccaaaaa tcacacttaa
    34021 atttttagca ctcacacttt ttttaagcaa ggcattcaca caaggcaaaa gccctccaag
    34081 tcctacacct ataagtaaac gcacgaaaat aagcgtataa acattactta ctacagcctg
    34141 caaataaaag taaattccac aaaatatcaa agctccaaaa ataatcttac taggccctat
    34201 cttatcggcg atttttccaa gttttggtgc gaaaaaaaga ttgctaatcc cacttgcagc
    34261 cactactata cccgcccaaa gagccaaatt tccaccttga tgaatttgct caacatagat
    34321 acttaaaatc ggcatcactc caaaagtacc aaattgtatc acaaaagtag tgataaaaag
    34381 aacgataata agggttttgt tttctttcac tttttgagta tttttcttcg cctctttttg
    34441 aatttttctc tcatggatga aaaaataaat cgtcacaaaa gaacaagcga tcaaaaaagc
    34501 caccatatca aaaaccgtac taatactaaa aaattcagcc acaaagccac caaacaaagg
    34561 cccaagcaaa cttccactta tagaagccgt agaaagagtt cctaaagcat aagccacttt
    34621 ttctttaggt gctatcacag cgataaacac aacagcagca gaagtaaaac ctgaaattat
    34681 ccctgttaaa ccccgcacaa aaactacttc taaagcacta tgagcaaagc taagccataa
    34741 ggttaaaacc gacatcccaa aacttgcacg aagaagcata tttttataac catactttgc
    34801 acccaaaaaa gcccacaaag gtgaaaaaac agccataaaa agtggagtga tcccaaaagc
    34861 aagccctgag taaaacgcta tttcactcgt atcaacatgt cctagttctt tgatataaaa
    34921 aggcaaaatc ggagcgattt gactaagccc catacttgtg gtaaaaacac caaaccaaca
    34981 cacaagcaaa gttctattga aattttccat ggatttattg tatgatattt tttataattt
    35041 ttaattaaaa ctcaaggata aaaatgaaaa aaatactctt tatatgctta ggcaatatat
    35101 gccgttcgcc tatggcagaa tttatcatga aagatcttgt caaaaaagca aatttagaaa
    35161 aagaattttt tataagcagt gctggaactt caggagaaca cgatggagaa ggtatgcact
    35221 atggcaccaa aaacaaactt gctcaactta acatagaaca caaaaacttc acaagcaaaa
    35281 aactcactca aaagctttgc gatgaaagcg attttttaat caccatggac aattctaact
    35341 tcaaaaatgt tttaaaaaac ttcaccaaca cccaaaacaa agttttaaaa atcactgatt
    35401 ttagtcctag tctaaactac gatgaagtcc ctgatccttg gtatagcggg aattttgatg
    35461 aaacttataa aattttatcc ctagcttgta aaaatttact tgttttttta tcaaaataat
    35521 ttaaaacaac tatatattac ttctcgttta ctttttaggc ttatacttct aaacgaaccg
    35581 aaaaacattc ataagaaaaa ctccttaaaa ttacacgcct agcttaaatc cctttagcta
    35641 ggcttttctt tagatgtttt tatccttcgg atttaaaatt tttactattt taagtgcttc
    35701 ttaagaaaaa actccaaatt tatgtgctac aattacaatg ttttattaat ttttgacaag
    35761 gagaattctc atgaaactag ttaaacttag tttagttgca gctcttgctg caggtgcttt
    35821 ttcagcagct aacgctactc cacttgaaga agcgatcaaa gatgttgatg tatcaggtgt
    35881 attaagatac agatacgata caggtaattt tgataaaaat ttcgttaaca actcaaattt
    35941 aaacaacaac aaacaagatc acaaatatag agcacaagtt aacttcagtg ctgctatagc
    36001 tgataacttc aaagctttca ttcagtttga ctacaacgct gttgatggtg gcactggtgt
    36061 tgataacgta acaaatgccg aaaaaggact ttttgttcgt caattatact taacttatac
    36121 aaatgaagat gttgctacaa gtgtaatcgc tggtaaacaa caattaaacc ttatctggac
    36181 ggataacgct attgatggtt tagttggcac aggtgttaaa gtagtaaata acagcatcga
    36241 tggtttaact ctagctgctt ttgctgcaga tagcttcatg gctgcagagc aaggtgcaga
    36301 tttattaggg catagtacta catctacaac acaggcaaca gctcctttta aagtggattc
    36361 agtaggaaat ctttatggtg ctgctgctgt aggttcttat gatcttgctg gcggacaatt
    36421 taatccacaa ttatggttag cttactggga tcaagtagca ttcttctatg ctgtagatgc
    36481 agcttatagt acaactatct ttgatggaat caactggaca cttgaaggtg cttacttagg
    36541 aaatagcctt gatagcgaac ttgatgataa aacacacgct aatggcaatt tatttgcttt
    36601 aaaaggtagc attgaagtaa atggttggga tgctagcctt ggtggtttat actacggtga
    36661 taaagaaaaa gcttctacag ttgtaatcga agatcaaggt aatcttggtt ctttacttgc
    36721 aggtgaggaa attttctata ctactggttc aagactaaat ggtgatactg gtagaaatat
    36781 cttcggttat gtaactggtg gatatacttt caacgaaaca gttcgcgttg gtgctgactt
    36841 cgtatatggt ggaacaaaaa cagaagctgc taatcattta ggtggtggta aaaaacttga
    36901 agctgttgca agagtagatt acaaatactc tccaaaactt aacttctcag cattctattc
    36961 ttatgtgaac ctagatcaag gtgtaaacac taatgaaagt gctgatcata gcactgtaag
    37021 acttcaagct ctttacaaat tctaagaagc tttcaagtct aacttcaagg cggagttttg
    37081 ctccgccttt ttttatgcct gatttttaaa acttaaattt atataaaaaa ttttcccaag
    37141 ctaaaacgct ttaggaaaat taagacttaa accaattagt gattttttca aaaagccctt
    37201 tttgctcttg atgcatacca tctttgatgc caaaactttc acttagtttt tctaaaagtt
    37261 ctttttgttc atcgtttaaa gaagttggga atttgataga aatttgaacg atttgatttc
    37321 ccatgcgaga actatgaaca tcttttaccc cttctttttc aagaacaaat ctttgtccat
    37381 ctttagcacc ctttggtaaa tttaaggtcg cttcaccgcg tatggtgggt acttttatac
    37441 tctctcctaa gatagcctgg gtaaaaaaca ctggaaattc tatatatata tcatcatcat
    37501 ctctgataaa agtatcatct tcagcggcga tgatcttaac atacatatcc cctctagtac
    37561 cattttttaa gatattacct ttagcattga cacgaagctt catacctgta tctacacctt
    37621 ctgggatatt aagctcgaca ctatctttgc tttcattata acccaaacct ttacaatcac
    37681 tacatttttc actagctttt tctccaattc cttgacaatc agggcaagtt tgtgcaaaag
    37741 tgataaaacc ttgagaaacc ccaacctgtc ctctaccttg acactttgga caagtttgaa
    37801 gctttccatc tttagcccct gttccattac aagttttaca agagcattta taagtaaagt
    37861 ctatattttt cttacaacca aaaaccgctt ctttaaaact taattttaaa ttaacgataa
    37921 aatctgaagg gattttctca tcatttgaac tttttctacg acgtgatgag ccaaagcctt
    37981 ctccaaaaaa actagaaaat atatctccta aatcctcaaa accaccaaaa cctgagctac
    38041 tagaaccaaa tccaccgcct tttaaagcat cttttccgta tctatcataa atagctcgct
    38101 tttcatcatt gcttaaaact tcataggctt cattaacaag cttgaattta tcttctgctt
    38161 ctttatcacc ttggtttcta tcaggatgat attttaaagc catttttcta taggcttttt
    38221 ttatggtttc tttatcagca ttttgcgtga tttcaagaat ttcataataa cttatttcca
    38281 cattattcct ttaaaaaatt taaaatttta ctagaatttt aattttaaaa attcaaaaat
    38341 ataattttag caaaaataaa atcaataatt tatcaaattt taaataaaat tatgtaaaga
    38401 ttttaaagac tacataaaaa tttacaagga cactagaatg attaatgtgt tgatgataga
    38461 agatgatcct gactttgcac aattattatc tgaatattta gcgcaattta atattaaaat
    38521 cacaaatttt gaaaatccta aaagtgcttt aaatgtgggt attcaaggct atgattgtct
    38581 gattttagat ttaactttac ctggaattga tggtcttgaa gtttgtagag aaatccgaca
    38641 aaaaagcaat attcctatta tcatctcatc ggctagaggt gacttaagcg ataaagttgt
    38701 ggggcttcaa atcggtgctg atgattatct accaaagcct tacgatccaa aagaaatgta
    38761 tgcaaggatt atgagtctta ttcgtcgcac aaaaagagtt gaacacacta ataatgaaaa
    38821 tattaactct gctttcaaaa ttgatgaaag aagacatgag atcacctatg aagataaggt
    38881 tttaacactt actcctgctg aatttgaaat tttagaatac cttatccaac aacacggata
    38941 tagtgtttca agagaacagc ttgtaagtcg ctgtaaaaat ctaaaagata aagattctaa
    39001 aagccttgat gttatcatcg gtcgcttaag ggtaaaaata ggagatagtt caaaatctcc
    39061 aaaacatatt ttttctgtta gaggtatagg atataaactg ataggatgac aaaaaattat
    39121 tctattcata ccaaactgat tattttattt gttgttactt ttttcttggt ttgtgtgctt
    39181 tttatcgttc ttttaaaaat agaagggaat acctataatg aagaagaaag tttaaaacaa
    39241 gaaaatctta taaaaaattt actcatctcc tatgaaaaca cttcaggtgt tgaaatagga
    39301 gcttatcttg gaaacagcgg ttttaacgct atacaaaatc ccaatcttgt aaaagctata
    39361 agaaataatg gacaatcact ttttaaagca ggcggagagc tttgtactct ttcttcttta
    39421 aaatatcata gcaatcttta ttttgatgtt caatgtaaag attttgatgg cttgtatgaa
    39481 gaaaatacta gtgatagggt ttataatctt ttattgatag gatttttctc tttttctttg
    39541 ttggttgttt ttatgtattt ttctgtatta aaatccttag aacctttaaa aaaattaaga
    39601 agacaagttg ccgaagttgc aaatggggaa caacctgatt ttctagacta tcaagaagat
    39661 gaagtaggca agatcgcctt tgaatttcaa aaagctttca agaaaaacca agaattaatc
    39721 caatcaagac aacttttcct aagaacaatc atgcatgagt taaaaacccc tataggaaaa
    39781 gggagaatca tttctgaaat gatcaaagaa gacagacaaa aagaaagact tatcgctata
    39841 tttttacgca tggattcttt gatcaatgaa tttgccaaaa tcgaaaattt attttcaaaa
    39901 aactacaact tacactttaa acctagtcgt tttagcgcta tacttgaaga agctaaagaa
    39961 caccttatga tagatgattt taataaagtt gtaaaagtcg atataagata tgacgcttta
    40021 atcaatgttg atatggaaat tttctctgta attttaaaaa atcttatcga taatgcctta
    40081 aaatactcaa acaatggcac ttgtgagctt ttttgttgta aagaatgttt taccattaaa
    40141 aatccaggca aacctttagc agaacctata gagcattatc ttgaagcttt tacaagagaa
    40201 aaacacaatc aagtcaaagg tatgggacta ggactttata tagtttcaga ggtatgtaaa
    40261 ctgcataatt ttgatttgat ttatttttat gatgatggaa agcattgctt taaaattttc
    40321 tttggagata aagaaaaata atggtaaaag gcctggaaaa attcaatgaa cttgttgaaa
    40381 gttttgcaaa tttacctacc ataggaaaaa aaaccgccat aaggcttgct tatcaccttt
    40441 gtataaataa tcaaatcgat ggtatgaaac tcgcacacaa tatagaaaat gctatccgct
    40501 ttataaaacc ttgtgagcaa tgcggtgctt taagcgaaaa tgagctttgc gaaatttgta
    40561 gcgatgaaga aagaaataaa aacattttat gtatagttga aagcccaaaa gatatactaa
    40621 cactcgaaga gagtcaaagt tacaatgggc tatattttgt tttagatgag ttaaatgaag
    40681 aaaaacttga aaaactaaag caaatcatac ttaagctaaa tatctctgag ctcatttttg
    40741 cattgacaca tagcattaat tctgatgcaa ctatcttttt tatagaggat aaatttaaag
    40801 gcttaaacct aacttttagt aaaatcgctc aaggaattcc aagtggtgta aatttagaaa
    40861 atgtggattt aatctcttta aataaagcta tgaattttag aacaaaaatt tagtaatttt
    40921 tataagaaat atcggctaat tcttgcaaag aaaaatccgc aatcttttca taagtaaaac
    40981 cttccttgct taaaaagtca agtaaagttt tttccatgat tttagctcct tgtataagct
    41041 catctgagag cttaaaactc atcgcttcaa tacgctttgg cacacaagct aagatatgtg
    41101 ttttaggcaa atctcctgca agttccatgt attgtaaggt ttgaagcatt tctatttcat
    41161 gggcacttcc actccagcta attttattag gcatagcatc ataaggaaag aaaaatacat
    41221 ctcctatact cgcaccttgc gcttctatac agtctaaaac gataagtcta tcgtacctag
    41281 caatgatata gctaagctgc aaagccaaag ttccaccatc aacaaaatct aaagtaaatt
    41341 cagaatgagt gaatttgtag tttttttcaa gttgtttgca aagatgaacg cctaagcctt
    41401 catccgcaaa catgatatta cctattccaa ggactaagaa tttcaatgct tttcttcttt
    41461 tacaaattta tatccgctaa taatagcatc catagcacca tctttacctt ttactgcgtt
    41521 aaaaatcgcc atgtaaatat gtactggcac aaaaatcata attacccaca tcaaaattct
    41581 atgataagtt cttacatcgg ccaaaccgcc cattgcagct tcaagcggtc ttaaaatatg
    41641 atataaaagc ccacctaagc cctcatggta agtatgagta taaagaataa gccctgtaag
    41701 aatgatacct aatatcacaa gataaaagaa aaaataagtt acaaattgca aaggattata
    41761 aacccctttt aaatgcggat gttttcctaa gaaaatgtaa aattttactt gttctatcca
    41821 taatttgata ttaaaaatat cccatacact tctgcgttct tttgcgctta ccttatcgca
    41881 gaaaaacaaa tatactttaa aaataataca agcgattaaa acaaaaccca ccgcttgatg
    41941 tactaagcgg tattttgctt gcataaaatt tacgggttca ccgttactaa tagggctttg
    42001 gaacacatag gaaagataat accctgtgcc aataagaatc actatagcaa tagctcttac
    42061 ccagtgcgtt aaacgcaaac ctatgctaaa ttcatattca gcttttcttt gcaatttttc
    42121 ttctttgttt tgcatgaaag cctccttata aattgacatt cactttatat tcacttagat
    42181 tattgccctt agtatccatt acatgcaccg cacaagcaat acaaggatca taagagtgaa
    42241 tttttctaat gatttcaagt ggttgtttta catcagcgat tttaagtcct atcaaacatt
    42301 gctcataact tccgcctacg ccatttgcgt cttttggact tgcattccaa gtagaaggca
    42361 ccacagcttg ccaattttca ataacaccat ttttaattct acaccaatgg cttaatgttc
    42421 cgcgtggcac atgccccata tagcgtcctt tgtattcttt agaattatcg atcacataag
    42481 gagcacaagt actctggtct acttttaaat tttcaactaa attattaaac gcttttaaag
    42541 cattgtttgc aacgattttt gcttcaatac aacgagcagc tgttcttcca agtgtactaa
    42601 atacagcatt taaaggaagt cctgtttctt ttaagaactc atctactaca ggaacaacat
    42661 tttgattacc tttagcataa tttacaacga tatttgctaa aggtcctact tgcatagggt
    42721 ttccttcata gcgtggagct ttaatccaac tatatttacc cttagtatca aacactttag
    42781 aatgaacatg atttccatga tgatctacgc tttccccatc tacaagtcct gtataatttg
    42841 gatttgtttt gccgtcataa ggatgtaaag gttcattgtc tgcataccaa gaatgagttg
    42901 cctcttcagt aatcttatct tcttctactt cataaacctt gcttaaatct ccatttttga
    42961 taataccact ttcaaaaagc cattcatctc ttccgatttg aaattcttta aaggtgtaaa
    43021 gattatttac ccctatatca tttaaaacac ttgcttcatg tgcataagct tttcctgcca
    43081 tcacaagatc aggataatac gcacgattaa caaagtcttg cacttcttgg aatttaacca
    43141 tatattcacc cattcttgca ggatcaagta aatccataac gcaagttaca ccaccaacgg
    43201 ttaagctttg tggatgtggg tttttagctc caaaaatcgc catacattga gcaatgattc
    43261 tttgaattct taaacattct agatagtgag aaagaacgat taaattttgc tcaggagtta
    43321 aacgataagt tggatgacca tagtacgcat tagcaaaagg tcctaaattt cctttatcta
    43381 caaaagtttt aagtctttgt tgcacttcaa gaagtttatc tgcacctgtt gcataaggat
    43441 ttgaagtgta tttaaaagct tcatcgcttg cttttttaac atcagcactt aaagcactta
    43501 ccacatcagc ccaatcaagc ccatgaagtt gataaaaatg cacaatatga tcgtgtaaaa
    43561 ataaagccgc attcattaaa gttcttgtta aaagcgcatt taaaggcgga gtaataccta
    43621 aagcattttc aacagcaact atacctgctt tataatgtga aaaagtacaa actccgcaaa
    43681 ttctttgcgt cataaaaccc gcatctcttg gatcacgccc ttttactatg gtttcaatac
    43741 cacgccacaa agtagagccc gcataagctt cttttaccac attgttatca tcaacaacaa
    43801 cctcaactct taaatgccct tcaattcttg taataggatc tacgattatt ttttgactca
    43861 tttttattcc ttatcttttt gcatggaaga tataactgcg tgtgctgcta tagcaacgcc
    43921 tgtgagtgta agcacaccta taccaatttt atctgaaaca ctatccgcac ccaaaccaaa
    43981 aacagtatca aatttacgac tagccatagg ctcttcaaaa ggtcccatag tatcccaaaa
    44041 attaggctca gaacaaccta tacaaccatg ccctgcttga ataggccaag aagtgtgctg
    44101 gttaaatctc tctcttgagc agttattaaa agtataaggt cctttacaac ctactttata
    44161 aagacaaaaa ccttgttttg ctccttcatc tccaaaagca tgtacaaatt cacccgcatc
    44221 aaaatgtccg cgtctttcac aaagatcatg aattcttaaa ccataagccc attttggtct
    44281 attatacaca tcaagtgctg gtaactcacc aaataataaa taatgaagta cattacccac
    44341 tatatttttt tcacttggag gacagcctgg aacattgatc acagttttac ttgttacttt
    44401 gcttaaaggc tgcgcgttgc taggatttgg tcttgcggct tgaattcctc caaagctaga
    44461 acaggttcct atagcaaaaa tcgccaaagc attttcactt gccatttttg aaagctcata
    44521 gcctgttttt ccatgtgcac ctatggttaa aaaatgctcc gtatcaccca tagggatacc
    44581 accttcaacc attaaaatgt atttattttt atgcttttga atggcatttt ctaaattttc
    44641 ttcagcttgc caacctgctg cagccatcac tgtttcgtga tattctaaag aaatataatc
    44701 aaaaatcaaa ctatcaatcg ttggagtatc acttcttaac aaactctcac tacagcctgt
    44761 acactcagcc atatgaagcc acacaacagg aagcctatca gcaagctcag cagcttttgc
    44821 caccatagga gtaaaactcg ctggcaaagc caaaaatgcc gtcatagcac ctgcccattt
    44881 cataaaatcc cttctagaaa aacctgactt ttctaatgct tttgtaatac tatcattgtc
    44941 tttcaaagaa ggaagttttt caagagtcga taaacgcgac tctatttgat gataatcaat
    45001 cattatattt cctttgtaac atgaaattta ttctctataa taataaaata aaggaagtta
    45061 aaataaagtt aaaaacttac tatcataagc aaatattagc atcactctta attaaagctt
    45121 aatcataagc cttttttaag tttgcgaatc aaaaatcttg caggatgaat agcgtggatg
    45181 tatttttttt ctaaacacaa gggttcatta tttatcaatg cacacaaata ccttgccgct
    45241 aaaacacttg tactaaaacc ccttgaccca tgagcaaaat taaaatacaa attacaagac
    45301 attttagctg gtttttgctc cttatttttt gtccataata aagctttata tttttcttta
    45361 taaaacgctt catcataagc atttccaact atcataaagc gatcactcga ataagatcta
    45421 aaacctactt tagaacctat gatttctaat tttgtatttt tatccataaa atcggctata
    45481 ttttctatat tttgtttatc atcttcttct tttgattcta aacttgcatt aagcctatca
    45541 taacttgcac caattacttg caaatcatct tttacagggc aaatataagc cttagaagat
    45601 aaaggaaatg gggtatctaa aaaaggtttt agatgtgtaa cttgacctct tactttgctt
    45661 aatttcatct catcataaaa aacaaagtct tttgcatctg cacccatagc ataaatcaaa
    45721 accgcataat cacttttaac aacatcattt ttaaatttta aactaaaaca cccattttca
    45781 aatttataag cttgaaattc atgattaaaa tatatacaag ctttgctttt ttcaaaaaga
    45841 tttttaacca atttttttgg aaaaatcact ccaccctctt ctaaaaaagc ttgatttttt
    45901 gaaattttaa acaaaacatt ttctctttgc gtgtcaaatc tttcttgcat taaatcatta
    45961 tgtgcaaact ccaccacacc cttaaattct aaatctaaaa tttgtctata aaaacgactt
    46021 gcctctataa aagaaagctc tgaaaactcc cctaaattta ccttaggctt taagattaaa
    46081 gagcttaaaa ttccactttc atttccactt gcacccttgc ctaattctaa atgtttttca
    46141 aaaatatcta tttcaaaacc tcttaaacta agctcataag ctaaaacagc acttgatata
    46201 cctgcaccaa taatagctac ttttttattt tttaaagatg aaaatgttct tgaaaaatac
    46261 gcttctttgt ctttaaactc aagctcattt tccaaataag ctttaatcat ttctcttttt
    46321 ctaaaacctt tggttttttc tactctaaaa ccatattttt ttaaattttt ttgcaaaaaa
    46381 cttgccgaag aaaaggtgca aatttgtgta ttttttttag aaagtcttgc cacttcaaag
    46441 attaaatttt catcaaacat ttgcaagttt ttatttggag aaaatccatc taaataccaa
    46501 acatcagctt taaaatccaa ttcttttaaa acagctatat cttcaaaaac aagatctaaa
    46561 aaacaatctt caaaataaaa acgataaatt ccttctttag ccttaggata aaattttaaa
    46621 aattgttcta aaagctcttt aaactcttca taaaattcta gtttttgata aatttctctt
    46681 aattgttctt tttcgatata aaaagcttct acgctaatat aaaaaagttt tttaggacgc
    46741 ttagaaggga tagtttctaa aaagcgtttc aaagtaagaa aaaaatttaa acctatacca
    46801 aaaccactct ctgcgataat aaaattttct tgatttttcc attcaaaaga atgagtgtaa
    46861 acaaatttgc tttcatttaa gccatctttg gaattaaaat aaaaatcatc aaaatccaaa
    46921 gaaaaaggag tattatcctt aaaaattagc ttagcttttt tcatcggttg ttataaaaat
    46981 aactctcaac tccatcggca atacccttaa ccaataaatc ttgaaaagct ttattggcga
    47041 ttcttttgcc ttcatttgga tgtgtaatat agccaatttc aatcaaaatt gcaggcattt
    47101 gcgcacctac taaaacccaa aaaggtgctt ctcttacacc gccatctaca attttatact
    47161 ttttgcgtgt ttgagtgagt atattttttt gtacatcaat ggctagttta tttgaagcaa
    47221 cgattttttc acgatttaag aaatttaaaa tactttgttt tgagaaataa ttaatctctt
    47281 caaaatcccc ttgattttct ttttctgctg cctttttact tctttcactt cttgcaggac
    47341 ttaaaaagaa agtttccacg ccttcgctac ttttggcttt tgtggcattt ggtgctgcgt
    47401 tagcatgtat agaaataaac aaatccgctc ttttatcatt ggcatatttg gttctatcac
    47461 gaagattgat aaatttatcc gaacttctag tataaagcac tttataaccg cgttttttaa
    47521 gttcatttcc aagttttaaa gccgtactta aaactatatc tttttctttt aaacttcctt
    47581 ttttatcact taaagcaccg ctatcttttc caccatgccc cgcatcgata accacaagct
    47641 ttcctgattt gtaatttgta tttaaagttt tactagaact ttgagttgct tttttgtttg
    47701 cattttgatt tgtagtttgt atataaaaac ctaaagtgag attattatta tccaactcct
    47761 ttaaaagttt aaattcttta ggagcactca aaaccacacg aacggttttt ggattgtatt
    47821 gagtaactgt aatcacattt tgtccaaaag taaagctttt tctattacct tctaacacac
    47881 ccttaaaact tacaacatat cggaattttt gatctttggt atcaaatact gctatttctt
    47941 tttcatctaa atcatcgctt aaatttaaca ccacagcatt agaaatttta tccacatcta
    48001 aaacatataa aggttcttga ttttcttttt cattattggt ttttttatct tgtttttttg
    48061 tttctaaaac tttggtttta atttctgttt tttgatcttg ctttttctct gaaattttac
    48121 taacttgccc agtctttttt tggctagtag tttcttttga aaaaattatt ttttcttctt
    48181 taaaagatat atcaatagga attttttctt tagcataaac cactatgcgt atggttttgg
    48241 gattaaattg tgaaatcact aaacgatagt catcaaattt aaactctttt ttactccctt
    48301 ctaaaacccc atcaaaatca ctaataaaac gatagtttcc tttttcgtct aaagcaaaac
    48361 tttttaattg atccttatcc aaatctgcat ttagttcaaa ctctacacct tggtttgttt
    48421 tacttgactt taaaacataa attttatcat cgctttttgc tttagaaacg atactgctct
    48481 ttggtgcttg cgaagtttta gaatttgttt tttctgtatt ttttatttgt tcgttagatg
    48541 attttttttc atttttttga actgttttta taggttcaaa agttgatttt tcagtgtctt
    48601 gagaaatatt ttgaacctta atatctttaa taacagcctt tcttaaagca ttaatacttg
    48661 cttcacttat accactttct tttaactcat tagcatatga cttgtcatct aaatttaaag
    48721 tatttgaact gatgatcaat ctttttaaaa tttcaatttt agttttttca tcttcatgaa
    48781 taacactttg tatataaagg cttttgagct gatggtgaaa ttttacttgc acttcacttt
    48841 tagaaccgat aaaattttta tcaaaatttg caagttcatt ttcataagct ccaaaaagag
    48901 ttgtgaaagc aaacactaaa aatacaaaaa ttttagccat tattcaccat taaccaattt
    48961 ttccataagt tctttaacac tgataagctt atctaaacga tatccatttg cacctgtaaa
    49021 gaaaagtcct gtttcttttt tgcctgacca cgcatcaaaa agcctatctg ctatacaata
    49081 ccctacttta gtcgcctctt ttccacgtcc acaaggcgct acacaattgc ttatacaatt
    49141 aatctttgga cccattcttt tatctaccaa atttaaaaga ttggttctaa ctccacgagc
    49201 aggatagccc acaggagatt taataagctc tatatcttct tctttagaag ctagcaaaac
    49261 gcttttaaac tcttcactcg catcacattc aaaagttcct atgaaacgcg ttcccatttg
    49321 aacaccacta gcccctaaag aaatagcatt ttctatatct tttttatccc aaattccacc
    49381 tgcagcaatc acgggaaaag acccccaatt tttagcctct tctaccacag gagcgattaa
    49441 tttttctagc tgataatttg gatctaaaca ctgctcataa gtaaaacctt gatgacctcc
    49501 actttttggc ccttctaaaa ccactgcatc aggcaagcga ttgtaacggc tttgccatct
    49561 tttgcaaata atttttaaag cctttgcaga tgaaatgata ggcactaaag ccacatcagg
    49621 aaaatctgca gtaaattcag gtaaatttgt aggaagtcca gcacctgaaa caatcacatt
    49681 aaaaccaacc tcacaagcat cgcgtgctat tcttgcataa tcattacttg cacataagat
    49741 attacacccc aaaggtgcat cgccacaaac ttttcttgca ttattaatca aagcttgcaa
    49801 acccttgcgt gagtaaaaat tttcacttcc ataaggctta gcatttaatt ctttacttgc
    49861 atactttctt tcttcataat atcctgttcc cacagaagaa ataatcccaa gtccaccatt
    49921 taaagaaact gcagaagcta atctatccca gcttatgcct agtcccattc ccccttgaaa
    49981 aatgggatat tttatagtat gttttcctat ttgtaagggt tgtaaattca ttcttttacc
    50041 tttaattttg caaattttct tttacctatt tgtaagatgt attctccttg ttctaaatac
    50101 atttgctcgt cgctaacttt ttgagaattt acacttactg cattagcact gatgcttctt
    50161 cttgccgcag aagtagaact ttccaaacca cattcaacca aagccttagc aagccaaatt
    50221 tttccttgta tttcaaactc agccatatca cttggcaaag cattttgaga atgaatttta
    50281 tcaaattcag acttagcatt attagcctct tctttggagt gaaaacgctc tgtaatctct
    50341 aaagctaaat tttctttagc ttttttagga tgtaaattgc cttgttctat atcttttttt
    50401 atttgcgcaa tttcttctag acttttttga cttaaaagtt cataatatct aaacatcaat
    50461 tcatcactaa tacttaaaat tttagcatac atatcattag ctttttctgt aacaccaatg
    50521 taattattta aactcttact cattttgttt acaccgtcta aaccttcgag taaaggcatc
    50581 ataatcacag cttgttcttt tcctatgtta taaactcttt gaagctgtct tcccatcaaa
    50641 agattaaatt tttgatccgt tccacccatt tcaatatcgc tttttaaagc cacactatca
    50701 tatccttgaa gtaagggata taaaaactca caaatcgaaa taggactttg ctctttaaat
    50761 ctcttggtaa aatcgtcacg ctcaagcatt ctagctacac taaaagttga agtaagctct
    50821 actatacccg cggctccaag ttcattaagc caagtagaat taaacttaat ctgtgttttt
    50881 tctttatcca aaaccttaaa aacctgcgtt tcataagttt tagcattgat taaaacttgc
    50941 tctttatcca gctttttacg cgttgcactt tttccacttg gatcgccaat ttgtcctgta
    51001 aaatctccaa tcaaaaactg cacaatagct ccatgttttt gcaaaaaagc catttttgtt
    51061 aaaaccacgc tatggcctaa atgtaaatca ggcgctgtag gatcaaaccc tgcctttata
    51121 aagaaatttt cacccttttc ataataattt ttaattaaat tttctattct ttcttcatca
    51181 ataagctctg cacaaccacg cttaacttct gctaatattt tttttatatc cataataaac
    51241 ctttttaacc ttctttataa gcatcattta aagatgtaaa atctaaaatt ttacaacgag
    51301 attttaacct atccttgaca ctatctggat tgatattatc aggaatttcc attgtaatct
    51361 caaaataatc taccgccgaa tttaaatcac ttgataaatt aattgttaat aaatttatct
    51421 gcattttagc taaaaatgcc aaaaattccg ctaaaacacc ttttttattt tccaaagaaa
    51481 aaatcaattt ataagattta gggatgttag aatcccattt tataaatacc atatcttgat
    51541 tattatctat cattttatca gctctatcgc aaagcttatg atggacaata gcgttaccac
    51601 ctttaacaaa agctaaaaca gcatcgcctc tttttggatg gcagcaaaaa tcaaaatcca
    51661 cattagcgat tttatggtta caatatagag taaaatttcc tattttttgt tctttaatct
    51721 catatttatc aaaccaatat gacttcttgg cgtatttttt aagaccatta actatatctt
    51781 tcaaataagc actatctgtt gctacttgtc taatacgtct ggctaaattt tctttttcta
    51841 tccaagtttc aattctgttt ttatcaactc caaaaataaa acttaacata ttaatagaac
    51901 ttgctagatt aatctctctg attttttgct tacaaaattc ccttatactt gcttttgctt
    51961 ttcctgtttt aacactatct atccaagaac agcgataaaa tttatcattg ctagtaacca
    52021 ctcgcacaat atcgccattt ttaagctcgg ttaacaaagg cactttaata cgatttacat
    52081 aagcactttt tgcatgaagc cctactttgg tatgcacttc ataagcaaaa tcaagaaccg
    52141 ttgcaccacg aggcaaagtg aaaatttctc ccttaggaga ataaactgcg acatcttcaa
    52201 cataaagact atctttagca tattcataaa gttcaatagc attataatct tctgcacttt
    52261 caagattgtt tatactttgc attgaaatat ctgtaagcca atcaagacga ggcgcaacca
    52321 cactgccatc ttctttatat ttccaatgcg ctgctatacc aaattccgca attttatgca
    52381 tatcaaaagt tcgaatttgt gcttctataa tacttttagc atcaaaaagt gtggtatgta
    52441 tggtttgata accattttgt ttaggcaagg ctatataatc cttaaaacgc gaaaccaagg
    52501 gattaaaatg tgtatgtaaa attcccaaag ctaaataaca atcacttact ttttcaacca
    52561 aaattcttac cccaagcaaa tcaagaactt cttcaatacc aatgcctttt ctttgcattt
    52621 taagataaat agaatagcta tgtttaatgc gtttttgaat ttcaaaacta ccttgtctaa
    52681 agccattgct caaaaataaa agttcgattt tggaaataaa ttcatttaaa cctaattgca
    52741 tttcttgatt attggagttg atataattgt caataagctt atactcatct ggcataagat
    52801 atttaaaact aagatcttcc aaataatttt ttatgcttga aataccaagt ctatgggcta
    52861 ttggggcata tacaactaaa gtttcttcgc tgattctttt ttgcttatct tctcttagaa
    52921 tatcaagagt aagcatatta tgcagcctat cgcataactt cacaatcaaa accccaacat
    52981 cttcaatact tgctaaaagc atatttctga aagtcaaggc tgatttagtt aaactttttt
    53041 tagattttga tgaaatgaga ttatcttctc taatttctat aattttagta agccctaaaa
    53101 caagttttaa aacctcagaa ccaaactgct ctctaagttc ttcttcagta cagtttgtat
    53161 cttcgatcac atcatgcaat aaagcagcta aaatattgct tttattttca cttaaaaatc
    53221 caaccagtgt tgctactaaa ataggatgta ccgcataagg ctctccactt tttctaaact
    53281 gcccttcatg gcaaaatata cagtaatcta ccgctttttc aagaatggca tcatggccac
    53341 aaatttcgaa aagcaaagcc ttagcagctt ctaaatcttt acaatttttt acattatcga
    53401 ttaattgttc aagcaataat tcttcatcga ttggtttcaa ctaaaccctc taaagtgatt
    53461 ttattttctg caatttcata taaagctata tctgcaaatt tatttttatt tttatcaaag
    53521 tctaccaaag gggttgctcc gttcgccaat tgttccgctc tttttgctac cactaaagaa
    53581 aggcgatatc tatcattacc cattttttcc aaagcttttg ccgctacttc ttctattctt
    53641 ttatccataa ttttctcctt aattattttt aacgattgaa caaaggctag tatcaccttg
    53701 tatgatttta agtaaattac cctcttcaaa catattacaa accacaatag gaagtttgtt
    53761 atctttagct aaagctatag ctgtatcatc catcacttta atattatctt gcatagcctc
    53821 atcataactt aaagtattta aaaatactgc atcatcaaat tgttttggat ctttatcata
    53881 aactccatta acttttgtag cttttattac catatctgca tcaatttcca cagctcttaa
    53941 aatagctgtt gtatctgtag taaaataagg gtttccagta cctgcggcaa aaaccacaac
    54001 acgacccttt tctaagtgtc tttgtgctct tctcataata taagtttcac aaaatgcttc
    54061 catctgaatg gcgctttgaa ccctaacttc aagtccagag ctttccaagg cttcttgtat
    54121 agcaatagca ttgataaccg tagcaagcat ccccatatga tctccacttg tccttttaat
    54181 caatccaccc ttagcagcac ttactccgcg aataatatta ccaccgccta taactatgcc
    54241 tacttctatt tgatttttta taagttcttt aatctctgaa gctatgaatt ttaaaataga
    54301 attttctata ccaaagccat tttcacccgc taaagcctct cctgaaaatt ttactaaaac
    54361 tctttttctc tcttgcatta tttctcctta tttaacttga aattatattt taaattccat
    54421 taaatttagc taatttaagc taatgagttc caaaggattg atatgaaaat ttttttgagt
    54481 tacttcaaaa gtaagatcat tttttattct acccactacg gcaccttttt taatattctt
    54541 accaacttta atattaggag caatcttatc taaatgtgcg tatattgtat gtatgccatt
    54601 atcatgttca acaataacaa ctcgagctaa catactagta tctttagcaa aaactatttt
    54661 tccatctagc acatttttaa caactgcatc gcttttattg cttcttaaaa ctacattctc
    54721 gttaaaaatt ttaagattgt aaacaggatc aacataattt ccaaattttt gcttcacagt
    54781 aaaagaatcc aatggagcta tggttttttt tcctgtgtaa cgcttgactg aacttccttg
    54841 atagcttgaa cctaattgcc ttatttgttg attatttttt actattttag tatcattttt
    54901 gtttaaattt gcaccttctt tattattaat aatttttaat tgatttaatg tttttctaag
    54961 ctcttcttgc tgagcttgta agtcatcgag tttttttgca tatatggttc gatctgtttt
    55021 ttgtttatta atttcgctaa tttgtttttg ttttaaactt tgaagcttga ctaattgagc
    55081 attgtaatcc ttaagactat cattgatttt cttaatctga gcttgtttat catcaataag
    55141 tctgcttact ccctcataat ctttagaaat tttaaaaatt tcttcattta aaactttgtt
    55201 taaactccct aaaatttcaa aagccacaaa actttcttca ctttcgatat agccttgagg
    55261 aataggtaaa tcataggcaa aatctttagc catcaaagat ataagcttac tttccatatt
    55321 tgatttactt ttaagcaaat cttcattttg gcttgcaagg gtgtttaact cttgattttg
    55381 agccttagca cttgcttcaa gcttagaagt ttgtgaattt aagctttcaa tttgcaaact
    55441 taaatctttc aaactttttt caccatttaa aatatcacta gccaaatctt caagtttttt
    55501 atttagctgt tcttgtatgc gtttattttc ttctaaactt tttgtttttt catttatagc
    55561 gtttgctaaa cttataccaa caaacaaaaa aaaacaaaaa aagataagaa tattttttct
    55621 catcttttaa ccttaaacat aaccgtattt acacacaaca agcaaataaa caaagtagct
    55681 aaaaaaatta aagtcaaatg taaaataaaa ttaataggtg gaaaaataat atctacagcc
    55741 tttaaacttt cttggataat agaaagatca aaaatttggg taaaaaaggc aagtaaaata
    55801 acaaaagcaa taaaacaatc aaccacaacc accttataaa gcataaaaga tctaaaccaa
    55861 aacggagctc caaataaaca cataatttca atacgatcgg tatgttcata aagccaaatt
    55921 ctcatctgtt ttaaaaacaa aacaaaggca agtaaaataa tgataaacaa aaataaccaa
    55981 aaaacaaatt tcatcaaaat aagcaaagag tatatcttat catgggtttt ggaaaaagtt
    56041 tcaaccttac taacacctac aatatttaaa agttgatttt taatcaaatt tagttcattt
    56101 tgatcgggta aagaatttaa ttttaaagta taaaattttg gcagagaatc ttttaaaact
    56161 ttcaaattct tttcagaaac atcatttttc aaacgatcaa ttaaatcctt aggatctaaa
    56221 gattcaagtc cagcaaaaaa tggtactttt gtttttacta cattctgatc aagttcagtt
    56281 ttgctgacaa ctataatatt ataatcttta ttaacaagtt cttcataatg ctttaaagtt
    56341 gcatttgtaa ccaaaataaa ttcaaaagca aacatcataa aaagcaaagg taaaattaaa
    56401 gataaatgtg ttttaaaaaa tttcattcat ttttccattt tctatattaa aacgacgata
    56461 atccactctt aaattactag gaattctatg tgttaccact ataacacaag ttcctaaaag
    56521 ctctctagca gactttaaaa gagtccatat aatatcagaa gaatactcgt ccaaatttcc
    56581 cgttggctca tcgcaaagca aaagctttgg attatgagct aaagccctag ccatagcgac
    56641 gcgttgttgc tcaccaccgc taagttgatt aggcaattta tctgctttaa aagttaaatt
    56701 tacatgcttt aaaagcttag tagcttgatc atggcatact tttttgctat aacctttaat
    56761 cattaaaggc aacataacat ttttttcaac actatattct tgtacaagtt tataatcttg
    56821 aaaaataatc cctattcttt gacgcaattt taaaagttct aaatttccaa ttttattcat
    56881 caaagatcca catacttcaa gcttaccaga aataggttct aaatctccat aaaaagactt
    56941 taaaagcgta ctcttaccac tcccactttt acccgtaata aaaacaaaat catcatcctt
    57001 aaaagcaaaa cttgcttctt taataactag ttcatcataa cctaaagtaa gtttatttgc
    57061 ttggattaaa ttaggcatcc tttttcctta atttcccttt ttaaattttt aaattatgct
    57121 ttatttttgc ttaattttca agaaaaatta tattttaaac tgagctttta aaatttcttt
    57181 taattcattt atcgctttaa tattttcttg aattttaaat ggttctttaa aagcaaaatc
    57241 gatcgtttta tcaagatgca aataacaatg ttcaggctta ttaaaagctc caaaagcaac
    57301 ctttaaaagc aaattctcat cttgtttata gatgctttca aaatgcaaga aaaaatcatc
    57361 tttttttata gtaatatttt taaagttctg ctctattttt ttcaaatcct ctttagaaaa
    57421 ttcaaccgat gagagattaa attcatttaa ctcatagttt ttacactctt ggttaaaatt
    57481 ccacacccaa agatcatata tatttttttc ttgctttttc catctatctt catatttgct
    57541 tgaaatttct aaattttcat tttttctaag actaaatttt ggagcaggaa aagttaaaaa
    57601 ttgttctaga gtaaaattaa aatactcaaa actatctgtt ctaagctcaa aacgaccatt
    57661 ttgggttaaa accctagcac attctttgca aaaatctttc ccaataactc gcctatgagg
    57721 ctttttgtcc caaggaacag ggaaatgtaa aaaaatcttt tcaactgatt ttgattttaa
    57781 tacactcaat aacaatctcg catcactttg gattagcaaa atattattta cattttgtgc
    57841 tttagcaagt ttagccactt gagttaaagc tgggttgtaa atttccaccc ctaaaattaa
    57901 aacatttgga ttttcttttg cttgataaag caaatgtctt cctgatccaa agcctatttc
    57961 tatataaatt ttaccttgaa gtctagataa aagctcatca aaattatcaa cgataaatgg
    58021 tgttttttca attaaagcat tatttttaag tccaaaagct tcattgataa tatcctcaca
    58081 aaaaccttct ttaaagattt ttaaagcctt ttgcaaataa cctattttag aaggttttgt
    58141 atgtttatcg cctttaatca caaaaccatt ttgtgctttt ttaatctgca gaaaaaaact
    58201 ctcttcttga acctttgtat aaataagact aacattatca ttcttagtaa gccaaagaaa
    58261 ttcaacatca tccttactat aaggcagatt tatttctttg atctttttac ttttaaaatt
    58321 tggcactact gagccgcctt aactttgctt gaaggttctg aacgaagtcc agctgaatca
    58381 atagcaataa cttcataact atattccacc cctggtaaag cttttacatc ttttaatcgc
    58441 ttttctttaa tgcctttaaa aactgcattt tgctccccac catagcgtct tatttcatac
    58501 tcaacagctc tagcatcatt atcactccat tctaaattta tcccttcact tgtgctttgg
    58561 gccaaaataa tactaggagc caaagggtta cccaaagttt taccttctac accatctttt
    58621 ggcataggac tttcaagacc atctttatcg accattgtta ctttataata cttgctttta
    58681 cctgctcctt ctactatatc ctcataagaa tttttatcag tctttgccaa aacactaaaa
    58741 ggaaggaaac ttgagctcgt agaataaact ttataataag aaaaatcttc atacgtagga
    58801 gcatcccaag ttaaaatgat tttattagaa ccatctgtac tagcacttaa atgctcaact
    58861 tgaggaggta aagccttgct tgtagaactt acaacttgac ttggctcact ctttatccca
    58921 ttaaaactca cagcaataat tctataactt gaattttcat taggttttaa atcactatcg
    58981 atgtattcag cgtttaaacg attttttact tctgcaattt ttttaaattc tttatcatca
    59041 cctttggttc tttcaataat ataagaatca accctaaaat caggatgcgg acgccaaata
    59101 agtttaatac gattaggcaa attagtcaca gcttgaacaa aaggaacagc ttcaagtctt
    59161 ggagctgtgc tcacttctat aaccttgcta tcttctgaaa tttgtccttg ttcattaaag
    59221 cttttcatca tataacgata cttagtacca ggctctaatt tagtatctac ataatgagtt
    59281 tgaaacttat ctttaatagt acctacaagt ttaaaatcag gattttcatc gctagaacga
    59341 tacagataaa atcctttgat attttcatta tataaaggtt cccattcaaa agcaatgtta
    59401 ctcatatcac taagattttt taaactttca acctttggca agctctcatt tacagcaggc
    59461 tctttgcttg aagctagcga attcatttgc gaaacactac aagcactaag caaaagagtt
    59521 aaaaaactca agtaaaaact caagcgaaat cttttcatca ttctctccta aattaatttg
    59581 ttcaaacata atatttttaa aatcttccat caaaggtgct ttaacaaaaa tttgctcttt
    59641 ggtttttgga tggataaaat acaaaaaata agcatgtagc attatcctgc aatcatactt
    59701 accgttataa ccatacaaac catcacccaa aatatggcga tttaaactag ctaaatgcgc
    59761 tctaatttga tgagttcttc ctgtgaaaag cttagcagcc atcaaagtta agttttcagt
    59821 ttttactaca tttataaaag ctgattttgc gtttttactg aatttatttt ccttatctat
    59881 ggctattttt ttaatagcat tagaaggcga acgcattaaa aatttttcta ctataatttt
    59941 atcttctttt agtggcaaat caattaacgc aagataaatt cttcccatgc ttttatctgc
    60001 aagctgttcg cttaattttt gatgagtgaa gttatttttc gctattagta tagctccgct
    60061 tgtatcttta tctaatctat gaacaagacc agctcttatc tctcctccta aatttgataa
    60121 agtatatttt ttttctatta accaatccac caaagtggca tttttaacgc tacttgctcc
    60181 atgaacgact aaatttgaag gtttatttaa aacaagcaag tcttcatctt cgtataacac
    60241 atcaatatca aaatccactt caaactgagg ttttatctca tcgcaaaact ttaaacttgc
    60301 aatagaaata atatcaccat ttttaagctt aaatgaattt ttatcttgaa ttttatcatt
    60361 aacctgtaca caatcttttt ctataagtaa agcaacttga ttgcgacttt ggtttaattt
    60421 tttagccaaa aatacatcaa gccttgaatt ttcatctact aaaaaagttt gcattttttc
    60481 cttagaggtt ttgataaatt taaaatttta gtttataatt atagctttat attaccaact
    60541 gaaggcaaat tttgtttaga ttagatagaa gaattttaac tcattttgac tatatgcaac
    60601 ccattttatt tttacccata attcttattt catttttctt aatctttgaa gctaatcctt
    60661 ttttagcaga aaaacagttt gtttatgcct gtgtgggatt gtttgctttt atggtttttt
    60721 tcttctttcc cataaggaaa tttatttgga ttattcctgt tgcttattgg attaatattt
    60781 ttttattgct aagcgtagat atttttgggg ttgaaaaatt aggtgctaaa agatggcttg
    60841 aaattccttt tactcacttt actatacaac cttctgaaat ttttaaacct agttttattt
    60901 taatgcttgc ctatcttatt tatcaaaatc ctcctccaaa aaatggatac aaacttaaac
    60961 aattcatcaa acttagcttt tacatcatct tgcctttttt gctaattgca aaagaacctg
    61021 atttaggaag tgctatggtt ttactacttg ttggttttgg agtgcttttt atcatgggag
    61081 ttcattataa aatttggtta agtattgtta tagctataag tgttagctct cctattattt
    61141 atacacatct tttaaaaccc taccaaaagc aaagaattca tgattttatt tcagaaaaac
    61201 caagttatca agtagcccaa tcaatgatag ctattggaaa tggtggttta accggaaaat
    61261 ctcaagatga agctacgcaa actcatttta aatttttacc tatttcaact agtgatttta
    61321 ttttcgctta catgatagaa agatttggat ttattggggg attgacatta attatatttt
    61381 atattttact tatttttcat ctacttagtt taaattataa acttaaagat gattattttg
    61441 ctagagttgc tattaattgt gttgcattat ttatttttat ttatgcggca gtaaatattt
    61501 caatgactat aggttttgca ccagtagttg ggatcccttt gccttttttt agttatggtg
    61561 gaagttcttt tactattttt atgatttttt ttggaatttt acagcattta atcactttta
    61621 gatatttttg gacggatata aaggctaaat aaaatatttt taagcattaa taagatataa
    61681 ttttatcttt taattcaact taggcggatt tatagctcag ttggttagag caaccggctc
    61741 ataaccggtt ggtcgcaggt tcgagtcctg ctaaatccac cattctacat ataagctata
    61801 gactctttct ttaaaaaata acttttagtt ctttaaatat ttcaatctta tataaaaaaa
    61861 gtatgtgatg tgattttttg aaagataaag tggtggttag aggcagaatc gaactgccga
    61921 cacgca
//
LOCUS       DARGEY010000003        48932 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.003, whole genome shotgun sequence.
ACCESSION   DARGEY010000003 DARGEY010000000
VERSION     DARGEY010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 48932)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 48932)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..48932
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.003"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(19..1317)
                     /locus_tag="SF008_000160"
     CDS             complement(19..1317)
                     /locus_tag="SF008_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002930795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HEG8232473.1"
                     /translation="MKLKLNFLPYFSFIPKKLNTNSIIFKIIKVFFIAILLSNSIYLS
                     FFENIFTQTISPFLAIWGLVLLLKSKTSKQYFWIGFFVGILWFWWIGLSSIYFNLNYL
                     VPIIPIIIGFIYGLLFRLCYLLKFDFLRLCGIFCISFIHPLGFDWFNWGIFTVYGFFD
                     PSYRGIICIFLIAYFIYEGYISRYYKIAIVLILFFSGFQYNEKQAQTLNLNYKLINTN
                     ISQDQKFLQENLKSNSDILIQDILQAINEKKELVILPETAFAFDLKNTKYELMLKELS
                     YKITIITGAFHVEKEHTYNSTYIFKKGNVYILNKHFLVPFGEEIPFFKDLTKKYFLKN
                     IEEFSKGPIQSKYKLDNQIITNAICYEATKEQNYQNSQIIIALSNNAWFNNSSEYKLQ
                     QLLMKFYASKYGVSVYHATNGKENIVILPKKLLSKEMIKK"
     gene            1290..1562
                     /gene="yajC"
                     /locus_tag="SF008_000161"
     CDS             1290..1562
                     /gene="yajC"
                     /locus_tag="SF008_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEG8232474.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            1555..3135
                     /gene="secD"
                     /locus_tag="SF008_000162"
     CDS             1555..3135
                     /gene="secD"
                     /locus_tag="SF008_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEG8232475.1"
                     /translation="MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASAFIVIFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKSNNTRFWFGYRRR"
     gene            3135..4106
                     /gene="secF"
                     /locus_tag="SF008_000163"
     CDS             3135..4106
                     /gene="secF"
                     /locus_tag="SF008_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HEG8232476.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILENQGTFQNLSVTEFGSNEEVIIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            4116..6545
                     /locus_tag="SF008_000164"
     CDS             4116..6545
                     /locus_tag="SF008_000164"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEG8232477.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDALARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLKDLEELKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDVLNKIKVIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYMQKLGKLINSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQSCGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDEKSVKYWMSVDQYIGGIEHAILHLLYARFFQKALRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEVFVKDTLNLAVSINGKKRAEFEISSSASKEEILAFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            6542..7054
                     /locus_tag="SF008_000165"
     CDS             6542..7054
                     /locus_tag="SF008_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG8232478.1"
                     /translation="MKKILIFCIGLFLGACGYIPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMVISKLGRKLALKHEADDVINVKMNNLEFIPLAYDKNGYVISYKAK
                     LNLDFNVVFKDGSSQAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIA
                     IKGQKRDSKY"
     gene            7038..8435
                     /locus_tag="SF008_000166"
     CDS             7038..8435
                     /locus_tag="SF008_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232479.1"
                     /translation="MIPNTNEIAKQTLIALKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTIRSLEELISFLISVLNRQSGKQFSEFFDFLYTIS
                     KTLQISKDKKIRDLAKVTSIRISKTMDSESIYLLTKKWKELERNYDENDLEEQARKYG
                     ISKYDDYDSVIKKLLVKLEERSYEHFSELLCLGLNPSLVEDLKIQGFIQNLTQKPFVI
                     GEENFKNELMEFINHRIMVDNMYVQKNLNFFNDNLKKIYELLVLLNKSNEKNMDFINT
                     LKPDENGEVKLSFEDLKLKFKQLGEKITSLNNQIEFTQSLEEREAWSVLKELDKMDEN
                     FNKYKVNYSLALFSIVNYRFIMEKYGMGSLNEIFVRFKKILKDSCSEFDELWMIDEKS
                     YLIVSPGKSKDEITQLVNTNLKTIENFRFIYKQDIITPKIHVAYLDKQSKPSINILDE
                     LIKQIAAVNEQHNES"
     gene            8401..9585
                     /locus_tag="SF008_000167"
     CDS             8401..9585
                     /locus_tag="SF008_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEG8232480.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENLNYKIGHYTSPHIFSFNERFYLDGKIANDEELEQ
                     AHIRLEEIFKQDLQKLSYFEYATFLAMILFQKCDFIVLEAGVGGEYDATSIFERRMSI
                     FTRIGFDHIQILGNSLEDIARTKLKVMAPIALISDEQEQNVLNLAKKIAFLKKANLQV
                     SSLNPFLKEKFEIYCKKFVLPYFLKHNLKLALKACEILTSQEKTLEALKKLQELNLQG
                     RCQEISPNFFVDVGHNPMAAKAMLDKFQGEKINLIYNAYLDKDIFQILNTLKPIIDTI
                     QIYKYKSAERKLADDEIYSIASKLGMQCKEFVKLEENKKNLVFGSFMLVENFLKEWCG
                     KK"
     gene            9572..10474
                     /locus_tag="SF008_000168"
     CDS             9572..10474
                     /locus_tag="SF008_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG8232481.1"
                     /translation="MVKNKFTITITDINGSRHFYLNQIIKKIVFYIIAFIVLFLVFSG
                     FYIKYLDSKLSDISEKREELLKKSKELELSNSQMQKSIEEKTQQYAAIEDKIASFEEA
                     LGLEAENNLTISARLDNLQLTNEQQLGILGQIPNGWPIENKGITGNFGWREHPLLKRR
                     EFHPGIDLRAEIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMMRKEV
                     VKAGQFVNKGQLIGYSGNTGLSTGPHLHYEVRFINKTLEPLYFLNLQRKNMNDFFNQE
                     RRVPWQSLIKAVSAQHPALAQKQQ"
     gene            10411..10806
                     /locus_tag="SF008_000169"
     CDS             10411..10806
                     /locus_tag="SF008_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HEG8232482.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            10806..13742
                     /locus_tag="SF008_000170"
     CDS             10806..13742
                     /locus_tag="SF008_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEG8232483.1"
                     /translation="MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHI
                     DKKQNFDLKCFEDEISRLGYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEE
                     IESIRYFDLQSQKSIPNELEHFEICPFLKYFDKENYEIFKDKLEDFQSDALIHDINSL
                     GFWCIDDFFDYLELDFLACEKFDINEYEKDISFVNAKILPQAKKFKELQSSYNKDFFE
                     FHKNKKITLLAKNEALFKALELEDTQNIHFVKSDLRLNLISPEELIISLNQKEKQKTR
                     KKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSDKLLLPVEN
                     LYLIDKYLGVSGSIPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMAAKRSLVQAKKI
                     TVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA
                     IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNL
                     KENKACVVVGTHALLSVECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPI
                     PRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDDALLKEAIARELRRGGQIFYIHN
                     HIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVESGI
                     DLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL
                     ESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEV
                     DQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEVYEIEGEIEDRFGKI
                     DIYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAKSKDDDDILEAIL
                     THLRKA"
     gene            13744..14505
                     /locus_tag="SF008_000171"
     CDS             13744..14505
                     /locus_tag="SF008_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8232484.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPIALKDLVGMESQKKALYE
                     NTLNFIQDKGANHALLWGSKGTGKSSLIKAIFNEFKEQGLRLVELNKEDLFALADIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     ITDNLDTQITHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLHAKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            14502..15188
                     /locus_tag="SF008_000172"
     CDS             14502..15188
                     /locus_tag="SF008_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HEG8232485.1"
                     /translation="MTGAQIFTKLLNLDLNYHDFDWLENQGLSEFELLISVVLTQNTN
                     WKNVLKALENLKKENIASLEQINTLSNLELATLIKPSGFYNTKTKRLKGLVESIINTY
                     ENLENFKTNASREWLLNIKGLGFESVDSILNYLCKREILVVDNYSLRLAFYLGYEFEN
                     YEELREFFQSDIESEQENLYKILGKKCELYELYQIFHALIVAFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            15185..15997
                     /gene="thiD"
                     /locus_tag="SF008_000173"
     CDS             15185..15997
                     /gene="thiD"
                     /locus_tag="SF008_000173"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEG8232486.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPTQSVDEQMLAVFEDIVPKATKIGMIGSCELMSCVAKNLSEF
                     KPQNVVIDPVMFAKNGHALMPQENCDFFKQTIIKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGAKAVLLKGGHSEANANDVLYNGKEIYILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKDLFHAVSEAKEYVRNAIYYSLNLGKGCGPTNHFFKFLDEK"
     gene            15987..16619
                     /gene="thiE"
                     /locus_tag="SF008_000174"
     CDS             15987..16619
                     /gene="thiE"
                     /locus_tag="SF008_000174"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEG8232487.1"
                     /translation="MKNKLDLSLYLVATKGNKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKSYKIPFLINDRVDIALALDADGVHLGQEDLEAKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGVNYLGCGAIKATPTKESSLLSLELLSQICDKSPIGVVA
                     IGGIDKEALVELKGINLSGVAVVRAIMDAKDAFLAAKELKRKIYENLSLK"
     gene            16597..17226
                     /locus_tag="SF008_000175"
     CDS             16597..17226
                     /locus_tag="SF008_000175"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEG8232488.1"
                     /translation="MKIYLLNETPFEGVENLILNEIVFYDFSVDLSLYDALICTSKNA
                     LKALQHAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLEFKEELKMQ
                     KCLYLRAKNIVSTLNLDLKNVGVDLDEMIVYENVFKKGDKKLIYPAIFIFTSPLSVEN
                     FLKFYSLKEEDKVVVIGQSTAKKLLNFKNLYICENQSLLDCVKLAKTLV"
     gene            complement(17223..17675)
                     /locus_tag="SF008_000176"
     CDS             complement(17223..17675)
                     /locus_tag="SF008_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232489.1"
                     /translation="MKKAYVLIWTIFLILLISLWMSLTLNISSYTPKIIQDSYYYLQA
                     QILSHNATQFSKYFLYQARQENKECLDNIYFNYTKALIKIKYFYPIAQCVNFKFSNFN
                     PDANLNKDGVIIAHISIALNRDKNVNDEILLTKSIIIYPKENFWNLKN"
     gene            complement(17672..18334)
                     /locus_tag="SF008_000177"
     CDS             complement(17672..18334)
                     /locus_tag="SF008_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232490.1"
                     /translation="MSKAFTLFELIISLILFTFITNLLSKPLMDFYHLNFTALHTNNL
                     ITQAHLNLLKIEKLIQNCINITFSQNTLKCLLKDELISLKDNKLYLINSALILENNHT
                     LYSPHSDFKTQLQNRKDLYNDNEHISYAYKINKIEKISILENGISANFTGSFIPLQAQ
                     LVIKLQNEELIYEIKPKFNEQLSQQGLISKNISSFNLQNNKLKICLKRQTKYCLKKRI
                     LL"
     gene            complement(18331..18633)
                     /locus_tag="SF008_000178"
     CDS             complement(18331..18633)
                     /locus_tag="SF008_000178"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEG8232491.1"
                     /translation="MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERL
                     YKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDGIFQFQKLYFQDQNYSVYFKE"
     gene            complement(18630..19361)
                     /locus_tag="SF008_000179"
     CDS             complement(18630..19361)
                     /locus_tag="SF008_000179"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEG8232492.1"
                     /translation="MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTI
                     KGIKILEQKGIRGSFFEAINASSAK"
     gene            complement(19361..19750)
                     /gene="fliW"
                     /locus_tag="SF008_000180"
     CDS             complement(19361..19750)
                     /gene="fliW"
                     /locus_tag="SF008_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HEG8232493.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
     gene            19911..20558
                     /locus_tag="SF008_000181"
     CDS             19911..20558
                     /locus_tag="SF008_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HEG8232494.1"
                     /translation="MKKGIFLLVFLSIFFSACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHVADPLLETTLIILAQAHMDEEEYKLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFN
                     LAVFYLNSTIENLYQRIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
     gene            20575..22950
                     /gene="lon"
                     /locus_tag="SF008_000182"
     CDS             20575..22950
                     /gene="lon"
                     /locus_tag="SF008_000182"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HEG8232495.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDLSNMKALDL
                     AIKNDSMLFVAPSKLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFVLTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDVPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLRDRMEFIELSSYTPSEKF
                     HIMKKYLIPDELKKHGLKSNELFIDDETIELIISDYTRESGVRNLRRKVAELCRKSAK
                     KLLLENIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTSVGGDVLKVEAV
                     KIKGKGELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIIIDPKVNVYDSYNI
                     HIHVPDGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLKGKVLPIGGLKEK
                     LIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVLEYTLV"
     gene            complement(23010..23270)
                     /gene="rpsR"
                     /locus_tag="SF008_000183"
     CDS             complement(23010..23270)
                     /gene="rpsR"
                     /locus_tag="SF008_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEG8232496.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(23281..23829)
                     /locus_tag="SF008_000184"
     CDS             complement(23281..23829)
                     /locus_tag="SF008_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEG8232497.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKR
                     EETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPTPQRNQNPQ
                     HEEKLKEIDIDAYDSDDTNLPF"
     gene            complement(23838..24215)
                     /locus_tag="SF008_000185"
     CDS             complement(23838..24215)
                     /locus_tag="SF008_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEG8232498.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLTKNSAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            complement(24302..25168)
                     /locus_tag="SF008_000186"
     CDS             complement(24302..25168)
                     /locus_tag="SF008_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HEG8232499.1"
                     /translation="MNKKFSYPIPNFTDRRKSIIFWRYLRFQARKILYFPQVRLLEKT
                     LNKEKNKHLKDFFSQRPYACYNATRRFCDKSFKANERVKTLIYDVDKGLACFKFLPEE
                     QIIFSFDEDFELFLGYNYNVCEEGFWAFSLKFKKYTILQCNFCFTLENNLLLSCIQGH
                     KYKDFNILEINKILTKKCHGLRPVALLIECSKMLCEILKLQTTLGVHEKNQIRSQKGK
                     EKGYFVDYQKIWLENGGELIKINKHKYYKLHHSQKNLEEIPSQKRSMYKKRFAMLEEI
                     KTNLDKTLSIQD"
     gene            complement(25161..26267)
                     /gene="rseP"
                     /locus_tag="SF008_000187"
     CDS             complement(25161..26267)
                     /gene="rseP"
                     /locus_tag="SF008_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEG8232500.1"
                     /translation="MRSLLFLIVILILGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTNYRLSTLPLGGYVKLKGQDDMRPGFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLNKLAPQIGNIASNSAAQEIGLQ
                     KNDTILEINGIRIQTFDEISKHLSLDPLKILINREGKNLEFILTPKIGQGYNDFGQIV
                     EKPQLGVSPNGTSTLVKHQGLESFKYAAQESFQASTLIIKGIVKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKV
                     PQRTFEYLSYTGMAILLSLMLFATYNDISRIIGE"
     gene            complement(26264..26800)
                     /gene="pgsA"
                     /locus_tag="SF008_000188"
     CDS             complement(26264..26800)
                     /gene="pgsA"
                     /locus_tag="SF008_000188"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEG8232501.1"
                     /translation="MNLPNILAIFRMVLAPLLFFLLIHHFENIHQSWINYFAALTFSL
                     AALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAFLGLLLTGKANEWVIYIILVR
                     EFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFLIMEWIGGEILLYIALILTLY
                     SGFEYIYTYIKAQKKGEK"
     gene            complement(26926..27531)
                     /locus_tag="SF008_000189"
     CDS             complement(26926..27531)
                     /locus_tag="SF008_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG8232502.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLKKEDLNSILEITRLSPSSLGLE
                     PWKFIVMQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSETE
                     IQKRLDAYMPFLKSLNQEQKISYAREQAHIALASILYSANALNIASCTIGGFDKEKLD
                     SYLSLNIQKERSSLVVALGYCNDEKNPQKNRFSFDEVVKFI"
     gene            complement(27531..28151)
                     /locus_tag="SF008_000190"
     CDS             complement(27531..28151)
                     /locus_tag="SF008_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG8232503.1"
                     /translation="MNFKELISKRRACKLFNDKKINEKDLHFILESGVLAPSSHGFEP
                     WKFVVLEQKEHNLKLSTLCYNQQNVASASHNIIFLARKDLQSKDEFAQKQVRRFSGSS
                     EENFQKILEIYTHKTNAMNDNELYHYAQLQCYLAMMQMSLAAMSLGIDSCMIGGFEKA
                     KVDDFLNLTYPFETAVILSLGYKAHEPKYSTQRLNFNEVVEFYKEK"
     gene            complement(28215..28640)
                     /locus_tag="SF008_000191"
     CDS             complement(28215..28640)
                     /locus_tag="SF008_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8232504.1"
                     /translation="MKEIKLKEDLEKIYPLIKQLRNNLSLKDFLDKIQLATQTQHYKL
                     FAYENEGSYKAACGVMPFNVLYHNHCLYICDFVVDEALRGKGIGQAFLKKIQIWAKDQ
                     GYEELELSSSFFRTQAHEFYIQKMGFEKSGFVFKKNIKL"
     gene            complement(28652..29740)
                     /locus_tag="SF008_000192"
     CDS             complement(28652..29740)
                     /locus_tag="SF008_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HEG8232505.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDK
                     DLPFLLENLLNQYDFITLFTSSLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
                     SIKSTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIVSYSNRIKHEWLGISESVLENNGEYSE
                     RCVYFMLKGIFKTANPDFALAVSGVVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
     gene            29839..32592
                     /gene="ileS"
                     /locus_tag="SF008_000193"
     CDS             29839..32592
                     /gene="ileS"
                     /locus_tag="SF008_000193"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEG8232506.1"
                     /translation="MDYKETLLLPSTSFAMRANLAELEPQRFKKWFEQNYAYEKMKEN
                     RKNAKKSFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQAEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALLKSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEHVLMDGGSGLVHTAPGHGEDDY
                     YACLKYGIEVLMPVDDSGCYDETLRAKGLLPSHLLEEFIGLHIFKANEKILELLGEKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAKEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDEFFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYNAENLEKVYDILDVWFDSGSTFNAVLNSGLYDTGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINESAPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLKV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENAQRRKSAQVAMALIAKELLNLLAPNLSYSVDEALEHANVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKDEETPCLRCEEVLKG
                     IQC"
     gene            32586..32696
                     /locus_tag="SF008_000194"
     CDS             32586..32696
                     /locus_tag="SF008_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232507.1"
                     /translation="MLENPIPNSIIITTIAVVLAFSALAVFLIKKTKENK"
     gene            32693..34054
                     /gene="gatA"
                     /locus_tag="SF008_000195"
     CDS             32693..34054
                     /gene="gatA"
                     /locus_tag="SF008_000195"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEG8232508.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKIGAYIEQFLDKDL
                     SVSGEGVPVAIKDNISVKGWELTSASKILQGYIAPYDASVIVNLKANGFSPFGRCNMD
                     EFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTAPNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASANLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKVKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEGLNISAQLICKAYDEQTLLDGALSLEQM
                     IKH"
     gene            34064..35521
                     /gene="guaB"
                     /locus_tag="SF008_000196"
     CDS             34064..35521
                     /gene="guaB"
                     /locus_tag="SF008_000196"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEG8232509.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESDFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDNFGRLRV
                     GAAIGVGQMDRVNALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            35518..35691
                     /gene="xseB"
                     /locus_tag="SF008_000197"
     CDS             35518..35691
                     /gene="xseB"
                     /locus_tag="SF008_000197"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEG8232510.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            35684..36466
                     /locus_tag="SF008_000198"
     CDS             35684..36466
                     /locus_tag="SF008_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEG8232511.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGVNLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKLKCALLFGFETHFDIFWQQIM
                     AKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKIIKEFKN"
     gene            36587..37885
                     /locus_tag="SF008_000199"
     CDS             36587..37885
                     /locus_tag="SF008_000199"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEG8232512.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITKELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLGDASVIIGAILKEFGSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYGNEVSKLHHAYAEFLDTAKIRVINAEDEFLKNYKNE
                     STKLYPSKDIKNCTMRIENFKPFTSFELKNLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQQYAKLGGYK
                     KITAIFEPHRYTRLAANLKEFAKAFEGVDELIILPVYTAGEEPIGLDLEAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
     gene            37878..38228
                     /locus_tag="SF008_000200"
     CDS             37878..38228
                     /locus_tag="SF008_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232513.1"
                     /translation="MSRFFLYFLIILILALITFALREKLGKKTKPFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            38218..40428
                     /locus_tag="SF008_000201"
     CDS             38218..40428
                     /locus_tag="SF008_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HEG8232514.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSNLHFKR
                     IHELCEVEFPTIPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     DSWLQKIEFVSGALELCLNFDEKGELKESLDERLVNLNAALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSNGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLVKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFVL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKASESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSRKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKFHKAIEEAKKTIQLK
                     DIKDKQRSLNKANELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPTSKISPKTSISVAKPTNLSVSLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLVYHGIGAGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVRL"
     gene            40437..44277
                     /locus_tag="SF008_000202"
                     /pseudo
     CDS             40437..44277
                     /locus_tag="SF008_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517037.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
     gene            44320..45021
                     /locus_tag="SF008_000203"
     CDS             44320..45021
                     /locus_tag="SF008_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HEG8232515.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     VHLHGFLPELRCLKCEGIFNIGYEKFTDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLHQTSLFISIGTSGAVLPVGQYASMCEKSILNIYEKDVNLERYFDKIYIEDIISAID
                     KIALDIENFMKDGNV"
     gene            45014..45613
                     /locus_tag="SF008_000204"
     CDS             45014..45613
                     /locus_tag="SF008_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HEG8232516.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLDNVIFMRFLAIFGFCFLTYMAYLMLRKKKESLNLEHKEF
                     KESLLKSYIKGAFLNGSNPFVIGFWLSAASVVLSSDHAYLMTLGLVVAILFWVSALAF
                     VVARYSYVFSAKVVFIINIISAIIIEYFALNLLYKTFLG"
     gene            45617..46714
                     /gene="dapE"
                     /locus_tag="SF008_000205"
     CDS             45617..46714
                     /gene="dapE"
                     /locus_tag="SF008_000205"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HEG8232517.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFKDEGEHLAFGGHVDVVPAGEGWSSDAFVPMEKEGFIYARGAQDMKSGVA
                     AFVDAAKNVDFKGARLSLILTSDEEGEAIYGTKAVLEWMQERDMLPDYAVVAEPTCVK
                     KIGDSIKIGRRGSINGKLLIRGKQGHVAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            46724..48787
                     /locus_tag="SF008_000206"
     CDS             46724..48787
                     /locus_tag="SF008_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEG8232518.1"
                     /translation="MIEEILKDSDYKLDLFSKKAIAELETKIIAKTNKNNQIIYYTNC
                     LIRDKEIKLTPEEIVRQLYIDKLLNEYNYPKDMIKIEFGVHFGREVKRADIVIIDKIQ
                     ITVPYIIIEVKKPKLKDSKEQLKSYCNATGATMAVWCNGKEISYYHRKDPNYFESIPN
                     IPASNQTLPDLLKVKITFDDLIKEDILKSQKRSLKNLVTEMEDEVLANAGVDVFEECF
                     KLIFIKLFDELEGARDRTKSLEFRNYGESDSELKQKIEKLFDKAKKKWEGVFNNDEKI
                     KLSPSHLSVCVSSLQNVKLFNSNLEVIDDAFEYLVNKSSKGEKGQYFTPRYVIDMCVK
                     MLNPKKDESMIDTASGSCGFPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVK
                     EKVFGIDFDEKSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEG
                     FKRLKNLRVTKNQNRDFNFDVLMANPPFAGDIKESRILARYELGKKENGKPQSKVGRD
                     ILFIERNLDMLKPGGRMAIVLPQGRFNNSSDKYIREFIAQKARILAVVGLHGNVFKPH
                     TGTKTSVLFLQKWDDKLCPKCEDYNIFFATMNEPSKDNSGEKIYYPLLDSHDHLVVKH
                     DLFHPHLEGDEPIKQKDESQEEFDKRIQEYRLNVEKYKDLQKDGIAEAFIEFAKAENL
                     SFWKE"
     gene            48792..>48932
                     /locus_tag="SF008_000207"
     CDS             48792..>48932
                     /locus_tag="SF008_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlfA"
                     /protein_id="HEG8232519.1"
                     /translation="MDNMKEFKIFCDESNHLFYKDNPTLCSKVMVLGALKVPSSEIIK
                     INK"
BASE COUNT        17792 a         6027 c         8713 g        16400 t
ORIGIN      
        1 aaaattaaaa ttttaatatt atttttttat catttctttg cttaaaagct ttttagggag
       61 tataactata ttctctttgc catttgtagc atgataaaca ctaaccccat atttacttgc
      121 ataaaatttc attaagagtt gctggagttt gtattcgcta ctattattaa accaagcatt
      181 gttgcttagg gctataataa tttgtgaatt ttgatagttt tgttctttgg tagcttcata
      241 acaaattgca tttgtgataa tttgattatc taatttatat ttgctttgta taggaccttt
      301 ggaaaattct tcaatatttt tgagaaaata tttttttgtt aagtctttaa aaaatggaat
      361 ttcttcacca aagggaacta aaaaatgctt atttaaaata tagacattgc cttttttaaa
      421 gatataagta ctattgtaag tatgctcttt ttcaacatga aatgctcctg taataatggt
      481 gattttataa gataattctt taagcataag ctcatatttg gtatttttta aatcaaaagc
      541 aaaagcggtt tcaggcaaga ttacaagttc ttttttttca tttatagctt gaagtatatc
      601 ttgaattaag atatcagaat ttgattttaa attttcttgt aaaaattttt gatcttgaga
      661 gatattagta ttgatgagtt tgtagtttaa attaagagtt tgagcttgtt tttcattata
      721 ttgaaatcca ctaaagaata aaataagaac aattgctatt ttataatatc ttgatatata
      781 accctcatag atgaaatatg ctattaaaaa tatgcaaata atgccacgat aacttgggtc
      841 aaaaaaacca taaactgtaa aaatccccca attaaaccaa tcaaatccta aaggatggat
      901 aaaacttatg caaaaaattc cacaaagcct taaaaaatca aattttaata aataacataa
      961 tctaaaaagt aacccataaa taaaaccaat gataattggt ataattggta ctaaatagtt
     1021 tagattaaaa taaattgaag ataaaccaat ccaccaaaac caaagaatcc ctacaaaaaa
     1081 acctatccaa aaatattgtt tagaagtttt actttttaga agtaaaacta acccccaaat
     1141 agctaaaaat ggactaatgg tttgtgtaaa aatattttca aaaaatgata gataaataga
     1201 atttgaaagt aaaattgcaa taaaaaagac ttttattatt ttaaaaatga tagaattagt
     1261 gtttaatttt tttggaataa aggaaaaata tggcagaaaa ttcaatttta acttcattgt
     1321 tacctcttgt agtgttattt gcaatttttt atttcttggt gatcagaccg caacaaaaac
     1381 aagcaaaagc acataaacaa atgcttgagt ctttgcaaaa aggagataaa atcatcacta
     1441 atggcggact tatttgtgaa gtcgtaaaac cagaggagga ttttatcaaa gttaagctta
     1501 atgaagacaa tgttactgca aaaatttcaa gagaatttat agcaaagaaa attgatgcgt
     1561 aattctaaaa tcaattatcg cttgattatt tttatagcgg tatttatttt tggagtggct
     1621 ttttcactcc cttctttttt gcagtcagaa cgtggtgcga agattaattt agggcttgat
     1681 ttgcaaggtg ggctttatat gctcttaggt gtagataatg aagaagctgt aaaatctaaa
     1741 ataaaatcaa ttgcatcttc attgagttat tcttttaata aagaaaatat tttaaatgat
     1801 ggcttaaata cccatgatga tattttagaa tttactttgc ttgataatgc agatattgca
     1861 aaagttgaaa atttgcttaa agaaataaaa ggaattaata tacaaagtga aaatatgcac
     1921 tataaaattt cttttacctc agaagaagta aaaaatatag aaaattttgc acttttgcaa
     1981 gcagttgaaa ccataagaaa taggcttgat caatttggtt tagcagagcc aacagttgct
     2041 aaacaaggtg atgataagat tttggttgaa cttgcaggga ttaaaaccaa agaagatgaa
     2101 ctaagagcaa aagaacgcat cacaaaagca gcgcatttgc aacttatgga agttgatgat
     2161 tctaaaatgg gtcaagcttc tacaatgagc gatgctgagg ctgcgagtta tggactgatt
     2221 ttagtgcctg attctagaaa tccaaattta aaatatacct taaaaagtat acctatttta
     2281 gatggatcta tgcttactga tgctagagta ggacttagcg ataagagtaa ttatcctgtg
     2341 attaatttta ctttaaatgc tgagggttct aaaaaatttg ctgattatac aggagcaaat
     2401 gttggaaagc gtcttgctat tgtacttgat aataaagtat attctgctcc atctatcaat
     2461 gaacgcatag gcggaggtag tgggcaaatc agtggagctt ttactcaaga agaagcacgc
     2521 gatgtggcgg tagctttaag aagtggagct ttgcttgcgc ctgtaaaatt acttgaacaa
     2581 agaagcatag gaccatcttt aggtgctgat agtattaaaa tgagtatgat agccttaatt
     2641 ggtgcatcgg cttttattgt aatatttatg atgatgtatt acggtgtggc aggaattttt
     2701 gcaaatattg caatgttagt taatgttttg gtagtagtgg ctgttatggc tatgtttgga
     2761 gcaactttaa ctttaccagg gatggcagga cttgttttaa ctgtgggtat ggcagtagat
     2821 gcaaatgtga ttatcaatga gcgcatacga gaactcttgc gagatggagt aaatataaga
     2881 gctagtatag aacaaggtta taaaaatgct atgagtgcga ttatagattc aaatatcact
     2941 tctttagtta cttcggtagc gctttatgcc tatggaacag gagcagttaa aggttttgct
     3001 gtgactttgg gaattggtat tgttgtttct atgattacag ctattttagg aactcacgga
     3061 atgtttgatt attttatgca acgcatagaa aaaagtaata atacaagatt ttggtttggt
     3121 tacaggagaa gataatgcag ttttttagcg aaaagaaaat ttatgatttt atgagaatgc
     3181 gttttgctgc tatttctctt tcttttattt tgttttttgg ttctatttat ttgctttggg
     3241 ataggggttt gcaatatggc attgatttta gcggaggaac tttagttcag cttaaatatg
     3301 aaaatgcagc tcctataaca caaattcgag aaattttaga aaatcaagga acttttcaaa
     3361 atttatctgt aactgaattt ggaagcaatg aagaagtaat catacgcttt ttaggaagta
     3421 atgataatgt aagcaatgat ataggtgagc atataagcac tcttttaaag gatacgggaa
     3481 aatttgaagt gcgtcgtgct gatgtggtag gtccaaaagt aggtgatgaa cttagaaata
     3541 aaggacttat ggctatagct gtatctttga tagcaatttt aatttatata gcgttgcgtt
     3601 ttgagtggcg ttttgctctt gcggctataa tcagtgaaat tcatgatgtt gtgattactt
     3661 taggggcaat ttctttattt aaaattgatg tcaatctaga tactttggct gctgttttaa
     3721 ctgtgcttgg gtactctttg aatgatacaa ttattatttt tgatagaatc agagaaggta
     3781 ttaaaacaag taaaaaaacc gaacttgcac ctattatcaa tgaaagtgtt tcagcaactt
     3841 tgtcaagaac ggttttaact tcagggttaa ctttagcaac tgttgtgata ctttatttct
     3901 ttggcgggga aatgatacaa ggattttctt tggctttaat tgtaggtatt atagcgggaa
     3961 ctttaagctc tatttttgtt gcaagtccga cattattatg gtttaaattt agtgtgcttg
     4021 agtttagaaa taaagaaatt gaaaaagcaa aaagaaaaca agataaagaa cgcaatcgtg
     4081 caatgtatga aaaaggaact gtgtaaggag aatttatggc ttatgaagca agtttaatag
     4141 aaaaaaaatg gcaaaaaatt tgggatgaaa atgaatattt tgagccaaaa gatgacttaa
     4201 atttgcctaa aaaatatatt ttatcgatgt ttccttatcc tagcggacgc attcacatgg
     4261 ggcatgtaag aaattatact ataggtgatg ctttagcaag atattatcgc aagataggtt
     4321 ttaatgtttt acatcctata ggttttgata gttttggcat gcctgctgaa aatgcagcta
     4381 ttaaacataa aattcatcct aagtcatgga cttatgaaaa tatagcttat atgaaaaaag
     4441 aacttttttc tttaggtttt tctttttcta aaaaaagaat gcttgctact tcagatccac
     4501 tttatacaaa atttgagcaa gaatttttta ttaagatgtt tgaaaaaggt ttgatttaca
     4561 ctaaagaagc aaatgtaaat tggtgtgaac aagatcaaac ggttttggct aatgagcaag
     4621 ttgaagacgg aaaatgttgg cgttgtggtc atgaagtggt gcagaaaaaa atgccaggtt
     4681 attatgtaaa aatcactgct tatgctgagg aacttttaaa agatttagaa gaattaaaag
     4741 ataaatggcc taatcaagtt ttaactatgc aagaaaattg gattggtaaa agcgaaggtt
     4801 tggaattttc tttaaattta gacgaagaaa gtaagcaaaa aaccaaagaa agttctttag
     4861 aagtttttac tacaagagca gatacaattt atggagtttc gtatatcgct ttagctccag
     4921 aacataagat tgttcaaaat ttgctttcac aaaatttatt aaatcaagat gtattaaata
     4981 aaatcaaagt tattcaaaat caaagcccaa gagaaagaca aagttctgaa aaagaaggtt
     5041 attttttagg aatttatgcc attcatcctt taagcggaga aaaaattcct ttatgggtgg
     5101 ctaattttgt cttggctgat tatggtagtg gagcggttat ggctgttcca gctcatgatg
     5161 aaagagattt tgaatttgca acaaaatata atcttgccat caaacaagtt attcaaactc
     5221 aagaaaattt accttatatg caaaaattag gaaaattaat taatagtcaa gaatttgata
     5281 atcttgattg taatgaagca agattaaaaa tcatttctca gtttgaagct aaaaatatag
     5341 gaaaaagggt tgtaaatttt aaaattcgtg attggggtgt ttcgcgtcaa agatattggg
     5401 gtgcgcctat tcctatgatt aaatgtcaaa gttgtggtat agtacctcaa aaactagaaa
     5461 atttacctat tactctgccc gaagatgtgc aaattacagg tgagggtaat ccacttgata
     5521 aacatccaac ttggaaaaat tgtatctgtc caaaatgtgg taaagaggct caaaaagaaa
     5581 gcgatacttt agatactttt tttgaaagtt cttggtattt tgcacgtttt gcaagtgatg
     5641 agaaaacttg gcaggaaaaa gctttagatg aaaaaagtgt aaagtattgg atgagtgtgg
     5701 atcaatatat aggtggtatt gaacatgcaa tcttgcattt actttatgcg agatttttcc
     5761 aaaaagcttt aagagatttg ggttatttaa cacaaaatga accttttgat agacttttaa
     5821 ctcagggtat ggtgttaaaa gatggtgcta aaatgtcaaa atcaaaaggc aatgttgtag
     5881 atcctgatga gattatagaa aaatacggtg ctgataccgc aagacttttt atactttttg
     5941 ctgcgcctcc ggctaaagag cttgaatgga atgatgatgc ggttgaaggg gcttatagat
     6001 ttatttgcaa actctatgat agggcgcaaa atgttaaaaa aggtgagctt gtagaattaa
     6061 aacaagaaaa tttaaacaaa gaagaaaaat atgcaagatt aaaggtatat gaagctttga
     6121 aaaaatcttt tgaagtttat catcaaagtt ttgcttttaa tactttaatt gcagcttgta
     6181 tggaagcttt aaatgcttta gcactttgta aaaatgaagc tttggagcaa gaggcttttt
     6241 atattatttt aaatatttta gagcctatta ttcctcatgt ttgttttgag cttagcgagg
     6301 agctttttaa atgtaaaaat ttcaaaaaat tagaacttaa agaagaggtt tttgtaaaag
     6361 atactttaaa tttagctgta agtattaatg gtaaaaaaag ggctgaattt gaaatttcaa
     6421 gtagtgcgag caaagaagaa attttagctt ttgcaaaaga aaatactgct aaatggcttg
     6481 aaggtaagag tatagttaaa gaaatttatg tggaaggaaa gctagttaat ctagtgatta
     6541 aatgaaaaag attttaattt tttgtatagg tttattttta ggtgcttgtg gatatattcc
     6601 tacatcaaaa atcgctaata atattttcga tgagaaggtt tatgttaatg ttgaattaag
     6661 tcaacaagac ccaaaaaata gtatctatgt tgccgatact ttaaaagaaa tggtaatttc
     6721 aaaattaggg cgtaaacttg ctttaaaaca cgaggcagat gatgtaatta atgttaaaat
     6781 gaataattta gaatttattc ctttagctta tgataaaaat ggctatgtta ttagttataa
     6841 agctaaatta aatttagatt ttaatgttgt ctttaaagat ggttcaagtc aggcttttag
     6901 tacaagtgga agttataatt ttgaaatttc tccaaatagt attattagtg attctgcaag
     6961 gtatgaggct attcgagcag cttcaagcga ggcatttgat gagtttattt ccgtaattgc
     7021 tattaaaggg caaaaacgtg attccaaata ctaatgaaat agcaaagcaa actttaattg
     7081 cattaaaaga aagaaaacta aaaccaactc ctgaaaatta tacggaaatt tttgaagaat
     7141 tatctttaaa atatggtatc acaagctcaa ataaagctaa acttgacaaa tacaaaacct
     7201 tgcttttgcc gatttatcaa caagaattaa attctaaaac tataagaagt ttagaagaac
     7261 taattagttt tttaatttct gttttaaata gacaaagcgg aaaacaattt agtgaatttt
     7321 ttgatttttt atataccata tctaaaactt tgcaaataag taaggataaa aagataagag
     7381 atttggctaa ggtgacttcg attagaattt ctaaaactat ggatagtgaa agtatttact
     7441 tgcttactaa aaaatggaaa gagcttgaaa gaaattatga tgaaaatgac ttagaagaac
     7501 aagctcgtaa atatggcatt agtaaatatg atgattatga tagcgtgatt aaaaaactct
     7561 tagtcaagct tgaagagcgt agttatgagc actttagtga attattatgc ttgggtttaa
     7621 atccttcatt ggtagaagat ttaaaaattc aaggttttat acaaaattta acacaaaagc
     7681 cttttgtaat aggcgaagaa aattttaaaa atgaactaat ggaatttata aatcatcgca
     7741 taatggttga taatatgtat gtccaaaaaa atttaaattt ttttaacgat aatctaaaaa
     7801 aaatctatga attgcttgtc ttacttaata aatcgaatga aaaaaatatg gattttatca
     7861 ataccttaaa accagatgaa aatggggaag taaaacttag ttttgaggat ttaaaactaa
     7921 aatttaaaca acttggagaa aaaattacat ctttaaataa tcaaattgaa ttcacgcaaa
     7981 gcttagaaga gagagaggct tggagtgttc ttaaagagct tgataaaatg gatgaaaatt
     8041 ttaataagta taaagttaat tattctttag ctttattttc tatagtaaat taccgtttca
     8101 ttatggaaaa atatggtatg ggaagtttga atgaaatttt tgttcgattt aaaaaaattt
     8161 taaaagattc ttgtagtgaa tttgatgaac tgtggatgat agatgaaaag agttatttga
     8221 ttgtttcgcc aggaaaaagc aaagatgaaa ttacacagct tgtaaataca aatcttaaaa
     8281 ctatagaaaa ttttagattt atttataagc aagatattat aactcctaaa attcacgtgg
     8341 cttatcttga taagcaaagt aagccaagta ttaatatttt agatgagtta ataaagcaaa
     8401 ttgcagcggt taatgaacaa cataatgaaa gttgagaatt ttttagctca aaaaagtata
     8461 aattacgata aaattgatcg ttttttgatg tttagaatgt atgaaaaata taagaaatat
     8521 tttaaaaata ttcctataat ccaacttata ggcacaaatg gtaaaggtag cacgggtaga
     8581 tatttaaccc aacttttaga aaatttaaat tataaaatag ggcattatac tagcccgcac
     8641 attttcagtt ttaatgaaag attttatctt gatggtaaga ttgcgaatga tgaagaatta
     8701 gaacaagctc atataagact tgaagaaatt tttaaacaag acttgcaaaa attaagttat
     8761 ttcgaatatg ctactttttt agctatgatt ttatttcaaa aatgcgattt cattgtttta
     8821 gaagcaggag tgggtggaga atatgatgct acttctattt ttgaaagaag aatgagtatt
     8881 tttacaagaa ttggatttga ccatattcaa attttgggca attctttaga agatattgca
     8941 agaaccaagc ttaaagttat ggcacctata gcacttataa gtgatgagca agagcaaaat
     9001 gttttaaatt tagcaaaaaa aattgctttt ttaaaaaaag ctaatttgca agtttcctcc
     9061 ttaaatcctt ttttgaaaga aaaatttgag atttattgta aaaagtttgt tttaccttat
     9121 tttttaaagc ataatttaaa gcttgcatta aaggcttgtg aaattttaac ttcgcaagaa
     9181 aaaaccttag aagctttaaa aaagttacaa gagttaaatt tacaaggaag atgccaagaa
     9241 atttctccaa atttttttgt tgatgtgggt cataatccca tggctgctaa ggccatgctt
     9301 gataaatttc aaggagaaaa aataaatctt atttataatg cttatttgga taaggatatt
     9361 tttcaaattt taaatacatt aaagcctatt attgatacaa tacaaatata taaatataaa
     9421 agtgcagaac gaaagctggc cgatgatgaa atttatagta ttgcatcaaa gctaggcatg
     9481 caatgtaaag aatttgtaaa attagaagag aataaaaaaa atctagtttt tggttctttt
     9541 atgctggtag aaaatttttt aaaggagtgg tgtggtaaaa aataaattca ctattaccat
     9601 tacagatatt aacggttcaa gacattttta tttaaatcaa ataatcaaaa aaatagtttt
     9661 ttatattatt gcttttattg ttttattttt agtttttagt ggtttttata tcaaatatct
     9721 cgatagcaaa cttagtgata tcagtgaaaa gcgtgaggag cttttgaaaa aaagcaaaga
     9781 attggaatta tctaattcgc aaatgcaaaa aagcatagaa gaaaaaactc agcagtatgc
     9841 agctatagaa gataaaatag cttcttttga agaggctttg ggcttagaag cagaaaataa
     9901 tcttacaatt agtgcaagac ttgataatct tcagcttacc aatgagcagc aacttggaat
     9961 tttggggcaa attcctaatg gatggcctat tgaaaataaa ggcattacag gaaattttgg
    10021 ctggagagag catccgcttt taaaaagaag ggaatttcat cctggtattg atttaagagc
    10081 agaaattggt actcctattt atgcaccagc aagtggagta gtggaatttt caggttatag
    10141 tgataatggc tatggctata atgtaatttt attgcataat tttggtttta aaacagtatt
    10201 tgctcatatg atgcgcaaag aagtggtcaa agcaggtcaa tttgttaata aagggcagtt
    10261 gataggttat agtggcaata caggtctttc tacggggccg catttgcact atgaggtaag
    10321 gtttattaat aaaactttag aacctttgta ttttttaaat ttgcaaagaa aaaatatgaa
    10381 tgattttttt aatcaagaaa ggagagttcc atggcaatct ttaataaagg cggtatcagc
    10441 ccaacatcca gctctagctc agaaacaaca gtaatttctt caggtgcgag aattgagggt
    10501 aaattttatt ttgcttctat gcttcatgtt gatggagagt taagtggtat tattcattct
    10561 gaaagcattg tggttatcgg aaaaaatgga aatttaaaag gtgaattaca agcagataaa
    10621 attgtagtaa atgggtgttt tgaagggcaa cttgaggcta atagtttaga aattttagcg
    10681 ggcggagttg ttaatggtga tatttcaacg caaaaaattt ctatagaaaa tggcggtcgc
    10741 tttaatggaa ctagtaaaat taaagaagat actatcaaac ttattgaaaa taacaacgaa
    10801 gaataatgca agcttcattt tatgaatact tacaaaatcc aaaaatttgt gaactttttc
    10861 tttgtaaaga tgaaaaacaa gcagatttac tcgctcaagt ttcacgattt aagggtttaa
    10921 aaacctttgt tttacctgat tttagagcgc agtttggaga tgatttaagg gctttttcta
    10981 aagaactttt tgatctttgt aagattttaa atgcttatca taaagaagaa gaaaaaaaaa
    11041 tccttatttc tcctttaaat actgttttaa aaaaacttcc ttcaaaaaaa catttacaaa
    11101 attatcatat cgataaaaaa caaaattttg atttgaaatg ttttgaagat gaaatttcaa
    11161 gattgggata cgaatttgta gatatagttc aggataaagg tgaaatttca attcgtgcgg
    11221 atattattga tattttttgt atcaatgaag aaaatcctat tagaatttta ctttttggcg
    11281 aagagattga aagtataaga tattttgatt tgcaaagtca aaagtctatt cctaacgaac
    11341 tagaacattt tgaaatttgt ccttttttaa aatattttga caaagaaaat tatgaaattt
    11401 ttaaggacaa attagaagat tttcaaagcg atgctttaat acatgatatc aattctttag
    11461 gcttttggtg tattgatgat ttttttgatt atttagaact tgatttttta gcttgtgaaa
    11521 agtttgatat taatgaatat gaaaaggata taagttttgt gaatgcaaaa attttacctc
    11581 aagctaaaaa atttaaagaa ttgcaaagtt cttacaataa agattttttt gaatttcata
    11641 aaaataaaaa aatcacactt ttagctaaaa acgaagcttt atttaaagct ttagagcttg
    11701 aagatactca aaatatccat tttgtaaaaa gtgatttaag gcttaatctt attagtcctg
    11761 aagagctaat tatttcttta aatcaaaaag aaaaacaaaa aacaagaaaa aaagctagtt
    11821 tgattataga tgagcttaaa aatggggatt atatagtaca cgaagattat ggggtaggta
    11881 aatttttagg tcttgagatg atagtgataa gcggagcaaa aaaagagttt gttgctatag
    11941 agtatcaaaa ttctgataag cttttattac cagtggaaaa tctttatttg attgataaat
    12001 atttgggcgt gagtggatct attccaagct tagataaact aggtaaaaca agctttatta
    12061 aacttaaaga aaaattaaag actaaacttt tagccatagc ttctgaaatt gttattatgg
    12121 cggctaaaag atctttggtg caagcaaaaa aaattacagt ggatttaaat agacagactg
    12181 attttatagc tagtgcgggt tttatttata caagcgatca agataaagcc tgtcatgaaa
    12241 ttttgcaaga ttttcaaagt ggaaaagtca tggataggct tttaagcggt gatgtgggtt
    12301 ttggaaaaac agaagtcgct atgaatgcta tttatccagt agttaaaagt ggattttgcg
    12361 catttttatt tgcgcctacg actttgcttt ctcatcagca ttataaaacc ttaaaaaagc
    12421 gttttgatcc ttttgatata aaggttttta aactggatcg ctttacaagt agtgcagaaa
    12481 aaaaacaagt tttacaaaat ttaaaagaaa ataaagcttg tgtagttgta ggaactcatg
    12541 cacttttaag tgtagaatgt gaaaatttag cccttgttat tattgatgaa gagcataaat
    12601 ttggagtgaa gcaaaaagaa aagcttaaag aaatcactca aaattcacat attttatcca
    12661 tgtcagcaac ccctatacca agaagcttaa atcaagcttt aagttctata aaatcttata
    12721 gtgttttgca aactccacca gaagatagaa tggatgtaag aacttttgtc aaagaaaatg
    12781 atgacgcact tttaaaagaa gctatagcaa gagagttaag acgtggtggg caaatttttt
    12841 atattcataa tcatattgca agtatagagc aatgtaaaaa gcatctatta gaactttttt
    12901 ctactttgcg tattttgatt ttacattcta aaatcgatgc caagatgcaa gaagaagaaa
    12961 tgttgaaatt tgaaaacaaa gaatatgatt tgcttttaag tacctctatc gtagaaagtg
    13021 ggattgattt accaaatgca aatactatca tagtagaaaa aagcgatcgt tttggcatgg
    13081 ctgatttgca tcaattgcgt gggcgtgtag gaagaagtga taagcaaggt tattgttatt
    13141 ttttaattga agataaaaat gctatcacaa aagatgcttt aaagcgtcta gtttccttag
    13201 aaagtaattc ttttttaggc gcaggttcta ttttggctta tcatgatctt gaaattcgtg
    13261 gcggtggaaa tttattaggc gtagatcaaa gtggacatat tgagcaaatt ggatatagtt
    13321 tatatcttaa aatgttagaa gatgaactta atgctttaag taaaaatgaa gtggatcaaa
    13381 aagaaaataa acttgattta aaactcaatg ttaatgcctt tttaaacagc gaacttatca
    13441 gcgaagatcg cttaagatta gaactttata gaagacttag caagtgtgag caagttcatg
    13501 aggtttatga gatcgaaggt gaaattgaag atcgctttgg aaaaattgac atttatacta
    13561 agcaattttt atctttgatt actattaaaa ttttagcttt aaataaattt aaaagcatta
    13621 gtaactatga gcaaaatatt caatttactg ctttaaatga tgaaaaagaa ctcatcaagg
    13681 caaaaagcaa agatgatgat gatattttag aggcaatttt aacgcattta agaaaggctt
    13741 aaaatggatt ggaataaaac ttatgcagca atttatagag caagaaaaga ttatttaaag
    13801 cctatttttg aaatcgatcc tattgcttta aaagatttag taggtatgga aagtcaaaaa
    13861 aaagcacttt atgaaaatac tttaaatttc attcaagata agggagcaaa tcacgcactt
    13921 ttatggggat ctaagggcac tggaaaatca agtttaatta aagctatatt taatgaattt
    13981 aaagaacagg gcttaagact tgtcgaatta aataaagaag atttatttgc cttagcagat
    14041 atcatcgatg aaatcagatt agaaaatttt aaattcatac ttttttgtga tgatttttct
    14101 tttgaaaagg gagatgatag ttataaattt ttaaaacctt tacttgaggg aagcatagaa
    14161 aaagccccaa ataatgtaat tatttatgcg agttcaaatc gtaggcattt attaagtgaa
    14221 agcattactg ataatcttga tacgcaaatc acacatacag aacttcattt aagcgatgct
    14281 gctgaagaaa gattaagttt gagtgataga tttggtttgt ggttaagttt ttatcaggga
    14341 aatttagaag agtatttaaa gatgatagat ttttatttta aagattattc ttgtgataaa
    14401 gagcttttgc acgctaaagc taaagaattt gctactctaa gagcaagtag aagtggtcgt
    14461 accgcaaagc aattttattt agcttttaag gagaatttta aatgactgga gcacaaattt
    14521 ttaccaagct tttaaatttg gatttaaatt atcatgattt tgattggctt gaaaatcaag
    14581 gattgagtga atttgagctt ttaatttctg tcgttttaac tcaaaataca aattggaaaa
    14641 atgtcttaaa agctttagaa aatttaaaaa aagaaaatat tgcaagctta gaacaaatca
    14701 atactttatc caatttagaa cttgcaactt taattaagcc tagcggattt tataatacca
    14761 aaactaagcg tttaaaaggt ttggtagaaa gtatcataaa cacttatgaa aatttagaaa
    14821 attttaaaac aaatgcaagc agagaatggc ttttaaatat caaaggttta ggttttgaaa
    14881 gcgttgatag tattttaaac tatctttgca aaagagagat tttggttgta gataattata
    14941 gtttgcgttt ggctttttac ttaggttatg agtttgaaaa ttatgaagaa ttaagagaat
    15001 tttttcaaag tgacatagag agtgagcaag aaaatttgta taaaatttta ggaaaaaaat
    15061 gcgaacttta cgaactttat caaatttttc atgctttgat tgtagctttt gcaaaacaga
    15121 gttttaaagg acaaaaatta agccctaagg gtgaagaatg gatcaaaatt ttaaaggaag
    15181 atttatgaaa gcaaaaggaa gtgaacttat acctgtttta actatagcag ggagtgattg
    15241 tagtggtgga gcagggatac aagccgatct taaaaccttt agtgcacaca atctttttgg
    15301 tatgagtgtg gttttaagtg tggtagctga aaataccgca agggtgattt ctgtacacga
    15361 tatacctact caaagcgtgg atgaacaaat gcttgccgtg tttgaagata tagtgccaaa
    15421 ggcaactaaa atcggaatga taggttcttg tgaattaatg agctgtgtag ctaaaaattt
    15481 aagcgagttt aaacctcaaa atgtagttat tgatcctgta atgtttgcca aaaatggcca
    15541 tgctttaatg ccgcaagaaa attgtgattt tttcaaacaa actataataa aatttgcaga
    15601 cattcttact cctaatattc ctgaagcaga gtttttatgt ggttttaaga tcgctaatga
    15661 agagcagatg ataaaagcag ctaagcattt atgcagcttg ggggctaagg cagttttact
    15721 taaaggcgga catagtgaag caaatgccaa tgatgtgctt tataatggaa aagaaattta
    15781 tattttaaaa ggcgaacgca tagaaactaa aaatactcac ggtacaggtt gtacgctttc
    15841 ttcggctatt gctagtaatt tagctaaagg caaggattta tttcacgctg ttagtgaagc
    15901 taaagagtat gtaagaaatg cgatttatta ttcacttaat cttggaaaag gttgtggtcc
    15961 tacaaatcat tttttcaagt ttctagatga aaaataaatt agatcttagc ctttatttgg
    16021 ttgctactaa gggaaataaa agcgaggagt gttttttaaa tactttagaa aatgctataa
    16081 aaggcggagt aagtatcata caacttcgtg aaaaagagct taatgcaaga gaattttata
    16141 aactaggctt aaaggtgcaa aaactttgca agtcttataa aatacctttt ttgattaacg
    16201 atagggtgga tatagcttta gccttagatg ctgatggggt gcatttagga caggaagatt
    16261 tagaagcaaa attagctaga aagcttttag gagatgaaaa aatcataggc ttaagtctta
    16321 aaaagttaga acaacttgag tttatacaag gagtaaatta tctaggttgt ggagctatta
    16381 aggcaacgcc tactaaagaa agttcgcttt taagccttga gcttttaagt caaatttgtg
    16441 ataaaagccc tataggggtt gtagccatag gtgggattga caaagaagca cttgttgagt
    16501 taaagggtat aaatttaagc ggtgtggctg tggttagggc gatcatggat gctaaagatg
    16561 cttttttggc agctaaagag ctaaagcgta aaatctatga aaatttatct cttaaatgaa
    16621 actccttttg aaggggtgga aaatcttatt ttaaatgaga ttgtttttta tgattttagt
    16681 gtggatttga gtttgtatga tgctttaatc tgcacttcaa aaaatgcttt aaaagcttta
    16741 caacatgcaa aaatcacttt aaatttcaaa ctcaatttat acgctgtggg acaaagtaca
    16801 gctcaatacg ctaaaaattt aggttttaaa aagattaaaa ttccatcaaa ggcttatgga
    16861 aaagatcttt ttcttgaatt taaagaggag ttaaaaatgc aaaaatgttt gtatttaagg
    16921 gctaaaaata ttgtttcaac tttaaatttg gatcttaaaa atgtaggtgt ggatttagat
    16981 gaaatgattg tttatgaaaa tgtttttaaa aaaggcgaca aaaagcttat ctatcctgct
    17041 atttttatat tcacctctcc tttaagtgta gaaaattttt taaaatttta tagcttaaaa
    17101 gaagaagata aggttgtagt tatagggcaa agcacagcaa agaagctttt aaattttaaa
    17161 aatctttata tatgcgaaaa tcaaagtctt ttagactgtg ttaagctcgc taagactttg
    17221 gtttaatttt ttaaattcca aaaattttct ttgggataaa taataatgct ttttgtgagt
    17281 aaaatttcat cattgacgtt tttatcacga tttaaagcaa tactaatgtg ggctatgata
    17341 acaccatctt tgtttaaatt tgcatcggga ttgaagttgg aaaatttaaa attaacacat
    17401 tgtgcaatag gataaaaata ttttatttta atcaaagctt ttgtgtaatt aaaatatata
    17461 ttatctaaac attctttatt ttcttgcctt gcttgatata aaaaatattt agaaaattgt
    17521 gttgcattat gacttaaaat ttgagcttga aggtagtaat aactatcttg gattattttt
    17581 ggagtatagc tggatatgtt taaggtcaag ctcatccata gacttattag tagtattaaa
    17641 aaaattgtcc aaattaaaac ataagctttt ttcatagtaa aattcttttt ttaagacaat
    17701 attttgtttg tctttttaga caaattttta atttattgtt ttgcaggtta aatgagctta
    17761 tgtttttaga aatcaatcct tgttggctta attgttcatt aaattttggc tttatttcat
    17821 atataagttc ttcattttgc aatttgataa ctaattgagc ttgcaaagga ataaaactgc
    17881 ctgtaaaatt tgcagatata ccattttcca agatagatat tttttcaatc ttattaattt
    17941 tataagcata gctaatatgt tcattgtcgt tatataaatc ttttctattt tggagttgtg
    18001 ttttaaaatc agaatgaggt gaataaagtg tatgattatt ttctaaaata agagcagaat
    18061 taataagata aagtttatta tcttttaggc taattaactc atcttttaaa agacatttta
    18121 atgtattctg tgaaaatgta atattaatac aattttgtat taatttttct attttaagca
    18181 agtttaaatg tgcttgagtg ataagattgt ttgtatgtaa agcagtaaaa tttaaatgat
    18241 aaaaatccat taaaggtttt gaaagtaagt tagttataaa agtaaaaagt attagtgata
    18301 ttataagttc aaaaagtgta aaagctttgc tcattcttta aaataaacgc tataattttg
    18361 atcttgaaag tataattttt gaaattgaaa tataccgtca ttaacaaact gttcttgtaa
    18421 aactataggt tttaaggctg aagtttgaag tatgatggtt ttaaaaatag gcttttcata
    18481 taattcttct tgaagtttat agagtctttc aaaaatattt aaattttcat agtttttgta
    18541 aagttgaata tagtaataaa aaatgccaat gaaaattaaa gatatgatcg ttatagcact
    18601 aatgctttct ataagtatga aagccttttt catttagcgc tgctagcatt tatggcttca
    18661 aaaaaacttc cgcgaattcc tttttgttcg agtattttta tgccttttat tgtaactccg
    18721 ccaggggagc aaatattttc tttgataata gctggatgtt catgttctag taaagcacta
    18781 gagcttttaa ataaagagcg cgtaagattg agactaagtt cttttgacaa accttcataa
    18841 actccagcat tagcaatgct ttctgctata agtgctaaaa aagcaggagc gcagccgcta
    18901 atcgccatag ctgcattcat ttgtatttca ttatctaatt tataagccga gccaaaagtt
    18961 tttaaaatgt ctaaaatttc attttcaaaa tgagagtttt taagtatata tggtgtggtt
    19021 gaagccttgt atttagctgc tgtattgggt attattctaa cataattttg agctttgatg
    19081 gtttgtagtt tttcaaaatc aacattggct aaaacagaga ttaagatacg tgcttgtcct
    19141 tttagcattt gagcaatatt ttctaaagca taaggtttaa atgctaaaat aacatcttta
    19201 ccttctatgt taaaatcttt gtaaagtaag gttttaaagc cttctttggc gagggcttga
    19261 agtttttcta tacttcttcc tactatacaa atttcataat catcttttaa cccataggct
    19321 aaggctgttg ccatagatcc atttgcaagt atatagagca ttatttttta atataattag
    19381 caatttgatc agcttgaaaa aagtcgggat aattaactgt atctagtatc acttgtacca
    19441 tagtattatt atcaagatta atgactactg gagctagaaa attcactgtc gattcttcaa
    19501 tgctttttgc tatggctact atattaaaaa ttttcatatt agattcaggt gttaaagaaa
    19561 gaagctcttg ataataagtt ggtatatcaa attcataatc aggtctaatc aaataaggat
    19621 taattaaaac aaaagaaaag tctttaccat caagactttt aagtcttaca aatacttcat
    19681 cgatagttga aaattccata tttttggttt cttcaaaacc taagataggg catttaacag
    19741 ctagggtcat gttttctcct caagttataa tgtttaatat tttaacataa aataagcaat
    19801 aatcattcca aaattttaaa ttatttaatt aattttatta taattttaga agaacataat
    19861 tataaaatcg ttaaaatata tatttttgag aatataaatc aaggtgaagt atgaaaaaag
    19921 gtattttttt attggttttt ttaagtattt tttttagtgc gtgtagtacg aaaaatgatg
    19981 aaggtttata caatcttagt gctagtgagt ggtataagca aattattaaa gatttgcagg
    20041 acaaggattt ggaaaaagct gatgatcatt ataatggtat ggcaagtgag catgttgccg
    20101 atcctttatt agaaactact ttaattattt tagcacaagc tcatatggat gaagaggaat
    20161 ataagttagc tgaattttat ttagatgaat ataataaaaa atttggaaat tcacgcaatg
    20221 ctgattatat tcgttatctt aaaattaagg caaaatttga tgcatttgca gtgccaaatc
    20281 gtaatcaggc tttaatgctt gaaagccaaa aagaaataga tacttttttg aaagattatc
    20341 cttatacaga atatgaacct ttggttcaaa caatgcttac aaaatttaat ttagcggttt
    20401 tttatcttaa tagtactata gaaaatctat accagcgcat agggcatgat gaaagtgcac
    20461 aaatttataa acaaagactt caagaaagtg aattttatca gcaaagtatt atcaaacctg
    20521 agcttccttg gtatagaagt atatttgaaa gattttaata aacaaggaaa ataaatgcag
    20581 attgaagaga tacaaaatta tccagcaaat ttaccagtat tggttgaaga tgaattattt
    20641 ttatatcctt ttatgataac tcctattttt attaacgatt tatccaatat gaaagcttta
    20701 gatctcgcga ttaaaaatga tagcatgctt tttgttgcac cttcaaagtt ggaaaatgga
    20761 agaaattttg atgaaattta taattgcgga gtgattggga ctatcatgcg aaaagttcct
    20821 ttgcctgatg gaagagtgaa aatacttttt caaggatatg ccaagggtaa aattatagag
    20881 caaatttcta ataaaccttt agaagccaag atagaactta taaaagaaga ctttttagaa
    20941 ggaactaaaa aagaagcact tcttgaagtt ttaaaagaga aagtaaaaaa tttggcaaat
    21001 attagtcatt atttttctcc agatctttta agaacaattg aagaaggttt tgatgcatct
    21061 aggatttgcg atttgatttt aaatactgtg cgtattaaaa aacaagttgc ttatgagttt
    21121 tttgttttaa cagatcttga gcaaaaatta gtaaaattaa tagatttaat tgctcaagaa
    21181 atagaagcta ataaaattca aaaagaaatt aaaaataaag tacattctcg tattgataag
    21241 gtaaataaag aatatttttt aaaagaacaa ttaagacaaa ttcaaaaaga gcttggttct
    21301 gatacgcaaa aagaagatga ggttagagag tatcaaaagc gtctggagtt aaagaagaaa
    21361 tttatgcacg aagacgctta taaagaaatc aaaaaacaaa ttgaaaaatt cgaacgcatt
    21421 catcaagata attccgaagc atcgatgatt caaacttaca tagaaacagc attagatgtt
    21481 ccttttgaaa aaatttctaa gaaaaaactt gatattaagg aagtttcaaa acagctcaac
    21541 catgatcatt atgcattaaa taaaccaaaa gaacgcatag aagaatattt tgcagttagg
    21601 gagcttttag aaaaaagaaa aatagcagaa aaagatggtg ctaaagttat actttgtctt
    21661 tatgggcctc ctggcgtggg taaaacttca ctggcaaatt ctgtttcaaa agctttaaaa
    21721 agagagctta ttcgtatagc cttaggtgga cttgaagatg ttaatgagct gcgtggtcat
    21781 cgtagaactt acataggcgc tatgcctgga cgtattactc aaggactcat agaggcaaaa
    21841 caaattaatc ctgtaattgt attggatgaa attgataaat taaatcgcag ttttagaggc
    21901 gatccaagtg cggtgctttt agaaatttta gatccagagc aaaattctaa atttagggat
    21961 tattatttaa attttaatat tgatttaagt aaagtcattt ttatagcaac ggcaaatgat
    22021 attagcaata ttcctgcacc tttaagagat agaatggaat ttatagaact tagctcttat
    22081 actccaagtg aaaaatttca tataatgaaa aaatatttaa ttccagatga gcttaaaaaa
    22141 catggcttaa aatccaatga attatttatt gatgatgaaa ctatagagct aatcattagc
    22201 gattatactc gtgaatcagg agttagaaat ttgcgtcgca aagtggcaga gttgtgtcgt
    22261 aagagtgcta aaaaactact tttagaaaat attaaaaaag tcattattaa tacaaaaaat
    22321 ttgaatgaat ttttagataa aaaagttttt gaaatagaaa aaaataatgg agaaaatcaa
    22381 gtaggtcagg tcaatggttt ggcttggaca agcgtaggtg gagatgtttt aaaagtagag
    22441 gctgtaaaaa ttaaaggtaa aggagaatta acgctcacag gaagtttggg tgatgtaatg
    22501 aaagaatcag ctagaattgc ttttagcatg ataaaagttt taatcgatga aggaaaaata
    22561 aaaataccta aaaaaataat tattgatcct aaagttaatg tttatgatag ttataatatt
    22621 catatacatg tgccagatgg agctactcca aaagatggcc caagtgcagg tattacgata
    22681 agcacagcta ttgcttctat ttttagtgat aaaaaggtta aagcagatgt tgcaatgacg
    22741 ggtgaaatag atttaaaagg aaaagtttta ccaataggcg gattaaaaga aaaattaatt
    22801 gcagcttata aagcagatat aaaaacagct ttaattccaa gaaaaaatta cgaaagagat
    22861 ttaaaagata ttcctagtga ggttagagac aatatggaaa tcattgctgt tgatactttc
    22921 agtgatgttt tagaatatac tttggtttaa ctttattttg agaataaatg tataagaaag
    22981 caaacttttt acaagtttgc tttaaaagat tatagtcctt caaaaggatt attgattact
    23041 tcttttctat ccactatata agggataaga gctacatgtc ttgcacgttt gattgcaact
    23101 tctaccattt cttggtattt tttgcttgtg cctgttaaac ggcgtggcat gattttaaat
    23161 ctttcagata aagcatgttt taacattgct gtatctttat aatcaataaa ttcaactttt
    23221 gcttcagtgt atttgcaata tttgcgagag tattttcttt tttctgccat agtttatcct
    23281 ttaaaatggt aaattagtat catcgctatc ataagcatcg atatcaattt cttttaattt
    23341 ttcttcgtgt tgtgggtttt ggtttctttg tggagtaggg tttgcttttg ctttattaaa
    23401 attttgattt tcactcatat aaggatcata gctttgattt tcatagtttc cactataatt
    23461 gttgtttgaa aagctattat tgccaaaacc accttgttgt ggagcattgg aattgccaag
    23521 catttccata ttttcaactt gaatgctatg tttagagcga ttttgtccat tttgatcact
    23581 ccattgttca aatctcaaac gtccttctat gagtactttt gaaccttttg taaggtattg
    23641 gtttgcaact tctgcggtgc gaccataaaa gcttatatca ataaagcaag tttcttctct
    23701 tttttctcca tttgcggtaa atcttcttgt tactgctata gcggaagctc caatagcact
    23761 accgctttgt gcataacgca tttctatatc acgtgtaaga tttccaacca aaacaacttt
    23821 gttaaacatc tttttcctta ttgaatttca ggagcatcta aaggtttaat ttctttttta
    23881 gattgcttaa tcccgtggct tagtttttcc caagctgcaa tttctttttt attttcatat
    23941 tttacgatta aaaatcttat tacttcttca gtgattctta acaccctttc aagctcagcg
    24001 atcaagtttg taggagcttt gaaataaatc acaaaataag ttcctctttc gtattttttg
    24061 attttatacg ctaattttct agtacccatt ggaacaacag tttcaatttc tgcactattt
    24121 ttggttagga cttctttaac gaattccaac ttcgcattca cttcctcttc agtaagtgtt
    24181 ggttttaaga taaataaaac ctcataatgt ttcatctttt ctccttatgg atattaaagc
    24241 ccatttttat gagcaaggat tttgcataaa gcaagactag attatatcaa aatatactta
    24301 attagtcttg aatacttaag gttttatcta aatttgtttt gatttcttca agcatagcaa
    24361 aacgtttttt atacatggag cgtttttgcg aagggatttc ttctaggttt ttttgagagt
    24421 ggtggagttt atagtatttg tgtttattga tttttattaa ttctccacca ttttctagcc
    24481 aaattttttg ataatctaca aaatagcctt tttcttttcc tttttgagaa cggatttgat
    24541 ttttttcatg tacacctaaa gtagtttgaa gttttaaaat ttcacaaagc atcttagagc
    24601 attctataag taaagcaaca gggcgcaaac catgacattt tttagttaaa attttattaa
    24661 tttctaaaat attaaaatct ttgtatttat gtccttgtat acaagaaagt agaagattgt
    24721 tttctaaagt aaagcaaaaa ttacattgta agattgtgta ttttttaaat tttaaagaaa
    24781 aagcccaaaa accttcttcg caaacattat agttatatcc taaaaaaagc tcaaaatctt
    24841 catcaaaaga aaaaattatt tgctcctcgg gaagaaattt aaaacaagcg agtcccttat
    24901 caacatcata aataagtgtt ttaacacgtt catttgcttt aaaactttta tcgcaaaatc
    24961 ttcttgtagc attgtaacaa gcatagggtc tttgagagaa aaagtctttt aaatgtttat
    25021 ttttttcttt attaagcgtt ttttctagaa gtcttacttg aggaaaatat aaaatttttc
    25081 ttgcttgaaa acgcaaatag cgccaaaaga ttatactttt tcttctatca gtaaaatttg
    25141 gaatagggta ggaaaatttt ttattcacct ataatccttg atatatcatt ataagttgca
    25201 aagagcatta aacttaaaag tattgccatg cctgtatagc ttaaatattc aaaagtacgc
    25261 tgtggaactt tgcgtctaaa aatcatttca taaagattaa aaagtatatg tcctccatca
    25321 agcataggaa taggtaaaag atttaaaatg cctaaattta tagaaattaa agcagtgata
    25381 aataaaagca aagtaaagct attttgtgca gcctttgagg taatttcagt catggtgata
    25441 ataccgccta aattttttgc ttcaacttca ccacttatga gttttacaat acccttgatg
    25501 atgagtgtag aagcttgaaa actttcttgt gcggcatatt taaaactttc taaaccttgg
    25561 tgttttacaa gagtgcttgt cccatttgga ctgactccaa gttgaggttt ttcaacgatt
    25621 tgtccaaagt cattgtatcc ttgtcctatt tttggagtta aaataaattc taaatttttt
    25681 ccttctctat tgattaatat tttcaaagga tctaaactta aatgctttga aatttcatca
    25741 aaggtttgaa ttcttatacc gttaatttct aagatagtat catttttttg aagtcctatt
    25801 tcttgtgcag cagagtttga cgctatgttt cctatttgcg gagcaagttt gtttagacct
    25861 aaatttccta tgataatata aagaaaaaaa gctaaaatta gattaaaaaa tggtccagca
    25921 aaaagaatat aaatcttttt taaaggactt aaaatgctat agctatcttt gtctagattt
    25981 tcaaaaccag gacgcatatc atcttgtcct ttaagtttaa catatcctcc aagtggtaaa
    26041 gtgcttaagc gatagtttgt gcctttaaat tcacgctcta taagactttt tccaaatcct
    26101 atactaaaaa cttcaacttt tacacccaaa gatcttgcag ccaaaaaatg tcctaattcg
    26161 tgaaagaaaa ttaaaaatga gatgactaaa acagttgcta aaaattcaat agaataaaat
    26221 ttaattccca aaatcaaaat aacaattaaa aataataaag atctcatttt tctccttttt
    26281 tttgagcttt tatataagta tagatgtatt caaatccaga ataaagagtt aaaatcaaag
    26341 ctatgtaaag tagaatttca ccgcctatcc actccatgat taaaaatcct atcgcagtca
    26401 tttgaaaagc ggttttaagt ttgcctgcaa aagaagcatt gacatttaaa ttttcgctaa
    26461 tcattacaac tctaaaacct gtgataaaaa attcccttac taatataata taaattaccc
    26521 attcattagc ttttcctgta agtaaaagcc ctaaaaaagc tgctaaaaca agcattttat
    26581 cggctaatgg atctaagatt ccacccagtt ttgtagtttg tttccaagtt cttgcgatgt
    26641 atccatcaaa aaaatcactt aaagctgcta atgaaaaagt taaagcagca aaatagttaa
    26701 tccaactttg atgaatattt tcaaaatgat gaattaataa aaaaaatagc aaaggcgcta
    26761 aaaccattct aaaaatcgcc aagatattgg gtaaattcat aacaagcctt gtgaaattaa
    26821 atgtaaaatt ataatcaaaa ttgtataaaa tttaagcaaa gacttagtaa aaatacaaaa
    26881 aaagaatcag tttattttta tttaaatttt gcttaaaagc aaaatttaaa taaattttac
    26941 aacttcatca aaactaaaac gatttttttg aggatttttt tcatcgttgc aatatcctaa
    27001 agctaccacc aaacttgatc tttctttttg aatattaagt gataaataag aatcaagctt
    27061 ttctttatca aaaccaccta tagtgcaact tgctatattt aaagcattag cactgtaaag
    27121 tatgctagct agagctatat gagcttgttc tcttgcataa gatatttttt gttcttgatt
    27181 cagagatttt aaaaaaggca tataagcatc taagcgtttt tgaatttctg tttcactcat
    27241 atctcttttt ctaagttttt cttcaaaata atctaaaaaa tcaagtcttg aaatgatgat
    27301 aattaatgca gcgcaatctt ttacatgttt ttgttggttg caaattttag aaagttcttc
    27361 ttttcttttc tcatcttgca ttactataaa tttccaaggt tccagtccta aggaactggg
    27421 gcttaatctt gttatttcta aaatagaatt taaatcctct tttttgagtt tttcattttt
    27481 aaaatttcta caagaatatc ttgtgctaaa aatttcaagt tcttttttca ttatttttcc
    27541 ttgtaaaatt cgacgacttc attaaaattt aagcgttgag tagaatattt tggttcgtgg
    27601 gctttatatc ctaaggataa aattacggca gtttcaaaag gataagttaa attaagaaaa
    27661 tcatcaacct tagctttttc aaagccacct atcatgcaag aatcaatacc taagctcatt
    27721 gcagctagtg acatttgcat catagcaaga tagcattgaa gttgtgcata atgatagagt
    27781 tcattatcat tcattgcatt ggttttatga gtataaattt ctaaaatttt ttgaaaattt
    27841 tcttcgctag aacctgagaa acgacgcact tgtttttgtg caaattcatc tttgctttga
    27901 agatcttttc ttgctagaaa aataatatta tgacttgcac ttgctacatt ttgttgattg
    27961 taacataggg ttgagagttt aagattgtgt tctttttgtt ctaatactac aaatttccaa
    28021 ggctcaaatc catgtgagct tggggctaag actccacttt ctaagataaa atgcaaatcc
    28081 ttttcattga tttttttatc attaaaaagt ttacaagctc tgcgttttga aattagttct
    28141 ttaaaattca ttttattcct taaaatcaaa aataataata ttaattataa aatgcaaagc
    28201 ttaatcaaaa aatattatag tttgatattt ttcttaaaaa caaaaccgga tttttcaaaa
    28261 cccatttttt ggatataaaa ttcatgagct tgtgttctaa aaaaacttga acttagttct
    28321 aattcttcat atccttgatc ttttgcccaa atttggattt ttttcaaaaa agcttgacct
    28381 ataccttttc ctcttaaagc ttcatctacg acaaaatcac aaatataaag acaatgatta
    28441 tgataaagta cattaaaggg catgactcca caagctgctt tgtagcttcc ctcattttca
    28501 taggcaaaaa gtttataatg ttgagtttgt gtagcaagtt ggattttgtc taaaaaatct
    28561 ttcaaagata ggttatttct taattgtttt atcaagggat aaattttttc caagtcttct
    28621 tttagcttaa tttctttcat ttttaaatcc cttaaatttc aaaaatttca ggttttaatt
    28681 ttaaaagtaa gcaaaaagtt gccaaaacag cttgttcttg cataaattca cgatctccat
    28741 ctaaataaag cgtttcttgg ataaaagttc catctctaaa cattgcacct atataaatag
    28801 tgcctgattt tatttttccc tcatcttttt cgccaactac tccgctaaca gctaaggcaa
    28861 aatcaggatt agctgtttta aaaatacctt ttagcataaa ataaacacaa cgttcactgt
    28921 attcgccatt attttctaag acgctttcgc taattccaag ccattcgtgt ttgatgcggt
    28981 tggaataact tacaatagaa ccttcaaaaa tttcacttac acctgaaatt ttggttaagg
    29041 tacttgcaca aagtccacct gtgcaacttt cagcaaaaga aatttttaat tttttttcta
    29101 aaagtttaga gcttataaaa tgtatgggat ctttacctaa aaataccttt tgtccaaaaa
    29161 gattttttac gctatttaaa aaaccatcaa gttttccaaa attagcgcaa gtggccttaa
    29221 taagcacaag attatctaaa agcttggttg attttatact tatctcataa gattttgtta
    29281 gggtttgcag tagcaatata gcgctttcat catccatgcc aaaaatgcaa aaatatgcaa
    29341 aatttaattt tatatgccca agaagattgg gtaatttttc gcttggattt attttaacga
    29401 cattaatttt tgaatttgaa aaattacaca caaagctatt tttactaaat tctgctttat
    29461 ctggaaccaa ggtatcatct tttaagataa gattatcatc atttaaagtt gctaaaattt
    29521 tagcaacagt cgcataatgt aaagagcttg taaataaagt gataaaatca tactgattta
    29581 agagattttc aagtaaaaaa ggtaaatctt tatcggtttt attttgtatg cgaatttcgt
    29641 tgatttcttt aaatttttct tcataagttc tataaatata atttttgaat ttttcgttta
    29701 tagtaagctc atctcctata agataaagca aatgtttcat aaattttcct ttttttctta
    29761 taattatagc caaaaacaaa gtagaaatta aagctaattt gagtagaatt taagattatt
    29821 aaaaattagg tggaaaaaat ggactacaaa gaaactctac ttttgcccag tactagtttt
    29881 gctatgcggg cgaatttagc ggaacttgaa ccgcaaagat ttaaaaaatg gtttgagcaa
    29941 aattatgctt atgaaaaaat gaaagaaaat cgcaaaaatg cgaaaaaaag ttttacctta
    30001 cacgatggcc ccccttatgc taacggacat atccatatag gacatgcttt aaataaaatt
    30061 ttaaaagaaa ctattatcaa aacgcattat tttaaaggtg agagtgtgcg ttttactcca
    30121 gggtgggatt gtcatggttt gcctatagaa caacaagcag aagtaaagct tggagaaaag
    30181 aaaaaaagct taagtaaaaa agaaattcgt gagttttgca gacaacatgc gagtgaattt
    30241 gtagatatcc aaagagaaga atttaaaaat ttaggcatta ttgcagattg ggataagcct
    30301 tatttaacta tgaaatttga gtttgaagca gcgatttata gaactttatg cgagattgct
    30361 aaaaaaggct tactttgcga gcgttctaag cctgtttttt ggagttgggc ggcaaagtca
    30421 gctttagcgg aagctgaagt agagtatcaa gataaagaag attattctat ctttgtggct
    30481 tttgatttag atgtaaaagc ttgcgaaaaa ttaggcgttt caaaagcaag cgcagtgata
    30541 tggacaacta cgccttggac tttggtggct aatcaagcta tagctttaaa tcctaatgaa
    30601 aattatgtga tcaccaaaga gggtttgatt tttgcaagtg ctttacttaa aagtatggta
    30661 gaaaaaggac ttacaagtgg agaaattcaa aaagaactaa acgcaaaaga atttgaaaaa
    30721 cttgaagcta tcaatccttt aaatggaaga aaatctgttt taattatggg cgagcatgta
    30781 ttgatggatg gtggaagtgg acttgtacat actgcaccag gacatggcga agatgattat
    30841 tatgcttgtt tgaaatatgg cattgaggtt ttaatgcctg ttgatgatag tggatgttat
    30901 gatgaaactt taagagctaa agggcttttg ccttctcatt tgcttgaaga gtttataggt
    30961 cttcatattt ttaaggccaa tgaaaaaatt ttagaacttt taggcgaaaa actgttacat
    31021 tcttctaaat ttatacactc ttatccattt tgttggagaa cgcataagcc tgtgatttat
    31081 agagctacta aacaatggtt tattttaatg gatgaaccaa aacttcaagg aaaaacttta
    31141 agagagtgtg caaaagaaca acttttaaaa acaacctttt atccgcaaag tggggtaaaa
    31201 agaataggtt ctatggtgga aaatcgccca gattggtgta tttcaagaca aagagactgg
    31261 ggaacgccta tagccttttt tagagataaa aacactaaag aagtgatttt tgatgatgag
    31321 ttttttgact ttgtagcagc tatctttgaa aaacatggcg ctgatgcgtg gtgggagttt
    31381 gaaatcaaag atttaattcc tacaaattca aaatacaacg ctgaaaattt agaaaaagta
    31441 tatgatattt tagatgtttg gtttgatagt ggaagtactt ttaatgcggt tttaaatagc
    31501 ggactttatg acacaggaga aaaaagagca agtatgtatt tagaaggaag cgatcaacat
    31561 cggggttggt ttcaaagctc tttgcttgta ggtacagcga tcaatgaaag tgcaccttat
    31621 gaaagcattt taactcatgg ttttaccacc gatgaaaaag ggcaaaaaat gtctaaatct
    31681 aaaggcaatg tgattgctcc tgaatatgta gcaaaaacct atggagttga aattttaaga
    31741 ctttggatac ttttaagtga ttattcaagt gatttaaaaa tttcagacaa tatcttaaaa
    31801 caagtaggcg aacaataccg caaaataaga aacactataa gatttttact tgccaatacc
    31861 aatgatttaa aagatttaaa agttaaagaa tttagtttta ttgataaatg gatattaagc
    31921 cgtgcaacta aagtttttaa agcaagcaaa gaggcatttt ttgcttatga atttgctaaa
    31981 ggttttagtt tgcttttaaa tttcttaagt gcggatttaa gtgggattta tcttgatatc
    32041 agtaaagata gactttattg tgatagcgaa aatgcccaaa gaagaaaatc tgctcaagtg
    32101 gctatggctt tgatagcaaa agagctttta aatttacttg ctccaaattt aagctatagt
    32161 gtagatgagg ctttagaaca tgctaatgtt ttaatcaaag gtgatgcaaa agatgtattt
    32221 gatctaagtt taactcagga ttttgattat gattttggta tagatgatac atttttaatg
    32281 agtgctagag agaaattttt tgaacagatt gatatactta aaaaagataa aatcattaaa
    32341 tctactttgg aattaaattt aaacatcagt tttaataaat tcccaaatga ggaattagcc
    32401 gattggttta tggtaagtca aatcagcaat gaaaatgaag aaattttggc tgaatttgaa
    32461 gtagagaatg agaaatttaa aatcaccaaa gcttcacttt gtaaatgccc aagatgttgg
    32521 aaacttcaaa gtaaagatga agaaacacct tgtttaagat gtgaagaagt tttaaaaggg
    32581 attcaatgct agaaaatcct attccaaata gcattatcat cacaactata gcggtggttt
    32641 tggcttttag tgctttagca gtatttttga tcaaaaaaac aaaggaaaat aaatgataac
    32701 tttaaaagaa gctttaaaat actccaaaga agaacttgaa aatttaaaaa aagaactcaa
    32761 tgaaaaagca aaaaaagaaa aaaaaatagg tgcttatatc gaacaatttt tagataaaga
    32821 cttaagtgtt tcaggtgaag gtgtgcctgt agctataaaa gataatatca gcgtaaaggg
    32881 ctgggagctt actagtgcga gtaagatttt acaaggttat atcgctcctt atgatgcaag
    32941 tgtgattgtt aatttaaaag ctaatggttt ttctcctttt gggcgttgca atatggatga
    33001 atttgctatg ggaagttcaa cagcgagttc ttattatggc aaaactttaa atcctttaaa
    33061 ttttgagcgt gtgccaggtg gttcaagtgg tggaagtgct gctgcggtag cgggtggctt
    33121 ggctttggca agtttgggtt ctgatacagg aggatctgta cgtcagcctg cagctttttg
    33181 tggttgcgta ggatttaaac cgagttatgg aagagtgagt cgctatggct tagcttctta
    33241 ttcttcaagt ttggatcaaa ttggggtttt aacgcaaaat gtagaagatg cggcaatttt
    33301 atatgatgcg atcgcaggat atgataaaat ggatagcacg agtgcaaata tcgagtttat
    33361 caaaaccgct ccaaatttaa atgcaaataa aaaattaaaa attgcagtga ttgaaaatta
    33421 tgtcaatgat gcagatagtg aagtaaaaaa cgcactttta aaaaccatag atatgttaaa
    33481 agctaatgga catgagattg tatataaaaa tttgcttgat tctaagtttg atatcgcagc
    33541 gtattatatc atcgcaacag ctgaagcaag tgcaaattta agtcgttatg atggggtgcg
    33601 ttatggcaag cgttctgaaa atatccaaaa tttaaaagaa atgtatgtaa atacacgcag
    33661 cgaaggtttt ggagaagaag taaaaagaag aattttgtta ggaacttttg ttttaagcag
    33721 tggatattat gatgcgtatt atattaaagc acaaaaagct agagctttta ttaaggtaaa
    33781 atatgaagaa attttgcaag attgtgatct tatttttatg cctgtaacgc ctacaacggc
    33841 ttttaaattt gatactcaaa aaagccctat gcaaacttat ttagaagatg tttatactat
    33901 ctctgtaaat ttagcaggac ttggaggcat tagtgtgcct gttgcaaaag ataaagaagg
    33961 gcttaatata tcagcacaac tgatttgcaa agcttatgat gaacaaacct tgttagatgg
    34021 ggctttaagt ttagaacaaa tgattaaaca ttaaggatga aagatgaaaa ttgtaaaaag
    34081 agctttaact tttgaagatg tattattgcg tcctgggtat tctgaagttt tacctaagga
    34141 agtaaaaatt cacactaaat taacaaaaaa tatcacttta aatatgcctt taatctctgc
    34201 ggctatggat acagttactg aacacagggc tgctattatg atggcaagac ttggagggct
    34261 tggagtgatt cataaaaaca tggatatagc ctcacaggtt agagaagtaa aaagagtgaa
    34321 aaaaagcgaa agcggggtga ttatcgatcc tatttttgta agtcctaagg caagtgttgc
    34381 ggaagcttta gaaattatgg cagagtatag aatttcaggt gttcctgtag tagatgaaga
    34441 taagaaacta ataggcatac tcaccaatcg tgatttaaga tttgagagtg atttttcaaa
    34501 tttggttgaa aatgttatga ctaaaatgcc tttaattact gctccaaagg gttgtacttt
    34561 agatgatgcg gaaaaaattt tcagcaccaa caaagtagaa aaacttccta tagttgatga
    34621 acaaggacgc ttggaaggac ttatcactat aaaagatctt aaaaaacgca aagaatatcc
    34681 tgatgccaat aaagataatt ttggaagatt acgcgtgggt gcggctatag gagtagggca
    34741 aatggatcgt gtgaatgctt tagttgaagc aggcgttgat gttgttgtgc ttgattctgc
    34801 gcatgggcat tctaagggta ttattgatac agtaaaagca attaaggcta aatatccaaa
    34861 tttagatctt atcgcaggaa atatcgccac tgcagctgca gcaaaagcac tttgtgaagc
    34921 aggagtagat gcggttaaag taggtattgg gccaggaagt atttgtacta cacgtattgt
    34981 ttcaggtgtg ggcgtgcctc aaatttcagc cattgatgag tgcgtggaag aagcaaataa
    35041 atttggcgtt cctgtgatag ctgatggcgg gattaaatat tcaggtgata tcgcaaaagc
    35101 tttagctgta ggtgcgagtt ctgttatgat aggatcgctt ttagctggaa cggatgagag
    35161 tccaggagag ctttttactt atcaaggaag acaatataag tcttatcgtg gtatgggctc
    35221 acttggggct atgcaaaagg gaagttcgga tagatatttt cagcaaggta ctgctcaaga
    35281 taaactcgtt cctgaaggta tagaagggcg tgttccttat gtgggaagta taagaagcgt
    35341 ggtgcatcaa cttttaggag gtttgcgttc ttctatgggt tatgttgggg ctaaagatat
    35401 agaagatttt caaaaaagag ccgaatttgt tgaaattacc actgcagggc ttaaagaaag
    35461 tcacgtgcat gatgttacta tcactcatga agcaccaaac tacaaggtta atcatcaatg
    35521 agttttgaag aaaatttaaa acacgctaat gaatctttgg aaaaattaaa taatcaagag
    35581 cttgccttag atgaaagtgt aaaaatttat aaagaaggtt tagagagtat caaaaaagca
    35641 agacttgagc ttgaaaaagc aaaattagaa gtggagcaaa tcgatgagta aaatagcagc
    35701 tttacagttt ccaactttag ctttaagtga atcaaggctt gattattatc ttaaagcttc
    35761 aaaagacaat ggagtaaatt tagtagtttt gggagaatat gtgatcaaca gtttttttac
    35821 agaacttttg catatgccaa aaaatatgat aaaagaacaa agcgaagcta aaaaagaaag
    35881 cttgattaaa cttgctaaaa aatacgaatt agaaattatc gctccttatg taagcgttga
    35941 agctaaaagt tataaaaaac tttgcttaaa agttactcca aatggtgtga aaagttatga
    36001 acagcaaatt ttaatgcctt atgaacattg gaatgaagaa aaatttttca gcaacaaaac
    36061 tccatcagaa ttaaaaattt ttacttttaa ttatgaaaaa ttaaaatgtg ctttgctttt
    36121 tggttttgag acacattttg atattttttg gcaacagatt atggcgaaaa aaattgattt
    36181 ggttatcgtt cctagtgctt gtacctttga aagcaaacaa agatgggaag aacttttaaa
    36241 aacaagagct tttttaaatt ctacaagcat tttaagagta aatcgcatag gcaaaacaaa
    36301 agatgagtgg aatttttacg gcgatacttt gtttattaat gcttttggtg agatagaaag
    36361 taaattgggt tctgaagaag aaatgcttat tatagagcct aaaaaaagtg atgaagcaag
    36421 aaaactttgg ggttttgata agataataaa agaatttaaa aattaaattt atacttatag
    36481 atttataagt ttataaaagt tatctagagc tgatagaagc taaggtttat attttctttt
    36541 tagtaaaaaa gtgctaaaat ttagccttta aagtataaag gtttaaatga tgcaaaatat
    36601 ccattttatc ggcataggcg gtataggaat ttccgcttta gcaagatttt taaaagaaaa
    36661 aggttttaaa attagcggaa gtgatcttaa agagagtaaa atcactaaag aactagaaaa
    36721 agaaggggtt aaggtcagta tccctcatca taaagacaat attttaaaca aagatttagt
    36781 tatttattct gctgctatca aagaagaaaa tcctgaattt aaacacgcta aagaattagg
    36841 cattaaatgc ctttcacgca aggaggcctt acctcttatc ttagaagata agcgcgtttt
    36901 tgcagttgca ggagcacatg gaaaaagcac aacttcaagt attttggctt ctttgcttgg
    36961 tgatgcttct gtgatcatcg gagcgatttt aaaagaattt ggttcaaata tgatttataa
    37021 agaaagccaa aaccttgttt ttgaagctga tgagagcgat agttcttttt taaattcaaa
    37081 tccttatttg gctatagtta ctaatgcaga agcagagcat ttagatcatt atggcaatga
    37141 agtttcaaaa ctccatcatg cttatgcgga gtttttagat acggctaaaa ttcgcgtgat
    37201 taatgctgaa gatgagtttt tgaaaaatta taaaaatgag tcaaccaagc tttatccgag
    37261 caaagatatc aaaaactgca ccatgcgtat agaaaatttc aaacctttta caagctttga
    37321 gttgaaaaat ttaggtgaat ttaaggtttt tggcatggga tatcatttag cccttgatgc
    37381 gtctttggcg attttggcgg ctttaaattt cttagatata gaaacgataa gaactaggct
    37441 taaaaattat caaggtatta aaaagcgttt tgatatttta catgctgatg aaaatttggt
    37501 tttaatcgat gattatggtc atcatcccac cgaaataaaa gcgactttaa gtgcagcaca
    37561 acaatacgca aaattaggcg gatataagaa aatcacagct atctttgaac cccaccgcta
    37621 cacgcgtttg gctgcaaatt taaaggaatt tgcaaaggct tttgaaggtg tagacgagct
    37681 tataatttta cctgtttata ctgcaggaga agagcctata gggcttgatt tagaagcggt
    37741 ttttcctaag gctttatttg tagaagatat caaaagagag ggtaaatttt tggtagcttc
    37801 taaggggcaa gtttttgaag aagggcttat tataggtttt ggtgcaggag atatcagtaa
    37861 taaattaagg caaaaaaatg agtaggtttt ttttatattt tttaattatt ttaattttag
    37921 ccttaatcac ttttgctttg cgtgaaaaat taggcaaaaa aactaaacct ttttttggta
    37981 ttttacttgt gatttttatt gttttagcgg tattttttga atttgaaaac acgcaaaaaa
    38041 gtcatttaag aacagatatt atcgtagctt ttaatcaaaa taaaaatatt ttatgtaaag
    38101 atatcaatgt ttctaaggcg tattttaatt atgaatttgg tacaggaagt tttatttcaa
    38161 aggataataa tcaaagtttt aattctttaa tcatagatat taaagattgt aggttaaatg
    38221 atgaatgata caaaagaaga attgatctca aagcttgatt taaacagcta tttagaagag
    38281 tttaaagccc tttttgcaag agataaggag atttttttgc aaggagattc taatcttcat
    38341 tttaaacgta tacatgagct ttgcgaggtg gaatttccta ctataccaga gcttagcaat
    38401 cttgataaag ccttggttca tttaagtaag caaggaattt tgcatttaga tgaaattttt
    38461 gaatttgtaa aaatttttcg ttattttgaa aagttaaaaa aaataaaact aggaacaaat
    38521 ttagactctt ggctacaaaa gatagaattt gttagcgggg ctttggagct ttgtttgaat
    38581 ttcgatgaaa aaggggagtt aaaagaaagt ttagatgaaa gacttgtaaa tcttaatgcc
    38641 gctctaagat taaaaaatga aagcataata gctgagttta agaaattttg ctatacaaaa
    38701 gctttaatgc cttatcttat cgatacacaa atccatctta taaacaatct tgaagccttg
    38761 cttgtaagag gcgggtttaa tcacgctatt aaagcaaaaa tcataggcag aagtaatggc
    38821 ggtggctttt atatcgtgcc tttaagtgtt gaaaatttgc aaaatgatat agaaaaaatc
    38881 aaaaatcaaa aagaagaaat ttattatgaa tacgctaaaa atttctcagc ttttttagta
    38941 aaaaatctac cttttttaaa atttatcaat acagcctttg atctttttga tcattatagt
    39001 gctagggttt tgcttgctaa aaaaagggat tttgaatttg ttttgtgtga tcaaagtacg
    39061 gatttagtgc ttaaaaattt tgctcatcct gccttaaaaa atccaaaaag cgtgagtttg
    39121 gaatttaaaa aacaagtttt aatcatcaca ggggtaaatg caggcggaaa atccatgctt
    39181 ttaaaatcca tgctaagcgc agcattttta gctaaacatc ttttgcctat gcatataaaa
    39241 gcaagtgaaa gtaaaatcgg tacttttaaa gaatttgatg ccatcataga agatccgcaa
    39301 aatgttaaaa acgacatttc aacttttgca ggaagaatgt tgcatttttc tagacttttt
    39361 tctaggaaaa atttgctttt aggtatcgat gaaatagagc ttggaacaga ttttgaagaa
    39421 gcggcttgtt tgtatagtgt gttaatttca aaactcatag ctaataatct taaaatcatc
    39481 attactacac accacaaacg ccttgccatg cttttagcaa agaatgagca agttgaactc
    39541 atcgctgcct tatatgatga agagctttca cgcccaaaat acgagttttt aaaaggcacc
    39601 ataggaaaat cttatgcctt tgaaaccgct ttgcgttatc agattccgcc gaatttagtt
    39661 agcgaggcta aaaagcttta tggcgaggat aaagaaaatt tagaagagct tgtgggtaaa
    39721 aatatcaatc ttgaattaga actaaaagct aagcttgaaa atgtcgagaa aaaagagcaa
    39781 aaagtcgatg aaattttact ttccttaaaa gagcaaaaag aaaaaaatga acaagaattt
    39841 cgtacgagtt tgagaaattt agaatttaaa tttcacaaag ccatagaaga agctaaaaaa
    39901 accatacagc ttaaagatat aaaagacaag caaagaagtc ttaataaagc caatgaactt
    39961 aaaaaagaaa tcatcttgcc aagtatggag caaaacgaag aattgcgtgt gggggatttt
    40021 gtaaaatatg aaaaaattaa gggtaaaatc ataagcattt ctaaaaacga tgctatggtt
    40081 gaaagtgatg ggatcaaact tcgtgtgcct ttaaaactgc ttaaaaaaag cactcctaca
    40141 tctaaaataa gtccaaaaac aagcattagt gtggcaaaac cgactaatct tagtgttagc
    40201 ttggatttgc acgggcttag gagtgatgaa gctatttcaa ggcttgataa atttatttca
    40261 gatgctttgc ttgcaggctt tgatgaagtt ttagtttacc atggtatagg agcaggaaag
    40321 cttgcctttg ctgtaagaga gtttttgaaa actcataaaa gtgtcaaggg ctttaatgac
    40381 gcaccgatca atcaaggtgg ctttggtgct aaggtggtaa gattataagg aaataaatga
    40441 ttacaaaaga taatttaaaa caagttttag aaaacttagg ctttaaaaat aaaaatgaaa
    40501 attatgtaaa aacaatcaat aattacactc ttttaataga ttataaaaac caaagtatta
    40561 attatccaaa agaaataaaa attcacgata aaactacttc taatttttca caccctgaaa
    40621 attttgtagt ttttgaatgt gtgcatagac ttttagaaaa aggttataag gctgaacatt
    40681 tagagttaga gccaaaatgg aatcttggca gggataaaaa aggtggtaag gctgatattt
    40741 tagtaaagga taatgaaaac aatccttatt tgattataga atgtaaaacc acagattcta
    40801 aaaatagtga atttataaaa gaatggaata gaatgcaaga agatggcgga cagctttttt
    40861 cttattttca gcaagaaaaa ggtgtaaaat atctttgtct ttatacaagt gattttagcg
    40921 ataagttaga atataaaaat tacatcatac aagcttacga taacgaagaa tatctaaaag
    40981 aaaaggaatt gcaaaattct tataaaaaat ctaataacaa tatagaactt tttaaaactt
    41041 ggaaagaaag ttatgaactg caatatttta aacaaggtat ttttgaagca aatgtcaatg
    41101 cctataaaat tttagaaatt actccaactt ttgataatct taaagaactt aaagaagaag
    41161 gcaaatatca cgaatttgca aaaattttac gcaagcataa tatatcaggc aaggaaaatg
    41221 cctttgataa acttgtaaat atttttcttt gcaaaattta tgatgaaact tttaataaaa
    41281 acaatctcaa atttggatat tttggtgtaa tggcagatac ttatgcaaat atgcaagata
    41341 gattaatgtg gctttataaa gaagctatga aagaattctt aggagagaaa attacctttg
    41401 tatctaatga agatatagaa aaagacttta agcaattaaa gataaaaact ttaaaagaag
    41461 taatgcaaaa ttacatcaaa gaattaaaat tttattcaaa taatgatttt gcatttttag
    41521 aagtgcataa taaagaatta ttcttaaaaa atgcacttgt attaaaagaa atagtagagc
    41581 tttttgcaaa ttacaagctt actcaaaact ctacaaatca atttttaggc aatctttttg
    41641 aacttttttt gcaaaaaggt atgaagcaag acgaaggtca gttttttacc cctattcaaa
    41701 tttgtgaatt tattatgtat tctttaccgc ttcacgaaat gttaagcaaa aactctaaag
    41761 ctttaagggt ggttgattat gcttgtggtg ctggacattt tttaaacacc tatgccaatg
    41821 agcttaagcg ttatctaaca gaagatgagc ttaaagagca ttataaaaat atttatggta
    41881 ttgaaaaaga gtatcgctta agtaaggttt ctaaggtatc aagtgcaatg tatgggcaaa
    41941 atgaaatcaa tattttatac gctgatgcac ttgcttcttt tgaattagca aatacaaata
    42001 atttagaagg agaaaaagca aaaccacaaa tagaatcaaa tagttttgat ttgcttatag
    42061 caaatccgcc ttattctgta aaaggatttt tagaaacttt aagtgataaa tctaaaaata
    42121 cttataaact tttcaacgat gatataaaca tagaaacaaa taattctatc gaatgctttt
    42181 tttgtgagcg agcaaatcaa attttaaatg ataatgctaa agctgctatt atcttaccaa
    42241 gttctatttt aaataaagat tctatttata aaaatacaag agaaatatta tttcaaaatt
    42301 ttgattttat tgccattgta gagctaggta atcaaacatt tggagcaaca gggacaaata
    42361 cgattatttt atttttacgc aaaaaagaaa cttttaaaca agaaaatcat cttatttctc
    42421 aagattatag tttgattaaa gaacgcatag aagctgaaaa tttaaaagac aatgaaagct
    42481 tttatcaaaa ttatctaagt gcgtattgtg attttagaaa atttgataaa gagctttata
    42541 gcaatttttt aaatggaaac ttagattcta aactcacaga gctagaagcc tttaaagatt
    42601 atcgcaatgc atttaggcaa acaagtgatt ataaaaaact taaagaatct aaaatttata
    42661 aagaaagtaa agataagcaa gatttagaag ataaagcctt tttagcttat gctcaggcaa
    42721 tagaaaagga taaattgctt tattttagtc taagtcttaa tcaagaagtt ttaatcataa
    42781 aatccccaag tgatataaaa gaacaaaaga aatttttagg ttatgagtgg agtaatagaa
    42841 aaggtgatga aggtttaaaa gaattgcacg agccttattt gagcccactt tttgaaagag
    42901 gcaatccaca aaatgagacc aagcttaata ctttaatcta caaatctttt ttaaatacgc
    42961 ttgatgttat cccgcaagaa ttgcagattt atgctacaaa agcaaggctt attgatatga
    43021 tggattttga aaaagtggaa tttaataaag ctataagttt aaatccaaaa actcaaagag
    43081 aagaaataaa gtctcaatac ccattggtta aattgaaaat ttgtggagat tttttcatgg
    43141 gaggaacacc atcaagaaaa aatataaatt attggaatgg ggatattaag tggctaacaa
    43201 ttagcgatta ctctaatcgt caagttatta tggatactaa agaaaaaatt acaagagagg
    43261 gttttaagaa ttctaatgca aaaatgatac aaaaaggtgc tgttgttgtt tcaatttatg
    43321 caactattgg tagagttgga atattaggcg aagatatgac aacaaatcaa gctatagtag
    43381 ctattattcc aaatgaagaa tttataaata aatatcttat gtatgctatt gattatttta
    43441 aatttcaatt atataacgaa gttattacaa cttcgcaaca aaatataaat ttaggaatct
    43501 tgcaaaatat ggttattcca aaaccaccgc ttgaaattca aaaacaaatc gtagcagagt
    43561 gtgaaaagat agaagagcag tataatactt taagtttgag tataaaagag tatcaaaacc
    43621 taatcaaagc aatgcttcaa aaatgtggta ttatagagga caatcaagaa tatgaactaa
    43681 attctatttt agataaaatt aataatttat gtaaaataaa tttggatagt gaatttttat
    43741 catcatttaa taaaacaatt aaagaatatg ctttatcaaa tccaattttt aaactaagta
    43801 ttggaaaaag agttttaaat aatgagctgc ttgaaaatgg acaaattcct gtttatagtg
    43861 caaatgtgtt ggaagtattt ggatttgtta ataaagaaat tttgcaagat tatgataatg
    43921 attctgtttt gtggggtata gatggagatt ggatggtggg atttatacca aaaaataaaa
    43981 agttttatcc aactgatcat tgtgggggta ttaagggttg atgatacaaa aataaatgct
    44041 aaatacataa gttttatttt aaatgaagct ggtaaaaaac aaggattttc aagaaaactt
    44101 agagcttcaa tagatagaat aaaagcatta agagttaaac ttccttcttt agaatttcaa
    44161 gatcaaatag cagatataac tgacaagatt gagaaaaaaa tcaatgaata taaaatagaa
    44221 cttgatagat tagaaaaaga aaaagaaaaa atcttgcaaa aatatttatt ttcttaaagc
    44281 atttttcgct aaactttgta aattttataa ggtttagcga tgaaaaacat tatgatatta
    44341 agcggagcgg gtttgtctgc tccaagtggg cttaaaactt ttagagataa tgatggactt
    44401 tgggaagaat acgatgtgat ggaggtttgc tctgcaacag gttttagaaa aaatcctaaa
    44461 aaagtacttg atttttacga tgcaagaagg gcacaacttc aaaatgtaaa gccaaatcac
    44521 gcccatgaaa aaatcgcaca gttaaaagaa aaatggggta aaaacctttt tgtcatcacg
    44581 caaaatgtag atgatttgct agagcgtgca gggtgtaaag atgtagtaca tttgcatggc
    44641 tttttgcccg aacttcgttg cctaaaatgt gaaggaattt ttaatatagg ctatgaaaaa
    44701 ttcacagata aacaatgccc aaaatgcaaa agtaaggatt taagacacaa tatagtcatg
    44761 tttgaagagc aagctcctgc ttatgctacg ctttattctt tacttcatca aacttcatta
    44821 tttattagca taggcacaag tggggcggtt ttgcctgtgg ggcagtatgc ttcaatgtgt
    44881 gaaaaaagta ttttaaatat ttatgaaaaa gatgtgaatt tagagcgata ttttgataaa
    44941 atctatatag aagatattat aagcgctatt gataaaatcg cacttgatat agaaaatttt
    45001 atgaaagatg gtaatgtttg attctttttt aagtggagtt tttttgggct ttggagtgag
    45061 tgtgcctttt ggacctgtaa atattttgat tttaacttat gcactaaaag cttttaaaaa
    45121 ttccatagct gtaggacttg gagcatttag tatagatatg ctttatcttt ttttgcttca
    45181 atttgggctt ttaaatttct tagacaatgt catttttatg cgttttttgg cgatttttgg
    45241 tttttgtttt ttaacttata tggcgtattt gatgctaaga aaaaagaaag aaagcttaaa
    45301 tttagagcat aaagaattta aagaaagtct tttgaaaagt tatattaaag gagctttttt
    45361 aaatggttca aatccttttg tgataggatt ttggcttagt gctgcaagtg tggttttaag
    45421 cagcgatcat gcttatttga tgactttagg acttgttgtg gctatacttt tttgggtaag
    45481 tgctttagcc tttgtggtgg caagatatag ttatgttttt agtgcaaaag ttgtttttat
    45541 aatcaatata atttcagcta taattataga gtattttgct cttaatttat tatataaaac
    45601 tttcttagga taaaaaatga atgcaaaaga atttttaatc gaacttttaa aatttaaatc
    45661 tgttacgcca aatgatgatg gagctttaaa tttcatcgct atggaactga gtgattttga
    45721 agcttttttc atagaaaaag aaggcattaa aaacctttta ctcactaaaa aatttaaaga
    45781 tgaaggcgag catttagctt ttggtgggca tgtagatgtg gtgcctgcag gcgagggttg
    45841 gagtagcgat gctttcgtgc ctatggaaaa agaaggcttt atctatgcaa ggggtgctca
    45901 agatatgaaa agcggagtag cagcctttgt agatgcggca aagaatgtag attttaaagg
    45961 agcaagactg agtcttattt taacaagtga tgaagaaggt gaagctatat atggaactaa
    46021 ggctgtttta gaatggatgc aagaaagaga tatgttacct gattatgctg tggttgccga
    46081 gccaacctgt gttaaaaaaa tcggcgatag tattaaaata gggcgtcgtg gttctatcaa
    46141 tggaaaactt ttaatccgtg gaaaacaagg gcatgttgct tatcctgaaa aatgtatcaa
    46201 tcctgtgcat gattttgcac cagttttaaa gcttttagcg ggttttgatc tcgatccagg
    46261 tagtgctgaa tttagtcctt caaaaattgt tattaccgat attcgcggag gtatgggggt
    46321 gtgtaatgtt acgccaaatg atttaaaact tatgtttaat gttcgcaatt cccctgatac
    46381 aagcttagaa gatgtaaaaa gttatgtaga aaaaatttgt catggtttaa actatgagtt
    46441 agagctaaaa caatcaagcg aagctttttt gacaaatatc gataataaaa tcgttcaaaa
    46501 aatgaatgaa agcgttcaaa aaatcactca tgaagtgcca gagcttaata ctaaaggcgg
    46561 cacaagtgat gcaaggtatt ttgcaaaata tggtgtaaaa gtagtggaat ttggggtttg
    46621 taatgataga attcacgcta ttgatgaaag agtaagcata gaagaatttg aaaaactttg
    46681 ccttgttttt aaagacttga tagaaaattt ttaaaggttt aggatgattg aggaaatttt
    46741 aaaagatagt gattacaagc tagatctatt tagtaaaaaa gctattgctg aattggaaac
    46801 taaaattata gctaaaacaa acaaaaataa ccaaattata tactatacta attgccttat
    46861 ccgcgataaa gaaattaaac ttacgccaga agaaattgtg cgtcagcttt atatcgataa
    46921 gcttttaaat gaatataact atcctaaaga tatgataaaa attgaatttg gtgtgcattt
    46981 tggacgcgaa gtaaaaaggg ctgatattgt gataattgat aaaatccaaa tcacagtccc
    47041 atacatcatt atagaagtaa aaaagccaaa gttgaaagat agcaaagaac aattaaaaag
    47101 ttattgtaat gctacaggtg caactatggc tgtgtggtgt aatggtaaag aaattagcta
    47161 ttatcataga aaagatccaa attattttga atctattcca aatattcctg catcaaacca
    47221 gacattaccg gatctgttga aagtaaaaat tacctttgat gatttgatta aagaagatat
    47281 tttaaaaagt caaaagcgaa gtttaaagaa tttagttaca gaaatggaag atgaggtgtt
    47341 ggcaaatgct ggagttgatg tatttgaaga atgttttaag cttatattta taaaactttt
    47401 tgatgagcta gagggtgcaa gagatagaac aaagagctta gagtttagaa attatggaga
    47461 gtctgattct gaacttaagc aaaaaataga aaaactcttt gataaagcaa agaaaaaatg
    47521 ggaaggtgta tttaataatg atgagaaaat taaactttct ccttcgcacc taagtgtatg
    47581 tgtatcatca ttgcaaaatg taaagttatt taactcaaat ttagaagtga ttgatgatgc
    47641 ttttgaatat ctagtgaata aatcctcaaa aggtgaaaaa gggcaatatt ttactccgcg
    47701 ttatgtaata gatatgtgtg taaaaatgct aaatcccaaa aaagatgaaa gtatgataga
    47761 tactgcaagt ggaagttgtg gatttccgat acatacttgt ttttatgtgt ggcgttcaat
    47821 ttataaagaa agaggcatag aagcaagtca tctctttaca gcccaagaaa agatttctga
    47881 gtgtcaagat tatgtaaaag aaaaagtgtt tggtatagat tttgatgaaa agagtgtgcg
    47941 cgtatcaaaa atgcttaatc taattgcagg tgatgggcat acaaatgttt tgtatttaaa
    48001 ttccattgac tttgatagat gggatgagtg ggtaaaagat gatgaagatt ggcaagatgt
    48061 gtattttgaa ggttttaaac gcttaaaaaa tttaagagta actaaaaatc aaaataggga
    48121 ttttaatttt gatgttttaa tggcaaatcc gccttttgca ggagatataa aagagagtag
    48181 aattttagct agatatgagc taggcaaaaa agaaaatggc aaacctcaaa gtaaggtagg
    48241 aagagatatt ttatttatcg aacgaaattt agatatgtta aagcctggtg gtagaatggc
    48301 tattgtattg ccacaagggc gttttaataa ttcaagcgat aaatatataa gagaatttat
    48361 cgcacaaaaa gctagaatct tagcggttgt aggacttcat ggaaatgtct ttaaaccaca
    48421 cacggggaca aaaacaagtg ttttattttt acaaaaatgg gatgataaat tatgtccaaa
    48481 gtgtgaggac tataatatct tctttgctac tatgaatgag cctagtaaag ataattcagg
    48541 cgaaaagatt tattacccac ttttagattc tcatgatcat ttagtagtaa aacatgattt
    48601 atttcatccg catttagaag gagatgagcc tataaaacaa aaagatgaaa gccaagaaga
    48661 gtttgacaaa agaatacaag aatatagatt aaatgtagaa aaatataaag acttgcaaaa
    48721 agatggcata gctgaagctt ttattgaatt tgcaaaagca gaaaatttga gtttttggaa
    48781 agaataagtg aatggataat atgaaagaat ttaaaatttt ttgcgatgaa agcaatcatt
    48841 tattttacaa agataatcca actttgtgtt caaaggttat ggtattagga gcgcttaaag
    48901 ttccatcatc tgaaattatt aaaattaata aa
//
LOCUS       DARGEY010000004        36854 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.004, whole genome shotgun sequence.
ACCESSION   DARGEY010000004 DARGEY010000000
VERSION     DARGEY010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 36854)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36854)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36854
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.004"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            48..1454
                     /gene="aspA"
                     /locus_tag="SF008_000208"
     CDS             48..1454
                     /gene="aspA"
                     /locus_tag="SF008_000208"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HEG8232520.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPR
                     FVRALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYFVIGADVTVTFACEGGQLQLNVFEPVVAYSLFNSVVMLEKAMYTLADKCIDGIT
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLSKEQI
                     DEILTPSNMLNPHMEAKK"
     gene            1471..2808
                     /locus_tag="SF008_000209"
     CDS             1471..2808
                     /locus_tag="SF008_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEG8232521.1"
                     /translation="MDIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVILGLVLGM
                     KPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWLL
                     TILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSGV
                     LEPLGWNYPTLIGIWISTTFVACMLTAFIVSLITPMDLSKDSVYQERLKAGLVKDAGA
                     ILHGEDKPGAKLSVVIFLITVLAVVLYATAISSNIKWIDPVVVPRDAAIMSFLLTAAT
                     LITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQT
                     PAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALFV
                     LPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVALGFVLAPMLI"
     gene            2916..4277
                     /locus_tag="SF008_000210"
     CDS             2916..4277
                     /locus_tag="SF008_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3014 family protein"
                     /protein_id="HEG8232522.1"
                     /translation="MKIKVGLIFSGIACLFLTACVNQVKQNTTFENTLTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAVEESYKYDVDLENVSPKAA
                     KFIGTTLLNDNIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRALMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEAQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKAADLFREVSIIYPKNKTIKKEAKIFKEYATKIKVKKAKKYVFVVY
                     ENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREASFANLNINGQNTNDFVDLDN
                     IVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGGWLSLATAVATAATNKADVR
                     SWRGLPKSIAIATIENDGNLEIKDPQGNILFQKSLDKNKNALVIVRSFAPYLPASVAI
                     MEK"
     gene            4287..4655
                     /locus_tag="SF008_000211"
     CDS             4287..4655
                     /locus_tag="SF008_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HEG8232523.1"
                     /translation="MKKNILFILMFLLSACAPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKLVSDTRAKEFRLEIKAKN"
     gene            4679..5302
                     /gene="lpoB"
                     /locus_tag="SF008_000212"
     CDS             4679..5302
                     /gene="lpoB"
                     /locus_tag="SF008_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HEG8232524.1"
                     /translation="MKKTKILGTALIGALLFSGCAQTAYTDGKASQIKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAAGGALDSMSEDVRELRDNDEFNQKTIAKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKSVTW"
     gene            5385..6722
                     /locus_tag="SF008_000213"
     CDS             5385..6722
                     /locus_tag="SF008_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232525.1"
                     /translation="MKKILFIGSLVMASLLYAQGSQPVEITQQDINTQNEMSDASTKD
                     ITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKSTVAVNDTDPQFAQALQNAYQKAM
                     LNLQSEFIRDAFGRIATSKIQNYEADNSTNAKEFDELPKGDKVDQILNKLTQLAGAQL
                     DKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQRRGEYDV
                     GVIAVISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRLVYDENGA
                     PIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLKDERTTGD
                     TYEEIIKQSINVNDSSTQEQTQNVTNIIDKVNSKIKASASGKIRGIRTLKKWSYTSEN
                     GIEHVGAVRFYSYENLTNTNEALNSKSNATKNEAKKSSSIQRSSNVVNSMDDF"
     gene            6732..7934
                     /locus_tag="SF008_000214"
     CDS             6732..7934
                     /locus_tag="SF008_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232526.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVITTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSGVSINSLKKSNTSVSTDNSGSNIQDNYSEQISKATKGRADTYEINSV
                     EQDTNGKYTVNVTIFKTTTTKKYQAPGLSADNRRSITVFDSTPDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDFSGYYEMEKALIKSGDAASDEVYKLKNVLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSLSANEAALK
                     QIANRIAGDILNAIYPLKVASVENNEVVFSQSLNQGDVYECFALGKVIKDTYTKENTG
                     RVESKTGSIEITRTSPKLSYAKITEGSVKVGDICRPLIGSNSGNGYTIGRDANYQTQE
                     GGGVNLGF"
     gene            8093..8401
                     /gene="rplU"
                     /locus_tag="SF008_000215"
     CDS             8093..8401
                     /gene="rplU"
                     /locus_tag="SF008_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEG8232527.1"
                     /translation="MYAIIKHSGKQYKVSVGNELKLDHFEAESKANIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            8412..8666
                     /gene="rpmA"
                     /locus_tag="SF008_000216"
     CDS             8412..8666
                     /gene="rpmA"
                     /locus_tag="SF008_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEG8232528.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            8773..9810
                     /gene="obgE"
                     /locus_tag="SF008_000217"
     CDS             8773..9810
                     /gene="obgE"
                     /locus_tag="SF008_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEG8232529.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDVQTNE
                     ILLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVDEYNSFVMADIPGIIE
                     GASGGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSVNLGEEFAEQITLNINELENYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKTLRNNK"
     gene            9933..10688
                     /gene="proB"
                     /locus_tag="SF008_000218"
     CDS             9933..10688
                     /gene="proB"
                     /locus_tag="SF008_000218"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEG8232530.1"
                     /translation="MKRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVT
                     SAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFD
                     SRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVI
                     LSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL
                     EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            10762..11679
                     /locus_tag="SF008_000219"
     CDS             10762..11679
                     /locus_tag="SF008_000219"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEG8232531.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTPSDTKAFLSQNYPSIPIFTPSSLKDKNIIREIKDLNPDFIVVAAYGKILPKAILDL
                     APCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAILESLECDIKDK
                     NSSEVFELLANLAAKLILSTLLNFDKITPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNAKMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            11642..12295
                     /locus_tag="SF008_000220"
     CDS             11642..12295
                     /locus_tag="SF008_000220"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEG8232532.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCKQIRNGKIDENFAIYALEQIN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKEVLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFAPQNTALCDIEISLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            12292..13077
                     /locus_tag="SF008_000221"
     CDS             12292..13077
                     /locus_tag="SF008_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEG8232533.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSVAYQNLAYSILG"
     gene            13083..13919
                     /locus_tag="SF008_000222"
     CDS             13083..13919
                     /locus_tag="SF008_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEG8232534.1"
                     /translation="MGLNKDRGLSSLISDMDTVYSKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIADIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLDQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQILNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KF"
     gene            13980..14405
                     /locus_tag="SF008_000223"
     CDS             13980..14405
                     /locus_tag="SF008_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HEG8232535.1"
                     /translation="MFEDMHPSIMLATIAIFLAMIVILNSMLYKPLLKFMDERNDSIK
                     NDENKVKENSQEVLCVNDELEVIHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELE
                     RKMASFYADLAIQKKELQEHLNIHLPELKQALQNNIKKI"
     gene            14416..14928
                     /locus_tag="SF008_000224"
     CDS             14416..14928
                     /locus_tag="SF008_000224"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEG8232536.1"
                     /translation="MSKLLFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVGILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVENIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            14931..15452
                     /locus_tag="SF008_000225"
     CDS             14931..15452
                     /locus_tag="SF008_000225"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEG8232537.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSAFVLPKFKNIIES
                     NEIKKERKMEFLDSFFDIKNSSFQNFLRLLIENSRLECIPQIVKELERQKAFKENIFV
                     GIVYSKEKLSQENLKDLEVKLNKKFDANIKLNNKISQDDSVKIELEELGYELSFSMKA
                     LQNKLNEYILKII"
     gene            15466..16971
                     /gene="atpA"
                     /locus_tag="SF008_000226"
     CDS             15466..16971
                     /gene="atpA"
                     /locus_tag="SF008_000226"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEG8232538.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFENGDKGMALNLEESSVGIVILGKGEGLKEGASVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINANEYRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQRGQGVICIYVAIGQKQSTVAQVVKRLEEHGAM
                     EYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIKEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            16980..17864
                     /locus_tag="SF008_000227"
     CDS             16980..17864
                     /locus_tag="SF008_000227"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEG8232539.1"
                     /translation="MSNLKEIKRKIKSVHNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISFQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKTVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLEDLMKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            17889..19286
                     /gene="atpD"
                     /locus_tag="SF008_000228"
     CDS             17889..19286
                     /gene="atpD"
                     /locus_tag="SF008_000228"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEG8232540.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            19290..19679
                     /locus_tag="SF008_000229"
     CDS             19290..19679
                     /locus_tag="SF008_000229"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEG8232541.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHAALVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQA
                     KDLIKSMSSDNAALAATFSKLDNVRMH"
     gene            19679..20233
                     /locus_tag="SF008_000230"
     CDS             19679..20233
                     /locus_tag="SF008_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG8232542.1"
                     /translation="MNFEAIFYFFNSSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLETLLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            20242..20631
                     /locus_tag="SF008_000231"
     CDS             20242..20631
                     /locus_tag="SF008_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HEG8232543.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSAPTVKSLIISINAKKEIFLNQEKYDFISFADNIAQRKAQFNTEDPVFIRADK
                     SLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            20634..21413
                     /locus_tag="SF008_000232"
     CDS             20634..21413
                     /locus_tag="SF008_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HEG8232544.1"
                     /translation="MKNYGLSNLNSFLLALAIYISIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKPTEQVDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSAKSGASSAPKPQASELVKQLNDSLLQEESSTQGESTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLESQKGKFITYPPQNKNISITMNLRDEAKVKND"
     gene            21423..22631
                     /gene="tolB"
                     /locus_tag="SF008_000233"
     CDS             21423..22631
                     /gene="tolB"
                     /locus_tag="SF008_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HEG8232545.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANATETSNYTFEYTLNKNGNTLSLNVKIKAGGSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVSVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQAGVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
     gene            22708..23205
                     /gene="pal"
                     /locus_tag="SF008_000234"
     CDS             22708..23205
                     /gene="pal"
                     /locus_tag="SF008_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HEG8232546.1"
                     /translation="MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            23209..24156
                     /locus_tag="SF008_000235"
     CDS             23209..24156
                     /locus_tag="SF008_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEG8232547.1"
                     /translation="MKKIFTVALLGATLLYAESSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSFLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            24171..24740
                     /locus_tag="SF008_000236"
     CDS             24171..24740
                     /locus_tag="SF008_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG8232548.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIVDARVASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGHGGGGCCGGSGCGCH"
     gene            24740..25660
                     /gene="fabD"
                     /locus_tag="SF008_000237"
     CDS             24740..25660
                     /gene="fabD"
                     /locus_tag="SF008_000237"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEG8232549.1"
                     /translation="MNAAFIFPGQGSQSLGMGKDFYENSIKAKELLQNASDFCKIDFK
                     HLLFEENEKLNQSEFTQPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSALAVNG
                     AFDFLEALSLVNKRGLFMQEDCAKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAAN
                     YNCDGQIVVAGLKPDLASYESVFKEAGAKRAMLLNMSVASHCPLLENASAKLCVELEK
                     VLKPNFKAVISNANAKIYTRKEEALELLKAQLISPVLYKQSIKACENEVDYFIEFGAS
                     VLKGLNKKITSKETYALTNMNDIDEFLKVI"
     gene            25657..26346
                     /gene="pfs"
                     /locus_tag="SF008_000238"
     CDS             25657..26346
                     /gene="pfs"
                     /locus_tag="SF008_000238"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HEG8232550.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKVEHANNTYYFANYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQVLLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KVREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            26343..27098
                     /locus_tag="SF008_000239"
     CDS             26343..27098
                     /locus_tag="SF008_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine biosynthesis protein TtcA"
                     /protein_id="HEG8232551.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALVHL
                     LNRMQAHAPFKFELEAITLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYKVSGDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIYNGALRTLAPIY
                     QSKRGITVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKEHPKLFTSLKTAFANLHTESFWLQKA"
     gene            27103..27624
                     /locus_tag="SF008_000240"
     CDS             27103..27624
                     /locus_tag="SF008_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HEG8232552.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFNKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDENLEKS
                     AFDILRAYGIEIV"
     gene            27624..28238
                     /gene="recO"
                     /locus_tag="SF008_000241"
     CDS             27624..28238
                     /gene="recO"
                     /locus_tag="SF008_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HEG8232553.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKMLIKAYRFYGLRHSSILSGY
                     KIDFALEENPSFLPRLKDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYF
                     DLLDECVKRFEKQNPKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNSITLLRAFLP
                     SHSQCALGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            28235..28642
                     /gene="ybeY"
                     /locus_tag="SF008_000242"
     CDS             28235..28642
                     /gene="ybeY"
                     /locus_tag="SF008_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEG8232554.1"
                     /translation="MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGF
                     DHENDNGEMREKEKELIEHFNLPKSLIVRTLED"
     gene            28766..29455
                     /locus_tag="SF008_000243"
     CDS             28766..29455
                     /locus_tag="SF008_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232555.1"
                     /translation="MIVFPLSSFNRYFGNNPLQTLTKIRDESIENGNPELTKKQREEL
                     GNDLIDLYKISKKFSDKIELVEGSIEDKLRNNELPESEVKNLFQWMDENAKHPRWMHI
                     DGVSYDEAYVKIFHTSKSIDEFKEKYLELQKKYFVDFNNIDSSQKKLQETSEEDKKAF
                     KPIQVESKSETYKDDNKMNELLRKLLETKFGTSDELEILFGMNFSNDNAGEFNKILSQ
                     NTSAKIIDIKA"
     gene            complement(29480..30406)
                     /locus_tag="SF008_000244"
     CDS             complement(29480..30406)
                     /locus_tag="SF008_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HEG8232556.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFISIHGRTRKQLYSGKADYGSIASAKASVKIPVIANGDINAQNAKEVYKITKCDGLM
                     IGRASVGNPWIFYEIKSGKSVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GHKDASAFRDTVNRIDNVEEMRKKIEEFFSLT"
     gene            complement(30403..31389)
                     /locus_tag="SF008_000245"
     CDS             complement(30403..31389)
                     /locus_tag="SF008_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232557.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFIYMILAVLHIAFYGFLRYLKFKHFFKDAAKFEAYTQDLLLEKDLKTTFQTK
                     EFRSVAQLFKTIKTHEKIPHSNKINEILDLIDGLNKNEFFNLSKFKLENNNVLYLQNE
                     KNHLKNDANYAYNKLKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEVLTLI
                     KRFKEGNLELSVAEYEVLLSHNILSEKDYLNAAKLSTKLLNPDAILGIFNKIKNEKSE
                     ALRAYLYLLAEFGLLDELREQIHNDDKKFNDFKAFLALREKNIKIDLNQLIQ"
     gene            complement(31379..31741)
                     /gene="dksA"
                     /locus_tag="SF008_000246"
     CDS             complement(31379..31741)
                     /gene="dksA"
                     /locus_tag="SF008_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HEG8232558.1"
                     /translation="MKKNEIQNFKNILEERKKAILENLQSNSNEIEALHNSVPSDSVD
                     FSVIETGSQIDFAISTNLKEELIEIEDSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCRQIAEQGKKHEN"
     gene            complement(31753..32202)
                     /locus_tag="SF008_000247"
     CDS             complement(31753..32202)
                     /locus_tag="SF008_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEG8232559.1"
                     /translation="MQVNIFCIQKNDEFKTCSEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKDLTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            complement(32204..33046)
                     /locus_tag="SF008_000248"
     CDS             complement(32204..33046)
                     /locus_tag="SF008_000248"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HEG8232560.1"
                     /translation="MNFADIFSKIRRQQPSIKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEINGLKTQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITSKTPLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            complement(33055..33777)
                     /locus_tag="SF008_000249"
     CDS             complement(33055..33777)
                     /locus_tag="SF008_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HEG8232561.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLCSKLGYDKNQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKASPKQMILDPLDGSSNFVSKIPFYGTSIALM
                     EKDQAKSAFVCNLVSQEIFAFKNNQAFKSNLSDPKYSPLTPNLFPKIGIVEKISFYPE
                     LLDFLTKNQLKFRSLGATALSLAYASYFSFVLILGKTRIFDTAAALAIHQNLYIEKNE
                     NFLLLSQDKKIFDIILEFLKNN"
     gene            complement(33777..35996)
                     /gene="bamA"
                     /locus_tag="SF008_000250"
     CDS             complement(33777..35996)
                     /gene="bamA"
                     /locus_tag="SF008_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HEG8232562.1"
                     /translation="MKKHLISICALVAMANAATIKDIKFIGLNHLSNTSAINITGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNGILEIIVTEKPTIAKVTITGIASNDRK
                     QVESILGIKRGTLLDEGSIKEAIERIKAYYEAKSYFDTIVEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NAQTVKDLRSSAGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDDTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLVNPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITVGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNNTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEIGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDDTNSFEFNLGTRF"
     gene            36073..>36854
                     /locus_tag="SF008_000251"
     CDS             36073..>36854
                     /locus_tag="SF008_000251"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HEG8232563.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALQL
                     GLIHELIEFKDLALCDMIFVATPVDAIIEILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNLLSSIDFFQQELERCKQMIQLDKNDE"
BASE COUNT        13180 a         4911 c         6521 g        12242 t
ORIGIN      
        1 caaaaatttt tgattttaaa ttaaaatact tttatgaaag gttcaaaatg ggaacaagaa
       61 aagaacatga ttttattggg gaattagaaa tctctgatga ggtttattat ggagtgcaaa
      121 cttttagagc tgttgaaaat tttgatattt ctcatgatag attaaaagat tttcctcgct
      181 ttgttagagc tttggctaga gtaaaaaaag ctgcagctat ggcaaatcat gaattaggtc
      241 ttttggataa aaatatccaa gatgcgatta ttaaagcgtg cgataaaatt ttagaaggcg
      301 ggtattatga tcaatttgta gtagatatga tccaaggagg tgctggaaca agtacaaata
      361 tgaatgctaa tgaagttata gcgaacatag gacttgaact tatgggtcat aaaaaaggtg
      421 aataccaata tcttcatcca aatgatcatg ttaatttaag ccaaagtact aatgatgctt
      481 atcctacggc tttacacctt gccttgcatg attatttaag tgatttggca aaagctatgg
      541 aacatctaaa aaaagcttat gagagaaaag ctgaagaatt taaagatgtt cttaaaatgg
      601 gtagaaccca actgcaagat gctgtaccta tgactttagg tcgtgaattt aaaacttttg
      661 ccgtaatgat aggtgaagat atacaaagag tattagaagc tagaaaattg attttagaga
      721 tcaatttggg tggaactgct attggaacgg gaattaattc tcatcctgat tatccgaagg
      781 ttgtagaaag aaaaataaga gaagtgacag gttttgaata tactgtggct gaggatttga
      841 tcgaggcgac tcaagatacg ggagcttatg tacaaatttc aggtgtttta aaacgtgttg
      901 caacaaaact ttctaaagta tgtaatgact taagactttt aagtagtggt ccaaaatgtg
      961 gtcttaatga gattaatctt ccaaaaatgc aaccaggtag ttctatcatg ccaggtaagg
     1021 taaatcctgt tattcctgaa gtagttaatc aagtttgtta ttttgttatt ggagcagacg
     1081 taactgtaac ttttgcttgt gagggtggac aattgcaact taatgttttt gaaccagttg
     1141 tagcatatag cttatttaat tctgttgtaa tgctagaaaa agcaatgtat actttagctg
     1201 ataaatgtat agatggtatt accgcaaatg aaaaaatttg ttcagacttt gtctataatt
     1261 cagtaggtat agtaacagct ttaaatcctt atattggtta tgaaaattca gcttctatag
     1321 ctaaagaggc aatgaacact ggaaaaagag tggctgatat tgcgcttgaa agagggcttt
     1381 taagtaaaga acaaattgat gaaattttaa ctccatcaaa tatgctaaat cctcacatgg
     1441 aagctaaaaa atagcatttt aggatttaat atggatataa tgataatttt gcaagtaatc
     1501 gtccttcttg gggcgatttt tatcggtatt cgcctaggcg gcattgctat aggttatgct
     1561 ggaggattag gtgtagttat actaggactt gttttaggta tgaaacctgg taatattcct
     1621 tgggatgtta ttttaattat tgctgcagct attgcagcaa tttctgctat gcaacaagca
     1681 ggtggacttg attatatggt aagggtgaca gaaaaaattt taagatcaag ccctaaattt
     1741 ataaattatt tagctccagc ttgtggatgg ttgcttacaa tcttagcagg aacaggaaat
     1801 gcagtatttt ctttaatgcc tgttgtagtt gatgttgcaa aatctcaaaa cataaaacct
     1861 agtgttccac tttcattaat ggttgtttct tcgcaaattg gaatcactgc ttctcctgta
     1921 agtgcagctg tggtttatat gagcggagtt ttagagccac ttggatggaa ttatccaact
     1981 ttaattggaa tttggattag cacaactttt gtagcttgta tgcttacagc ttttatagtg
     2041 agtttaatca ctcctatgga tttaagcaaa gatagcgttt atcaagaacg cttaaaagca
     2101 ggacttgtta aagatgcagg agctatttta catggtgaag ataaaccagg tgctaaactt
     2161 tcagtggtaa ttttcttgat cactgttttg gcagttgtac tttatgcaac cgcaatttca
     2221 agcaatatta aatggattga tcctgttgtg gttccaagag atgcagctat tatgagcttt
     2281 ttacttactg cagcaacttt gatcacttgg ctttgtaaag ttgaaccagg taaaattctt
     2341 gataccagtg tatttaaaag tggtatgact gcttgtgttt gcgtttttgg tgtagcatgg
     2401 cttggaaata cttttgttgc aggacacgaa gcttctatta aagaagtagc aggcgactgg
     2461 gttaaacaaa cccctgctat gttagcagtt gcatttttct ttgcaagcat gcttttatat
     2521 tctcaagcag caaccgcaaa ggccattgta cctgtaatta tcaccgcttt aggaatttca
     2581 gcagcaaatc cgcatgattc ttatatgctt gtagcttgtt ttgcagcagt ttcggcactt
     2641 tttgtgcttc caacttatcc aaccttactt ggtgctgtgc aaatggatga tacaggaacg
     2701 actagaattg gtaaatttat atttaatcac tcattcttta taccaggggt tttagctatt
     2761 gcaattgctg tagcattagg ctttgtatta gctcctatgc ttatttaaat caaaccctag
     2821 gtttttctct cctagggtta aaattttttc attagttttt aagtatatac tacgctataa
     2881 tattcatttt taattttctt taagaaagga atttaatgaa gataaaagtt gggttgattt
     2941 tttcaggtat tgcttgcctt tttttaacag cttgtgttaa tcaggttaaa caaaatacaa
     3001 catttgaaaa tactttaaca caaaaatatt gtggtgatga ttttttcaat caaaatttag
     3061 aaaaaattaa aaaaaatgat gatgtcattt atacaggatt aaatgcaggt ttgattgcta
     3121 gaaattgtgg tgattttaat aaaagtaatg tattttttga tgctgtagaa gaatcttata
     3181 aatatgatgt ggatttagaa aatgtaagcc ctaaagcagc taaatttatt ggtacaacct
     3241 tgcttaatga taatatagta gattatgatg gttctttata tgaaagaatt atggttaata
     3301 tatataaagc tctaaactat atggaagaag atgattatga aaatgcaaga gttgagttta
     3361 atcgtgcttt aatgcgtcaa gataaggcaa aagaatattt tgctaaagaa attgaaaaaa
     3421 atcgtgctga tttagataag gcaaaagaag ataaaaatta tgataaaaat atgaatgaaa
     3481 attcaaaagt tatagaagcg caatatgata acttatttaa agaatttgat acaacaaaaa
     3541 atttcataaa tccttatgcg acttatcttg cttcaatatt tttctttatg gataaagatt
     3601 atagaaaagc tgcagattta tttagagaag tatctattat ttatccaaaa aacaaaacta
     3661 tcaaaaaaga ggctaaaatt tttaaagaat atgccacaaa aataaaagtt aaaaaagcta
     3721 aaaaatatgt ttttgtagtt tatgaaaatg gatttggtgt agttaaggat gaatttgctt
     3781 taaccttacc ttttatagtg gataaaaaaa ttattagcac aaatattgct ttacaaacct
     3841 taaaaaaaag ggaagcttct tttgcaaatt taaatataaa tggtcaaaat acaaatgatt
     3901 ttgtagattt agacaatatt gtcgctactg aatttaaaat aaatatgcct gcaatgattg
     3961 ctaaagcctt agctcaaact ataattaaaa ccactttaaa tgtagctgtt gcaaataatg
     4021 actctacagg tggatggcta agtcttgcaa cagcagtagc aactgctgca accaataaag
     4081 ctgatgtgcg ttcttggaga ggtttaccaa aaagtattgc catagcaaca atagaaaacg
     4141 acggaaattt agaaatcaaa gatccacaag gcaatatttt gtttcaaaaa tcattggata
     4201 aaaataaaaa tgctcttgtg atagtgcgtt cttttgctcc gtatttaccc gcaagtgttg
     4261 ctatcatgga aaaataaggc taaaagatga aaaaaaatat tttatttatt ttaatgtttt
     4321 tacttagtgc ttgtgcacca agttatcaaa taaattcaaa tcaaaatact gtaattttag
     4381 gttcaaattt accaaaaagt ttagtaaaac aatttcaaaa gcgtataaat agcaatggtt
     4441 atttagaatt tgaagtgatt ttgcgcagta cttttgctaa agatgtaatt tataaagtag
     4501 attggttaga taaagatggt tttgtgctaa gagatgtttt aaatgaggac tatcaagccc
     4561 ttagaattcc agcaggacaa gaggtaattc ttcgtaaact tgtatctgat acaagagcga
     4621 aggagtttag attagaaatt aaagcaaaaa attaatctca ttttaggaag gataaatcat
     4681 gaaaaaaaca aaaattttag gaacagctct tattggagct ttgcttttta gtggttgtgc
     4741 gcaaacagct tatacagatg gaaaggcaag tcagataaaa aaaggcgatg ctttaacctt
     4801 gggtcttgat agacaagatt ttgaaagtgc agctgaaact atgataaata gtatgttaag
     4861 cgatcctgct tttgcaaata ttaaaccagg tacaagaaag gttattgcta ttggtagggt
     4921 tgtgaatgat accccgcaaa gaatcgatac tgaaaaactc accgcaaaaa tcacttctgc
     4981 attaagaaaa tcaggtaaat ttgttctaac ttcagcagtt gctgcaggcg gagcacttga
     5041 tagcatgagt gaagatgtaa gagaattaag agataatgat gagtttaatc aaaaaaccat
     5101 agcaaaaaaa gggacattgg tatcgcctga tttttctctt gcgggtaaaa ttagacaaga
     5161 taatgtaaaa cttagcaatg gtaaaactca agtagaatac tttttcttgt taagacttac
     5221 tgatttaaca tcaggtttag tttattggga agatgaacaa actattgata aaaccggttc
     5281 tagtaaatca gttacttggt aaaataaaaa ttaatttatg aataaaattt tttagctcaa
     5341 gtgtttagct tgggcttttt ttatgatttt taaaaggata cgaaatgaaa aaaatattat
     5401 ttatcggctc tttagttatg gcaagtttac tttatgcaca aggttcccag cctgtagaaa
     5461 ttacacaaca agatataaat actcaaaatg aaatgtctga cgcaagtact aaggatatta
     5521 ccccaaaatc aattgaagat ttttttgaag aatttgcgga taatttcggt atagaatatg
     5581 gtataaccaa agatggaaaa actttttata caggaaaaag tactgttgct gtaaatgata
     5641 ctgatccaca atttgcacaa gctttacaaa atgcttacca aaaagcaatg ttaaatttgc
     5701 aaagcgaatt tataagagat gcttttggaa gaattgctac aagcaagatt caaaattatg
     5761 aagcagacaa ttctactaat gctaaggaat ttgatgaatt gccaaaaggt gataaggttg
     5821 atcaaatttt aaataaactt acacaattag ctggtgctca gcttgataag gcattaaaag
     5881 atttaggtat agatacaaat tctttaagcg aagacagaaa aaagacttta ttaaagcaag
     5941 aatttcttaa taaaactatg acaaatgcca taggttctat gagtggactt gttcctgtgc
     6001 aaactatagt tacacaaaga agaggtgagt atgatgtagg tgttattgct gttatttcca
     6061 ataaaactcg ccaattagca aaagatatgg cactagcaag acagagtgct attaagggta
     6121 aaggcaaggc aataagtgag tatctgccaa aagatacaaa aggcttttta aatgaatatg
     6181 gaattcgctt agtttatgat gaaaatggtg cacctattat tttaagttat ggaaactggg
     6241 gttatgtagc agatcctagt aatgctaaaa aaacaaatat tttagaagat agagccaaag
     6301 aaacagcact tactatggct gatgctgcta ttatagagtt tattaataca aatttaagtc
     6361 ttaaagatga aagaacaact ggtgatactt acgaggaaat catcaaacaa agtattaatg
     6421 ttaatgatag ttccactcaa gaacaaactc aaaacgtaac aaatattatt gataaagtaa
     6481 atagtaaaat aaaagcaagc gcaagcggta aaattcgtgg tattcgtact cttaaaaaat
     6541 ggagctatac aagtgaaaat ggtattgaac atgtaggagc tgtgagattt tattcttatg
     6601 aaaatttaac taacacaaat gaggctttaa attcaaagtc aaatgcaaca aaaaatgaag
     6661 ctaaaaaatc ttctagcata caaagaagtt ctaatgttgt aaatagcatg gatgattttt
     6721 aaaggtaaaa gatgaaaata attaaaattc tttttttagg cttattttta agcctaagtc
     6781 ttaatgctaa agttataacc acaacttcaa caaaatcaag cacaggtgaa ggcacaggct
     6841 tgaccaggga agatgcgata aacaatgcca ttatagaggc tataggaaaa atgagcggag
     6901 taagcatcaa ttctcttaag aaatctaaca ctagcgtttc aactgataat tcaggttcaa
     6961 acatacaaga taattacagc gagcaaattt caaaagccac caaaggtaga gccgatactt
     7021 atgaaatcaa tagtgttgaa caagatacaa atggtaaata tacagtcaat gtaacgattt
     7081 ttaaaaccac aacaacaaaa aagtatcaag ctccaggttt aagtgcagat aatagaagaa
     7141 gtattactgt ttttgattct actccagatg ctgcaaaaag aggcataggc tcagctttac
     7201 aacaaaaaat catttctgat ttattgcaaa gtcgtaaatt taatgtttta gaccgtgatt
     7261 ttagtggcta ttatgaaatg gaaaaagctt taatcaaaag tggtgacgca gctagtgatg
     7321 aagtttataa acttaaaaat gtgttagcaa ctgattatat tttattgttt tctatttcag
     7381 gacttgaagg taaacaaaaa acaagcaatt taacaggaaa aagcaaaact gaaattgaag
     7441 ttatcgtaga ttatcgtgtg cttttatttg ctacaagaca aattaaattt tctaatactt
     7501 taagtatgaa agtcaatctt aaagacaata gtcttagcgc caatgaagct gcactcaaac
     7561 aaattgcaaa tcgtattgca ggagatattt taaatgcaat ttatcctttg aaagttgcaa
     7621 gcgttgaaaa caatgaagta gtattttctc aaagcttaaa tcaaggtgat gtttatgaat
     7681 gttttgctct tgggaaggtt ataaaagata cttatacaaa agaaaataca ggaagagtag
     7741 aaagcaaaac aggaagtatt gaaatcactc gcacaagccc taaactttct tatgcaaaaa
     7801 tcacagaagg tagtgtaaaa gtaggcgata tttgtagacc tttaatcggt agcaatagtg
     7861 gaaatggcta cactataggt cgtgatgcaa attatcaaac ccaagaaggt ggcggagtaa
     7921 atctaggctt ttaaattttt agagtttgat ttttctcaaa ctctaaatcc tttcttaaat
     7981 tcatcaaaaa ttaaagaaaa attttgtaaa atcgaaattt tattaaacca ctaaagcttt
     8041 taaatccgtt attgcggtgc tttatggtac taccaattta taaggaaaag caatgtatgc
     8101 tattatcaaa cacagcggaa agcaatacaa agtaagtgtt ggcaatgagc taaaactaga
     8161 tcactttgaa gctgaaagca aagcaaatat tgaagtaagc gaagttcttg ctatcaatga
     8221 taaagaatta aaggtaggtg cacctttcgt agcaggtgca aaagttgttt tggaagtgat
     8281 caatcacgga aaagataaaa aagttgtgat ttacaaaaaa agacgcagaa aagattctaa
     8341 actcaaacgc ggttttagaa gacaatttac tcgcgttgta gtaaaagata tcaaagctta
     8401 aggagtaaag aatggcacac aagaaaggtc aaggttcaac tcaaaataac cgcgattcca
     8461 taggtcgtcg tttaggtgtt aaaaaatttg gtggcgagtt tgttagagct ggaaatatca
     8521 tcatccgcca aagaggaact gcaactcatg caggtaacaa tgtaggcatg ggaaaagatc
     8581 atactatctt tgctctaatt gatggttttg taaaattcga aagaaaagac aaagatagaa
     8641 aaaaagtttc tgtatatcct gcataagttt ttaggacgct ttttagcgtc ttgaaaactt
     8701 taaatttata aatttaactt cttttattta ctcaaattta gctttataaa tttaaagtca
     8761 aaggcaattt aaatgtttat tgatagtgtt aaaattactt tagcttcagg cgatggtggc
     8821 aaaggtgctg taagttttcg ccgtgaaaaa catgttccac ttggtggccc tgatggagga
     8881 gatggtggaa atggtggtga tattattttc gtatgtgata ataataccca cactcttgta
     8941 aatttcaaag gcaaaagaga attacgcgcg caaaatggtg ctggtggaat gggacgcaat
     9001 aaaaatggca aaaagggtga aaatttagaa cttatagtgc ccgaaggaac gcaagttatc
     9061 gatgtacaaa ccaatgaaat tttacttgat cttaccaaag aaggacaaag agagcttttt
     9121 ttaaaaggtg gaaaaggtgg acttggcaac acccatttta aacacgccac caatcaacgc
     9181 cccgattacg cacaacctgg tataaaagga gaaagtcgct tggtcagact cgaacttaaa
     9241 cttattgccg atgtagggct tgtgggcttt ccaaatgtgg gaaaatctac tcttataagc
     9301 gttgtttcaa atgcaaaacc tgaaattgca aattatgaat ttaccaccct tactccaaaa
     9361 cttggactcg tagatgtaga tgagtataat tcctttgtta tggctgatat tccagggatt
     9421 atcgaaggag caagtggggg taaaggctta ggacttgcct ttttaaagca catagaaaga
     9481 acgagctttt tacttttcgt gctagatcct atgaggcaaa tgcctttaaa agaacaattt
     9541 atagtactaa gaaaagaact tgaaaaattt tccaatgaac tttttgggcg taaatttggc
     9601 atcatgattt caaaaagtga tagtgtgaat ttaggagaag aatttgccga gcaaattact
     9661 ttaaacatta atgagttaga aaattatctc aaagaaataa ataacccaca aagtttttta
     9721 atcaaagttt caagccttga aaaaacagga cttaaagaac ttaaattcat gcttttagaa
     9781 gaaattaaaa ctttaagaaa taataaataa aaattttaac aatctaggaa gtgttttata
     9841 ttaaaaattt caaacactcc ctattttttc aaaaaataac tagtttatat gaaattttgg
     9901 ctaaaattat aaaaattttt caaggaataa gcatgaaaag aatagttgtt aaagtgggtt
     9961 ctcatgtgat tagcgaagaa aacactttaa gttttgagcg tcttaaaaat ttagtcgcat
    10021 ttttagctaa actcatggaa aaatatgaag tgattttagt aacttcagcg gctatttcag
    10081 caggacacac caaactagat atcgatagaa aaaatctcat caataaacaa gttttagccg
    10141 ctattggaca acctttttta atcagtgttt ataacgagct tttagccaaa tttaataaac
    10201 taggtggaca aattttactt acaggtaagg attttgactc tagaaaagct accaaacacg
    10261 caaaaaatgc tatcgatatg atgataaatt taggaatttt acctattatc aatgaaaatg
    10321 acgctacagc tatagaagaa attgtctttg gtgataatga tagcttaagt gcttatgcta
    10381 cgcatttttt tgatgcggat ttgcttgtga ttttaagcga tattgatgga ttttatgata
    10441 aaaatcctag tgaatttagt gatgcaaagc gtttagaaaa aatcactcat attaaagaag
    10501 aatggctaca agcaaccata aaaacaggta gtgagcacgg aacaggtggc atagtaacca
    10561 aacttaaggc agctaaattt ttacttgaac acaataaaaa aatgttttta gcaagtggct
    10621 ttgatttaag tgtggcaaag acatttttat tagaagataa acaaataggt ggaactttgt
    10681 ttgagtgatt aatttattaa attctctttt aaaatcaaat aagctataat taaaactttt
    10741 aatttcacac aaagcgaaaa aatgaaaaaa attattttta tgggcactcc atcttacgca
    10801 acttgtattt taaaagcact agtagaaaat gaaaatttta aactcgtagc actttttact
    10861 cagcctgata aagccgtagg tagaaagcaa attttaactc caagtgatac taaggctttt
    10921 ttaagtcaaa attatcctag tattcctatt tttactccaa gttctttaaa agataaaaat
    10981 attataagag agattaagga tttaaatcct gattttatcg tggttgctgc ctatggaaaa
    11041 attttaccta aagccatttt ggatttagcg ccttgtgtga atttgcacgc ttctttactt
    11101 ccaaaatacc gtggtgccag tccgatccaa agtgcaattt taaataaaga tgaaaaaagt
    11161 ggagtttgca ccatgctcat ggaagaaggg cttgacacag gtgctatact tgaaagctta
    11221 gaatgtgata taaaagataa aaattcaagt gaagtttttg aacttttagc aaatttggcc
    11281 gctaagctga tcctctctac tcttttaaat tttgataaaa tcacccctaa aaaacaagag
    11341 gaaagtctag caacgctttg tagaaaaatc aaaaaagaag atgggcttat aaatttgcaa
    11401 aatgcaagag aactttatca aaaatatcta gctttcaccc cttggcctgg agttttcttg
    11461 gaaaatggac ttaaattctt agaacttgaa cttgtggatg aattaaaaca aaatgctaag
    11521 atgggtgaaa ttttagaatt agaaaaagaa agttttttgc ttgcttgcaa acaaggagtt
    11581 ttgcgtatta aaaaacttca agaaagtgga aaaaaagctc ttgatggtag gacttattta
    11641 aatggaaaaa ggcttaaaag tgaagatagt ttgtgttgaa agtatagact caactcatct
    11701 ttttttatgc aagcaaatac gcaatggaaa gattgatgaa aattttgcta tttatgcttt
    11761 agaacaaata aatggagttg gaagtaggga aaattcttgg cagagctcta aaggaaattt
    11821 acatctttct ttctgtatta aagaagaaga cttgccaaaa gatttacctt tagcttctgt
    11881 gagtatttat tttgcttatt tacttaaaga agttttacaa gaaaaaggtt ctaaaatttg
    11941 gcttaaatgg cctaacgatt tatatttaga tgataaaaaa gctggagggg ttataagtgc
    12001 taaaatttca aattttatca taggcggtat gggtttaaat ctgaaatttg caccccaaaa
    12061 tacagcttta tgcgatatag aaatttcgct taaagattta gtgagtgagt ttttgcaaaa
    12121 agtagaaaaa aaaattttat ggaagaatat ttttagcaag tatatgttag aattcgaaaa
    12181 atcaagaaaa tttagcgtcc atcatgaagg taaagttttt tcacttgaaa attctttttt
    12241 gtatgaagat ggttcaattt tactaggcga taaaagggtg tatagtttaa gatgagcgaa
    12301 attattacaa tagcaaatca aaaaggtgga gtaggaaaga ctacaacagc agtaaattta
    12361 gccgcttctt tggctgtggc tgaaaaaaaa gtacttttga ttgatgttga tccgcaagct
    12421 aatgcgacta caggacttgg ttttaatcgt aataattatg agtataatat ttaccatgtt
    12481 tttataggaa gaaaaaagct ttcagatatt attttaaaaa cagaattgcc acaacttcat
    12541 ttagctcctt caaatatagg tcttgtaggt atagaacaag agcttgctaa aggtgaaaat
    12601 aatgagaaaa aaatgcttct taaaaatcaa attcaagaag tgattgatga gtatgatttt
    12661 attattattg attctccacc tgctcttgga agtattacta taaatgcttt tgcagcaagc
    12721 gatagtgtaa ttatccctat acagtgtgaa ttttatgcgc ttgagggtgt agctatggtt
    12781 ttaaatacaa ttaaaattat caaaaaaact attaattcta aacttagggt tcgtggattt
    12841 ttaccgacaa tgtatagctc tcaaaataat ctttctaaag atgttgtaga tgatttgaaa
    12901 caaaatttta aaaaacaact ttttactatt aatggaaacg aagatgattt tattgtgatc
    12961 cctcgcaatg taaaacttgc agaaagtcca agttttggaa agcctataat tctttatgat
    13021 attaaatcac caggttctgt tgcttatcaa aatttggcgt attctatatt aggataatta
    13081 taatggggtt aaataaagat aggggtttaa gtagtttaat cagtgatatg gatactgttt
    13141 atagtaaaga attgggtttt gataaaaatc aaagcactat gatagaaatt gatcaaattt
    13201 cacctaatcc atttcagcca agaaagaatt ttgatcaaga agctttagat gagcttgcta
    13261 attctatcaa agaatttgga cttattcagc ctattattgt atttaaaaaa aataataaat
    13321 ttattttaat tgctggagaa cgtcgcttaa gagcagtgaa agcattagga aaaaaagaaa
    13381 ttctagcttt tattgctgat attgatgaga ataagcttag agaattggct cttattgaaa
    13441 atatacaaag agagaattta aaccctattg agcttgctaa ttcttataag gatttaatgc
    13501 aagttcataa aattactcaa gagaatttag cagaacttat tcataagtct cgcactcaaa
    13561 taacaaatac tttaagactt ctgaatttag atattagaac tcaagagttg attgcttctg
    13621 gaaaaatttc tcagggtcat gctaaagttt tggttggttt agatcaaaaa gatgaaaaaa
    13681 tgttagttga tagcataata ggtcaaaaac ttaatgttag agatactgaa aaaatagtta
    13741 aaaaaataaa aaataatgaa agcttaccta atcaagaatt tgaagatgaa ataaaaaaat
    13801 taaaacaaat actaaatcgc tttggatttg actgcaaaaa taaaaataat gattttgtaa
    13861 ttcatttaga aaatattgat aaaattaaaa aattaatcaa aatgcttgaa aagttttaac
    13921 caaaatctta gcttttttat ggtaaaatag tccttcaaaa attctaacca aggagaatta
    13981 tgtttgaaga tatgcatcct tccataatgc ttgctactat agctattttt ttggctatga
    14041 tagttatttt aaatagtatg ctgtataagc cgcttttaaa atttatggat gaaagaaatg
    14101 attctataaa aaatgatgag aataaagtaa aagaaaattc tcaagaagtt ttatgtgtga
    14161 atgatgaatt agaagttatt catattaaca ctagagaaga aattcaaaaa atcaaacaaa
    14221 gtgctatagc tgctgctaaa gaagaggcag agcaaattct tagaagcaag aaagaagaat
    14281 tagaaagaaa aatggccagc ttttatgcag atttagctat tcaaaaaaaa gagttacaag
    14341 aacatttaaa catacattta cctgagctta agcaagcttt gcaaaataac ataaagaaaa
    14401 tttaagagga gagaaatgag taagttatta tttattatat ttttgctacc tttgtatgct
    14461 tttggtgcat caaacggtag tggagaatat gatattattc caaggactat taattttcta
    14521 atttttgtgg gtatattgta ttattttgtt gcaactccat ttaaaaattt ttacaaaaac
    14581 cgtattgtaa aaatttcttc taaacttgat gaaattcaaa aaaaactttt agaaagtaaa
    14641 gctaagaaat tagatacaat gaaaaaactt gaagaagcta aggcaagtgc tgctgccgct
    14701 ttaattacag caaaaaaaga agctgaaatc ttagttgaaa atattaagaa agaaactcaa
    14761 gatgagttag atttacttca aaaacatttt gaggaacaaa aagattatga atttagaaaa
    14821 atggaaaaag aattagtatc aaatacttta aatgaaattt tttctgatcc aaatatgaca
    14881 ttaaaacaga gtgaaataat agaacttatg atgaagaagg tatcttaaat atggaaaata
    14941 taattgcaag aagatatgca aaagcgatag cttcaagagc tgatataaat gatttttatc
    15001 agaatttgtg tattttaaat tctgcttttg ttttgccaaa atttaaaaat attatagaat
    15061 ctaatgagat taaaaaagaa agaaaaatgg aatttcttga ttcttttttt gatattaaaa
    15121 attctagttt tcaaaatttt ttaagacttt tgattgaaaa ttcaagatta gaatgcattc
    15181 ctcaaatagt taaagaactt gaaagacaaa aagcttttaa agaaaatatt tttgttggta
    15241 ttgtatattc taaagaaaaa ttaagtcaag aaaatcttaa agatcttgaa gtcaaactta
    15301 acaaaaaatt tgatgcaaat attaaactaa ataataaaat cagtcaagat gatagtgtta
    15361 aaatagaatt agaagaatta ggttatgaac tttctttttc tatgaaagct cttcaaaata
    15421 agctaaacga atatatattg aaaattatct aaggagaaaa agtaaatgaa atttaaagct
    15481 gatgagatca gttcaataat caaagaaaga attgaaaatt ttgatttaaa tcttgaaatt
    15541 gaagaaacag gaaagattat ttctgtagct gatggtgttg ctaaggtata tggacttaag
    15601 aatattatgg ctggagaaat ggtagaattt gaaaatggtg ataaaggaat ggccttaaac
    15661 cttgaagagt cgagtgtagg tattgttata cttggaaaag gagaaggttt aaaagaaggt
    15721 gcttctgtaa aaagacttaa gaaattactt aaagttccag taggtgaggc tttgattggc
    15781 cgtgttgtaa atgctttagg tgagccaatt gatgctaaag gtgtgatcaa tgctaatgaa
    15841 tatcgttttg ttgaagaaaa agcaaaaggt attatggcga gaaaaagtgt tcatgagcct
    15901 ttacatacag gaattaaagc tattgatgcg cttgtgccaa ttggtcgtgg tcaaagagag
    15961 cttatcatag gtgatagaca aacaggtaaa actactgttg ctgttgatac tattatatct
    16021 caaagaggcc aaggagttat ctgtatatat gttgcaattg gtcaaaagca aagtacagtg
    16081 gcacaagtgg ttaaaagact agaagaacat ggtgctatgg aatatactat tgttgtaaat
    16141 gccggtgctt cagatcctgc ggctttacag tacttagctc catatactgg tgtaaccatg
    16201 ggtgaatttt ttagagacaa cgcaaaacat gctttaattg tttatgatga tttgagcaag
    16261 catgctgtag cttatcgcga aatgtctttg attttacgtc gtcctccagg tcgtgaagct
    16321 tatccaggcg atgtttttta ccttcattca agattgcttg aaagagcaag caagctaaat
    16381 gatgaattag gtgctggttc tttgacggca ttgccgataa ttgaaacaca agcaggagat
    16441 gtttctgctt atattccaac taatgttatt tcaattacag atggacaaat tttcttagaa
    16501 actgatttat ttaactcagg aattcgtcct gcaattaatg ttggtttatc agtatctcgt
    16561 gtaggtgggg ctgctcaaat taaagctaca aaacaagttt caggcacatt aagacttgac
    16621 cttgctcaat atagagagct tcaagctttt gcacaatttg ctagtgattt agatgaggca
    16681 agtagaaaac aacttgaacg tggacaaaga atggttgaac tcttaaaaca accaccttat
    16741 tctccgctta gcgttgaaaa acaagtagtt ttaatttttg caggaaccaa aggtttctta
    16801 gatgatattg ctgtttctag aattaaggaa tttgaagatg gaatttatcc ttttattgag
    16861 gcaaaacatc cagatatttt tgagcaaatt cgctctaaaa aagctttaga ttctgatttg
    16921 gaagaaaaac tagctaaagc cattaatgag tttaaagcaa atcatttata aggtctttta
    16981 tgtctaattt aaaagaaatt aaaagaaaaa ttaaaagtgt tcataacact caaaagacta
    17041 caaatgctat gaagctagtt tctactgcta agttaaaaaa agcagaagaa gcagctaaaa
    17101 gatcaaaaat ttatgcacaa aaaatcgatg aaattttgag tgaaatttca tttcagatca
    17161 ataaaattgt tcacaatgaa gatgatgtgc gtttatcttt gtttcataaa aaagaacaaa
    17221 ttaaaaccgt agatttaata tttatcactg cagataaagg cttatgcggt ggttttaata
    17281 ttaagacttt aaaaacagta agtgaaatgc taaaagaata tgaagcaaaa aatattaata
    17341 ttcgtcttag agctataggt aaaactggga ttgaatattt taattttcaa aaaatagaat
    17401 tgttagagaa atatttccat cttagttcta gtcctgatta tgagaaagca tgtgaagtaa
    17461 ttcatgctgc tgtagatgat tttttaaatg gaaatacaga tgaagtgatt ttagttcata
    17521 atggttataa aaatatgatt acccaagaac ttaaaattaa tcatcttatt ccagttgaac
    17581 caaagagtat tgaacagact cataattctc ttttagagct tgaaccagaa ggaactgagc
    17641 ttttagaaga tttaatgaaa acatattttg agtataatat gtattatgcg ttaatcgatt
    17701 ctttggcggc agagcatagt gcaagaatgc aagctatgga taatgcaact aataacgcaa
    17761 aggcaagagt gaaacagcta aatttagctt ataacaaagc aagacaagaa tctattacca
    17821 ctgagcttat agaaattatc agtggtgttg aatcaatgaa atagtaaatt ttaaggagaa
    17881 gataaataat gcaaggattt atttcacagg tattaggtcc ggttgttgat gtagatttta
    17941 acgactattt acctcaaatt aatgaagcaa ttgttgtaaa ttttgaaagc gaaggaaaaa
    18001 aacataaact tgttttagaa gtagcagctc atttaggaga taatagagtt agaactattg
    18061 ctatggatat gacagatggt ttggtaaggg gcttaaaagc tgaggcttta ggtgctccta
    18121 ttagtgttcc tgttggtgag aaagttttag gaagaatttt caatgttact ggagatttga
    18181 tcgatgaagg tgaagaaatt tcttttgata aaaaatgggc aattcataga gatccaccag
    18241 cttttgaaga tcaaagcaca aaaagtgaga tttttgaaac agggattaaa gttgtagatt
    18301 tacttgctcc ttatgcaaaa ggtggtaaag taggtctttt tggtggtgca ggtgttggta
    18361 aaactgttat tattatggag cttattcaca atgttgcatt taagcatagc ggctattctg
    18421 tatttgcagg tgtgggtgag agaactcgtg aaggaaatga cctttataat gaaatgaaag
    18481 aaagtaatgt tttagacaaa gttgctctat gttatggaca aatgaatgaa ccaccagggg
    18541 caagaaatcg tattgcttta acaggtttaa caatggctga gtattttaga gatgaaatgg
    18601 gtcttgatgt gcttatgttt attgataata tctttagatt ttcacaatca ggttctgaaa
    18661 tgtcagcact tttaggaaga attccatcag ctgtgggtta tcaaccaacc ttagcaagtg
    18721 aaatgggtaa attccaagaa agaattactt caactaaaaa aggctcaatc acttcagttc
    18781 aagctgttta cgttccagct gatgacttaa ccgacccagc tccagcaact gtttttgctc
    18841 acttagatgc tacaacggtt ttaaatagag ctattgctga aaagggtatt tatcctgcag
    18901 ttgacccact tgactcaact tcaagaatgc ttgacccaaa tatcattgga gaagaacatt
    18961 ataaagttgc tcgtggtgtt caatcagtgc ttcaaaaata caaagattta caagatatca
    19021 tcgccatttt aggtatggat gagcttagcg aagaggataa acttgtagtt gaaagagcaa
    19081 gaaagattga aaaattctta tcacaaccat ttttcgttgc agaagttttc acaggtagcc
    19141 caggaaaata tataagcctt gaagatacaa tagcaggatt taagggaatt ttagaaggta
    19201 aatatgatca tttaccagaa aatgctttct atatggttgg aaatatagat gaagctattg
    19261 caaaagcgga taaattaaaa ggttaattta tgaacgattt gattaatttc gagatagtta
    19321 cgcctttggg tgtaatctat caaggagaag taaaatctgt tactttaccg ggtagtgaag
    19381 gagaatttgg cgtgcttaaa ggacatgctg ctttggtttc ttctttaaaa tctggagtaa
    19441 ttgatattga aaaagctgat ttaaaccatg aattaattgc tattgatgct ggacatgcaa
    19501 aggtagatga agataagatt tgcgtgttag caaagggtgc ggtttgggtt tgtggaagtg
    19561 atgaaagtga gattgaaaaa aatcttgctc aagcaaaaga tttgattaaa tctatgagtt
    19621 ctgataatgc agctttagca gcaacttttt caaaacttga taatgtaagg atgcattaat
    19681 gaattttgaa gctatatttt attttttcaa tagttcaagt attattactt atatagtttt
    19741 attatggctt tctttatatt ttattttagc atttagtatt ttgtttgcta gattgactta
    19801 tttggctaca tggagaaata aagaaaaaga aagtttagaa actttgctct tgggtgagaa
    19861 ggatttaagt cgtactgatt cgattttaag aaaatgcaat gatacaactt caaatcattt
    19921 agaaatctat aaaaatttag caagtcgccg cgcttctgct ggacttactt ggcttagtat
    19981 tattgcttca acttcacctt ttataggtct ttttgggaca gttatttcta tacttgaaac
    20041 ttttggtggg cttggaactc aaaattcttt aagtatcata gctcctaaaa tcagcgaggc
    20101 tttagttgct acaggttgtg gtattttagt agcaattcct gcttatacat ttcatctcat
    20161 cattaaaaga aaagctttcg aacttttaag cattattgat agcgagatta aagttataag
    20221 ttcgagtaaa taaggttaaa aatgccattt gatgatgaaa aacctgagct taatatcaca
    20281 cctttagtag atattatgct tgtattgctt gcgattttaa tggtaacagc tccaagcatt
    20341 acttatgaag aaaaaattaa tcttccacaa ggtagtcaaa aaaatactag cgctccaact
    20401 gttaagagtt taattattag tattaatgca aaaaaagaaa tttttttaaa tcaagaaaaa
    20461 tacgatttta taagttttgc tgacaatatt gctcaaagaa aagcacaatt taataccgaa
    20521 gatccggttt ttatacgcgc tgataaaagc ttaaaatatg acgatgttat ttcagtctta
    20581 agaagtgtaa aaaatttagg atttaataaa gttgctttac agactgaata atcatgaaaa
    20641 attatggttt gagtaattta aattcgtttt tacttgcttt agcaatatat attagtatag
    20701 taattcttgt tttttttaga cttgtaagcg aggttgaacc tgctatacaa tataccgata
    20761 taaaagatag ttttgtagat attgaacttg ctgaaccatc aaaacaagtt attactcaaa
    20821 gcaacactcc taaagaaata caaaaaccaa cagagcaagt tgatatagaa aagctttttg
    20881 ctcagactac aaataaaaca gttaaaacag aagatattga ccaaaaggcg agtaatttta
    20941 atgagctttt tggaaatatc aaagaaatac aagaagaaaa gactacaaaa attcaatcaa
    21001 gtgctaaatc aggagcttct agtgccccaa aacctcaagc ttctgaactt gtaaaacaac
    21061 ttaatgatag cttgcttcaa gaagaaagtt caacacaagg tgaaagtaca aaggcacaaa
    21121 aaattggaat ttatgatgaa tttttaggga aagtcgtgcg tattatcact caaagatgga
    21181 ctcagtatta tccaaatagt gaaaaaattt ctgttaaggt aaaaattttt attgatgaaa
    21241 atggaaaatt tggctatact tcagttgaaa aaagtgggaa tcctttatat gatgctaaag
    21301 tggctgaatt tttagaaagt caaaaaggta aatttattac ttatcctccg caaaataaaa
    21361 atataagcat taccatgaat ttaagagatg aagcaaaagt taaaaatgat taggagaaca
    21421 aaatgaaaaa aattgtagca atttttttag tctttttagg aagtctttgg gcagaagatc
    21481 cggttattga tgttgttaat tctggtgtgg ttttaccaaa gattatcgtt aaagataatt
    21541 caaatttaag tgatgagaat ttaaagaaaa gcttttataa tatcattgtg aacgatttga
    21601 aagtaagttc aaactttgaa gttgttgcta atgcaactga gacaagtaat tatacttttg
    21661 aatacacttt aaataaaaat ggtaacactt tgagtttaaa tgtaaaaata aaagctggcg
    21721 gttctgataa gtcagagcaa acttatactt taaatggttt agagcaatat ccatttttgg
    21781 cacataaaag cgtcaaagct tctgtaaatg cgttaggact tgcacctgtt gattggatgg
    21841 atcataaaat tttgatcgcg agaaattcta gctctaaaaa aagtcaaatt attatggctg
    21901 attatacttt aacttatcaa aaagttattg ttgatggtgg gcttaattta tttccaaaat
    21961 ggggaaataa agaacaaact ctattttatt atacagctta tgatcatgat aagccaactt
    22021 tataccgtta tgatttaaat accaataaag ctagtaaaat tttatcaagt ggcggtatgg
    22081 ttgtagcaag tgatgtgagt gtagatggaa gtaaactact tgttaccatg gctccaaaag
    22141 atcagcctga tgtttattta tatgacttaa ataccaaaaa tctaacacaa ttaactaatt
    22201 attctggtat tgatgttaat ggaaatttta ttggctcaga tgatagtaaa gtggtatttg
    22261 taagcgatcg tttaggatat cctaatattt ttatgcaaga tttaaatagc aatagtgctg
    22321 aacaagttgt ttttcatggt agaaacaatt cggctgtttc gacttataaa gattttttgg
    22381 tttattcaag tcgtgaacca aatcaagcag gtgtttttaa tatttatttg atgtcaatta
    22441 atagtgatta tattcgtcaa cttacagcaa atggaaaaaa tttatttcca agattttcta
    22501 gtgatggtgg aagtatagta tttatcaaat atttaggtgc gcaaagtgct ttgggtgtta
    22561 ttcgtgtaaa tgcaaataag actttttatt ttcctcttag ggttggaaaa attcaatcaa
    22621 ttgattggta aaaatttcaa ttttaggtta aaattaatta aaaattagat ataataataa
    22681 gaatttatta actttgaaag gtcataaatg aaaaaaattc tttttacttc aatcgcagct
    22741 cttgcagttg ttattagtgg ttgtagcaca aaaagcacta gcgtaagcgg tgatagtagt
    22801 gttgattcaa atcgtggttc aggtggaagt gatggttggg atattgattc aaaaatttct
    22861 caacttaatg atactttaaa taaagtatat tttgattttg ataaattcaa cattcgtcct
    22921 gatatgcaaa atgttgtaag cacaaatgct aatattttta acactgaagt aagcggtgta
    22981 agtattactg ttgaaggaaa ctgcgatgag tggggaaccg atgaatataa ccaagctcta
    23041 ggtttaaaaa gagcaaaagc tgtaaaagaa gctttaatcg ctaaaggtgt aaatgctgat
    23101 agaattgctg ttaaaagcta tggagaaaca aatcctgtgt gtactgaaaa aactaaagct
    23161 tgcgatgcgc aaaacagacg tgctgaattt aaattatcaa gataattaat gaaaaaaata
    23221 ttcacagtag ctcttcttgg agctacttta ctttatgcag aaagctcagc ttttggtgca
    23281 ggagatataa caagcaattc ttcttatggt ttaacttcaa atgaaaaatt atttaaagaa
    23341 aagttagata atttaaataa tgaaaatata caaacaaatg ctagaattaa tgaaattaac
    23401 gaaagaatcg agggtttaca aagcacttta gaaggtataa attctcaata tgccaaatca
    23461 aattctagat taagtcaagt tgaagagaat aatcaaaata ttgaaaataa ttttactagt
    23521 gaaattcaaa aattaaaggc ttatgttgaa gaaagtagaa aaattcaaga agctaataat
    23581 aagcaagtaa aaaaagtttt agccgaactt agttttttag tagatgctat taatgcaaat
    23641 tatgtttcta aaaacgaatt aaatgatgca aatttaagcg ttaaaactat tacacctagt
    23701 gttgttgttt caactacaga ttcaaatagt accattgaaa acaataatac tcaaaatacc
    23761 caagatgata aagcaaaaca aattgatgaa tcttggaaaa agaaaaaaaa taatgaaatt
    23821 ttagaattag cgataaaaga tgttgataaa aatgcttttg aagattccaa agcaaaatta
    23881 aattttctca taacaaagca gtataaacct gcaagagcaa atttttggtt aggggagatc
    23941 gagtataaac aaaaaaatta taacaatgct attgtttatt ataaaaaaag ttcttctttg
    24001 agtacaaaag gagattattt cccaaaactt ttatatcata ctgccatttc attggataaa
    24061 acaggtgata caaaaacagc aaatggtttt tataaagctt taaaaactaa ttatccaaat
    24121 tcacccgaag caaaagcttc acctaataga aaataaatta aggagataaa atggctatag
    24181 aaaaaaatag tgtagtttca atgttttatg agttaaaaga tgcaaataca aatgaagttt
    24241 tagaatcaaa tttatattct caacctattt cttttatttt aggcaaaggt cagattttag
    24301 aaagcttaga agaagaagtg atgaagcttg attgtcctag caatgctgat gtggtaatta
    24361 aaaaagaaaa aggtttaggc gaatacgatg aaaatgccgt tcaaacttta ccaaaagagc
    24421 aatttgcagg tattgattta aaagtaggta tggagctttt tggcgaaggt gaaaatggcg
    24481 aaaccgttcg tgtaactgta aaagaaattg gtgaaaatga tgtgacaatt gactataatc
    24541 atccttatgc aggtcgtgat ttgctttttt ctttaaatat cgtagatgct agagttgcga
    24601 gtgaagatga aattcttaca ggtattatcg caggaagtca tagttgtggt tgtggaagcg
    24661 gacatggaca cgatcatcat cacggacatg gacatggtgg cggcggttgc tgtggtggca
    24721 gcggttgcgg ttgtcattaa tgaatgctgc gtttatattt ccaggtcaag gctctcaaag
    24781 tcttggcatg ggaaaagatt tttatgaaaa ctctataaaa gccaaagaac tccttcaaaa
    24841 cgcaagtgat ttttgtaaga ttgattttaa acatttgctt tttgaagaaa acgaaaaact
    24901 caatcaaagt gaatttactc aacccgccat cgttttaaat tccttaatgg cttatagtgt
    24961 tttacttgaa aaaaaacctg atttaagttc gaaatttgct ttagggcatt ctttgggaga
    25021 attttcagcc ttagctgtca atggtgcttt tgatttttta gaggctcttt ctttggtcaa
    25081 taaaagaggg cttttcatgc aagaagattg tgcaaaagtt gaagcaggta tgatggtggt
    25141 tttggggctt gacgatgaaa aggttgaaga gctttgtcaa aaagcacaaa aagaaaacaa
    25201 gcaaattttc gctgcaaatt ataactgcga tggacaaatc gttgtagcag gtttaaaacc
    25261 tgatttagca agttatgaaa gtgtatttaa agaagcagga gctaaaagag ctatgctttt
    25321 aaatatgagc gtggcaagtc attgtcctct tttggaaaat gcttcagcta agctttgtgt
    25381 ggagcttgaa aaggtgttaa aaccaaattt taaagccgta atttctaatg caaatgccaa
    25441 aatttataca agaaaagaag aagcccttga gcttttaaaa gcacaactta tctctcctgt
    25501 gctttataaa caaagcatta aggcatgtga aaatgaagta gattatttca tagaatttgg
    25561 tgcaagcgtg cttaaaggtt tgaacaaaaa aatcacttca aaagaaactt atgctttaac
    25621 aaatatgaat gatattgatg aatttttaaa ggttatatga tgaaaatagc aattttagga
    25681 gccatgagtg aagaaatcac tcctttactt gaaacactta aagattatac aaaagtggaa
    25741 cacgctaata atacttatta ttttgcaaat tacaaaaacc atgaacttgt tttagcgtat
    25801 tctaaaattg gcaaagtaaa ttctactctt agtgcaagtg tgatgataga aaaatttggc
    25861 gcacaagtgt tgctttttac gggcgttgca ggtgctttta atcctgaact tgaaatcggc
    25921 gatttgcttt atgcgacaaa attagctcaa tacgatcttg atattaccgc ttttggtcat
    25981 cctttgggtt ttgttccggg taatgaaatt tttatcaaaa ctgatgagaa attaaataat
    26041 cttgctttag aagttgctaa agaattaaat atcaaacttc gtgcaggtat tattgcaaca
    26101 ggcgatgagt ttatttgtga tgaagcaaaa aaagcaaaag ttagagaaat tttcaatgcc
    26161 gatgcttgtg aaatggaagg tgcaagtgtg gctttggttt gtgatgcttt aaaagtacct
    26221 tgctttattt taagagctat gagtgataaa gcaggggaaa aggctgaatt tgattttgat
    26281 gagtttgtga tcaattcggc taaaatttca gctaattttg tgcttaaaat gtgcgagaaa
    26341 ttatgataaa tcttagcaag aaacttatac gtcaagtcgc acaagccaat gctaaatttg
    26401 gacttattaa agatggagat agagttcttt tagggcttag tggtggaaaa gattctttag
    26461 ctttggttca tcttttaaat cgtatgcaag cacatgctcc ttttaaattt gaacttgaag
    26521 caataacttt aagttatggt atgggtgagg attattctca tcttcatgca cattgtgaag
    26581 aacacggtat taaacatagt gtgcttgatt caaatattta taaagtttca ggcgatacta
    26641 taagagaaaa ttcgagtttt tgtagttatt tttcaagaat gcgtcgtgga gctttatata
    26701 cttacgccct tgaaaaaggt tttaacaagc ttgctatagc acatcattta gatgatgcgg
    26761 ctgaaagctt ttttatgaat tttatttata atggagcttt aagaacctta gcgcctattt
    26821 atcaaagtaa acgtggtata actgtgatac gccctttgat ttttgtgcgc gaaagacagc
    26881 ttagggataa tgctacgcaa aatgaactta gtgtgatagg aaatgaattt tgccctggta
    26941 tgaagttgag tgaaaaaaat gtaaaatttc cacacgccag agaagaagcc aagcagcttt
    27001 tagcaaattt agaaaaagaa caccctaagc tttttacaag tttaaaaacc gcttttgcca
    27061 atctacacac agagagtttt tggcttcaaa aggcataaaa ttatgaaaaa agcttttgtt
    27121 ttagtagatt atcaaaatga ttttattgat ggaagcttag gttttaataa agctttaaag
    27181 attaaagaaa atattcttaa agccttaaat caaatcgatt ttaataacac gcatttgctt
    27241 ttaacctatg atacgcatga tgagcattat ctacaaagta aagaaggttt aaatttacct
    27301 gtaaaacatt gcattaaaga gagtttgggt tggcaaatgc caaaggaatt tgaacctttt
    27361 ttacaaaaag ctcataaaat tttttataaa aatacttttg gtagcttaga attagctaat
    27421 ttcatacaaa aaagtgatta tgaagaactt cattttgcag ggcttgtttc tcatatttgt
    27481 gtgttttgta atattatttt agcttttggt gctaagccta atgcaaggat aattttacac
    27541 caaaatttaa gtgcaagttt tgatgaaaat ttagaaaaat ccgcttttga tatacttagg
    27601 gcttatggta ttgaaattgt ttaatgcaag gctttatact tcatactcaa aaagttaaag
    27661 atgaggattt gattgtttat attttaagtc ctaaaatgct tattaaggct tatcgttttt
    27721 atggacttag acattctagt attttaagcg gctataaaat cgactttgct ttagaagaaa
    27781 atcctagttt tttaccaaga cttaaagatg tattgcattt gggattttta tggattatgc
    27841 aaagggataa aatgcttatt tggcaagaat ttatccgtct tttatatagg cacttaaaag
    27901 atgtagaaga gcttgatagt ttttattttg atttacttga tgagtgtgtg aaaaggtttg
    27961 aaaaacaaaa tccaaagcgt gttattgttg atgcttattt aaaaattttg gaatttgaag
    28021 gaagattgca taaagatttt ttttgttttg cctgtgatga gaaaattcaa aattccatta
    28081 cattgctaag ggctttttta ccttcgcatt ctcaatgtgc tttaggattt gagtttgaag
    28141 agaaaaaact aaaacaattt tatagtagta aaaattgtgc gatttttgat gatgaagaaa
    28201 tagaaaattt atatcatttg attaaggaag gtttatgata ttaagtgatg aaaaatgtga
    28261 ttttttagaa tctatagcaa gttttttaag tcctaaagat gtggagcttg tctttgtgga
    28321 tagtaaagaa atgcaagaaa ttaacttaga gcaaagaaaa caagataaaa ccactgatgt
    28381 actttctttt ccacttgaaa atatcgatga gagtttgcct ttgggttctg ttgtgatcaa
    28441 tgtggatttg gcaaaagaaa aggctaaaga gttagggcat agctatgaag aagaaataag
    28501 cttgcttttt atccacgcta tgcttcattt gttaggtttt gatcatgaaa atgataatgg
    28561 agaaatgaga gaaaaagaga aagaacttat agagcatttt aatttaccta aaagtttgat
    28621 tgtaaggact ttggaagatt aagtaagatt tttttcaagg gctagaagac ttgcgcttta
    28681 tattttaaat atatgagtaa aaatattaaa aaaaatcatt tttgccgatt tactttagaa
    28741 taaaatttat tccaaggtga taaagatgat agtatttcct ctaagctctt ttaatagata
    28801 ttttggaaac aatcctttgc aaacacttac caaaataaga gatgaaagta ttgaaaatgg
    28861 aaatcccgag cttacaaaaa aacaaagaga agaattaggt aatgatttga tagatttgta
    28921 taagatttct aaaaaattca gcgataaaat agaattagtc gagggttcaa tagaagataa
    28981 gcttagaaac aatgaattac cagaatcaga agttaaaaat ttatttcaat ggatggatga
    29041 aaatgctaaa caccctcgtt ggatgcatat tgatggcgtg agttatgatg aagcttatgt
    29101 taaaattttt cacacaagca aaagtataga tgaatttaaa gaaaaatatc ttgagcttca
    29161 aaaaaaatat tttgttgatt ttaacaatat tgattcatcg cagaaaaaac tgcaagaaac
    29221 ttcagaagaa gacaaaaaag ctttcaaacc tatacaagta gaaagtaaaa gcgaaaccta
    29281 caaagatgat aataaaatga atgagctttt aagaaaacta ctagaaacta aatttggcac
    29341 aagcgatgag ctagaaattc tttttggtat gaattttagc aatgataatg caggggaatt
    29401 taataaaatt ctttctcaaa acacttcagc aaaaattata gatattaagg cttaagattt
    29461 tttaaattat aaaaatcaat caagttaaac taaaaaattc ttctattttt tttcgcattt
    29521 cttcgacatt gtcgatacga ttaacggtat ctctaaaggc tgaagcgtct ttatgccctt
    29581 tagaatactc gtgtaaatgc ttgcgaaata tacttacgcc ttgatctttg tagtgtttta
    29641 tcatttcatc aaaatgagtg agtatgattt cttttttgag tttttcatct acacttttac
    29701 cgcttttgat ttcataaaat atccaaggat ttcctacgct tgcacgccct atcatgagtc
    29761 catcacattt tgtgatttta taaacttctt tagcgttttg tgcgttaata tcgccatttg
    29821 caatcacagg aattttcaca ctcgctttag cactagcaat ggatccataa tcggcttttc
    29881 cgctataaag ctgttttctt gtgcgtccgt ggatacttat aaaatccacc cccaagcttt
    29941 cacaaatttt agccattttt tcaggatatt tttcattaaa tcctagtcga aatttcacac
    30001 ttgtaaggct ttttttattg ttttctttaa tcactcctac aagattttta aaaagctcta
    30061 aattttctag caaagcactg ccagcacatt gtttaacaac tttatttaca gggcaaccgc
    30121 aattaaaatc gatcccatct acaaaatcca tttcatttag catttgcact gcttttttta
    30181 gcacttcttt atctccacct gcaatttgga ctatataggg attttctaat tcagctcttt
    30241 ctagcatatg taaagtttta gaactttcat aaactaaggc attagaactt atcatttcac
    30301 ttatggtaat atcagcacca aattttttta ctacattacg aaaaggcaga tctgaaaaac
    30361 ctgccatagg ggctaaaaac aggggttttt tgctaaaatc tatcattgta tgagttgatt
    30421 tagatcgatt ttgatatttt tttcacgcaa ggctaaaaag gctttaaaat cattaaattt
    30481 tttatcatca ttgtgaattt gttctcttaa ctcatctaaa agtccaaatt cagccaaaag
    30541 atataaatat gctcttaaag cttcgctttt ttcattttta attttgttaa aaattcctaa
    30601 aatagcatca ggatttaaaa gtttagtact tagttttgct gcattaagat agtctttttc
    30661 gcttaatatg ttgtgtgaaa gtaaaacttc atattctgct acactaagtt ctaaatttcc
    30721 ttctttaaaa cgcttgataa gtgtgagaac ttcagaaggc tttttaggga tttttacatt
    30781 tttaatttgc tcataactag ctttttctat aagagtgtta aaagcaattt cttcaaattc
    30841 atctttgatt tcattaaggt ttttaagttt gttataggca taatttgcat catttttgag
    30901 atgatttttt tcattttgca aatataaaac attgttattt tcgagtttaa atttgctaag
    30961 gttaaaaaat tcgtttttat ttaaaccatc aataagatct aaaatttcat tgattttatt
    31021 tgagtgtgga attttttcat gtgtttttat ggttttaaaa agttgtgcta cagatctaaa
    31081 ttcttttgtt tgaaaagtgg ttttaagatc tttttcaagg agtaaatctt gagtataagc
    31141 ttcaaattta gctgcatctt taaaaaaatg cttaaatttt aaataacgca aaaatccata
    31201 aaatgctatg tgtaaaacgg ctaaaatcat ataaataaat aaaggaataa caagccatat
    31261 cataataggt agttcaaagg tataagtgct gatatttaga gtatagcttc ctagttctag
    31321 atgccaagca aaggcaaaaa taagtgctat ataaataaaa cttgcaagta agaagagttt
    31381 aattttcatg tttttttcct tgttctgcaa tttgacggca agtgatacaa tatcttgcgt
    31441 gaggtttgac ttttagtctt tgagagtcga tttcatcatc gcaagattcg caaattccat
    31501 aagtgccgtt tttgatttta tctaaagaat cttcgatttc tataagttct tctttgagat
    31561 tggtgctgat agcaaagtca atttgagagc ctgtttctat gacagaaaaa tctacactat
    31621 cgcttgggac gctattgtga agagcttcga tttcatttga attgctttgc aaattttcta
    31681 agatagcttt ttttctttct tctaaaatat ttttgaaatt ttgtatttca ttttttttca
    31741 ttttaaaact ttctatttgt gataagggtg attgttgttg atgcaaaatg cacgataaat
    31801 ttgttctaaa agtaaggttt taacaaattg atgtgctaaa gtaagtttgc ttaatgatag
    31861 tctaaaatcc aaactttgat taaattcttc tcttaaacca taagcacctc ctataaaaaa
    31921 acttaattca tttttatctt ggatgagttt tgcaaattct atacttgtaa gatctttccc
    31981 tttttcatca agagcgatac aatagccttt tttataaggc ataaaagctt cttcatagct
    32041 tttttttgct tctatggcat ttaaattttg agctaaggct atttttttat taaaaacatt
    32101 tatttctttt aaagtggcgt atttggagat gagtttagag tatttctcac tacaagtttt
    32161 aaattcatca tttttttgaa tacaaaagat attaacttgc aaattatttt ccactaaaaa
    32221 attttagtac atcgctaaga tattgttttt gctctcctct ttcaactatg gcatctataa
    32281 gtccatgttc taacaagaac tctgcttttt gaaaaccttc aggcaaatct gctcctatag
    32341 tttgtttgat aactcttgca ccagcaaaac ctaccaaagc ttcaggttca gcgatgatta
    32401 aatctccaag ccaagcaaaa gaagcactta ccccacccat agtaggatca gttaaaatgc
    32461 taatataagg aagtttttct ttgctaagaa gtttaagtgc ggcactagtt ttgctcattt
    32521 gcatcaaaga ataagtgctt tcttgcattc tagctccacc acttgcactt acgatgacaa
    32581 gaggggtttt acttgtgatg gctctttgta tagctctaac gattttttct ccttcaacag
    32641 aacctaaaga tccgcccata aaagaaaaat caaatacaac aagttgggtt tttaaaccat
    32701 tgatttcaca ttctccactg atgacagaac tttttctacc tgttttactt tcaccttcgc
    32761 taaggcgttt tttataggat ttgctatcaa caaattttaa aggatctata gcttctaaat
    32821 ttgcatcata ctcaataaaa ctgccttcat cgcttaaaag tttaatacgt tcatcagctg
    32881 aaattctcat gtgataattg catttaggac aaacattaaa acaagattct atttctttat
    32941 aatacatcaa agcatgacaa ctttggcatt ttacccagtg atttggagct tctttaatac
    33001 taggttgttg tcttcttatt tttgaaaaaa tatctgcaaa attcatatat tcacctaatt
    33061 attttttaaa aattctaaga ttatatcaaa aatttttttg tcttggctta ggagaaggaa
    33121 attttcattt ttttctatat ataaattttg atgaattgct aaagcagctg ctgtatcaaa
    33181 aattcgtgtt tttccaagaa ttaatacaaa actaaaatac gaagcataag caagacttaa
    33241 ggctgttgca cccaaagagc gaaattttaa ttgatttttt gttaaaaaat cgagaagttc
    33301 tggataaaat gaaatttttt caactatacc tattttagga aatagattag gtgttaaggg
    33361 tgagtatttt ggatcggaaa gattagattt aaaagcttga ttgttcttaa aagcaaaaat
    33421 ttcttgactg acaagattgc aaacaaaagc actttttgcc tgatcttttt ccataagagc
    33481 tatagaagtc ccataaaatg gtattttaga aacaaaattt gaacttccat ccaaaggatc
    33541 aagaatcatt tgttttgggc tagcttttcc gatcaatccg ctttcttcag aaaaaatttg
    33601 tccaaaacaa ctaagatatt ttatgaaaat ttgttcacat tttaagtcaa gctcatagcc
    33661 ttgattttta tcatagccta atttagagca aagtttaaga tcattttgtg ggatattgtt
    33721 tagatacttg cgtatttgca aatttgcatt caagcaagca tctaaaaatt ctttcattaa
    33781 aagcgtgttc caagattaaa ttcaaaacta ttagtatcat cacctttttt atcattaaga
    33841 ggtttggcaa atacaagttg taaaggtcca ataggtgtaa tccattcaat gcctatacct
    33901 gtactcattc tttttatttc atctaaattt ttacgcccta tcataccata atcaaaaaac
    33961 acgctaccac gaagtttgat tctatcaatc aaaggaaaac taagttctac ggaattggca
    34021 aaagctatgg ttccgcctat ttcatctccc cattgatttt taggacttac tgttctgctt
    34081 tcaaaaccgc gtatcgatct aataccacct aaataaattc tttggttaat tggtaaataa
    34141 ccttcatccc atactttata aaaactcgct ttatagcgat aaataagatc atatcctata
    34201 tagtcttgca aaccttgata aaagttaaat ttagagcttg atgaaataaa ttcttgatct
    34261 ccgccaagtc cagcgtattc taaactagtt gaagcaataa tacctgatcg tggcagataa
    34321 taatcatctg tattgttaaa ggtgattgct ggagttatag agcttttaat acttttgcca
    34381 agttcatatc ctgttcttaa aagagttgga cttaagtgat atatatcgct ttgttcaaga
    34441 ttataagtta agcttacatt atagtatctt gcaaattggc gtccaactgt tatatcaaag
    34501 ccgtaatttt tttctgaata attatcccat tcatagtcat ttgaataaag tgttccaccc
    34561 agactatatt gactatcaag aacgcgtgga tttacgagac taatccttcc cgataaagta
    34621 tcatcgcttt tatctacgct tacagagctt tttattcctg aaccaaagat atttgtatcc
    34681 gataaagaag cgttaagcaa aataccatcg cttgatccat agccaatgcc tccagaaata
    34741 gctcctgtag aagcttcttt aacatcaaca atcaaatcaa tatgtgtatc atcaactttt
    34801 tcttctttga tatttacatc gtcaaaataa gaagttcttt ttaaagcatt ttttgactcg
    34861 cttaagtctg ttctattgta taaattacct tctgttatat ataattctcg gcgtatgacg
    34921 cgatctacgg tgcgtgaatt tcctgaaata ataacatttc ttatataaac tttatcgtga
    34981 gggattactt taaatacaac ggtggcttct tgagtttgat catttttttg aatatcagga
    35041 tagacttcta caaacgcata acccaaatca gcactttgtg tttctatggt tttaacatct
    35101 tttctaatgt cttcgatatt gatagttttg ccagcgcttg atcttaaatc ttttacggtt
    35161 tgtgcatttt gcttatcatc aaataaagga ttttctatgc ttatactttt aattttataa
    35221 ggctttcctt ctttgataaa ataagtcaaa tttgcttgat aagtatctgt gtaggtttta
    35281 agataagggg aggatacttg aacatctaaa tatccttttt tcatatattc atcagcaatt
    35341 cttgaactat cgttactaag ttcaaaaact tttaattttc catcattgcg tccccacatc
    35401 catcccataa attctttttc tttgttaaca acagcaggtt ctatatcaga atatgaaaat
    35461 ttctttgctc cacttaaatg aacattatca ataatgatat tttcaccacg atttactata
    35521 aattcaagct ctagtccatc agtattttct aaagtctttt ttttgtattc tacaatagta
    35581 tcaaaataac tttttgcttc ataataagct ttaatgcgtt caatagcttc ttttatactt
    35641 ccttcatcaa gtagtgtacc tcttttaatc cctaaaatac tttcaacttg ttttctatca
    35701 tttgaagcta tacctgtgat agtaaccttt gctatagttg gtttttcagt aactataatt
    35761 tccaaaattc cattgttgtt ttctactgca atattttcga aataattttg tttataaaga
    35821 ttaagaatag cagtgttgat ttttgcagga tttatttcct cgcctatttt aagccccgtg
    35881 atatttatag cgcttgtgtt cgataaatga tttaatccga taaatttaat atctttaatg
    35941 gttgctgcat tggccatagc aactaaagca caaatactaa taagatgttt tttcattgat
    36001 tttttaccta aagctttatt aaaagctgta taatagcaaa aaaaatttaa caaaaaaact
    36061 aaggtagaaa gtatgaaaat agcaattata gggcttgggc ttatgggtgg atctttaggg
    36121 ctttgtttga aagaaaataa gcttatttct tgtgtttatg gtatggattt aagcaaagaa
    36181 aatgaaaaag atgccctgca attaggtctt attcatgagc ttatagaatt taaagattta
    36241 gctttatgtg atatgatttt tgtcgcaact cctgttgatg ctattataga aattttgcaa
    36301 aagttagttg atttgccttc taatgtaaca attatagagc ttggaagtac aaaaagaaaa
    36361 attatagaaa gtttgcctaa gaatttaatc aaacaaactc tttttgctca tcctatgaca
    36421 ggaactgaaa attcaggtcc aaaagcagct tttaaagagc tttataaaga tgcagtttgt
    36481 gttctttgtg atagtgaaat agctgatgat ttacatcaaa aaagagcggt agaaattttt
    36541 tctcatttag ggatgaaaat tgtttttatg gatagtaaag cccatgatca tcatgctgct
    36601 attatttctc atttgcctca tgttataagt ttttctttgg caaattttgt aatgaaggaa
    36661 gaagataaaa gaaatattgt tcatttagcc ggaggatctt ttaaaggtat gagcagaatt
    36721 gccaaatcat cgccacaaat gtgggaaagt atttttttac aaaataaaga taacttatta
    36781 agttctattg atttttttca acaagaatta gagagatgta aacaaatgat acaattagac
    36841 aaaaacgatg aatt
//
LOCUS       DARGEY010000005        34551 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.005, whole genome shotgun sequence.
ACCESSION   DARGEY010000005 DARGEY010000000
VERSION     DARGEY010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 34551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34551
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.005"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..215)
                     /locus_tag="SF008_000252"
     CDS             complement(<1..215)
                     /locus_tag="SF008_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232564.1"
                     /translation="MKKKILYIVVFFVVLILALFIVLKNGIVISSIQFDFLKLEQLYI
                     KLDKKLIVRAKNITINETQNSEISSQT"
     gene            130..1131
                     /gene="mltG"
                     /locus_tag="SF008_000253"
     CDS             130..1131
                     /gene="mltG"
                     /locus_tag="SF008_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEG8232565.1"
                     /translation="MTIPFLSTINKANISTTKNTTIYKIFFFIRNFFLIFILGIFYYL
                     TQPLKSNSVVFIPQGSISQIITYLKQNKYQMSNIDKYILFFLGHPQSGWINIGTKDLN
                     RAEFLHKLTIAKAALQTITLIPGETSVIFLEQAAKQLGLDKDILLKEFQAQAPYDEGV
                     FLPETYKIPKGITENLLIQMLLNHAEISNKKTSEKIFGDYNPKKWHQYIIIASVIQKE
                     AANDNEMPIVASVIYNRLKKGMKLQMDGTLNYGIYSHVKVTPQRIRQDNSSYNTYKFT
                     GLPKEAVCNVSLAAIRAAIFPLKTDYLYFVRDKNTGVHIFSTNIDDHNKAINLQKGK"
     gene            1212..1643
                     /gene="flgB"
                     /locus_tag="SF008_000254"
     CDS             1212..1643
                     /gene="flgB"
                     /locus_tag="SF008_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HEG8232566.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDKKELELAVTEEGHQKPWKFPDPGKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            1653..2147
                     /gene="flgC"
                     /locus_tag="SF008_000255"
     CDS             1653..2147
                     /gene="flgC"
                     /locus_tag="SF008_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HEG8232567.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID
                     LLRG"
     gene            2154..2450
                     /gene="fliE"
                     /locus_tag="SF008_000256"
     CDS             2154..2450
                     /gene="fliE"
                     /locus_tag="SF008_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HEG8232568.1"
                     /translation="MNNINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEIDDLNKAQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            2457..4247
                     /locus_tag="SF008_000257"
     CDS             2457..4247
                     /locus_tag="SF008_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEG8232569.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDACLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNN"
     gene            complement(4262..5893)
                     /locus_tag="SF008_000258"
     CDS             complement(4262..5893)
                     /locus_tag="SF008_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi symporter"
                     /protein_id="HEG8232570.1"
                     /translation="MTNLGIGFKVFSGDLLEKILAKSTDTKIKSILFGTLSTLIMQSS
                     TLVSIITISFLSAGLISLGTGIGIIFGANLGNTASSWLIVGLTNIKISMLAIPLLIIG
                     VLFFFQKDSVLKGLGNIFIGIGFFFLGVDYIKSGFENFKHIIDLSRFDFAGFKGVFVF
                     LGLGALLTGVIQSSTVIMAIIVAALLAGQISLENSLAATLGTSVGGVVTAVLASLSTN
                     IEGKKLAFASCIFNFGIAFLIVLIFPYFIHFLNFLSIVLNIEDIALKVALFHTLFNLI
                     GVVLFSFFTPQIVLFLNKIVKAPKDKNKDKPLYLDSSLVKFSDTAIEALRKESEHLYN
                     NTYAIVAHAIGFSRKDIQSDKSFKEILENKKWFSKNVDLDYLYQTRIKVLFEAIIDFS
                     TKAQVYINDETKNHKIFTFKMAAKNLAETTKNLKIIQANIKKYSSSSNEFLALEYNKI
                     RSNLGELLRSIEELRVVEDREKLYLIIKNLQKGKEILKEIDTLTLSNVEHLISVRKIT
                     TAEGISILNDTTFAAKIAEELIGAVEVIFSKDISN"
     gene            complement(6036..6470)
                     /locus_tag="SF008_000259"
     CDS             complement(6036..6470)
                     /locus_tag="SF008_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232571.1"
                     /translation="MLGIYLLIAALSFLALYFAVKKLTLNIDERTLLEPIKMDIYPKF
                     CDLIDEKIREFKENIQNANLTLKNSNQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSFLKELENLLLEYLEKGEEEAENLREFLMDEFEKLKG"
     gene            complement(6470..6787)
                     /locus_tag="SF008_000260"
     CDS             complement(6470..6787)
                     /locus_tag="SF008_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEG8232572.1"
                     /translation="MIENIPASLWTKQDLNAYQIFDVRTPLEWEEGILSNAQCVALYD
                     NQGLLNAKFLDEFQSKRDESKKLAFICRSGHRSMVAAEFIAEKLGLESINLDGGMLAL
                     KGY"
     gene            complement(6784..8610)
                     /gene="htpG"
                     /locus_tag="SF008_000261"
     CDS             complement(6784..8610)
                     /gene="htpG"
                     /locus_tag="SF008_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HEG8232573.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLS
                     VSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANGYEINDANK
                     EEQGTSITLYLKDDEFANTYKIESIIEKYSNHIQFPIFMEKEEFTPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKAEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLFRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGVKEASVKKILGELEKLKNNDKEKYLSFFKTFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLEFEGLKFVAINQVEDKNELSDEEKNTFAPLVAKFKELLKDQVE
                     DVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKNN
                     ESFSADIATLVLNMAKLSEGMGVDNPAEFNASLTKIINKAFS"
     gene            complement(8683..9051)
                     /gene="crcB"
                     /locus_tag="SF008_000262"
     CDS             complement(8683..9051)
                     /gene="crcB"
                     /locus_tag="SF008_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEG8232574.1"
                     /translation="MLNTLLVVGFGGFIGAILRMLSINLVNKFFPYSISFGTLFVNVL
                     GSFIIGLLFSYAQNKGLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYFNFALN
                     IILNVFLCLFAAWLGFLIFK"
     gene            complement(9045..9737)
                     /locus_tag="SF008_000263"
     CDS             complement(9045..9737)
                     /locus_tag="SF008_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEG8232575.1"
                     /translation="MIYKKIKALYFWIFFVLSVALVIFCFCFTKSQNTLWKIRKIWAK
                     FQRYTISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIF
                     KVAMKKPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGA
                     KILSEKLNLKVQPILIVDSAKILDTKSFSASSGVLKIICMDLVDTNDEKWLENTRKKM
                     QELLDQERVKLC"
     gene            complement(9718..10914)
                     /locus_tag="SF008_000264"
     CDS             complement(9718..10914)
                     /locus_tag="SF008_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEG8232576.1"
                     /translation="MKILLTLIFSIVVLFARGEISVFSGQDENMQKELQKLPQEEQKI
                     YQNIPPSDENNDFESNVDDPFVAKGSLVLTNDEYPSRVYVGEVFPITIYARTTENTKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     ADINLNPIKFENTLSNKDFSHLVASSLEIKKVKASYFDDANIIMMVELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKNSKKLENINLKLKISD
                     DEISTQSDLNPVNKDLNIYKQYALWFLAVLFGVLFVWRKNYIILALAVVCFALSFLVD
                     TNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKVLFSDGKIGWVNK
                     DDLQKN"
     gene            complement(10911..11558)
                     /gene="purQ"
                     /locus_tag="SF008_000265"
     CDS             complement(10911..11558)
                     /gene="purQ"
                     /locus_tag="SF008_000265"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HEG8232577.1"
                     /translation="MKVAIIRFPGTNCEIDTAYAFEKLGVKTQIVWHEEKEFDADLVV
                     LPGGFSYGDYLRCAAIAKLAPAMQGVFNHAKKGGYILGICNGFQILLESGLLKGAMKH
                     NNNLSFISKNQSLRVVSNDNAFLKNFKKDEIISLPIAHGEGNYYADETTLKELQDKDL
                     IILKYEPNPNGSVFDIAGICDENKKIFGLMPHPERACEKVLGNDVGLKMLKGFLS"
     gene            complement(11560..11805)
                     /gene="purS"
                     /locus_tag="SF008_000266"
     CDS             complement(11560..11805)
                     /gene="purS"
                     /locus_tag="SF008_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEG8232578.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSVIEDYELVIEKE"
     gene            complement(11814..12524)
                     /locus_tag="SF008_000267"
     CDS             complement(11814..12524)
                     /locus_tag="SF008_000267"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEG8232579.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCKISTEIFHLLEKNGIKTHLVETISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            complement(12526..13860)
                     /locus_tag="SF008_000268"
     CDS             complement(12526..13860)
                     /locus_tag="SF008_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEG8232580.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIVEQYYVDDQNISDLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDEATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGATKPFDVTLTREIIKIESVYAKMIENENILYLRVTNFD
                     KNVVDVASKELKKYPNVKGVILDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRIASE
                     NQEYKADPKNKISNASLVVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            13987..14277
                     /locus_tag="SF008_000269"
     CDS             13987..14277
                     /locus_tag="SF008_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HEG8232581.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKIVLKEHLAHCMVHAIEENDIQSIEELNKAIDMFMK"
     gene            14389..16962
                     /locus_tag="SF008_000270"
     CDS             14389..16962
                     /locus_tag="SF008_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8232582.1"
                     /translation="MANIQDFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDN
                     ASILNQILNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLENAKGLMS
                     ANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKIDSKTSDETLD
                     SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAELEYGKIPS
                     LEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASSAIMNLSGKEQEDAV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKK
                     A"
     gene            complement(16990..18921)
                     /locus_tag="SF008_000271"
     CDS             complement(16990..18921)
                     /locus_tag="SF008_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HEG8232583.1"
                     /translation="MKILKYIFSFFTLLFIAGFIYVAYLFTSADTEGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPERTITRKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTAALGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDIAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNSNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKVNMKFNESEIIF"
     gene            complement(18918..19469)
                     /gene="maf"
                     /locus_tag="SF008_000272"
     CDS             complement(18918..19469)
                     /gene="maf"
                     /locus_tag="SF008_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HEG8232584.1"
                     /translation="MLILASSSISRANLLKTAKIDFRQVSFDYDENLNKNISPFLYVQ
                     KIVLEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKAKDKKEAYEMLALQNGKYA
                     SILSAFLLVKPEKRVFSLSKTTLYFKNFDENALRDYVENDLYKGKAGCIMCEGFHQNF
                     ITQQVGNLSTALGLDIQTLKAYL"
     gene            complement(19469..21997)
                     /gene="alaS"
                     /locus_tag="SF008_000273"
     CDS             complement(19469..21997)
                     /gene="alaS"
                     /locus_tag="SF008_000273"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEG8232585.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEVLKLPKDRLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGQEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTY
                     LNEKKDFIKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELFMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDVGWVMLENTPFYATSGGQSADSGFIAKREVL
                     DTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILSGIKKLKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDVPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKINEALKQSLETIEKAL"
     gene            22112..23185
                     /locus_tag="SF008_000274"
     CDS             22112..23185
                     /locus_tag="SF008_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HEG8232586.1"
                     /translation="MNFINLQAQYLAYKDEINAEIESVLSSSSFIGGTKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRTLDIGKDDEVIVPSFTFIATAEVVALVGAKPVFVD
                     INLSNYNLDFEAVQKAITPKTKAVIVVSMFGQMSDLRALEEILKDKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEIAKKIRILLNHGQTQRY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQIYNANLKNCQIPQINPNAFS
                     AYAQYSVLVEDRASVLQKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            23190..24056
                     /locus_tag="SF008_000275"
     CDS             23190..24056
                     /locus_tag="SF008_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEG8232587.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDDLDKFLNQNNDIIIIATPTNSHLTIAKKVFKQCKCVLIEKPLALNLKEIDEISN
                     LAKEYSIKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLA
                     VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCIASIHQSWNSTQKLR
                     KIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQPNHLASTSD
                     AYKVQEILERFA"
     gene            24053..24964
                     /locus_tag="SF008_000276"
     CDS             24053..24964
                     /locus_tag="SF008_000276"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEG8232588.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCDKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNASDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILAKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDVLANLNDKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLITCPNDSDEFIHFILKYLPDFN"
     gene            complement(25024..26259)
                     /locus_tag="SF008_000277"
     CDS             complement(25024..26259)
                     /locus_tag="SF008_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEG8232589.1"
                     /translation="MNAINSSFIVLCTLLVLLMTPALAMFYSGMVRSKNTLNTIMNCF
                     IVFGVITLQWVVLGFSLSFGKDEGLGLVGNFENFLLEGISGYNASGVPNILFVIFQMM
                     FALIASAIITGSLVGRIKLGVLVIFLLFWSTLVYDVLAHMIWSSEGFLLKRGSLDFAG
                     GGVVHISSGVAGLVGALMVGARKSDDEDKNAHSIPYAFLGAILLFIGWLGFNAGSAGE
                     MNDVAINAFIVSIISAACGFLSWVVLEWLIYKKPTILGGLSGLVAGLVGITPACGYVD
                     IYASLVIGTLSSVFCYFGLSFIKYKLKWDDSLDAFSLHGIGGIWGGIATGLFASAKVN
                     PNVIAQNALGEGFFISGSLELLKEQIFAIVICVVLSALISFVIFKIISCFTDLRVKEE
                     VEQKGLDVSLHGEKAYTLA"
     gene            complement(26546..27544)
                     /gene="mnmH"
                     /locus_tag="SF008_000278"
     CDS             complement(26546..27544)
                     /gene="mnmH"
                     /locus_tag="SF008_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HEG8232590.1"
                     /translation="MLSEVEFVEFQKENFSFLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKAMGASYICQNTAKHILEITQNFRIGEKVGIYCSRGGLRSKS
                     IAVILSELGFRVVRLKGGFKAYRTFVTHYFENEINFDFFALCGNTGCGKTELLEQLPQ
                     AINLEKMANHLGSSFGDILGKQPTQKAFEAELFHNIQNLENFAFIESESRKIGDIILP
                     LKFYEKMQKAFKIYCFCSLENRVRRIQKIYQEKMTPLKFQQCVQKISPYISLNLRQDL
                     LQSYERKEWQKLIVMLLEYYDKTYKKPDKIDLELNTDDILKAKEELLDHFKAQLLF"
     gene            complement(27534..28019)
                     /locus_tag="SF008_000279"
     CDS             complement(27534..28019)
                     /locus_tag="SF008_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEG8232591.1"
                     /translation="MQYLYAPWRSEYFEKEKSICPFCDCANKIKSDEELGVIFRAKHC
                     FGVMNRYPYSAGHFMVIPYIHEEHIENLSDEIWQEMSYFVRLGVKILKEQIHANGVNI
                     GMNLSKDAGAGIAFHCHYHLVPRWSGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNA
                     Q"
     gene            complement(28029..28805)
                     /gene="trpC"
                     /locus_tag="SF008_000280"
     CDS             complement(28029..28805)
                     /gene="trpC"
                     /locus_tag="SF008_000280"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HEG8232592.1"
                     /translation="MILDKIFEKTKEDLKERKLKLPYDMLGRSLASNPFFPKDVIKAL
                     KRVEKEVKIIAEVKKASPSKGVIREDFDPLSIALNYEKNKAAAISVLTEPHFFKGSLE
                     YLSLIRRYTQIPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFAGADIIGINHRNLEDFTMDMSLCEKLIPQIPNSKIIIAE
                     SGLENKEFLEHLQNLGVDAFLIGEYFMREKDEGKALKALL"
     gene            complement(28802..30079)
                     /locus_tag="SF008_000281"
     CDS             complement(28802..30079)
                     /locus_tag="SF008_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HEG8232593.1"
                     /translation="MYRYLLFVLAAFFLAACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKQYKEARDEFLSLYQDYNNTNFLENAFLLTLANNLDKQAELNNLAKPYLNQN
                     DNLKRLSALYALNSNDINNAQKLMKELLTKKDSDPRNLELYGDILVKKNDLKNATKYY
                     RSAYNQVQNEEILFKLIGIYAILNDTLNIKNVLEFSRKTNGCTLKTCVLLAKIYFDEK
                     NIEALKSIYKELYQLTKNKSFVLALVELLNSQGKTEEALKISLQYDLDDDIKLALYQN
                     LKRFDDAKKMSLALYHKTKNKEYLLRAAVFEFEAANEAKKITPKVIDSVKEKFEQAID
                     KDSNALYLNYYGYLLIDYDLDVKKGIELVKLALEKDPQNLYYLDSLAWGYYKLGDCKQ
                     AWEILKQTLDDKEFANSDESKAHIKAIKACIKP"
     gene            complement(30052..30426)
                     /locus_tag="SF008_000282"
     CDS             complement(30052..30426)
                     /locus_tag="SF008_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEG8232594.1"
                     /translation="MIFDKNFSYAFDENACEKCGGKCCTGESGNIFASKEELEALRKH
                     LNLESKEFAEKYLRKVGFKMSFKEVEFEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLS"
     gene            complement(30416..31117)
                     /locus_tag="SF008_000283"
     CDS             complement(30416..31117)
                     /locus_tag="SF008_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HEG8232595.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILANFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIELIEKNLKSNQIQGDIFHDDFNQFQSIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLTKANSMLKPNGTLYFCYEALALDE
                     ICFILKDMKIKITKLCFVHTHQNKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFRLKSYDI"
     gene            complement(31123..31272)
                     /locus_tag="SF008_000284"
     CDS             complement(31123..31272)
                     /locus_tag="SF008_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232596.1"
                     /translation="MIKIAFFITFVISFLTAQSPVNFKEDNNITKEQNIFKEQPPKRI
                     KIPTH"
     gene            complement(31290..31366)
                     /locus_tag="SF008_000285"
     tRNA            complement(31290..31366)
                     /locus_tag="SF008_000285"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(31330..31332),aa:Arg,seq:cct)
     gene            complement(31395..33470)
                     /gene="fusA"
                     /locus_tag="SF008_000286"
     CDS             complement(31395..33470)
                     /gene="fusA"
                     /locus_tag="SF008_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEG8232597.1"
                     /translation="MSRSTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLVSEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            complement(33483..33953)
                     /gene="rpsG"
                     /locus_tag="SF008_000287"
     CDS             complement(33483..33953)
                     /gene="rpsG"
                     /locus_tag="SF008_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEG8232598.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            complement(34023..34409)
                     /locus_tag="SF008_000288"
     CDS             complement(34023..34409)
                     /locus_tag="SF008_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEG8232599.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGAAK"
BASE COUNT        12009 a         5958 c         4726 g        11858 t
ORIGIN      
        1 tgggtttgtg atgaaatttc ggaattttga gtctcattta tagtgatatt ttttgctcgt
       61 acaattaatt ttttatctaa tttaatatat aattgttcca attttaaaaa atcaaattgg
      121 atactagaga tgacaattcc atttttaagc actataaaca aagctaatat aagcacaaca
      181 aaaaatacaa caatatataa aattttcttt ttcatacgca acttcttttt gatatttatt
      241 ttggggattt tttattatct aactcagcct ttaaaaagca attctgtggt atttattccc
      301 caaggttcaa tttctcaaat tataacatat ttaaagcaaa ataaatatca gatgagtaat
      361 attgataaat atattttatt ttttttagga caccctcaat caggctggat caacataggt
      421 acaaaagatt taaatagagc tgaatttcta cataaactca ctattgctaa agcagcactt
      481 caaaccatta ctcttattcc aggagaaaca agcgtaatct ttctagaaca agcagccaaa
      541 caacttggac ttgataaaga tatactttta aaagaatttc aagctcaagc tccttatgat
      601 gaaggagttt ttttaccaga aacttataaa atcccgaaag gcattacaga aaatctactc
      661 attcaaatgc ttttaaacca tgctgaaatt tccaataaaa aaacttctga gaaaattttt
      721 ggtgattata atccaaaaaa atggcaccaa tatatcatca tcgcttctgt aatacaaaaa
      781 gaagctgcta atgacaatga aatgcctata gttgcaagcg taatttacaa tcgacttaaa
      841 aaaggtatga aacttcaaat ggatggaact ttaaattatg gaatttattc ccatgtaaaa
      901 gttaccccac aaagaataag acaagataat agctcttata atacctataa atttacagga
      961 ttgcctaaag aagcggtttg taatgtttct ttagctgcta ttcgtgcagc tatttttcct
     1021 ttaaagacag attatttata ttttgtgcgt gataaaaata ctggagttca tatttttagc
     1081 acaaatatag atgatcacaa taaagccata aatttacaaa aaggaaaata atttttgata
     1141 tttttataca aaatagttaa attggaacag tatttgcttg ttaatattaa aaattataaa
     1201 aaggataaaa aatgattaac ccatttaaat caaaagaact agtcactggt gctttagcgg
     1261 gtagaaatct aagaaatcaa ctcatcaatg ccaatcttgc aaatgttgat actccttttt
     1321 ataaagcaag agatattgaa tttgaaacag ctttggtaaa tcgtgcaaat gaaattttca
     1381 aaaaaaatga caaaaaagaa ttagaattgg cagtaaccga agaagggcat caaaaacctt
     1441 ggaaatttcc tgatcctggt aaatctacta tttacttaag agatggtcat ttggcaagaa
     1501 atgatgcaaa tactgttgat ctagatgtag aaactacaga aatgagtaaa aatacagtta
     1561 tgataacagc tcttgatgga gttttaagaa gacagagcaa tatctttagt tctatacttg
     1621 atgcaagctc taaattaagt taaaggtaaa ttatggcata cttaagtgat tttgatatta
     1681 gtggttatgg tttaagtgct caacgtttta gaatgaatgt tattagctct aatatagcta
     1741 atgcaaacac tacaagaaca gctgaaggtg ggccttatag aagacgcgaa gtgatcttta
     1801 aagcaacaga ttttgataag cttttaaatg agcaaattaa caaagataat aattttttaa
     1861 aatatgaaaa tcctttaaat gatccaagtt cgccagaaga agctaaacct gctattcaaa
     1921 gtgttgtagt ggataaagtg gtcagagatg acaaagattt tcgtatgaag tatgatccaa
     1981 gccatcctga tgcaaatgct gaaggttatg tagcgtatcc aaatgtaaac cctgttattg
     2041 aaatggcaga tttgattgaa gctacaagag cttatcaagc caatgtaagt gcttttacaa
     2101 gtgcaaaaac tatagctcaa agtgcgattg atttattaag aggataataa aaaatgaaca
     2161 atattaatga tttaagatta aataataata tttcaaatac caacaaaagt caaaattcca
     2221 caggaattgg tgatgaattt gccaagatgc ttaaaaatga aatcgatgat ttaaataaag
     2281 cacaagaaag tggagaagct gcaatgacag acattgccac aggacaagta aaagatttac
     2341 atcaagcagc tatagctatc actaaagctg aaagcagcat gaaatttatg ctagaagtaa
     2401 gaaataaagc gatcagtgct tataaagaaa tcacaagaac tcaaatttaa accctaatgc
     2461 aagaatataa aaaaaatagg gtttcaaaag ttgcctttgc ctactgcatg gcacttttgt
     2521 ttatgattat ttttatcagc tctacttttt ttcttacatc aaaacgtcat atacctaaca
     2581 ctgaaaaaga tcaatacgct cttgctctaa gaggatcgat tataaccaaa gataatttta
     2641 ctatcacaag ttctaaacaa atttatcgtg ctgaaattga tcttagaagc attaacaaag
     2701 ataaatttga tctattttta aagctttttc aaatttatag tgggataagt aacgatcaag
     2761 tagcagatat taaaaaaaga atgcaaaatc aaaaaaaacg ctcttataat tttgttcttt
     2821 tacaaaactt agactccaag caagcaagct accttaaaga tcttgctaaa aaactttata
     2881 tacaaggttt tttcaaagct tttacaaata actcaggaag agttgaaaca agaggattaa
     2941 atatcatcga acatgaagaa gatagaattt acatgtcaaa agattctttt actcctatta
     3001 tcggttatac taaaatgata ttagatccag aaagtggaat tttaaaaaat ataggagtta
     3061 aaggtttaga aaaatactac gatgcatgtc taagccctgt tcaaaatgaa aaaattcaag
     3121 gacttaaaga tataggtgga aatattattt taaatctaaa ttcactacaa caaaaaaaga
     3181 tcaatggttg tgatttatat ttaaatcttt ctttaaaact gcaaaaaagt atagagaaag
     3241 ctatagatca aagaaatgag gatttaaaag ccaatgaaat catcgttggg gtaatggaaa
     3301 gtaaaacagg aagaatttta gctctagcaa gctcaaggcg ttatgaccca caaaatcgcg
     3361 gaaaggatct atcagttctt aatgcaagcg ctatagaata cggctatgaa gcaggttctg
     3421 ttatcaaacc ttttatcttt acaacagcct taagacttgg taaaataaaa atggatgaag
     3481 tgattaatac ttatggcggt tcttacaagc taggacgttt caccatcaaa gacgatcaca
     3541 aaatggacaa aatgactatg gaggaagtta taagatattc ttcaaatata ggcatgatac
     3601 aaattgctaa aagacttaac aatatagaaa tcgtatcagg gcttaaaata tttaaatttg
     3661 gcgaaaaaag tggtattgat ctaccctatg aacaaaaagg agaaattcca aatcctaagc
     3721 gcttaagaga tatagaaaaa tctgttttaa gttatggtta tggacttaaa acaaccttta
     3781 tacaactcct tgcagcttat aatgttttca acaatgatgg gttttatatc acaccacgtt
     3841 tagctgaaaa attctatcaa aatggacgct ttacaaatct tgatgatgat gtaaaaaaag
     3901 aaaaaattct ttctagcgaa gccgctaaaa cgatgcaaaa tgttcttata aatgttatag
     3961 aaaaaggaac aggaaaaaag gcaattacac aaggtattat tgcaggaggt aaaacaggaa
     4021 cggcaagaat agccgaaaga caaggttaca cctcaaatcg ctacaatgca tccttttttg
     4081 gttttgcaaa tgatttaaat cacgcctata ccataggagt tctcgtaaga catcctacta
     4141 aaccttatag ttattatgct gcacaaagtg ctttgcctat gtttaaagat gttgttgata
     4201 ttttaatcaa tgaagaattt ctaacgccta tacaagacaa taactaaact agcacaaaca
     4261 actagtttga tatatcttta gaaaatatca cctcaacagc acctataagt tcttcagcaa
     4321 tcttagcagc aaaagttgta tcattaagta ttgaaattcc ttcagctgtt gtgatttttc
     4381 ttactgaaat aagatgttca acattgctca aggttaaagt atcgatttct tttaaaattt
     4441 cttttccttt ttgaagattt ttaataatca aataaagctt ttcacgatct tcaacaactc
     4501 taagctcttc gatacttctt aaaagctctc ctaaattcga tctaatttta ttgtactcta
     4561 aagccaaaaa ttcattagaa gaactagaat atttcttaat atttgcttgg ataattttta
     4621 aatttttagt tgtttcggct aaatttttag ctgccatctt aaaggtaaaa attttatgat
     4681 tctttgtttc atcgttaata taaacttgtg ctttagttga aaaatcgata atagcttcaa
     4741 aaagaacctt tatcctagtt tgatacaaat agtccaaatc cacattttta ctaaaccact
     4801 ttttattttc taaaatttct ttaaaacttt tatcactttg tatatcttta cgactaaaac
     4861 ctatagcatg agcaacaatt gcataggtat tgttataaag atgctcgctt tctttcctta
     4921 aagcttcgat ggctgtgtca ctaaacttaa ccaaactact atcaagatat aaaggcttgt
     4981 ctttattctt atctttagga gcttttacta tcttatttaa aaaaagaaca atttgaggag
     5041 taaagaatga aaaaagcaca acaccaatta aattaaacaa agtgtgaaat aatgctactt
     5101 tcaaagctat atcttctatg tttaatacaa tggataaaaa attaagaaaa tgtataaaat
     5161 aaggaaaaat aagcactatt aaaaaagcta taccaaaatt aaaaatacaa cttgcaaacg
     5221 ctaatttctt tccttcaata ttggtactta aagaagctaa aacagccgtt acaactcctc
     5281 caacactagt acctaaagtt gctgctaagg aattttccaa actgatttgt cctgcaagta
     5341 aagcagcgac aataatagcc attataactg tgcttgattg tataactcct gtaagcaaag
     5401 cacctaatcc taaaaaaaca aaaactcctt taaaaccagc aaaatcaaaa cgagaaagat
     5461 caattatatg tttaaaattt tcaaaaccac ttttaatata atccacaccc aaaaagaaaa
     5521 atcctatacc aataaaaata ttacccaaac cttttaaaac actatctttt tgaaagaaaa
     5581 ataatactcc aataatcaaa agtgggatag ctagcattga aattttaata tttgtcaaac
     5641 caacaatcag ccaagagctt gccgtatttc ctaaatttgc tccaaaaata atccctatgc
     5701 ccgtacccaa agaaataagc cctgcactca aaaaagaaat cgtaataata gaaactaaag
     5761 ttgaagattg cataattaaa gtacttaaag taccaaaaag tatacttttt atctttgtat
     5821 cggttgactt cgctaaaatt ttttcaagca aatcaccact aaaaacttta aaacctatac
     5881 ctaaattagt cattccaata aagaaatatt gccactcctg ctaaaagatt agcaagctcg
     5941 tcataacgaa ttaaaataaa aatcagaact aaagtaaaaa tacttcatga aataaattta
     6001 aaatatttta aagaatttcc ttcttcttgc aatgcctaac cttttagttt ttcaaattca
     6061 tccatcagaa attctcttaa attttcagct tcttcttcgc ctttttctag atactcaagc
     6121 aataaatttt ctaattcttt taaaaaagaa aaaagttcat tttgccagat actatcgttt
     6181 ttattgctca aattcatggt ttgtatgaaa gtcaactctc tgcttaaatc cccaagtttt
     6241 tctaaaaatt catctttttg attagaattt tttaatgtta aattagcatt ttggatattt
     6301 tctttaaatt ctctgatttt ttcatcgatt aaatcacaaa attttggata aatatccatt
     6361 ttaataggct ctaaaagagt tcgctcatct atatttaaag taagcttttt aacagcaaaa
     6421 taaagagcta aaaaagacaa agctgctata agtaaataaa ttcctagcat taataaccct
     6481 taagggctag cattccgcca tctaaattga tgctttcaag tcccaatttt tcagctataa
     6541 attcagctgc aaccatgctt ctatggccac tacgacaaat aaaagcaagt tttttacttt
     6601 catctctttt gctttgaaat tcatctaaaa atttagcatt taaaagccct tgattatcat
     6661 ataaagccac acattgcgca ttagataaaa taccttcttc ccattctaaa ggagtacgca
     6721 catcaaaaat ttgatatgcg ttcaaatctt gctttgtcca aagacttgca gggatatttt
     6781 ctatcatgaa aaagccttat tgataatttt tgtaaggctt gcattaaatt cagcaggatt
     6841 atccactccc ataccttcgc ttagttttgc catatttaaa actagggttg ctatatctgc
     6901 actaaaactt tcgttgtttt taagacctgt aaaaatagcg tgttttggat tgatttctaa
     6961 aataggtttg aaattttgtt cttgacccat ttgttttaag agttgttgca tagcaaaatc
     7021 aggtttattt ttatcataaa ctatacaact tggactatct tttaaacgac tggttagtct
     7081 tacatcttca acttgatctt ttaaaagttc tttaaattta gctacaagtg gagcaaaagt
     7141 atttttttct tcatcgctta gttcattttt atcttctact tgattaatgg ctacaaattt
     7201 taaaccttca aattctagca taggagttac caaagaatca atctcatcat ccatgagtaa
     7261 aacttctata tttttttgtt tatactcttc aagcaaagga gaggttctta ataaactttc
     7321 attatttcct gctatataaa aaatttcctt ttgctcgcct tgaaggtcat ttttatactc
     7381 ttctaaagag cgtaaatttt cacctttggt acttttataa agcatgagtt ttaaaagact
     7441 gtctttttct ccgccaaaac cataaagtcc ttcttttaat accttaccaa aggttttaaa
     7501 gaaagataag tatttttctt tatcattgtt tttaagtttt tcaagttcac ctaaaatctt
     7561 tttaacgcta gcttctttaa caccttttaa aatttgattt tcttgtaaaa tttcacgact
     7621 tacattaagt ggtaaatctt ctacatcgat aatcccccgc acaaaacgca aataagttgg
     7681 taaaagttct ttatcgtcat cgctgataaa tacgcgtttt acataaagtt ttaagccact
     7741 ttgataatcc acacggaata aatcaaaagg tgcgttttgc ggtatgaaaa ataaagaatt
     7801 atattctaat tttccttcac ttttagtgtg aagataaagt aaaggtttgt ttgaatcatg
     7861 aaaattttgc tcataaaatc tttcataatc ttctgcttta aggcttgatt tttgcattct
     7921 ccataaagca ttggctttat tgatttgaga aattttaagt tcagtttttc cttcttcttc
     7981 tccttcttta gcaggagtaa attcttcttt ttccatgaaa attggaaatt gaatatgatt
     8041 agaatatttt tctataatgc tttcgatttt ataagtatta gcaaactcat catcttttaa
     8101 gtataaagta atgcttgttc cttgttcttc tttgtttgcg tcattaatct cataaccatt
     8161 tgcatcagaa ctccaaagat aagctttatc atctaaagct tttttgctta aaacttcgat
     8221 tttactagcc accataaaag cagaataaaa acctactcca aattgtccta tgagttgaga
     8281 atctttttta gcatcaccac ttaaattttc taaaaaactt ttagtaccgc tttttgctat
     8341 ggttccaagg ttgttaataa gatcatcttt atccatacct ataccattat cactaatgct
     8401 taaagttttt ttatctttgt caattttgat ttcaatttta ggttcgaatt ttaagctttt
     8461 atatttatca tcacttacgc ttaaaaaatt aagtttgtct aaagcatcgc ttgcatttga
     8521 aataagctct cttaaaaaaa tttctttatt agaatataaa gaatgtatca taagctgtaa
     8581 aagctgattg acttcggttt gaaattgcat tttaatttcc tttgtaattt tttaaagtgg
     8641 tattttagca aaaaatacaa attctaaagt aaatttaaag atttatttga aaattaaaaa
     8701 gccaagccat gcggcaaata agcaaagaaa gacatttaag atgatattta acgcaaaatt
     8761 aaaataattt ccactttgca aaagaagtaa attttgataa gaaaaagtag aaaaagttgt
     8821 aaaagctcct aaaaaacctg tacttataaa gcttttaagc aaaggagata aacctttatt
     8881 ttgtgcataa gaaaacaaaa gtcctatgat aaaagaaccc aaaacattta caaaaagagt
     8941 tccaaaactg atagaataag gaaaaaattt attcactaaa tttatagaaa gcattcttaa
     9001 gattgctcct ataaatcccc caaaaccaac tactagaaga gtatttagca aagcttgact
     9061 ctttcttgat cgagtaattc ttgcattttt tttctggtgt tttcaagcca tttttcatca
     9121 tttgtatcga ctaaatccat acaaatgatt ttaagtactc cgctgcttgc gctaaaactt
     9181 tttgtgtcta aaatttttgc agaatccaca attaaaatag gttgaacttt aagatttaat
     9241 ttttcactta aaatttttgc tccactttga aatttaagca ttttttcatt tttagatcta
     9301 gttccttctg gaaaaatagc caaaacccta tcttcactaa ttctttcttt tgcttctttt
     9361 aaaactcgta ccaaatcacg tggatttttt ctatctatac aaagaagttt tggttttttc
     9421 atagcaactt tgaaaatagg aatttctcct aattcttttt tggcaatcca gcataaattt
     9481 ttaggatata attcttctaa agcgatgata tctaaagcac tttgatgatt cattaaaatc
     9541 atctgagctt gcggattaaa agtaccaatg atttcttgtt tataagagat agtatatctt
     9601 tgaaatttag cccaaatttt gcggattttc caaagtgtgt tttgagattt tgtaaagcaa
     9661 aaacaaaaaa tcaccaaagc aacacttaaa acaaaaaaaa tccaaaaata aagagcttta
     9721 atttttttgt aaatcatctt tattaaccca acctattttt ccatcagaaa acagtacttt
     9781 aatataattt tgtcttttgc ccaaaacttc tactttttca tctgcatttg ccgtataaaa
     9841 ataagttgaa ggctctgtag gtaaaatttt agccctagaa ccagccttga taattgcatt
     9901 ttgagtattg gtatctacaa gaaaactaag cgcaaaacaa acaactgcca aagccagaat
     9961 aatgtaattt tttctccata caaataaaac tccaaataaa accgctaaaa accacaaagc
    10021 atattgttta taaatattta agtctttatt tacaggattt aaatcactct gagtactaat
    10081 ctcatcgtca ctaattttta attttaaatt tatattttca agctttttac tgttcttatt
    10141 gaaatacgaa aattcaaaat ttgttttact taatggcaaa atagcataat aaaaagcact
    10201 agaagcatta aagtctcctt ttaaattttc aataccttgc ttttgaattc cttctataaa
    10261 aaagctttta agatttgtat tggttgcgtt tagttctacc atcataatga tattagcatc
    10321 atcaaaataa ctcgctttaa cttttttaat ttccaaagaa cttgccacaa ggtgtgaaaa
    10381 atccttattg gataaagtat tttcaaattt gataggatta agattgatat cagcctcttg
    10441 aaaagcttca ttatttctaa gaagtttgat agaaatttta ctcaaactag catttgaatt
    10501 tttggcttca aaccataaag ttgttttata ttcattgttg ataaattccc attttgcatc
    10561 tggatttaaa aaagataaat tagttttttc tacgcttatg ttaaaatcaa attttgtatt
    10621 ttccgtagtg cgagcataga tcgtaatagg aaaaacttct ccaacatata ctctacttgg
    10681 atattcatca tttgtaagaa ccaaactccc tttggctaca aaaggatcat ctacattgct
    10741 ttcaaagtca ttgttttcat cacttggcgg aatattttga taaatttttt gttcttcttg
    10801 gggtaatttt tgtaattctt tttgcatatt ttcatcttgg ccgctaaata cagaaatttc
    10861 acccctggca aacaatacaa caatgctaaa aattaaagtt aataaaattt tcaagataaa
    10921 aagcctttaa gcatttttaa acctacatca ttacctagaa ctttttcaca agcacgctca
    10981 ggatggggca taagtccaaa gatttttttg ttttcatcac aaattcctgc gatatcaaat
    11041 acagaaccat ttggatttgg ctcgtatttt agaataataa gatctttatc ttgcaattct
    11101 tttaaagtag tctcatcagc gtaataattt ccctctccat gggcaattgg taaactaata
    11161 atttcatctt ttttgaaatt tttcaaaaag gcattatcat tagaaaccac tcttaaactt
    11221 tggttttttg agataaagct aagattgttg ttatgcttca ttgcaccttt taaaagacca
    11281 ctttcaagta aaatttgaaa accattacaa atacctaaga tatatcctcc tttttttgca
    11341 tgattaaaaa caccttgcat agcaggagca agttttgcaa tagctgcgca tcttagataa
    11401 tctccataag aaaatcctcc tggtaaaaca actaaatctg catcaaattc tttttcttca
    11461 tgccaaacaa tctgcgtttt tactccaagt ttttcaaagg cataagctgt atcaatttca
    11521 caatttgtcc ccggaaatct aataatagca actttcattt tactctttct caattacaag
    11581 ctcataatct tcaatgacgc tatttaccaa caactcttca cacatttttt ttacttgttc
    11641 tttggctaat ttttcatctt tctcatcaag agaaattttg atttgttttg ctatttttac
    11701 ttctttaaca ctattaaaat ttaaagaatg caaagctttt tccaccgctt taccttgtgg
    11761 atctaaaacc ccatttttta aagaaatatt tacaataact tccatatttt tccttaattt
    11821 aatattcttt ttaaaacttc ttcataagcc atttttacat tacctagatc ttgacgaaat
    11881 ctatctttat ctaatttttc attgctaaat ttatcccaaa atctacaact atcagggctt
    11941 atttcatcag ctaaaacaag ctcattatct ttagttaaac ccagttcgat tttaaagtca
    12001 atcagcctta aatttttatt atcaaaaaat ggagttaaaa tagagttaat ctttctagcc
    12061 atatttttaa tttcactaat ttgagcttca ttttgcacta aatttaaaat caaacaatgc
    12121 tcatcattga taaaaggatc gcctaaggca tcatctttaa gacaaaattc caccaaagca
    12181 aaaggtagca cagtgccatc tttaatgccc agtctttttg taagagaacc tgttgcaaca
    12241 ttgcgtacta taacttcaat aggaacaatt ttacattttt taaccacttg ttctgtatcg
    12301 cttatagttt ctaccaaatg ggttttaatc ccattttttt cgagcaaatg aaaaatttca
    12361 gtactgattt tacagtttaa tgcacctttt ccactttcat tgcctctttt ttctgcatta
    12421 aaagcagtta aatcatcttt aaactcacta attagtaaat tttcatcatc agttttgaaa
    12481 agttttttac cttttccttc gtagagcatt tctttttttg tcattttatt gtccttgttt
    12541 gatatttaaa attttaatag tatcaatagc cgattttaac tgtgcgtcat cattgatttg
    12601 tttttgactg attagatttt tattgtcttt attttcttgt ttatcttctt ttttattttt
    12661 atctattttt tcaagctcac tttctaaatg ttgttttaag tcgctttctt ttatagaaaa
    12721 accatcttct tgagtattta ctttacctgg aaaaacttca atatcaggtt ttacacccac
    12781 tgcttgaata gtacgtccgc ttggaagata atatcttgcg atagtaagcc ttaaagcttc
    12841 agttttatta ataggtatga tttgctgaac actacctttt ccaaaagtat tttcacccac
    12901 aataacaccg cgtttaagat cttgtaaagc tccacttacg atttcacttg cactagcact
    12961 tccaccattt acaagcacaa ccaaagaagc attagaaatt ttgtttttag gatcggcttt
    13021 atattcttga ttttcacttg cgatgcgtcc tttttgagaa acaataacac ctttatctac
    13081 aaataaattt acaagtccta tggcttgatt taaaagtcca ccaggattat ttctaagatc
    13141 taaaataact cctttaacat taggatattt tttaagttct ttacttgcca catctacaac
    13201 atttttatca aaatttgtaa ccctaagata aagaatgttt tcattttcta tcatttttgc
    13261 ataaacactt tctatcttaa taatttctct tgtaagtgta acatcaaaag gttttgttgc
    13321 accttttcta aaaatggtta aagtgatttg agtttttggc ttaccacgca ttttatctac
    13381 agcatcattg agattaattc ctaaagtggc ctcatcatta atttttaaaa taatatctcc
    13441 tgattttatc cctgctttat ctgctggtgt tccttctata ggagaaacaa ctgttaaagc
    13501 accatctttc atacctacgg ttataccaag gccgccaaat tcaccattag tttgaatttt
    13561 catatcatta aaatcttttt catttaaaaa agaagaatgc gcatcaagat tgcttaaaag
    13621 ccctgataaa gatttatcca ccaaatcgct gatattttga tcatccacat agtattgctc
    13681 tactatagca agagtttttg taagcttatc taaagcttct aggcgttttt gaacctgctc
    13741 ttctttttga tcaactttag cttgtaaatg acttgttaaa aatagacata aaatgaaagt
    13801 agtagcaaag cctgcaagac ccgcaaaaaa tcgttttgtt ttcaaaataa gctccatcat
    13861 tgagttttag tttaattagt ttaaagagta aattttaata aaaattgctt aaaacttcgt
    13921 aaataaattt aaattcttaa aaatatgtta aaatagacta aaaattccaa aaagaaagtt
    13981 aatacaatgt gccaagaaaa acatactcat acacattctc aaaaacatct taaagcagtt
    14041 tgcaatcgtc taagtagaac catagggcat ttaagcgcta ttaaaagaat ggttgaaaat
    14101 gacaaagact gtagtgaaat tttaatccag cttgctgccg taaaagccga agttaacaat
    14161 actgcaaaaa tagttttaaa agaacattta gctcattgta tggtacatgc tatagaagaa
    14221 aatgatattc aaagtataga agaattaaac aaggctatag atatgtttat gaaataatct
    14281 aaaattagtc atttgtccta ttatttaaaa aattttactc aattaacttg acattatatg
    14341 actaaagtta tataatagca agtatataaa ctaaataaag gataaaacat ggcaaatata
    14401 caagattttt taactgataa tatgctttca aatcttgaaa gtgcagcatc tttagctata
    14461 cattctaaaa ataatgaagt tgtaccttta catcttttat gggctttaag cgtagataat
    14521 gcaagtattt taaatcaaat tttaaataaa ttaaatattt ctaaagaagc cttagagctt
    14581 gaaattaaaa gcagaatttc aaaacttgca acgagttcaa atgtaaaccg tgaaaatata
    14641 cgcttttcca atgaacttat aaattcatta gaaaatgcta aaggattaat gagtgctaat
    14701 ggagatagtt atttaagtgt ggatacttgg cttataagtg aaagtcaaaa aagtcctatt
    14761 aaagaaattt tggcgcaatt tttagattta agagaatttc aaaaagagct tgaaagtcta
    14821 agagcgggac gcaaaatcga tagcaaaaca agcgatgaaa ccttagacag cttaaataaa
    14881 tttggtatag atttaacctt aaaagcaagc gagggtaaac ttgatcctgt tataggcaga
    14941 gaagaagaaa tcgaacgttt gatgcaaatt ttaatacgca aaaccaaaaa taaccctata
    15001 cttttaggtg aaccaggcgt aggaaaaaca gctatagtag aagctttagc acaaagaatt
    15061 atcaaaaaag atgttccaaa atctttgcaa aataaaaaag ttatcgctct tgatatgagt
    15121 gctttaattg caggtgcaaa atacagagga gaattcgaag atagattaaa agctgtggtt
    15181 aatgaagtga taaaaagtga aaatatcatt ctttttatcg atgaaattca cactatagta
    15241 ggagctggag cgagtgaagg cagtatggat gcggcaaata ttttaaaacc cgctcttgca
    15301 agaggtgaac tccataccat aggcgcaact actttaaaag aatatcgtaa atattttgaa
    15361 aaagatgcag ccttgcaacg ccgttttcaa cctgtaaatg taggtgagcc aagtgttaat
    15421 gaggctttgg ctatgttaag gggtataaaa gaaaagcttg aaattcatca taatgtaact
    15481 ataaatgata gcgctttagt agctgcagct aaactttcaa agcgttatat agcggatcgt
    15541 tttttacctg ataaggccat tgatttaatc gatgaagctg cagctgaact gaaaatgcaa
    15601 attgaaagcg aaccaagttc tttaagaaaa gtacgcaaag atatagaaac tttagaagtt
    15661 gaaaatgaag ctttaaaaat ggaaaatgat gaaaaaaatc aaaaaagact cgatgaaatc
    15721 gcaaaagaac tagctaattt aaaagaaaaa caaaatgccc taaattcaca gtttgaaaat
    15781 gaaaaaagtg tttttgatgg cataagtgct aagaaaaaag aaattgatct gcttaaaaat
    15841 gaagcttctt tggctaaagc tagaggtgaa tttcaaaaag cagccgagct agagtatgga
    15901 aaaattccaa gtcttgaaaa agaagtagaa attttagaag ataaatggaa aaaaatgagt
    15961 gaaaatggag ttttacttaa aaatcaagtg gatgaggatt tggttgctgg aattttaagc
    16021 aaatggacgg gtattagcgt gcaaaaaatg ttaacttctg aaaaacaaaa attcttagaa
    16081 gtggaaaaac atttaaaaga aagtgtcata ggacaagata aggccttaag tgctttagct
    16141 agagccatta aacgtaacaa agcagggctt aatgcggaca ataaacctat aggaagcttt
    16201 ttatttttag ggccaacagg ggtaggaaaa acacaatcgg ctaaagcttt ggcaaaattt
    16261 ttatttgatg atgaaaaagc aatgattcgc tttgatatga gtgaatttat ggaaaaacat
    16321 agtgtttcaa gactcttagg tgcgcctcca ggatatatag gacatgaaga aggtggagag
    16381 cttactgaag ccgtacgaag aaaaccttat agcgtgcttt tgtttgatga agttgaaaaa
    16441 gcacataaag atgtatttaa tgtgctttta gggattttag atgatggtag agcaaccgat
    16501 agcaaaggtg taacagtgga ttttaaaaat accattatca ttctaacttc taatatcgcc
    16561 tcaagtgcca ttatgaattt aagtggaaaa gaacaagaag atgcggtaaa aaatgagtta
    16621 aaaaatttct ttaaacctga gtttttaaac cgtttagatg atattatcac ctttaatcca
    16681 cttggaaaag atgaagctta tgaaatagtc aagcttttat ttaaagattt acaaatgagc
    16741 ttagaaaaca agggaataaa agcaagttta agcgaaaatg cagccctttt aatcgctaaa
    16801 gatggttttg accctgattt tggtgctaga cctttaagaa gagctattta tgatcttata
    16861 gaagataaat taagcgatat gatacttgct gatgaacttc atgaaaatga tagcattatc
    16921 attgatgcaa aagatgatga aataatcatc aaaaaagctt aatcattttg aaagtagatc
    16981 tttctacttt caaaatataa tctcgctttc attaaatttc atatttactt ttggtaatgg
    17041 tgatttggtg gtataataag cactttctcc tttataattt ccacgataaa ctccattagg
    17101 aatgctaaat tttctagttg tatcagggaa tttttctata tattgagtta aaaattctct
    17161 aaacacagga gcagctgttc tagccccacc ttctgtataa cgcataggtt tgttgttatc
    17221 atttccatac caaatgattg cttctatttc aggcgtaagt ccacaaaacc aagcatcaac
    17281 acttttattc gttgttcctg tttttcctgc tatttctata tcttttactc ttgcattacg
    17341 ccctgtgcct ttttcaacaa catttctcat catatctaaa accagaaaac tttgcgcttc
    17401 atcgctgact ttacgctcat ttgagttaaa ttccatgatg gttttaccgg ttttatcctg
    17461 aacttgtctg ataatttgag gatctttaat cgtaccatag ttcccaaaca tggtataaaa
    17521 tttcgaatac tccaaaggag aaataccaaa acttcccaat acgattgata aattaggcgg
    17581 tatatcttta aatccaaatt ccattagttt agagtaaaga acatcaagcc ccatatcaag
    17641 tgcgagatta atggtagcta aatttcttga tcttgttaaa gcttctttta aggtaattaa
    17701 acctaaaaat ttaccccctt catttttagg tttccaatcc tcattattac ccgctccacc
    17761 ttcaaaaatt ctagaaatat cagcaatttc actcataggc gaatatccta aattaatcgc
    17821 cacttgatac acaaaaggtt taaaagagct tccaggttga cgcatacttt gagtagcgcg
    17881 gttataatta cttttttcat aatcaactcc acctaccaaa gctaaaacat caccactttg
    17941 atgatttacc acgaccatag ctccgttcaa agtgcttaaa tttgcatctt tatcgcgttt
    18001 tactatctca tcataaccaa attttaaagc attctgtgcc atattttgaa catctaagtc
    18061 tatatttaaa atgattttat atccacctgt ttttaagtct ttgatattag ggcttaattg
    18121 tttaatcact tcatctacga cataaggagc agcattttga gtaagcgtat catcataaac
    18181 ttgcggaatt tctttaatgg ctatatcata atctgctttt gaaatccaac ctagattata
    18241 cattcttgaa ataacattat ttgctcttga aatggaaaga tctaaatgct ttgtaggatc
    18301 ataactgcta ggtgcttttg gcatacctac taacatagca atctctttaa ggcttaattc
    18361 atttaaattt ttatgaaaat accccaaagc tgcggttttt actccataat acccatgtcc
    18421 aaaaaaaata aaatttaaat acctttctaa aatttgctct ttagttaaaa tggtttccat
    18481 tttataagca agcaaagctt cgcgaatttt acgcgtaata gttctttcag gggttaattc
    18541 cgtgttttta ataaattgct gggtaagagt ggaagctcct tccatggttt ttccaccgct
    18601 ttttatgatt tttacagcag ctctaaaaat ggcatcgata ttaactccat tatgttcaaa
    18661 aaagcttgta tcttctatag caaccaaagc ttctataagg cgtggaggaa gctcttcata
    18721 aggagcgtaa aaacgatgtt gttcaaaaat attagccaca agcttgccat ttctatcgta
    18781 aatttgtgtt gtaagaggag gtttgtattc tttaaaagta taaccctcag tatcagcact
    18841 tgtgaaaaga taagccacat aaataaatcc agctataaac aaaagagtaa aaaatgaaaa
    18901 aatatatttt aatattttca taaataagcc tttaaagttt ggatatcaag ccctaaagca
    18961 gtgcttagat ttcctacttg ttgggtgatg aaattttgat gaaaaccctc acacataata
    19021 caacccgcct tgcctttata aagatcattt tctacataat ctcttaaagc attttcatca
    19081 aaatttttaa aataaagtgt agtttttgaa agagaaaaaa ctcttttttc aggttttaca
    19141 agcaaaaaag ccgataaaat acttgcatac tttccatttt gcaaggcaag catttcataa
    19201 gcttcttttt tatcctttgc tttggtaaga attttttcat ctatacaaac tatactatct
    19261 gcaaaaagca aattttggtt ttgaaaatct ttgcctaaag tacttaaaaa ttgtctttct
    19321 ttttcaagaa ctattttttg aacatataaa aaaggtgaaa tatttttatt taaattttca
    19381 tcataatcaa aactaacttg cctaaaatca atctttgcgg ttttaagcaa gttagctctt
    19441 gaaatggaac ttgaagcaag aattaacatt aaagtgcttt ttctatcgtt tctaagcttt
    19501 gttttaaagc ttcattgatt ttgcttaaat cttttccacc tgcagtagca aaatcatctc
    19561 ttccgccacc atttccacct aaaatttgcg ccgcttcttt aaccaaagct cctgctttta
    19621 aaggcacatc tttaacgcca gctgctaaag tgattttttc atcttttact tggataagta
    19681 aaatcaccgc tttagcaaat ttgtttttaa aatcatcaat catagcttta atatcgccat
    19741 tatctatacg ttttacgcaa atttcaacac cttggatatt tttagaatca agctcggttt
    19801 tacttgaatt tttaagctca ttttttaaac ttaaaatttc atttttaagc tttttaatcc
    19861 cgcttaaaat atcattattt ttaagttcat cttttacttt agaaagttct tcgagttgat
    19921 tttttacaaa ttctaaagcc gctttagaaa ccacagcttc aatacgtcta actccagcac
    19981 tcacaccact ttctttaact atgtaaaaac ttcctatttg agcagtattt ttaacatgag
    20041 ttcccccgca aagttctttg ctttcaccta gagttaaaac acgcacattg ccttggtatt
    20101 tttcattaaa caatgctata gcaccgcttt ttttagcttc ttctaaaggc atattttcta
    20161 agatagcttc gcttgagttt ataatcattt tattgactct tttttcaatg ctttctagct
    20221 cttctttgtt taaagcttta tgatgagtaa aatcaaatct tagtttattg ctttcaacca
    20281 aagatcctgc ttggcttaca tgagaaccta aaatttctct taaagcatga tgtaaaagat
    20341 gagtggctga gtggtggcgt gcgatttgct ctcttttttc tgtatcgatt cttgcatgaa
    20401 ctatatcgtt aacttttagt tcttcgcctg cttttataaa gctaagattg agattaaaaa
    20461 acttttgcgt atctaaaact tcacgcttag ctataaatcc actatcagca ctttgccccc
    20521 cacttgttgc ataaaaaggt gtgttttcaa gcatcaccca acccacatct ttaagggtgg
    20581 aaacttcttt aaaatcttca tctaaaaggg ctaaaatttt actttcgcat tctgcttttt
    20641 cataacctac gaaatgattt tctccaaatt tttcaagtaa gtttttaaaa tctccgcttg
    20701 cagttttatc tccacttcct ttccaagaag ccttagcgcg tgctttttgc tcattcatga
    20761 aaagttcaaa tttttcttca tcaactttaa gatttttttc tcttagcata tcagccgtta
    20821 aatcaagcgg aaaaccataa gtatcataaa gcttaaaggc tacttctccg ctaaaaattt
    20881 ctttagtgtt tttaagctct tcattaaaaa tttcaatccc attttctata gtgcttaaaa
    20941 atctttcttc ttcaaggcga atttgttctt ttataaagtc ttttttctca ttaagatagg
    21001 tataatgtcc gcccattaaa tcgcacacaa tatcaactag tttatacata aaagcttgtt
    21061 taaaacctag caaatatcca tgtcttaaag cacgacgcaa aatacgacgc aaaacataac
    21121 ctctaccttc tttatcaaaa cttacccctt gtgcaagcaa aaatacactt gatcttatat
    21181 gatcagctat gactctaaaa cttgctccgc tttcataaac ataagtttta ttacaaagtt
    21241 ttgaaatttc attgatgatt ggcataaaaa gcgagctatc aaaattgcta aatttacctt
    21301 ctttaatcgc tgttaccctt tcaagcccca ttcctgtatc aatgcttggc tttggcagtg
    21361 ggctaagcac tccatcagca cttctttcgt attgcatgaa aacaagattc cagatttcta
    21421 aaaatctatc tccatctccg cccatataat cttcgcttga gttaaaatgc tcttgtcctt
    21481 ggtcataaaa aatctcacta caaggaccac aaggaccagt atcgcccatt tgccagaagt
    21541 tatctttatc gccaaatttg taaattcttt ctttttgaat gtgtttttgc catagattaa
    21601 aagcttcatc atcgttttca tgcacggtta cataaagtct atctttaggt agttttaaaa
    21661 cttcagttac aaattcccaa gcataagcta tggcttgttc tttaaaataa tccccaaaac
    21721 taaaattccc aagcatttca aaaaaagtat gatggcgtgc ggtatatcct acattatcta
    21781 agtcattgtg ctttccaccc gctcttatac aagtttgaca gcttgttttg cgtggagggt
    21841 ttgggcgtgg aatttctcct gtaaatatac ttttaaaagg caccataccc gcattagtaa
    21901 aaagtaaagt tgcatcatca ggaactaaag gacttgacgg ggttatctca tgtccttttg
    21961 atgcaaaaaa atccaaataa gcttttctaa tatccatgaa ttttcctaaa gaaattttta
    22021 taaaaacata tcataccaaa attactttaa attaagtaaa actaaaatac aataaacatt
    22081 tttatttaat tttatttctc taaggttttt tatgaatttt atcaatcttc aagcccaata
    22141 tctcgcatac aaagatgaaa tcaatgctga aattgaaagc gttttatcaa gctcttcttt
    22201 tataggcggt acaaagctta acgaatttga gcaaaattta gctcattttt taggtgttaa
    22261 acacgctata ggttgttcaa gtggaaccag tgctttatat cttgccttaa gaaccttaga
    22321 tattggcaaa gatgatgaag ttatagtgcc tagttttact ttcatagcaa cagctgaagt
    22381 tgtggccttg gtaggtgcaa aacctgtttt tgtagatata aatttatcaa attacaatct
    22441 tgattttgaa gcagtgcaaa aagcaataac tccaaaaact aaagctgtta tagtagtgag
    22501 tatgtttgga caaatgagtg atttaagggc tttagaagaa attttaaaag ataaaaatat
    22561 cactttgatc gaagatggtg cacaaagttt tggcgcaagt ttcaaaggag aaaaatcctg
    22621 ctctatagct aaaatttcat gcacaagctt ttttccttcg aagcctttgg gagcttatgg
    22681 cgatggcggg gctatttttt gccatgatga tgaaattgct aaaaaaataa gaattttact
    22741 caatcacgga caaactcagc gttataaaca tgaatttata ggtataaatg gacgccttga
    22801 caccttacaa gcagcgattt taaatgttaa gttaaaatac ctagaaaaag aattagacaa
    22861 aagacaaaaa ttagcacaaa tttataatgc aaatttaaaa aactgtcaaa ttccacaaat
    22921 taatccaaat gcttttagcg cttatgcaca atacagtgtt ttagttgaag atagagctag
    22981 tgtattgcaa aaatttgaaa aagctaatat accttatgct atacactatc caaccccttt
    23041 gcataaacaa ccttgcttta gtgagttttc aaatttagaa cttaaaaatt cagaatacgc
    23101 aagcgaacac atcttatctt tgcctttttc acctttttta agtgaagaag agcaagagca
    23161 agttatttgt atttttaaag attgattcca tgaaaatagg tatcataggc cttggaaaaa
    23221 tggggcaaaa ccacttaaat gaacttagta aaaattctca ttttaaactt aatgcacttt
    23281 ttgatctttg caaaaatcca aacctaaata tttttgatga tattttttat gatgatctgg
    23341 ataaattttt aaatcaaaat aatgatatta tcatcatagc aacacctaca aattcacatt
    23401 taacaatagc aaaaaaagtt tttaaacaat gcaaatgcgt tttaatcgaa aagcctttag
    23461 ctctaaattt aaaagaaata gacgaaattt caaatttagc taaagaatac agcataaaag
    23521 taggtgtagg tttttgcgaa agatttaatc ctgcggtttt agccctaaaa aaagagcttg
    23581 aaaatgaaga aattatcagc attaacatac aaagattttc accctaccca caaagaatca
    23641 gcgatgtagg gattttgcaa gatttggctg tgcatgatct tgatttgctt tgttttttaa
    23701 gcaaacaaga aataacaaaa accaatttgc ttaaaaaata cacccaagat caaacaagag
    23761 aaagtgaaag cattattcta tgtgagcttg aaaaatgtat tgctagcata catcaaagtt
    23821 ggaatagcac acaaaaacta agaaaaattc atcttattac taaaaatcat ttttatgaag
    23881 ccaatttaaa tgacttttct ttattaaaag atggaaattt tatagaactt actcaacaaa
    23941 gtccactttt ttcagaacac gaagctttgt taaaacttat cgataatcaa cccaatcatt
    24001 tagccagcac gagcgatgct tacaaagttc aagaaatttt agaaaggttt gcgtgaaatt
    24061 agttttattt ttaaatatgg gcggagctac gaatttacaa gattgtgaag tttttttaaa
    24121 aaatatgttt aatgatcctt atattttagg aatcaaaaat cgatttttaa gaaaatttgt
    24181 agcatggatc ataacaaagg ctcgcgttaa agccatgcaa gaaaactata aaaaaatggg
    24241 cggaaaatcc cctttaaacg aacttactca aagcctgtgt gacaagctta atttaaaaca
    24301 agatgaattt aaatttgatt ttgtaaatct ttatgttcct ccttttgcca cagaaatttt
    24361 gcaaaaatac actttaaatg caagtgatga aatcattctt tttccacttt atccgcacca
    24421 ttcttgcacc acagtaactt catctttaga agttctgcaa aatgaaattt caaagcaaaa
    24481 aattcaagca aaagtaaaaa ctatagatat tttttacaaa aatgagcttt ataacgagat
    24541 gatagtttcg cacattttgg ctaaaaaaag taaatttgat gccaaaattt tgattttttc
    24601 agcgcattct ttaccacaaa gcattattga taaaggtgat ttatatgaaa agcatgtaaa
    24661 tgatcatgta gaaattttaa aagaaaagct aaaagatcat tttgatgaat ttattttagc
    24721 ttatcagtct aaactaggcc ctgtaaaatg gcttgaacca aatacaagcg atgttttggc
    24781 aaatttaaac gataaagctc tgatttaccc tatttctttt tgcattgatt gttctgaaac
    24841 gatttttgag ctaggtatgg agtataaaca tttagcaaag tgcgattatg atttaatcac
    24901 ttgcccaaat gatagtgatg aatttatcca ctttatttta aagtatttgc ctgattttaa
    24961 ttaagaatga ttttgaagtc cttgtttatg attacaagga ctttttagta aaaatttagc
    25021 caactaagct aaagtataag ctttttctcc gtgcaaactc acatctaagc ctttttgctc
    25081 tacttcttct tttactctta agtctgtaaa acaagagata atcttaaaaa taacaaagct
    25141 tataagagct gacaaaacca cacaaatcac aatagcaaaa atttgctctt ttaaaagttc
    25201 caaacttccg ctgataaaaa atccctcgcc aagtgcattt tgggcaatca cattaggatt
    25261 tactttagca cttgcaaaaa gccctgtggc aattcctccc caaatacctc cgattccatg
    25321 taaagaaaag gcatctaaag aatcatccca tttgagtttg tatttaataa aacttaaacc
    25381 aaaataacaa aacacagaag acaaagtccc tataacaaga gaagcataaa tatctacata
    25441 accgcaagct ggagtaattc ccacaagccc tgctacaagc ccactaagtc cacctaaaat
    25501 agtcggtttt ttatagatga gccactcaag taccacccaa gataaaaagc cgcaagctgc
    25561 tgatataata cttactataa aagcattgat agcaacatca ttcatttcgc cagcacttcc
    25621 agcattaaaa cctaaccatc ctataaaaag caaaatcgca cctaagaaag cataaggaat
    25681 agaatgcgcg tttttatcct catcatcact ttttctagcg cctaccatca aagctcctac
    25741 aagtccagca accccagagc taatatgcac aacaccgccc ccagcaaaat caagacttcc
    25801 tcttttaagc aaaaatccct cactgctcca aatcatatgt gctaacacat cataaactaa
    25861 agtactccaa aaaagtagaa atatcaccaa aacacccagt ttaattcttc ccaccaaaga
    25921 gcctgttatg atggcagatg caataagtgc aaacatcatt tgaaaaatca caaaaagaat
    25981 atttggaacg cctgaagcgt tgtatccgct aataccctct aagaggaaat tctcgaaatt
    26041 tcctacaagc ccaagtcctt catctttacc aaaagaaaga ctaaatccaa gcactaccca
    26101 ttgtaaagta ataacaccaa aaacaataaa gcaattcatt atagtattaa gagtattttt
    26161 acttcttacc atacctgaat aaaacattgc caaagctgga gtcataagca aaactagcaa
    26221 agtacacaac acaataaaac ttgaatttat cgcattcatt tacctgtcct ttcttacaaa
    26281 aatttaattg cgagataatt atatttaaaa tgatttaaaa aaatataaat ttaagaaata
    26341 ttttatatat tttttttata aaaatttatt tttttatctt aaattactat aaataggtat
    26401 tttaaaaaat attttacttc tctataattc aaaattacta gcattaaaat aaaaatttga
    26461 gccaagttaa aaaacaacaa agataaaaag gattattaca agataatgaa gaaaaaattt
    26521 gattatttaa taaaattatc tgatattaaa aaagtaattg tgctttaaaa tgatctaaaa
    26581 gctcttcttt agcttttaaa atatcatcag tatttaactc aagatcaatc ttatctggtt
    26641 ttttataagt tttatcataa tactccaaaa gcataacaat aagcttttgc cattcttttc
    26701 tctcataact ttgaagcaaa tcttggcgta aatttaagct gatataagga ctgatttttt
    26761 gcacacattg ttgaaatttc aaaggagtca ttttttcttg ataaattttt tgtattcttc
    26821 taacgcgatt ttccaaagaa caaaaacaat aaattttaaa agccttttgc attttttcat
    26881 aaaatttcaa aggtaagata atatccccta ttttgcgact ttcgctttct atgaaagcaa
    26941 aattttctaa attttgaata ttgtgaaaaa gttctgcttc aaaagctttt tgcgtaggtt
    27001 gttttcctaa aatatcacca aaagacgagc ctaaatgatt tgccattttt tctaaattta
    27061 tagcttgtgg gagttgttct aaaagctctg tttttccaca acctgtatta ccacaaagag
    27121 caaaaaaatc aaaatttatt tcattttcga aataatgcgt tacaaaagtt ctataagctt
    27181 taaacccacc ttttaaacgc accaccctaa agccaagctc acttaaaatc actgcgatag
    27241 actttgaacg caaaccccca cgagaacaat aaatccccac cttttctcct atgcgaaaat
    27301 tttgagtgat ttctaatata tgcttagcgg tattttgaca aatataactc gcacccatag
    27361 ccttagctaa agcttgattt ttcttataaa ttgttcctat ttcttgatat tcttcatcat
    27421 tgagtgcata aaaatttaaa gctcctatca agtgagaatg caaaaattct ctagggcttc
    27481 ttgcatcgat taaaaaagag aaattttctt tttgaaactc tacaaattca acttcactga
    27541 gcatttttaa aagccaaaac aagtttttga taaacttgct ctatattagt gccacaaacc
    27601 ctagtttctc ctatggttgt gataaaattt gtatctcctg accagcgtgg cactagatga
    27661 taatgacaat gaaaagctat gccagctcct gcatccttgc ttaaattcat accgatattc
    27721 actccatttg catgaatttg ctcttttaaa atttttaccc ccaaacgcac aaaataactc
    27781 atttcttgcc aaatttcatc acttaaattt tctatatgct cttcatgtat ataaggaatc
    27841 accataaaat gccctgcaga ataaggatag cggttcatca ctccaaaaca atgctttgct
    27901 ctaaaaatca cgcctaattc ttcatcgctt ttgatcttat tagcacaatc acaaaatgga
    27961 caaatgcttt tttctttttc aaaatactca ctccgccatg gtgcatacaa atactgcatt
    28021 ttccctcctt aaagcaaagc ttttaaagcc tttccttcat ctttttcgcg cataaaatat
    28081 tcgccgatta aaaaagcatc aacgcctaaa ttttgcaaat gctctaaaaa ttctttattt
    28141 tctaaaccac tttctgcgat gatgattttt gaatttggga tttgtgggat aagtttttcg
    28201 cacaaactca tatccatagt aaaatcctct aaattacgat gattgatacc aatgatatcc
    28261 gctccagcaa aaatagcctt actcaaatcc tctttatcat gaatttcaac caaagcctca
    28321 agacctaaat gtcttgcaaa ctcaagcagt tttttaagct ctttcatgct tagcatttta
    28381 gcgattaata atacaaaatc cgccccataa accaaagctt ctaaaatttg atactcatca
    28441 aagataaaat cttttctaag taaaggaatt tgcgtataac ggcgtataag acttaagtat
    28501 tctaaagaac ctttaaaaaa atgcggctca gttaaaacag aaatcgccgc agctttgttc
    28561 ttctcataat ttaaagcgat actcaaagga tcaaagtctt ctctaatgac tcccttgcta
    28621 gggcttgctt tttttacttc tgctatgatt ttaacttctt tttctactct ttttaaagcc
    28681 ttaatcacat cttttggaaa gaaaggattt gaagctaaag aacgccctaa catatcataa
    28741 ggaagtttta gtttgcgttc ttttaaatct tcttttgttt tttcaaaaat tttatccaat
    28801 atcatggttt tatacacgcc tttatcgctt ttatatgagc tttgctctca tcagaatttg
    28861 caaattcttt atcatctaat gtttgtttta aaatttccca tgcttgctta caatcgccta
    28921 gtttataata cccccaagct aaagaatcta aataatacaa attctgtgga tctttttcta
    28981 aggcaagttt cacaagctct ataccttttt taacatctaa atcataatct ataagcaaat
    29041 atccatagta gtttaaatac aaagcattgc tatctttatc gatagcctgt tcgaattttt
    29101 cttttacaga atcaattact tttggagtga tttttttagc ttcatttgca gcttcaaatt
    29161 caaaaactgc cgctcgtaga agatattctt tattttttgt tttatgataa agagctaaac
    29221 tcattttttt agcatcatca aagcgtttta aattctgata caaagcgagt ttaatgtcat
    29281 catctaaatc atactgcaaa gaaattttta aagcttcttc tgttttgcct tgagaattta
    29341 aaagctcaac taaagccaat acaaaacttt tatttttggt aagttgataa agctctttat
    29401 atatactttt taaagcttcg atattttttt catcaaaata aattttagca agcaagacgc
    29461 aagttttgag agtgcaacca ttggtttttc ttgaaaattc taaaacattt ttaatattta
    29521 aagtatcatt caaaatcgca taaattccta tgagtttaaa taaaatttct tcattttgca
    29581 cttgattata agcagatcta tagtattttg tagcattttt taaatcattt tttttaacca
    29641 aaatatcccc gtaaagctct aaatttctag gatcactatc cttttttgtt aaaagctctt
    29701 tcataagttt ttgagcattg ttgatatcat ttgaatttaa agcataaaga gcactaagtc
    29761 gcttaagatt gtcattttga tttaaataag gctttgctag attatttaac tctgcttgct
    29821 tgtcaagatt gtttgctaaa gtaagtaaaa atgcattttc taaaaaatta gtattattat
    29881 aatcttgata aagacttaaa aattcatctc tggcttcttt gtattgttta taatactcat
    29941 aattataagc cttcataacc cttaaatcaa aatcattgct tttatatttt gtataatcag
    30001 gataaacaac attgattttt gaacttccac aagctgccaa aaaaaaggct gctaagacaa
    30061 ataacaaata cctatacatt ctttttctaa ttccttttga tgtgttttaa aatattccca
    30121 aaatggaaaa gttctgcatt gttttggacg aaaatcgtag atactgcaat ttcttttttg
    30181 agtatcaaaa aaaatgcaag caaaaccatc ttcaaattcg acttccttaa aactcatttt
    30241 aaagcccact tttctcaagt atttttcagc aaattctttg ctttctaaat ttaaatgctt
    30301 tcttaatgct tctaattctt ccttgctcgc aaaaatattg ccactttctc cagtgcaaca
    30361 ctttccaccg catttctcac aagcattttc atcaaaagca taagaaaaat ttttatcaaa
    30421 tatcataact ttttaaccta aatcttaagt gaatttcttg catttgtttg cttaaaattt
    30481 cattttcata tacaaaaaaa ggaggtaaaa tctcacaagg cgattttgaa ccttttttta
    30541 cctgtatcaa aacaagtctt gcttttttgt tttgatgtgt atgtacaaag caaagctttg
    30601 ttatttttat tttcatatct tttaaaataa aacaaatttc atccaaagct aaagcttcat
    30661 agcaaaaata caaagtacca tttggcttaa gcatagaatt tgctttagtt aaaaagctat
    30721 gcaagggtaa aaattcctga aatttactta tagctttatg ctgatcttca ctcttgtaag
    30781 ctccttgtct ataaaatgga ggattgcaaa ctatgaagtc aaattttttt atgctttgaa
    30841 attgattgaa atcatcatga aaaatatcgc cttgtatttg gttggatttt aaattttttt
    30901 caatcaattc tatattttct ttttgaatat caatcaaaga taaacttaaa tttgcaatat
    30961 tttttttaag taaaatacct atgataccac agcccgcacc tacatcaaaa acagcgcctt
    31021 taattccttg ttttaaaata aaattagcta aaattaaaga atcactattg taacgatacc
    31081 cttgtgataa ttgtgctagc gtaatcaaat ctgacatata ttttaatgcg ttggaatttt
    31141 aatgcgtttt ggaggttgtt ctttaaatat attttgttct tttgttatat tattatcttc
    31201 tttaaaattt actgggcttt gtgctgtcaa aaaagaaatt acaaaagtta taaaaaaagc
    31261 aatttttatc ataataacac ctcataaaat ggtgtccacg gcgagattcg aactcacggc
    31321 ctcaaaatta ggaattttgc gctctatcct gctgagctac gaggacagaa agcgggaaaa
    31381 atcccgctaa aaatttaacc gtttcttttt ttgatgattt catccgcaac atttttagga
    31441 acttcatcat agtgatcaaa ttccatagaa taagtcgcac gaccttgagt ttgacttcta
    31501 agatcagtag aataaccaaa catttcagcc aaaggacaaa atgctgtgat gattttattt
    31561 ccaccacgct catccatgct atttacttga ccacggcgtt tgttaagatc tccaataaca
    31621 tcacccatgt aatcttcagg agtttctact tcaactttca tcataggctc taagatcaca
    31681 gcacctgctt ttctagcacc ttctttaaag cccatagaag cagcaagttt aaacgccatc
    31741 tcagatgaat ccacctcgtg ataacttcca tcataaacag ttactttaac atcttccaca
    31801 ggataacctg ctaaaacacc attttgtaat gcttcttgaa cacctttatc aactgcagga
    31861 atgtattctt ttggaattac tccacctttg atatcattaa caaattcata tccactacct
    31921 ggctcaagtg gttcaaggcg taagaataca tgtccatact gaccacgacc acctgattgt
    31981 ttagcgtatt tgtattcttg ttcaacagtt tttctaatag tttcgcgata agcaacttgt
    32041 ggttgaccta cttcagcttc aactttaaat tcacgaagca ttctatcaac gataatttca
    32101 aggtgtaact cacccatacc tgaaatgata gtttggccac tttcttcatc tgtagaaact
    32161 ctaaaacttg gatcttcttg tgctaattta tttaaagcaa tagacatttt ttcttgatct
    32221 gctttagttt ttggctcaac tgcaacagaa ataactggat ctggaaaatc cattctttca
    32281 aggattactt tatctttttc acttacaaga gtatcccctg ttaaagtatc tttaagtcct
    32341 acaacagcac caatttcgcc tgcgtaaagc actttaatct cttctctttt gttagagtgc
    32401 atttttaaca aacgaccaat tctttctttt ttatctttag ttgagttata agcataagaa
    32461 ccactttcta aacaaccgcg ataaacacgc acgaaagtaa gttgtcctac aaatggatct
    32521 gtcataattt taaatgcaag tcctgcaaac tcgccatcat cagttgattt tacagaaact
    32581 tctgtgccat cttcatattc acccttgata tttgccactt catcaggagc tggtaaataa
    32641 gccacaacag catcaagtaa aggttgaacc cctttatttt taaacgctgt accgcaaagc
    32701 ataggaacga tagaaagact taaacatcct gctttaatcc ctgttttaat ctcttcaagg
    32761 cttaattctt ctccgcctaa atatttttcc atcaactcat ctgaagtttc agaaactgct
    32821 tctatcattt ttgtgcgata ttcttctgcc ttttctttaa gttcagctgg aatttctttt
    32881 tctacataat ccgttggctt agtatcatct tcccaaacta aagctttcat agttacaaga
    32941 tcgattacgc ctttaaaatt atcctcagca ccgattggaa tttgaagtgg aactggatta
    33001 gcttttaaac ggttgcgaat ttgatcttct acattgtaga aatttgcacc gattctatcc
    33061 attttgttta caaatactat tcttggaaca ccatatttat ttgcttgtct ccaaactgtt
    33121 tcactttgag gctgcacccc acccactgaa caaaataccg caacagcacc atcaagaaca
    33181 cgcatagatc tttcaacttc aattgtaaaa tccacgtggc ctggagtgtc aataagattg
    33241 atttgatgat ctttccaaaa acaagttgta gccgcagaag tgatagtaat cccgcgctct
    33301 ttctcttgtt ccatccagtc catagttgca gcaccatcat gaacttcacc gattttatga
    33361 ctcatgcctg taaagaaaag aattctttca gatgtagtcg ttttacccgc atcaatgtga
    33421 gcagcaatac cgatatttct aacttttttt aaaggagtac ttcttgacat acacactcct
    33481 tcttaccaac gatagtgagc aaatgcttta tttgcttcag ccattttata agtatcttct
    33541 ttcttcttaa atgaagcacc tttgctattt gctgcatcta aaagctcagc tgcaagttta
    33601 tcaatcatag ttctttcgct tctttttctt gcaaaagaaa taatccaacg aatcgccaaa
    33661 gcttgttgtc tagcaggacg aacttcaact ggaacttgat aagttgcacc acctacacga
    33721 cgagatttta cttctaataa aggcttaata ttttcaatcg catcattaaa aatatcaata
    33781 ccttttttct cgccaccttt tttatcaata gcttccaaag caccatacat aattgttgta
    33841 gctgtgcttt ttttaccatc atacattaaa gaattaataa attttgtgat tactttatta
    33901 ccataaatcg gatcaggcaa gacttctctt accggagctt ttcttcttct cattattttt
    33961 ccttcaaatt ttaaatttta ctcaaacaaa atcaaatcta acggatttgt ctgtatgaat
    34021 gattattttg cagcgcctgc tttaggacgt ttagcaccat atttagaacg agaaactgtt
    34081 ctttttgcaa cacctgctgt atcaagagca ccacgaacga tgtgatattt aacccctggt
    34141 aagtctttta ccctaccacc acgcactaaa acaatgctgt gttcttgcaa gttatgacct
    34201 tcaccgccga tatagctgat cacttcaaag ccactagtaa gtcttacttt ggcaactttt
    34261 cttaacgctg agtttggttt tttaggtgtt gtagtataaa ccctagtgca aactcccctt
    34321 ctttgtggac aatttttaag cgctggagat ttagattttt ctaaaacttt tttgcgctct
    34381 tttctaacca attgatttat ggtaggcaca ataattcctt tctttaaaaa tgtaataaac
    34441 tttggatgat atctaaaatt tacttataaa aatataaact agaaataatt taaatgcttt
    34501 taaaaatttt tataaaataa acctacataa tttacattaa tatttataaa a
//
LOCUS       DARGEY010000006        33384 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.006, whole genome shotgun sequence.
ACCESSION   DARGEY010000006 DARGEY010000000
VERSION     DARGEY010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 33384)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33384)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33384
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.006"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            282..500
                     /locus_tag="SF008_000289"
     CDS             282..500
                     /locus_tag="SF008_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HEG8232600.1"
                     /translation="MLLNIIIEKDQDGYFARILELEGCVSQGNTYEETLANIKEAGEL
                     YLESLANEEKRIIENKTTSIIPMVLANA"
     gene            493..696
                     /locus_tag="SF008_000290"
     CDS             493..696
                     /locus_tag="SF008_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HEG8232601.1"
                     /translation="MPELPRMTAKEAEKLLLQNNFLIDRQKGSHRIYKKGLYRMVIPH
                     HIGEILHPKIIKQLFEIIEVAKD"
     gene            700..2493
                     /locus_tag="SF008_000291"
     CDS             700..2493
                     /locus_tag="SF008_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002835057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8232602.1"
                     /translation="MPKRNTIDTITLGLFSDEDVSIICEDTIKLERGSVAVLSGNSEV
                     GKSFLALKVCANAINDGLKPFFWSVEDKNKAILGRIKNIESFYSFNTAELEFSNELPK
                     INKEPINCLKEELNELADCDLIVLDTFSAFFSTLGFKDQNNQNDVQNFFNILTDIAKS
                     NNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFEKGEDKNSTTYRLLEVLKDNNN
                     INAGEFQKTIKVLQNSSIDEPSIVNLRANSIDSNTLEIINKKDISAVSVNELAKGYVT
                     MNENRGVFYLSSRKLTDTNFYKVFKENDNKIDFKMTGANDSSYVISLKNSLLTQTHRN
                     ILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKNSNNYSWLKQKFTE
                     ISRFAYDLAFTQNVEDKDKKTITQRDKGILMFDSVERITKENGTIVSVFVLTVRREYI
                     KKLETESTLSYDDDLSKILINLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYRFYK
                     ESSIISKQKKEIVKLKDKLIEFGINVYGKGVEFANYDDEFFHNKYKNENDLFFIYESN
                     NRVKRYIKRSDPMNQLNTKSNKFLLQKSLFD"
     gene            complement(2616..3230)
                     /locus_tag="SF008_000292"
     CDS             complement(2616..3230)
                     /locus_tag="SF008_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEG8232603.1"
                     /translation="MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIHLDEILEVKISST
                     KSQEKRKIKDLKQKLKAGDLLIATELSRLGRSMLEIINLVLEFNSNNIKFLFLRQMEL
                     SNFNNPASKLILSVYAYLAENERDLISQRTKAGLENARASGKKLGRPKGSLNSIYDKD
                     IDKIQTLLDKDLSIKSIWKLLYKDNGKSYDGLLWFIKKRKLKGS"
     gene            complement(3227..3604)
                     /locus_tag="SF008_000293"
     CDS             complement(3227..3604)
                     /locus_tag="SF008_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vapd"
                     /protein_id="HEG8232604.1"
                     /translation="MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQ
                     YSGYTSKEPINERRVIRIVNKLTKKFTWLGECVKEFDITEIGEQYSLKETIQDLCAKD
                     FHQKLKEFTEKTPKNQKLKDLER"
     gene            complement(3595..3918)
                     /locus_tag="SF008_000294"
     CDS             complement(3595..3918)
                     /locus_tag="SF008_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232605.1"
                     /translation="MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKI
                     NKETYHCKGDKYDLGCMTLFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEG
                     EGIWE"
     gene            4089..4352
                     /locus_tag="SF008_000295"
     CDS             4089..4352
                     /locus_tag="SF008_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002828964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HEG8232606.1"
                     /translation="MKKRLLSLILISPIFAFGAGGIDKVNTFMQNLSIALYALGGVLL
                     TIALMWGASKIMYQGQTLREVAPVFIGGVIFGSASAIAGYIIT"
     gene            4365..7133
                     /locus_tag="SF008_000296"
     CDS             4365..7133
                     /locus_tag="SF008_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirB4 family type IV secretion/conjugal transfer
                     ATPase"
                     /protein_id="HEG8232607.1"
                     /translation="MEKNPLFKGLTRPPMIFGVPMTPFVIAMGCIILIAFYSQNIFLV
                     GFSIPVFFIMKAMTKRDDFIFRLMFLKMRFFSNPASKNYHKVKTYSTNSYRQMPPNSN
                     FPKISVFGLNAEPSFEKLIPFSSLINDSVVITKDYFLMTTWEIGGISFEAEEDDELDI
                     KNDLLNMLFKSFANESVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLR
                     KNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPK
                     RLKTYSKDDKTYSKQLEFYNYLLGGKFNPIRVLPSPIEQYLNGNLQNIQFGHDTIQFN
                     QNDSTKKFARCIEIKDYTNETFAGILDILMYLDVEYTVTQSFSPIPRVDAKSAISKQK
                     KQLIATEDDGFSQVEQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTK
                     MNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINYSSLIALHNFSMGKRDKN
                     CWGDAVSILKTPNKQPYYFNFHQSSGANKNDFGKFFLANTLILGQSSGGKTVFMNFIV
                     DQMMKYASKDTFPDDIPEDKRKFTAIYLDKDKGALGNILCAGGRYISIENGKPTGFNP
                     FMVESTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISL
                     LLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDD
                     KDVSGILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFL
                     RLATQSLEDFLKLKNAATLIEQSSTMVFLSNPKAKEEEYVKGVGLSYDEYMIIKGFNP
                     VKRQFLIKRQDEKVICTLDLSPLGNENLKILSTETAYIDVIEKIFSQENKSLDEKVLE
                     LKEIYKNS"
     gene            7144..7710
                     /locus_tag="SF008_000297"
     CDS             7144..7710
                     /locus_tag="SF008_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HEG8232608.1"
                     /translation="MSNKVIINKQEVQFDTQNNQIFCTSLDVAKVFGKRHFHVLRDIE
                     NILNDLREIGTSQDLSNFGETYRNTEIRGFGKVKGKTRKDRCYNLTRDGFSLLAMGFT
                     GKKALQFKIAFINAFNEMEKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVIITDN
                     PYSKEAKNVFSLNYLVDNRTPKDPKKLQ"
     gene            7707..8372
                     /locus_tag="SF008_000298"
     CDS             7707..8372
                     /locus_tag="SF008_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232609.1"
                     /translation="MSDKELQKEILALENDVKQLEATIDVIKQRITHLKDIAWDRQSK
                     KESSQMYKVLKEDKTHTRVKSNVGDIKVDKDFMDKEIKKHLDNPNLRGMVTTQEMLSF
                     PKVAKGVEANNEARGYTWQVKANDGNTLVYGSRKYETNNEKIHRLATSHSKTEKNERQ
                     AEVGGRSHPHHPIFNDFNFRKSAENIISQQNKSTNDFKAKLEEFSTKKTNAIESINKE
                     FKR"
     gene            8406..8831
                     /locus_tag="SF008_000299"
     CDS             8406..8831
                     /locus_tag="SF008_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEG8232610.1"
                     /translation="MNNVNLIGYLGKDFEVGTTNSGRVYAKNSLAITKRWKNERGNEE
                     SSTTWIPIVLFGKSAESASTHIKKGSQFACSGELSSNQYQDEDGNTRTMLTVIVSKFY
                     WLGKKDKDDNGTQNPQVPPKEPNIDYENTNIESEETQVF"
     gene            8853..9122
                     /locus_tag="SF008_000300"
     CDS             8853..9122
                     /locus_tag="SF008_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006803305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232611.1"
                     /translation="MKNLSVEELAQELETSNHEKLIKALFLFEKNSSMEDLNSDQIEI
                     ILDEVYEFYINHKSISSFLQEDINQALDKAIDKELCKKQEKSFER"
     gene            9126..10097
                     /locus_tag="SF008_000301"
     CDS             9126..10097
                     /locus_tag="SF008_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HEG8232612.1"
                     /translation="MKKNIFGVNKAIGKSHPHENGARLISLDYNYTKEYNYNYEICVT
                     QFNHLFSEVKFSHRVAALWLTPQNYIQKFKKSILILTSLLVLPNLAFSAGIPVVDVTA
                     NQQMATQNAKQVAEWAKDASRWTETVAHYQKQIQAYKDELLSKTGIRDSVTFLKDIKQ
                     IYSDFAEVGQNIQSFYNDVLRDPQKFLSDKGNEIFGKYTSFDRCNFDFLSQSEKNICK
                     MNLITYAAQVETYNQASKQMDTISQTLQKLQDKLVNSKDIKESTDVGNAIQLEVAKIQ
                     MVKNQVDLANASYENQRKIKEDMAMQEYSKSLQKPRESAMEFFKNNK"
     gene            10094..11092
                     /locus_tag="SF008_000302"
     CDS             10094..11092
                     /locus_tag="SF008_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HEG8232613.1"
                     /translation="MNLDLFQTLGKSIQQIVDAIRQVGTNDKVAELSVLLSIIITLVI
                     MYKGYEVLMGRSQSPIRELTWDIVGKLVAITFALNLGGWLDLTISTMDGLYEWAGGGT
                     QMYKTLDEMYANTAQLTNIIWAKSSGVGGAILAIVAMLLCYVGFAIAVVPALTIFVVT
                     TFTQTLLVITAPIVFWLLVFKATKNVFTQWIGLLLSNTLVILLVGLFLGVFMEQISTW
                     IKYFAKVTQAGDEVLGTSIFFVIAALVLVIMIISAKLYAEKVANVSMEGAMGGVIGSV
                     LNPVGRLAGWAGGKVAGKTVNTAKAGGKLAAKGTLASAKGGYSFAKKMYERARNAG"
     gene            11082..11249
                     /locus_tag="SF008_000303"
     CDS             11082..11249
                     /locus_tag="SF008_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232614.1"
                     /translation="MQAKLIFILLLGVLFFSACSTKNQGKYDEFFNNQTGWIPVNTQN
                     KDLNKGTMDEK"
     gene            11239..11901
                     /locus_tag="SF008_000304"
     CDS             11239..11901
                     /locus_tag="SF008_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HEG8232615.1"
                     /translation="MKNEFNTAIDYEASFRYLIEKSNKRAWLIAFISIFIAIISIIAV
                     VLLTPLKTIEPYVIRVDNTTGMVDILTMLDEKEIKANEALDKYFISTYVKAREGYYYD
                     LLNQDYLLTQLMSSEKVANEYRALYEGDNARDQILKNSNEVSVQILSIVLGESNGVKT
                     ATVRAIITTKNLTSKGTTQATKVITLSYDYILAKASEENRFLNPLGFKVLTYRIDDEV
                     AQ"
     gene            11898..12785
                     /gene="virB9"
                     /locus_tag="SF008_000305"
     CDS             11898..12785
                     /gene="virB9"
                     /locus_tag="SF008_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein VirB9"
                     /protein_id="HEG8232616.1"
                     /translation="MKKIILINLLLCSFIWALNIPKTSTFDKRIAYAIYNANDVFQIN
                     AKNGYVSVLEFGTDERIINTATGFAEGWDLIEKDNLLFIKPKAYKTQLVQQENNNIGE
                     SQASQEFVLDPNPHDWKTNLIVITNLNTYVFDLKLVNQNNNATYKLSFSYPKKDLKAA
                     KEFLEAQEQENIRRDLNKNTIPRNWDFYMKINKGSEDISPNFAYDDGVFTYLGFDNTK
                     TFPAVFMYDNGKESILNTHIKKDGNYEVLVIQKITKQILLRSGDKVVGIFNRGYAKNP
                     LDKTRETSNENIQREINKK"
     gene            12812..13987
                     /gene="virB10"
                     /locus_tag="SF008_000306"
     CDS             12812..13987
                     /gene="virB10"
                     /locus_tag="SF008_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein VirB10"
                     /protein_id="HEG8232617.1"
                     /translation="MQDKEQDNLDNDFENHTSDLHDQKNHLRKIQAYVIFAVGGLLLV
                     LILVYFLKSFLSSNTTTEEVQKEDNKDLAQSVKTKEFIPPPPQKTFDELIAQESPKPT
                     QDLILEPKPPKPRIVKGAGVTVVASSNNDGFGNNGTGNREEFGEKPNTVFEFGQNGSL
                     QNSNNLQGGSNGDFVGEVFTPTIAKVSEFDQNLLLPKGTYIGCALKTRLVSSIKGGIA
                     CIVSNDVYSANGNTLLIEKGSTITGTFNTGQMDDGMDRLFVIWQEIRTPNNIIIPVYS
                     GATDELGASGVQGWVDHHYLKRFGSAVLLSMIDDSLAILADQIAGKDNKNNYANYTEN
                     TRDSAKEIANTALEKMIDIKPTLYKNQGDLVGVYVNRDIDFSKVYKLTRKKNVNNAR"
     gene            13968..14960
                     /gene="virB11"
                     /locus_tag="SF008_000307"
     CDS             13968..14960
                     /gene="virB11"
                     /locus_tag="SF008_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type DNA transfer ATPase VirB11"
                     /protein_id="HEG8232618.1"
                     /translation="MSITLDKYTQKFFGEFLKDDNINEICYNGDNKIWVQNSKGLWEC
                     IDTKLDFEQAGHFATASASFKKDKIDVSRPILSCILVGGERMQIVIPPATKSEHISIT
                     IRKPSKTRFKMEDHIKSGLFEDLNPDDKNKIKPSDEELIKLYEARDYQNFISKAVSYG
                     KNIIIAGETGSGKTTFMKTLIDFISLDDRIITIEDVEEIKFYEHKNFVQLFYPSEAKS
                     TDFLNSATLLKSCLRMKPDRILLAELRGAETYDFINVLASGHGGSITSCHAGSPEETF
                     TRLALMTLQNPQGQCVPFEIIQKTLKDLIDIVVHIHAHHGKRRISGIYFKEMER"
     gene            14961..16772
                     /locus_tag="SF008_000308"
     CDS             14961..16772
                     /locus_tag="SF008_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HEG8232619.1"
                     /translation="MQNNKSIQMIFLAIASFILTYLITPIVFFFLNKVKIMKAIEIYN
                     INFTLQAISNGYPKIWLSLGITFGICFVVFSVLVLSLKAKKSQFGEARFANFNEIKKM
                     NLFSDNGIIIGKYKGKILRFSGQQFVALGAPTRSGKGVGIVIPNLLEWRESAVVQDIK
                     QECFDYTSKYRKEILGQEVYLFNPFSRQTHRYNPLTYIDMSDKEHCDSQLMDLGNILY
                     PQDGDSTSKFFNGLAQNLFIGLCYLWRDLQLTDYGKEFQSAFDINVGEFNFYNILQLS
                     KGFSLKNEGKTLKGFDDTYNFLSYCEVLDEATIRRLETYFNINSDATKSGVMSSFNAP
                     LVPFESETLRLSTETSDFDLRDLRKKKMTIYIGITPDQLANAQFILNIFWSQLILLNT
                     KELPQSNKDLKYTCLMVMDEFTAPGRIPIYQSAISFMAGYWLRSLMIYQSNSQLETQP
                     PLGYGKEGAKTLLTNHACQIFYAPREQEDAEAISRILGNTTFKTKSRSINTGNNGGGS
                     HSISEASRALMLPQELREMPFENELITIDSGKPILCNKAFYYSDSYFMDKFKAVSKSL
                     STIRKIPSRKQLEDAILKGECKVKIQIIGENNDKKIA"
     gene            16753..17190
                     /locus_tag="SF008_000309"
     CDS             16753..17190
                     /locus_tag="SF008_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cag pathogenicity island protein"
                     /protein_id="HEG8232620.1"
                     /translation="MIKKSLDNLVIMALVFIMVGCSTAPKPKELDDNSALSINNSILE
                     KKYSFVPKDPYLSGFNWTYHIVVEKKTIDDDFIKNDLITKTFLLAHNSTKIILVGRKD
                     LIEQYKQYFEKNQVLAPIELQPVNPIERDFNKVNILFFNKTNF"
     gene            17202..17966
                     /locus_tag="SF008_000310"
     CDS             17202..17966
                     /locus_tag="SF008_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232621.1"
                     /translation="MKKILFPFCVFGVINSVNALDLQLLSGDTRTSCEVILCLASPVK
                     PPECASSLAKYFSIHFKKPWKTIQARKEFLNLCPIDTTNDPEMYKYKNDILVNLDGEC
                     STTALNQRIEKSKQPLKVEKICTGGGHNGSRECVEIKTYGFRINPELTNSCKLLASSK
                     YTDYHLKYTCDKKFYEQKDWERGYELKEVSQEIYNALPVSQREQGEKLTPISYGEFIK
                     LPANKRKQEGFGKYYRIDIAYYQKIIIKKDCWINEK"
     gene            17969..18766
                     /locus_tag="SF008_000311"
     CDS             17969..18766
                     /locus_tag="SF008_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232622.1"
                     /translation="MNEEINSNENNLFEIVNEDNSKNIAMQNYNELLEKFENLIKIII
                     AKINVGKQNAQNNTEDGIFKDLESNIIELDNTYLALISYFKNPPNDEEKEIINKTISI
                     KKTMEDFAKFANEIQKISLDDKLKQYNEQINKFCEIVEYKLSHNAKNYNTFLDHFVED
                     GKQKLNTFSEIFTKMTKNTKWYLIFFSFTSIGLGIALGILILLTYIKYSEYNNLKERV
                     STITQGLATISIDENSKGSFTLSFAKNKKTIFNENKNSIQITLQGGE"
     gene            18837..19457
                     /locus_tag="SF008_000312"
     CDS             18837..19457
                     /locus_tag="SF008_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232623.1"
                     /translation="MAFGKLVNDKIVIDTNNALNYKNKEGDIQQRKVDTALIDVIKEA
                     GQVAAMEHGAVLFSAKINDEWKNYFVNRDEKTHNIVLKPTNSQNRDDFIYINSNINEQ
                     GYFYYTINQKREAAKELIEGIGIIEHQNQDGTKSHYLETNVRLYNEELKQELKEKGNE
                     FIAVISNAGIRIVNEAEMKAQKQEQQIQQTQEIKEPEKTQNQEFGR"
     gene            19721..21916
                     /locus_tag="SF008_000313"
     CDS             19721..21916
                     /locus_tag="SF008_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase 3"
                     /protein_id="HEG8232624.1"
                     /translation="MRLFIAEKPELGRAIAEGLDGNYKSGEGYIQKGDNIVTWAFGHI
                     LELAKPEEYDEKYKLWKLEDLPLPIKEFKYLPKKESKKQLKIICDLIHSDKITSIVNC
                     GDADDEGQILVDEIIQYSKTSKPVFRVLINDLTPKAVKEEIAKIKPNADFKGMSERGF
                     ARSQADWIVGINLTRAYTIMARKNGYEGVLSVGRVQTPILSLIVNRDKEFENFKSIDY
                     YSLLGDFNINNNTIKARLKTEDKILDENLAKEIKESCENQNAKINLKIENKKEYPPLP
                     YNLLVLQAECAKLFGFSPDKTLEITQNLREKHKAITYNRSDCQYLPETMFEQAPNILN
                     IIKENLNSNDEIQALIASSDLTIKSKAFNDANISAHYGIIPTQNKISSQLTQDELVVY
                     NLIAKRFIIQFFHPREYQTNTINLEVNQRIFTATQNKTTKSGFRSLWQNVDSEEEQEN
                     NENDINDLSILKNGDIAKCSLIQIEKKQTKPRPYYTMTTLLKDLNSVAKYVSDERIKK
                     LLMEKDKDKKGESGGIGTPATRSNHIKTLIEREYIEVSKDKKQIIKSTKKGRDLIKLS
                     PKSLITPDMTALWFEQQKMIEISELRREQFLEEITKEVISEIQRIDKNQEFKILDNEN
                     KPKIQCPQCNKGFLTKRKGKYGNFWGCSEYMEGCKAIYPDNKGTPNFETKQASNDTTH
                     KCPQCNKGFLQRIKSKNGNSWWWGCSEFKQGCKAMYYDNNNGKPKIINV"
     gene            22314..22787
                     /locus_tag="SF008_000314"
     CDS             22314..22787
                     /locus_tag="SF008_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232625.1"
                     /translation="MLDYEKFQTMSKEEYFKKYNVGIRFLFGCDINQKDEIEMISLRV
                     FLPKKYFQEYKNIDIFKTMDLFKKTPLFKELIEQSIKIDFEKREFVMPDFFIKHDIEI
                     IPYFTQGGEKEEELSKEKFFELLKQNKIKELNYLCFLFFGLFCEEEYEYFCKVKE"
     gene            22791..23114
                     /locus_tag="SF008_000315"
     CDS             22791..23114
                     /locus_tag="SF008_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232626.1"
                     /translation="MISVTLLFFLFGLNKLLFNAKNTIYKLLSYIKIHAIFINLRTLL
                     FLILVFNADLSYMGTVLFLVDLMTAISIFFAYAQLAYGFSIKDCMFYLVCGKIDKEWL
                     KEIQK"
     gene            23111..23506
                     /locus_tag="SF008_000316"
     CDS             23111..23506
                     /locus_tag="SF008_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232627.1"
                     /translation="MTEEKLIKKEIFSYTIFIAIIALICIFKNEIWEFVKFIFSNLDF
                     ICGNFANFVSEDNIIFFPVTTLLIVFTIAICAVWGLSNVLSLSLFIMPIFVAVFYIFN
                     IDISLKNLYSSYFIFLIIINGLLWSANQR"
     gene            23503..23748
                     /locus_tag="SF008_000317"
     CDS             23503..23748
                     /locus_tag="SF008_000317"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232628.1"
                     /translation="MKKITIVAYAICFLSGLWFLFSAIKEHFGILSFILGIALIYFGV
                     INIKRILNDSNENKNSKRIKRKTEREREELILKKIGE"
     gene            23753..24019
                     /locus_tag="SF008_000318"
     CDS             23753..24019
                     /locus_tag="SF008_000318"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232629.1"
                     /translation="MLEIDNNKEFKILRLNKQEILKIGGYGICDSCNKALSNDGFMIC
                     VLFSCYCEKCYQKWYKVAINHKEDREIEKDVYENIKSKITNIYF"
     gene            24077..24637
                     /locus_tag="SF008_000319"
     CDS             24077..24637
                     /locus_tag="SF008_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232630.1"
                     /translation="MIISVVNKKGGVGKTPFAFSIAKDLEYFLQSNDNSIIEKIYPEK
                     AKILPTPKKIDNCVYDFGGFVEKGVLDIIKESNKIIIPCTSNYNSLLRTLETLNEIGN
                     DDRVCILVTDYRDEKEKRQICETLESNFTDLNLFFFKFSKIIENSMSSGASFTELYNE
                     NNLSRLSYTNFFNEYQRLLDFIRKDK"
     gene            24640..24906
                     /locus_tag="SF008_000320"
     CDS             24640..24906
                     /locus_tag="SF008_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232631.1"
                     /translation="MEKKPFTIAEALNSETSSQKTFKKADKKSAGRKTIDQKLRRDNL
                     VVCRLNEQEMEILKKLMDLDLVSEYGTYIRKLILKEARALNINS"
     gene            24953..30748
                     /locus_tag="SF008_000321"
     CDS             24953..30748
                     /locus_tag="SF008_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002817902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEG8232632.1"
                     /translation="MSKKTKRQIEDEKDYGGRSLFDLIELEFSQGEENEQQNRELSEH
                     REVTDNIERTSISSNTPSVDRQENSAIQFDNTREMGRVLSEHNQESRNVRSHDTSITT
                     SSNGISNFGEQRSKQEERSGANRYGDTSGRTDKSQSIHSNRTPNLFSFISRNDDERQG
                     TDTRRNNQQSVLETATRNDGYERRSLKSGQKLDFVSDDEIYLGSLKDRFQKNLQAIKL
                     SKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKEFKELISTLDYAEYEKA
                     KTSTLDAFYTPKIIIDTIYQGLNQLGFNNDGHTKEIFEPSAGIGSFLSYAKNYSDKYH
                     FTCVELDTISANILKHLHPNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDTT
                     LNKTSVHNYFIGNAIKNLKEDGIAAFVVSSYFLDSKNSTIRNYIAEQATFLGAVRLPN
                     NAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYDDRFDEAEKRGMHPDVFNDFR
                     INEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKTLPKNIYKYQETK
                     IKLSYYRIDRESPEYEKYSKTLSKLKDGNYFEYNNEIYMKIRSDDELVFSKPVLNEHD
                     TRRIKKLIALRDQFNTLIEYEKNESSDLLVENQRKYLNKLYDEFVAKEGYLNRDANKK
                     AFREDVEANKILALEKNYSSGISKSVALKEGIDPIAPSATKADIFFKRTINAQKEIKI
                     STPKEALIASINEYGRIDLKFLETNLNQPLEETLKSLEQDRLIFKDHKNPANYVLAEK
                     YLSGNVKAKHKEVKKLVEDGFNEFVNNLESLEQVLPKDLKAVDISISLGTTWIPIKYY
                     KQFIEETLQITPKDYDLFLMEKTGEWSLKGFGHSLSPYIRSQYATEKIGCFDLFEHGL
                     LRKPIRIYDKKLDPSGKEIRELNPKETAIANSKLENLKNEFIEWIYKDYDRRTDLENI
                     YNERFNTNIEPQYNGEHLELPNFNANIKLKKHQKNAIYRAIQENSIIFDHQVGAGKTL
                     VAICSVMEQKRMGLLNKPLIVVPNHLARQWNDEFYHAYTNANILVATNDDLKKDNREK
                     FFSKIATNNFDAIIMTHSQFKLIPAPYEVIKKQYEEDINILEQTLEKKQNDDNVMRYS
                     VKDLEKRIENFKVKLSDLQTTHKKSKAIDFSELGIDALIIDEAHEFKNLLITTSMGDI
                     SGLGNLKGSQKAYDLYSKTQYIHEQNKKLYFLTGTPISNSITELYTLQRYIQPNILKE
                     KGIQAFDSWASTFGEVTNAWELDSSGINYKIVARFNKFKNVPELSTMYKSVADIVTNN
                     DIMKYQKDFVPKLYNDKPINIVAPRSEEIAEFIGIQDENGRWNEGSIVWRMEHQQDDI
                     TRNNLLACTTDARKAGLDFRLINPHCDDYANSKINKLIENVFNEYNAWNDDKGTQLIF
                     CDLSTPKQHSQKVALNGNIATPNLNKEEFVNINETIEQTEEENSKSLDELLAEQAKFD
                     VYTDILKKLVAKGIPQNEIRFIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTN
                     VQKRIVALHHLDCPWRPSDLEQRSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDAR
                     MWQVIESKARSIEQFRKAGADVRTLEDVTSGAADAAEMKAEATGNPLILLQVQLNSDL
                     RQEEMLYSGYKRQIHNNEESLITNLSKIELLKKDIAKMEILNSIIKENNSEHFQGKYY
                     INDDEKDFIVFKNDTSDLNKSRQAELERNFEKIVKTIADDYQKEYKVLEFKGLLISGE
                     RTDLNTLNFYVSTTDGKTIIEPENLIYKRDEKTFFKLESYVNFGGFVKRLNNFYNDLE
                     KFTQLNKNKIENLEKEIVELKSITGDNTPKYKRKDYLEALREDNRIIMDEIEKMSKQK
                     NYKSDFVPKSPKILEDLNKQSKTIKENEIGY"
     gene            complement(30840..31784)
                     /locus_tag="SF008_000322"
     CDS             complement(30840..31784)
                     /locus_tag="SF008_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002808954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEG8232633.1"
                     /translation="MFKEVCNTLRMSRTELAEKLGLSKTTIDSWSDSSRISKTAKVAL
                     ELMLENYKLRSTIKNFQDGFASLNSYNLGENMMNNVFSKDHNDLINRINHIFNELKLS
                     EITCSRAMGESNYAKINQILNFKMYPDFDFLEKFALRFKINHNWLLTGEGSPFASDLI
                     KSNFNSQFIKEAEEFDRIYIVTSKNNLDHTRIIVINRNNEFGLYQTYFCIGSNFIMEA
                     RECSDLCDLYEFYQKFKYKISCLEFNEDDYRKLLSLKYYPKNILDRGQTSYMLFDLFD
                     LREDDKERYGEFFEKCINIIKSTLKDRENRRIERNGIN"
     gene            complement(31914..33302)
                     /locus_tag="SF008_000323"
     CDS             complement(31914..33302)
                     /locus_tag="SF008_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HEG8232634.1"
                     /translation="MSRSIRIFDDEIIAKKVFTKIENASKLPLNYINKNRDKYAKDIK
                     TGKLVSKNMFRKNTEVVVKITSGSKNSQALSKHLDYISRDGNVELITNDFDRYAGEDE
                     ILEVKRIFKNEGSPIPLYKEGAKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMY
                     PNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFAKALNELGVEAK
                     ATNKKQREVEINQEFSVKLNANNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSY
                     YVSYKTKKGITTIWGQDLERIVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEV
                     VKTLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGVNNERDYTKQYRQRVLQEL
                     GNKSTIRRETAQERNSMRILSKQPMVHNTKRTQMLLHINALNQLQQGERGRSDNILRW
                     TSVRNNEIKRDG"
BASE COUNT        13079 a         4328 c         5117 g        10860 t
ORIGIN      
        1 attttccata tattcttttc gtaaaaatgt caaaaattat tacatttaag tcaaaaatta
       61 ttacatttaa gtcaatttta tttgaaaata agaggagtat ttaataattt ttgttgactt
      121 taatgtaagt gtatattaca tttaagtcaa ttttatttga aaaaattcta aaattgctac
      181 ctattgacat agatgtgata ctttggtata atttatttcg aagattaaaa tatttggtta
      241 catttaagtc aatcttatca ttttttaata caaggaatta gatgctatta aatattatta
      301 ttgaaaaaga tcaggatgga tattttgcac gcattctaga gcttgaaggt tgcgtttcgc
      361 aaggaaatac ctatgaagaa actttagcta atataaaaga agctggggag ctttatttag
      421 aaagccttgc aaatgaagaa aaaagaatta ttgaaaacaa aacaacttca attattccaa
      481 tggttttagc aaatgcctga attgcctaga atgactgcaa aagaagcgga aaagctttta
      541 ttgcaaaata attttttgat tgataggcaa aaaggcagtc atagaatcta taaaaaagga
      601 ctttatagaa tggttattcc tcatcatatt ggagaaatat tgcaccctaa aatcataaaa
      661 caactatttg agatcataga agtagcaaag gattaaaaaa tgccaaaaag aaatactatt
      721 gatactatta cactcggact ttttagtgat gaagatgttt ctataatctg cgaagataca
      781 attaaactgg aaaggggctc tgtagctgta ttaagtggca atagtgaagt aggcaagtct
      841 tttttagctt taaaggtatg tgctaatgct attaatgatg gcttaaaacc ttttttttgg
      901 agtgtagaag ataaaaataa agcaatttta ggacgcataa aaaatattga aagtttttat
      961 tcttttaata ctgcggaact tgaattttcg aatgaacttc caaaaatcaa taaagaacct
     1021 ataaattgct taaaagaaga acttaatgag ttagcagatt gcgatttaat tgttcttgat
     1081 acctttagtg catttttctc aacattaggc tttaaagatc aaaacaatca aaacgatgtg
     1141 caaaatttct ttaatattct aacagatata gcaaaatcaa ataatcaagc tatcttatta
     1201 cttcatcact tagacaaaaa aggcgaaagt cttatgggta gctctgttat tatcaatgct
     1261 cctagacttg tttataaact ttcgttcgaa aagggagaag ataaaaattc taccacctat
     1321 cgcttgcttg aggtgctaaa ggataataat aatatcaatg ctggagaatt tcaaaaaacg
     1381 attaaagtat tgcaaaattc tagtattgat gagccttcaa ttgtaaatct tagagctaac
     1441 agcattgatt ctaatacttt agagattatc aataaaaaag atatttctgc tgtaagtgtt
     1501 aatgaattag caaaaggcta tgtaacaatg aatgaaaata gaggtgtttt ttatttaagc
     1561 tcacgaaagc ttacagacac taatttttat aaagtattta aagaaaatga taataaaata
     1621 gattttaaaa tgacaggtgc gaatgactca tcatatgtca taagtttaaa gaactctttg
     1681 cttacgcaaa cgcataggaa tattttagat gctttatttt tatatatcaa aaaaaatgtg
     1741 gatacaagtg ttattaaaaa atatcaagaa aatttttggg atatggaagt aagattagag
     1801 ccttataaat tcttgaaaca atatcttaat aaaaattcta ataattactc ttggttgaaa
     1861 caaaaattta cagaaatctc tcgttttgcg tatgatttgg ctttcactca aaatgtagaa
     1921 gataaagata aaaaaacaat cactcaaaga gataaaggta ttttaatgtt tgactctgta
     1981 gagcgtatca caaaagaaaa tggaacaatt gtatctgtat tcgtgctaac agttcgtaga
     2041 gaatatatta aaaaactcga aacagaatct accctttctt atgatgatga tttatccaaa
     2101 attcttatta atttaaattc tttggtggca caagatttga ttagattttt aacaagtttt
     2161 cctgataaga aaattcttag ttatagtgag ttttgtgaaa ttaaagctta tagattttat
     2221 aaagaaagtt ctattatttc gaaacaaaag aaagagattg ttaaattaaa agataaactt
     2281 atagaatttg gaattaatgt ttatggcaaa ggcgtagaat ttgctaatta tgatgatgaa
     2341 ttttttcata ataagtataa aaatgaaaat gatttatttt tcatctatga aagcaataat
     2401 agagtaaaaa gatatattaa gcgtagtgat ccaatgaatc aattaaacac caaaagcaat
     2461 aaatttcttt tgcaaaaatc tttatttgat taacatttac aatcaaggag tgttgtatga
     2521 atgaatggga attagaaaga caaagacaaa taagatagac aaattgagcg ttttatttta
     2581 ttacaaaatt ttttatattt ttcttaaatg aaaatttagc ttccttttaa ttttcgtttt
     2641 ttgataaacc acaatagacc atcatagctt tttccattat ctttgtataa taacttccaa
     2701 atacttttaa tagataaatc tttatcaagc aaggtttgta ttttatctat atccttatca
     2761 taaatactat ttaatgagcc tttagggcgt cccagttttt ttccactagc tctagcattt
     2821 tctagtcctg ctttagttct ttgacttatc aaatctcttt cattttctgc taagtaagca
     2881 taaaccgata agattaattt agaagcagga ttattaaaat tactaagttc catttgtctt
     2941 aaaaataaga atttaatatt attagaatta aattcaagca ctaaattaat tatttctaac
     3001 atacttctac caagtcttga aagttctgtt gctattaata aatcacctgc ttttagtttt
     3061 tgttttaaat ccttgatttt tcttttctct tgagattttg tagaacttat ttttacttcc
     3121 aaaatttcat ccaaatgaat attgttttta tgacaatatt ccataatttc taacttttga
     3181 gagtctaatt cttgtttatt tgttgatact cttatgtatg ctatattcat cgttctaaat
     3241 cttttaactt ttgatttttt ggtgtttttt cagtaaattc tttaagtttt tgatgaaaat
     3301 ctttagcaca taagtcttgt atagtctctt ttaagctata ctgctctcct atttcagtaa
     3361 tatcaaactc tttaacacat tcgccaagcc aagtaaattt tttagtgagc ttattaacta
     3421 ttcttataac tcgtctttca tttattggct cttttgaagt ataacctgaa tattgtctat
     3481 gctcgaaacc attttcaagc ataaattttt taatcaaaga ataaggttct cttgtatctt
     3541 tgaaatattt ttcaagactt tttgtagata aatcaaaatt aattgctttg cgatttattc
     3601 ccaaattcct tctccttcag ctttacttgc agaaattaaa tcgctatttc cttctttttc
     3661 actaatccaa atccattctt ttgcattttt tgtaaaccat tcagaatcaa tcaaatattt
     3721 atatataaat aaagtcatac aacctaaatc atacttatcc cctttacaat gataagtttc
     3781 tttattaatt tttatcattc ctgattcttt agcatattca tctatcattt tatacatatc
     3841 ttctaaatta tatttgcctt cttttaaaat cttttcttca tctaatacta ttcttgtacc
     3901 taaaagtggg tatgccattt ttttatcctt tcatcaaaaa cctaacaaat tctagtaaaa
     3961 aatagctaat acttaaataa aagcttttga ataatattaa tttaattata aaactaaatt
     4021 taatttattt attaaataca aatttaagac ataaataaaa cgctcaattt tttaacgaaa
     4081 ggatatggat gaaaaaaagg ctattatcat taattttaat cagtcctatt tttgcatttg
     4141 gtgctggcgg tattgataaa gttaatacct ttatgcaaaa cttaagcatt gctttgtatg
     4201 cacttggtgg agttttactc acaattgcac ttatgtgggg tgcttccaaa attatgtatc
     4261 aagggcaaac tcttagagaa gttgcacctg tttttatcgg tggcgttatt tttggatcag
     4321 cttcggcaat agctggttat atcattacat aaataggact agctatggag aaaaatccac
     4381 tttttaaagg tttaacgcgt ccacctatga tttttggcgt tccgatgaca ccttttgtta
     4441 tagcgatggg atgtatcatt ttaattgcat tttatagtca aaacattttt ttagttggct
     4501 tttctattcc tgtgtttttt atcatgaaag caatgacaaa aagagatgat tttatttttc
     4561 gattaatgtt tttaaaaatg agatttttct ccaatcctgc ttccaaaaat tatcataagg
     4621 ttaaaactta cagcacaaac tcttatagac aaatgccgcc aaattctaat tttccaaaaa
     4681 tatctgtttt cggacttaat gcagaaccta gttttgaaaa attaattcct ttttcatcac
     4741 ttataaatga ttctgtagtc attacaaaag attatttttt aatgacaact tgggagattg
     4801 gaggaattag ttttgaagca gaagaagatg atgaactaga tattaaaaat gatcttttga
     4861 atatgctttt taaatctttt gctaacgaat ctgtaagctt ttattttcat aattgtagat
     4921 attctatcga agacaaatta acttcaaaat ttaataatgc ttttttagaa gaaattgaca
     4981 gaaaatatta tgagagtttt aagcaaggaa ctcttagaaa aaattcttta tatttaactc
     5041 ttattttcaa tcctttaaaa gtgaaaatag aaaaaacaac ttttatgaaa agttcttttg
     5101 aaaataaaag aaaaacaatt agcgtatttt tagctaaatt tagcgaattt gctgatagac
     5161 tagaagcaaa tattaaagat tttaacccaa aaagattaaa aacatattcc aaagatgata
     5221 aaacctactc taaacaacta gaattttata attatttact tggtggtaaa tttaatccta
     5281 taagagtatt accaagtcct atagaacagt accttaatgg caatttacaa aacatacaat
     5341 ttggacacga tactattcaa tttaaccaaa atgatagcac aaaaaaattt gctagatgca
     5401 ttgaaattaa agactataca aatgaaactt ttgcaggaat tttagatatc ctaatgtatt
     5461 tagatgtgga atacactgta actcaaagct tttctcctat tcctagagtg gatgcaaaat
     5521 cagcaatatc taaacagaaa aaacaactca ttgcaactga agatgatgga ttttcacaag
     5581 tagagcaaat agatgaagct ttggatcaac ttacaaatgg ggaaatctct tttggcaaat
     5641 atcatttttc aattcttgtg tatggaaata ctataaaaga atgtaaagac aacacaaatg
     5701 aagttgttac aaagatgaac gaattaggat ttggagtaac tttagcaacg atcgccctac
     5761 ctgcgacatt tttttcgcaa ctaccatcaa actttgctat ccgcccacgc attaatctta
     5821 tctcatccat taattattca tctttaattg ctctacataa tttttctatg ggcaaaagag
     5881 ataaaaactg ctggggtgac gctgttagca ttttaaaaac accaaacaaa caaccttatt
     5941 attttaattt tcaccaaagt tctggtgcaa ataaaaatga ttttggaaaa ttcttcctag
     6001 caaatacttt gattttaggt caaagcagtg gcggtaaaac agtgtttatg aactttattg
     6061 tagatcaaat gatgaaatac gctagcaaag atacatttcc tgatgatatt cctgaagata
     6121 aaagaaaatt tacagccatt tatttggata aagataaagg tgcgttaggc aatatacttt
     6181 gtgctggcgg tagatatatt agcattgaaa atggcaagcc gacaggattt aatcctttca
     6241 tggttgaaag cacacaagaa aatataagac aacttcaatc gctaatgaaa cttttagtaa
     6301 ctagaaataa tgaaattctt acaactagag aagaagaaat gctcaataat gctgttaatt
     6361 ctcttatgaa aggttttgaa aaagaggaaa gaaagtatcc tatttcttta cttttagaaa
     6421 acttaactga aaatgtagat gatgataatt ctcttaaatc aagattagca ctttttaaaa
     6481 aaggcaaaca atttggctgg gtatttgata acgaatacga caatttagat tttcctgacg
     6541 atatcaattt atttggaatt gatggaacag aatttcttga tgataaagat gtatcaggga
     6601 tattaagcta ttacattctt tggcgtgtaa tgagcttggc agatggtaga agactttgta
     6661 ttgatattga tgaagcttgg aagtggctag aaaatgaaat cgtgcaagaa gaagttaaaa
     6721 acaagtttaa aaccattaga aagcagaatg gatttttaag acttgctaca caaagtttag
     6781 aagacttttt aaagcttaaa aatgctgcaa ctcttataga acagtcatca actatggtat
     6841 ttttatctaa tccgaaagcc aaagaagaag aatatgttaa aggagtaggt ttaagttatg
     6901 atgagtatat gatcattaaa ggtttcaatc ctgtgaaaag acaattttta atcaaaagac
     6961 aagatgaaaa agtaatttgc actcttgatc ttagcccttt gggtaatgaa aatttaaaaa
     7021 tattatctac agaaacagca tacattgatg tcattgaaaa aattttttca caagaaaata
     7081 aaagtcttga tgaaaaagta ttagagctga aagaaattta taaaaactca taggagatga
     7141 aaaatgagta ataaagtgat tattaataaa caagaagtgc aatttgacac tcaaaataat
     7201 caaatctttt gcacaagttt agatgtggct aaggtttttg gaaaaagaca ttttcatgtt
     7261 ttaagggata ttgagaacat tttaaacgat ttgcgagaaa tagggacttc tcaagaccta
     7321 tccaattttg gggagaccta cagaaatact gaaattaggg gttttggcaa agttaaaggg
     7381 aaaacaagaa aagatcgttg ttataatcta actcgtgatg gtttttcact tttagcgatg
     7441 ggctttacag gtaaaaaagc attacaattt aaaattgcat ttattaatgc ttttaacgaa
     7501 atggaaaaac ttttacaaaa agaaattaaa agccctaaca aatacttaac agatttgatg
     7561 gaacttattt atccaaactt accacaaaac gattacaaag ttagtgtgat tatcacagat
     7621 aacccttatt ctaaagaagc taaaaatgta ttttctttga attatcttgt tgataatcgc
     7681 acaccaaaag atccaaagaa gttgcaatga gtgataaaga attacaaaaa gaaatattag
     7741 ctttagaaaa cgatgttaag caactagaag caactattga tgtaattaaa caaagaatca
     7801 ctcatcttaa agatattgct tgggatagac aaagtaaaaa agaaagttct caaatgtata
     7861 aagtgttaaa agaagataaa acacatacaa gggttaaaag taatgtagga gatattaaag
     7921 tagataaaga ctttatggat aaagaaatta aaaaacattt agataatcca aatttaagag
     7981 gaatggttac tacacaagag atgttatctt ttcctaaggt ggctaaaggt gtggaagcta
     8041 acaacgaagc aagaggctat acttggcaag taaaagcaaa cgatggaaat actttagttt
     8101 atggaagtag aaaatatgaa accaataacg aaaaaattca taggttagcg acaagccata
     8161 gtaaaacaga gaagaatgaa agacaagcgg aagtgggtgg gcgtagtcat ccccaccatc
     8221 ccatatttaa tgacttcaat tttcgcaaat ccgctgaaaa tattatatca caacaaaaca
     8281 aatccacaaa tgattttaaa gcaaaattag aagaatttag caccaaaaaa acaaatgcaa
     8341 ttgaatctat aaataaggag tttaaaagat gaaaaaatat tacaccaaca aaaaggagtt
     8401 aaacaatgaa taatgtaaat ctaatcggat acttaggaaa agattttgaa gtaggcacta
     8461 caaatagcgg aagagtttat gcaaaaaatt ctcttgcaat tacaaagcga tggaaaaatg
     8521 aaagaggcaa tgaagaaagt agcacgactt ggatacctat tgttttattt ggcaaaagtg
     8581 cagaaagtgc atcaacacac attaaaaaag gttctcagtt tgcgtgtagt ggagaattat
     8641 catccaatca atatcaagat gaagatggaa atactagaac aatgctaacc gtgattgtat
     8701 ctaaatttta ttggcttggc aaaaaagata aagatgacaa tggaacacaa aatccacaag
     8761 tcccaccaaa agagccaaat attgattatg aaaacacaaa tatagaatct gaagaaacac
     8821 aagtatttta agatttaagg ataaaaatgt ctataaaaaa tttaagtgta gaagaattag
     8881 cgcaagaatt agaaacttca aatcatgaaa agctgattaa agctttgttt ttatttgaaa
     8941 aaaattcttc aatggaagat cttaattcag atcaaataga aataatttta gatgaagtat
     9001 atgaatttta tatcaatcat aaatctatat cttctttttt acaagaagat ataaaccaag
     9061 cattagataa agctattgat aaagagcttt gcaaaaaaca agaaaaatca tttgaaaggt
     9121 aaaaaatgaa aaaaaatatc tttggtgtta ataaagccat agggaaatct catccccatg
     9181 aaaatggggc aagactaata agccttgact ataattatac aaaggagtat aattataact
     9241 atgagatttg tgtaactcaa tttaaccacc tcttttctga ggttaaattt agccacaggg
     9301 ttgcagccct atggctaacc ccacaaaatt atatccaaaa atttaaaaaa tctattctta
     9361 ttcttacttc cttattagtt ttgcctaact tagcatttag tgctggtatt cctgtagttg
     9421 atgtaacagc aaatcagcaa atggctacac aaaacgctaa acaagtggca gaatgggcta
     9481 aagatgcttc aagatggact gaaacagtag cacactatca aaaacaaatt caagcttaca
     9541 aagatgaact tttatcaaaa acaggcatta gagattcagt aacttttcta aaagatatta
     9601 aacaaatata ttcagatttt gctgaagttg ggcaaaatat tcaatcattt tacaatgatg
     9661 tattaagaga tccacaaaaa tttttaagtg ataaaggtaa tgaaattttt ggaaaatata
     9721 cgagctttga tcgatgtaat tttgattttt taagtcaatc agaaaaaaac atttgcaaaa
     9781 tgaatttaat cacttatgct gctcaagtag aaacctataa tcaagcttca aaacaaatgg
     9841 atacgattag tcaaacactc caaaaattgc aagataaatt agtaaattcc aaagatatta
     9901 aagaaagcac agatgttggc aatgctattc agttggaagt ggcaaaaatt caaatggtta
     9961 aaaatcaagt tgatttagcc aatgcaagtt atgaaaacca aagaaaaatt aaagaagata
    10021 tggctatgca agaatattct aagtcgttac aaaagccacg agaaagtgct atggaatttt
    10081 ttaagaacaa caaatgaatt tagatctttt tcaaactcta ggtaaaagca tacaacaaat
    10141 tgttgatgct ataagacaag taggcacaaa tgataaggtt gcagaactta gcgtattgct
    10201 ttctattatt atcactttag tcattatgta taaaggctac gaagtcttaa tgggtagaag
    10261 tcaaagccct attagagaat taacttggga tatagttgga aagcttgttg ccattacttt
    10321 tgccttaaat ttagggggtt ggctagattt aacaatttca acaatggatg gattatacga
    10381 gtgggcagga ggcggaacgc aaatgtataa aacactagat gaaatgtatg caaacacagc
    10441 acaacttaca aacataattt gggctaaatc aagtggtgtt ggaggtgcta ttttagctat
    10501 tgtagcaatg ctactttgtt atgtaggatt tgcaattgct gtagttcctg cacttacaat
    10561 ctttgttgtt actaccttca cacaaacact gcttgtaatc accgccccta tagtattttg
    10621 gcttttagtt tttaaagcca ctaaaaatgt ttttacacag tggataggac ttttactttc
    10681 aaatacttta gtcattttgc ttgtaggctt atttttgggt gtttttatgg agcaaatatc
    10741 aacttggatt aagtattttg caaaagtaac tcaagcagga gacgaagtat taggcacaag
    10801 tattttcttt gtcattgccg ctttagttct tgtcattatg attatttctg caaaacttta
    10861 tgccgaaaaa gttgcaaatg tttcaatgga aggagctatg ggcggagtaa taggttctgt
    10921 tttaaaccct gttggtagat tagcaggttg ggctggaggc aaagtcgcag gaaaaactgt
    10981 aaatacagca aaagctggtg gaaaattagc agccaaaggt actttggcta gtgctaaagg
    11041 cggttatagt tttgctaaaa aaatgtatga aagggctaga aatgcaggct aaattaattt
    11101 ttattttatt acttggtgtt ttatttttta gtgcttgtag cactaaaaat cagggtaaat
    11161 atgatgaatt ttttaacaat caaacaggat ggattcctgt taatactcaa aacaaagatt
    11221 taaataaagg aactatggat gaaaaatgag tttaatactg caatagatta tgaagcaagt
    11281 tttagatact taattgaaaa aagtaataaa agagcttggc ttattgcttt tatttctatt
    11341 tttatagcca ttatttccat tatagctgtt gttttactta ctcctttaaa aacaatagaa
    11401 ccttatgtaa taagagtaga caatactaca ggaatggttg atattttaac catgcttgat
    11461 gaaaaagaaa ttaaagcaaa tgaagcatta gataaatatt ttattagcac ttatgtaaaa
    11521 gctagagaag gctattatta tgatctttta aatcaagatt atttacttac tcaattaatg
    11581 agttctgaaa aagtagcaaa tgaatatagg gctttatatg aaggtgataa tgcaagagat
    11641 caaattctaa aaaactccaa tgaagtaagt gttcaaattt taagtattgt tttaggagaa
    11701 agtaacggag tgaaaactgc tacagtcagg gcaattatta ctacaaaaaa tttaacttcc
    11761 aaaggaacaa ctcaagcaac aaaagtaata acattaagtt atgactatat cttagcaaaa
    11821 gctagcgaag aaaacagatt tttaaatcct ttaggtttta aagtattaac ttatagaatt
    11881 gatgacgagg tggcacaatg aaaaaaataa tcttgataaa tttattgttg tgtagtttta
    11941 tttgggcttt aaatattcca aaaacttcta catttgataa aagaattgct tatgcaattt
    12001 ataatgcaaa cgatgtattt caaattaatg caaaaaatgg ctatgttagc gttttagaat
    12061 ttggtaccga tgaaagaatt atcaatactg ctacaggttt tgcagaaggt tgggatttaa
    12121 ttgaaaaaga caatctttta tttataaaac ctaaagctta taaaacacaa cttgttcaac
    12181 aagaaaacaa taatatagga gagagtcaag catcacaaga attcgtttta gatccaaatc
    12241 ctcatgattg gaaaactaac ctaattgtta ttacaaatct aaatacttat gtattcgatt
    12301 taaaacttgt aaaccaaaat aataacgcta cctataaact cagtttttct taccctaaaa
    12361 aagatttaaa agccgctaaa gaatttttag aagcacaaga acaagaaaat atacgcagag
    12421 atttaaataa aaataccatt cctagaaatt gggattttta tatgaaaatt aacaaaggta
    12481 gcgaagacat aagtccaaat tttgcttatg atgatggtgt ttttacatat cttggttttg
    12541 ataatactaa aacttttcct gctgttttca tgtatgataa tggtaaagaa agtattttaa
    12601 atactcatat taaaaaagat ggcaattatg aagttttagt aattcaaaaa attactaaac
    12661 aaatcttgtt aagaagtggc gataaagtcg ttggtatttt taatcgtggc tatgcaaaaa
    12721 atcctttaga taaaacaaga gaaacctcca atgaaaatat tcaaagagag ataaataaaa
    12781 aataaaacga atgaaactaa aaggaataag tatgcaagat aaagaacaag ataatttaga
    12841 caatgatttt gaaaatcata caagtgattt acacgatcaa aaaaatcatc ttagaaagat
    12901 acaagcttat gtaatttttg ctgtgggtgg attattatta gttttaatat tagtttattt
    12961 tttaaaatca tttttaagta gcaatacaac taccgaagaa gtacaaaaag aagataataa
    13021 agatttggca caaagtgtta aaacaaagga atttattcca cctcctccac aaaaaacatt
    13081 tgatgaacta attgcacaag aatcaccaaa accgacacaa gatttaatac ttgaacccaa
    13141 acctccaaag cctagaattg ttaaaggtgc aggagttact gttgtcgctt catctaataa
    13201 tgatggattt ggaaataatg gcacaggaaa cagggaagaa tttggagaaa aacctaacac
    13261 agtgtttgag tttggacaaa atggttcttt acaaaactct aataatttac aaggtggtag
    13321 taatggagat tttgttggag aggtcttcac tcccacaatc gctaaagtta gcgaatttga
    13381 tcaaaattta ctattaccta aaggaactta cataggctgt gctttaaaaa caagattggt
    13441 aagttctatt aaaggtggaa tcgcttgtat tgtatcaaat gatgtctatt ctgctaatgg
    13501 aaatactctt ttaattgaaa aaggtagcac tattacagga acttttaata ctggacaaat
    13561 ggatgatgga atggatagat tatttgtaat ttggcaagaa attagaacac cgaacaatat
    13621 cattatccct gtttattcag gtgctaccga tgaattaggt gcaagtggcg ttcaaggttg
    13681 ggtagatcat cattacttaa aacgatttgg ctctgctgtt ttactatcaa tgatagatga
    13741 ttcactggct atcttagcgg atcaaattgc aggtaaagat aataaaaata attatgccaa
    13801 ttacactgaa aatacaagag attctgcaaa agaaatcgca aatacagcac tagaaaaaat
    13861 gattgatatt aaacctacac tttataaaaa tcaaggtgat ttggtcggtg tttatgttaa
    13921 tcgtgatatt gatttttcaa aagtttataa acttacaagg aaaaagaatg tcaataacgc
    13981 tagataaata tactcaaaaa ttttttggag aatttttaaa agatgataat atcaatgaaa
    14041 tctgctataa cggcgataat aaaatttggg tacaaaactc taaaggatta tgggaatgta
    14101 tagatactaa acttgatttt gaacaagctg gacattttgc aactgcttca gcctcattca
    14161 aaaaagataa aatagatgta tcacgcccta ttcttagttg tattctagta ggtggagagc
    14221 gtatgcaaat tgttattcct cctgctacaa aaagcgaaca catttcaatt actattagaa
    14281 agccaagcaa aactcgcttt aaaatggaag atcatattaa aagcggactt tttgaagatt
    14341 taaatcctga tgataagaat aaaatcaaac caagcgatga agaattaatc aagctatatg
    14401 aagcaagaga ttatcaaaat tttatatcca aagctgttag ctatggtaaa aatattatta
    14461 tcgctggtga aacaggaagc ggtaaaacta cctttatgaa aactcttatt gattttataa
    14521 gccttgatga taggattatc acaatagaag atgttgaaga aatcaaattc tatgaacaca
    14581 aaaatttcgt gcaattattc tatcctagcg aagcaaaaag tacagatttt ttaaattctg
    14641 caacactttt aaaatcttgt ttaagaatga agcctgatag gattttacta gcagagctta
    14701 gaggtgctga aacttatgat tttattaatg ttttagctag tggtcatggt ggaagtatca
    14761 caagttgcca tgcaggaagc cccgaagaaa catttacacg acttgcttta atgactctac
    14821 aaaatccaca aggtcaatgc gtgccttttg aaattatcca aaaaacactt aaagacttaa
    14881 tagatattgt cgtgcatatc catgcccatc atggaaaaag gcgtattagc ggcatttatt
    14941 ttaaagaaat ggagagataa atgcaaaata ataaaagcat tcaaatgatt tttcttgcta
    15001 tagcgagttt tattctcact tacttaataa cgcccattgt ttttttcttt ttaaataaag
    15061 taaaaataat gaaagcgatt gaaatttata acataaattt tacgctacaa gcaatctcta
    15121 atggttatcc aaaaatatgg ctttctttag gtattacttt tggcatttgt tttgttgttt
    15181 tttctgtttt ggtgttatct ttaaaagcca aaaaatctca atttggcgaa gctagatttg
    15241 caaattttaa tgaaattaaa aaaatgaatt tattttcaga taatggaata attatcggaa
    15301 aatacaaggg aaagatttta agatttagcg gtcagcaatt tgtagcctta ggagcaccca
    15361 caagaagtgg taaaggcgta ggtatagtaa taccaaactt gttagagtgg cgagaaagtg
    15421 ctgttgttca agatattaaa caagaatgtt ttgactacac aagcaaatat agaaaagaga
    15481 ttttaggaca agaagtttat ttattcaatc cattttcaag acagacacat cgctataatc
    15541 ctttaactta tattgatatg agtgataaag agcattgcga tagtcaatta atggatttag
    15601 gtaacatact ctacccacaa gatggggatt ctacctcaaa atttttcaat ggcttagcac
    15661 aaaacttatt tattgggctt tgttatttat ggcgtgattt acaattaacc gattatggaa
    15721 aagaatttca aagtgcgttt gatattaatg taggagaatt taacttttac aatattttgc
    15781 aactctcaaa aggtttctca cttaaaaatg aaggaaaaac tttaaaagga tttgatgata
    15841 catacaattt cttatcttat tgtgaagttt tagatgaagc aaccataagg cgtttagaaa
    15901 cttattttaa tattaactca gatgctacta aatcaggtgt aatgagctct tttaatgctc
    15961 cgcttgtgcc atttgaaagt gaaacattaa gattaagcac agaaacaagc gattttgatt
    16021 tgcgagattt gcgtaaaaag aaaatgacaa tttatatagg aattacgcct gatcaattag
    16081 caaatgcaca atttatttta aatatttttt ggtcgcaact tattttatta aacaccaaag
    16141 aattgccaca aagcaataaa gatttaaaat atacttgttt aatggttatg gatgaattta
    16201 ctgcacctgg tagaattcct atctatcaat cagcaatcag ttttatggct ggttattggt
    16261 taagatcttt gatgatttat caatcaaatt cacaacttga aacacaacca cctttgggct
    16321 atggaaaaga aggagctaaa acactcttaa caaatcatgc ttgtcagatt ttctatgcgc
    16381 caagagagca agaagacgca gaagctatct ctaggatttt aggaaatact acttttaaaa
    16441 caaaatcaag aagtattaat acaggcaata atggaggtgg atcacatagt attagcgaag
    16501 caagtagggc tttaatgttg ccacaagaac ttagagaaat gccttttgaa aatgaactaa
    16561 ttactattga tagtggaaaa cctattttat gcaataaagc attttattat tcagattctt
    16621 attttatgga taaatttaaa gctgtttcga aaagtttatc aacaataaga aaaatccctt
    16681 cacgcaaaca attagaagat gcgatcttaa agggagaatg taaagtaaaa attcaaatta
    16741 taggagaaaa caatgataaa aaaatcgctt gacaatttag tcataatggc tttagttttt
    16801 ataatggtgg gttgctctac agccccaaaa ccaaaagaat tggatgataa ttctgcattg
    16861 agtatcaata attctatttt ggagaaaaaa tatagctttg ttcctaaaga tccttatttg
    16921 agcggattta attggactta tcatatcgtg gttgagaaaa aaactataga tgatgatttt
    16981 attaaaaatg atcttattac taaaactttt ttactcgcac acaattctac aaaaatcatt
    17041 ttagtaggta gaaaagattt aattgaacaa tataagcaat actttgaaaa aaatcaagtt
    17101 ttagcaccta tagaattaca gcctgtcaat cctattgagc gtgattttaa caaagttaat
    17161 attttatttt ttaataaaac aaatttttaa aggagagaaa aatgaaaaaa atattattcc
    17221 cattttgtgt ttttggtgta ataaatagtg ttaatgcttt agatttgcaa ttactatctg
    17281 gtgatactag aacttcttgc gaagtaattc tttgtttagc aagtccagtt aaaccacctg
    17341 aatgtgcatc ttctttagca aaatatttta gcattcactt taaaaaacct tggaaaacta
    17401 tccaagcaag gaaagaattt ttaaatttgt gtcctattga cacaacaaat gatccagaaa
    17461 tgtataaata taaaaatgat attttagtta acttagatgg agaatgctct acaactgcat
    17521 taaatcaaag aattgaaaaa tcaaaacaac ctttaaaagt tgaaaaaata tgcactggtg
    17581 gtgggcataa tggatcaaga gaatgcgtag aaataaaaac ttatggattt agaataaatc
    17641 ctgaacttac aaactcttgc aaacttttag cttcatcaaa atacacagat tatcatttaa
    17701 aatatacttg cgataagaaa ttttatgagc aaaaagattg ggaaagaggt tatgaattaa
    17761 aagaagtatc acaagaaatt tataatgctt tacctgtatc gcaaagagaa caaggagaaa
    17821 aattaactcc tataagttat ggagaattta ttaaactacc tgctaataaa agaaaacaag
    17881 aaggatttgg caagtattat agaatcgata ttgcttatta tcaaaaaata attattaaaa
    17941 aagattgctg gataaacgag aaataacaat gaatgaagaa attaattcta acgaaaataa
    18001 tctttttgaa atagttaatg aagataattc aaaaaatata gctatgcaaa actataatga
    18061 attattggaa aaatttgaaa atcttataaa aataattatt gctaaaatta atgttggtaa
    18121 gcaaaatgca caaaataata cagaagatgg tatttttaaa gatttagaaa gcaatattat
    18181 agagctagat aatacctatt tagctcttat ttcttatttt aaaaatcctc ctaatgatga
    18241 agagaaagaa attattaata aaaccatttc tattaaaaaa acaatggaag attttgctaa
    18301 atttgctaat gaaattcaaa aaatatcatt ggatgataaa cttaaacaat ataacgagca
    18361 aattaataaa ttttgcgaaa tagtagaata taaactttct cataatgcaa aaaattataa
    18421 tacttttctt gatcattttg ttgaagatgg aaaacaaaaa ttgaatacat tttcagaaat
    18481 ttttacaaaa atgacaaaaa atacaaaatg gtatcttata ttttttagtt ttacttctat
    18541 agggttaggt atagctcttg gcattttaat tttgcttact tatataaaat attcagaata
    18601 taacaattta aaagaaagag taagcacaat cactcaaggt ttagccacta tctctattga
    18661 tgaaaatagt aaaggaagct ttaccttgag ctttgcaaaa aacaaaaaaa ctattttcaa
    18721 tgagaataaa aatagtattc aaatcacact acaaggaggt gaatgaacag aacaattata
    18781 tacaaaaaaa tgcaaaaaac aaaaacaaat cataaaaaat ttaaaaagga gaaaaaatgg
    18841 catttggaaa attagtaaat gataagattg ttattgatac caataatgct ttaaactaca
    18901 agaataaaga aggtgatatt caacaaagaa aagtagatac tgctttaatc gatgttatta
    18961 aagaagctgg acaagttgct gcaatggaac acggagctgt gcttttttca gcaaaaataa
    19021 atgatgagtg gaaaaactat tttgttaata gagatgaaaa aactcacaat atagttttaa
    19081 aacctacaaa ttcacaaaat agagatgatt tcatatatat caactctaac ataaatgagc
    19141 aaggttattt ttactacaca attaatcaaa agcgagaagc tgcaaaagaa ttaattgaag
    19201 gaattgggat tatagaacac caaaaccaag atggaactaa aagtcactat ttagaaacta
    19261 atgtaaggct ttacaatgaa gaattaaaac aggaacttaa agaaaaaggt aatgagttta
    19321 tagctgtaat ttcaaatgct ggaattagaa ttgttaatga agctgaaatg aaagcacaaa
    19381 aacaagaaca acaaatacag caaactcaag aaattaaaga gcctgaaaaa actcaaaacc
    19441 aagagtttgg aagataaaaa tatgcacctc ataaaggtgc atatttatag ttattattat
    19501 ttattaatag taactataaa taacaaattt aaaagttatt ttttgacaag atgagtagtt
    19561 ttacaaaaaa tcaaactata gaaaaatcaa tagtaaaaaa atatcaatat ctttaaaaat
    19621 agtatattta aattaataat atataacatt aataactatt attttctaat atttattaat
    19681 aatatagcaa acaataagat aagatttttg aaaggcaaaa atgagattat ttatagctga
    19741 aaaacccgaa cttggtagag caattgcaga aggactagat ggcaattata aaagcggaga
    19801 aggatatata caaaaaggtg ataatattgt tacttgggct tttgggcata ttctagagct
    19861 tgcgaaacct gaagaatatg atgaaaaata taagttatgg aaacttgaag acttaccact
    19921 acccattaaa gaatttaaat acttacccaa aaaagaaagt aaaaaacaat taaaaattat
    19981 ttgcgattta atccatagcg acaagattac ttctattgta aattgtgggg atgcggatga
    20041 tgagggtcaa attcttgttg atgaaattat tcaatactcc aaaacttcta aacctgtatt
    20101 tagggtttta atcaatgatt taacaccaaa agcagtaaaa gaagaaatag caaaaattaa
    20161 gccaaatgca gattttaaag gaatgagcga aagaggtttt gcaagaagtc aagcagactg
    20221 gatagttggg ataaatctta ctagggctta caccataatg gcacgaaaaa atggatatga
    20281 gggtgtttta agcgtaggta gagttcaaac acctattttg tctcttatag ttaatagaga
    20341 taaagaattt gaaaatttta aaagtataga ttattattcc ttgctaggtg attttaatat
    20401 caacaataat actattaaag caagattgaa aacagaagat aaaattttag atgaaaattt
    20461 agctaaagag atcaaagaat cttgtgaaaa ccaaaatgca aaaattaatt taaaaataga
    20521 aaacaaaaaa gaatatccac cgctacctta taacctactt gttttacaag ctgaatgtgc
    20581 aaaacttttt ggttttagcc ctgataaaac attagaaatc actcaaaatt taagagaaaa
    20641 acataaggct ataacttata atagatcaga ttgtcaatat ttacctgaaa caatgtttga
    20701 acaagcacca aatattttaa atattataaa ggaaaattta aattctaatg atgaaattca
    20761 agctctcatt gctagcagtg atttaacaat aaaaagcaag gcttttaacg atgctaacat
    20821 ttcagcacac tatggaataa tccctaccca aaataaaatt tcatcgcaat taactcaaga
    20881 tgaattagtc gtttacaatc taatcgctaa aagatttatt atccaattct ttcatccgag
    20941 agaatatcaa actaatacaa ttaatttaga agtaaatcaa agaattttta ccgctactca
    21001 aaacaagaca acaaaaagtg gttttagaag tctttggcaa aatgtagata gcgaagaaga
    21061 acaagaaaat aatgagaatg atataaacga tttatctatc ttaaaaaatg gtgatattgc
    21121 aaaatgctct ttgatacaaa ttgaaaaaaa gcaaacaaag ccacgccctt actacactat
    21181 gacaacgcta cttaaagatt taaatagtgt cgcaaaatat gtgtctgatg aaagaattaa
    21241 aaaattgcta atggaaaaag ataaagacaa aaagggtgaa agtggtggca taggaacacc
    21301 tgcaacaaga tctaatcata taaaaacatt aattgaaaga gagtatatag aagtaagtaa
    21361 agataaaaaa caaattatca aatccactaa aaaaggtaga gatttaatta aactttctcc
    21421 aaaatcactt attactcctg acatgacagc attgtggttt gagcaacaaa aaatgataga
    21481 aatatcagaa ttaagaagag aacaattctt agaagaaatc acaaaagaag taattagcga
    21541 aattcaaaga attgataaaa atcaagagtt taaaatacta gataatgaaa acaaaccaaa
    21601 aattcaatgt ccgcaatgca ataaaggatt tttaaccaaa cgaaaaggga aatatggaaa
    21661 cttttggggt tgtagcgaat acatggaagg ttgcaaagcc atttatcctg ataacaaagg
    21721 cacaccaaac tttgaaacaa aacaagcaag caacgatact actcataaat gtccgcaatg
    21781 caataaagga tttttacaaa gaataaaaag taaaaatggt aatagttggt ggtggggttg
    21841 tagtgaattt aaacaaggtt gcaaggctat gtattatgac aataataatg gaaaacctaa
    21901 aataataaat gtataacatt aataaatatt aatttatttt aattaattta agttaatttt
    21961 aataaataat attttataat aattcaaata aattagaaac aaggttgtcc gagtttaatc
    22021 agaataaaag gagaaaatta tgaataacaa aagaaaagtt agggaatttc tgtcttatac
    22081 ggagaaatat ctgtcttatg tattatttat ttgtataggt tcttgtttcg ttgctttaat
    22141 actaagtgcg agcattgata gtgattttta ctcacttttt attattttag ctttaggaac
    22201 tacgatcagt cctcttattt gtatcgggtt ggttaaatta atagaaaaat taataaaaat
    22261 aataaaaaaa taaaaacaat gaaaattgca taaaaaatag ggtgagaaca ataatgcttg
    22321 attatgaaaa atttcaaaca atgagtaaag aagaatattt taaaaaatat aatgtcggaa
    22381 ttaggttttt gtttgggtgc gatatcaatc aaaaagatga aattgaaatg ataagcctta
    22441 gggttttttt gccaaagaag tattttcaag aatacaaaaa cattgatatt tttaaaacaa
    22501 tggacttatt taaaaaaaca ccattattta aagaattaat agagcaaagc attaagattg
    22561 attttgaaaa aagagaattt gtaatgcctg atttttttat taagcacgat atagaaatca
    22621 ttccttattt tacgcaaggt ggcgaaaaag aagaagaatt aagcaaagag aaattttttg
    22681 aacttttaaa acaaaacaag attaaagaat taaactattt atgctttttg ttttttggct
    22741 tgttttgtga agaagaatat gagtattttt gcaaagtaaa ggagtaaaaa atgatttcag
    22801 taacgctttt attttttctt tttggactaa acaaactttt gtttaatgct aaaaatacaa
    22861 tatacaaact attaagttac ataaaaattc acgcgatttt tattaattta agaactctac
    22921 tttttttaat attggtattt aatgcggatc tatcttatat gggaacagtt ttatttctag
    22981 ttgatttaat gacagctata tctatatttt ttgcttatgc tcaattagct tatggtttct
    23041 caattaaaga ttgtatgttt tatcttgtgt gtggaaaaat agataaagaa tggttaaagg
    23101 agatacaaaa atgactgaag aaaaattaat taaaaaagaa atattttctt atacaatttt
    23161 tatagcaatt atcgctttaa tttgcatttt taaaaatgaa atttgggaat ttgtaaaatt
    23221 tattttttct aatttagatt tcatatgtgg taattttgca aattttgtaa gcgaagataa
    23281 tataatattt tttccagtta caactctttt aatagtattt actatagcta tttgtgctgt
    23341 ttggggatta tctaatgttt tatctctctc attatttata atgcctatat ttgtcgcagt
    23401 tttttatatt tttaatattg atataagttt aaaaaacctt tatagctctt attttatatt
    23461 tttaatcatt attaatggtc ttttatggag tgcaaatcaa agatgaaaaa aattacaata
    23521 gtagcatacg caatatgttt tttatcaggc ttatggtttt tatttagtgc tattaaagag
    23581 cattttggca ttttatcttt tattcttgga attgcactta tttattttgg tgttattaat
    23641 ataaaaagaa ttttgaatga ttctaacgag aataaaaata gcaaaagaat taaaagaaaa
    23701 actgaaagag aaagagaaga gctaatcttg aaaaagatag gagagtaata aaatgctaga
    23761 gatagataat aataaagaat ttaaaatctt aagactaaac aaacaagaaa ttttaaaaat
    23821 tggaggttat ggcatttgcg acagttgtaa taaagcttta agcaatgatg gatttatgat
    23881 ctgtgtttta tttagttgct attgcgaaaa atgctaccaa aaatggtata aagttgcgat
    23941 taatcataaa gaagatagag aaattgaaaa agatgtttat gaaaatatta aatcgaaaat
    24001 aactaatatt tatttttagt tcttattaat aaatattagt atataatatt atacaaaaat
    24061 ataaaaaagg ttttttatga taatatctgt tgtaaataaa aaaggtggtg ttggaaaaac
    24121 tccttttgct ttttcaattg ctaaagattt agaatatttt ttacaaagca atgataattc
    24181 tattatagaa aagatttatc ctgaaaaagc aaaaatttta ccaactccaa aaaaaataga
    24241 taattgcgtt tatgattttg gtggttttgt agaaaaaggg gtattagata ttattaaaga
    24301 aagtaataag attattattc cttgcacgag taattacaat tctttactta gaacattgga
    24361 aactttaaat gaaataggta atgatgatag agtttgtatc ttggttacag attatagaga
    24421 tgagaaagag aaaaggcaaa tttgtgaaac tcttgaaagc aattttacag atttaaatct
    24481 ctttttcttt aaattttcaa agataattga aaattctatg agtagtggag cttcttttac
    24541 tgaactttat aatgaaaaca atctttcaag attaagttat acaaattttt tcaatgagta
    24601 tcaaagactt ttagatttta ttagaaagga taaataataa tggaaaaaaa accctttaca
    24661 atagcagaag ctttaaactc tgaaacaagc tctcaaaaga cttttaagaa agctgataaa
    24721 aaatcggctg gaagaaaaac tatagatcaa aaactaagaa gagacaattt agtagtttgc
    24781 agacttaatg aacaagaaat ggaaattttg aaaaaattaa tggatttaga tttagtaagt
    24841 gaatatggta cttatataag aaaattaatc ttaaaagagg cacgagcttt aaatattaat
    24901 agttaaaaat gttaaaatat ccttgcaaaa aacaaaaatt acaaggatac aaatgagtaa
    24961 aaaaacaaaa agacaaattg aagatgaaaa agattatggc ggtcgaagtt tatttgatct
    25021 aatcgaatta gaattttcac aaggagaaga aaatgagcaa cagaacagag aattatccga
    25081 acatagagaa gttacagaca atattgaacg aactagcatt tcatcaaata caccaagcgt
    25141 ggatagacaa gaaaattccg caatacagtt tgataatact agagagatgg gcagagtttt
    25201 atccgaacac aatcaagaat ctaggaatgt cagatctcat gacactagca ttaccacaag
    25261 ctcaaatgga attagcaatt ttggagagca aagaagcaaa caagaagaga gatcaggggc
    25321 taacagatat ggagatacta gcggaagaac agataaatct caatcaatac atagcaatag
    25381 aaccccaaat ttattctcct ttatttcaag aaatgatgat gaaagacaag gaacagatac
    25441 aagaagaaac aatcaacaat cagtattgga aactgcaaca agaaatgatg gatatgaaag
    25501 aagaagcctc aaatctggac aaaaattaga ttttgtaagc gatgatgaaa tctatctagg
    25561 ttctttaaaa gatagatttc aaaaaaacct ccaagccatt aaactttcaa aaactattga
    25621 acaagaaaat cgctacgcta ccaaacaaga acaagaaatt ctaaataaat tttcaggatg
    25681 gggcggtatt cctcaagctt ttgatcatca gaataaagaa tgggaaaaag aatttaaaga
    25741 acttattagc acacttgatt atgcagaata tgaaaaggca aaaacttcaa ctttagatgc
    25801 tttttacact ccaaaaatta ttatcgatac aatttatcaa gggcttaatc agttaggatt
    25861 taataatgat ggtcacacca aagaaatatt tgagccaagt gcaggtatag gctctttttt
    25921 gtcttatgca aaaaattata gcgataaata tcattttact tgcgtagagc ttgatactat
    25981 aagtgcaaat atattaaagc atttacaccc aaatcaaaca atttataata aagcatttca
    26041 gcaccattta tttgataagc catacgatgc ttttataggt aatccacctt ttggtcaaaa
    26101 aaagatttta gatttaaatg atactacact taataaaaca agtgtgcata attattttat
    26161 cggtaacgca attaaaaatt taaaagaaga tggaattgct gcttttgtag tatcaagtta
    26221 ttttttagat tctaaaaata gcacaataag aaattatata gccgaacaag caacattttt
    26281 aggtgctgta agattgccaa ataatgcttt taaaaaacga gctaatacag aagttactac
    26341 cgatattatc ttttttaaaa aaggtaaaga tttaaatata gataaatctt ggctggaaag
    26401 cgtagaatac tatgacgatc gttttgatga agctgaaaaa agaggtatgc accctgatgt
    26461 ttttaatgac tttagaataa atgagtattt taaaaataat ccacaaaata tcttaggaaa
    26521 aatgaatatt aaaagctctc aatatggtta tagtttagaa tgcttggatg atggaagaga
    26581 tttaaaaatc gctttagaaa attttacaaa aaccttacct aaaaacattt ataaatatca
    26641 agaaacaaaa atcaagctat cttattacag gattgataga gaatcgcctg aatacgaaaa
    26701 atatagcaaa actctaagta agttaaaaga tggaaattat tttgaataca ataatgaaat
    26761 ctacatgaaa atcagaagcg atgatgagtt agtcttttca aaacctgttt taaatgaaca
    26821 cgatacaaga agaattaaaa aactcattgc tcttagagat caatttaaca ctcttattga
    26881 atatgaaaaa aatgaatcta gcgatctttt agtagaaaat caaagaaaat atctaaacaa
    26941 gctttatgat gaatttgtag ccaaagaagg atatttaaat agagatgcaa ataaaaaagc
    27001 ctttagagaa gatgtggaag caaacaaaat tttggcacta gaaaaaaatt atagcagtgg
    27061 tatttcaaaa agtgtagctt taaaagaagg tatagatcct attgcaccaa gtgcaacaaa
    27121 agcagatatt tttttcaaaa gaactataaa tgcacaaaaa gaaattaaaa tctcgactcc
    27181 aaaagaagca ttaattgcta gtatcaatga atatgggaga attgatttaa aatttttaga
    27241 aacgaattta aatcagcctt tagaagaaac ccttaaatct ttagagcaag atagattaat
    27301 ctttaaagat cacaaaaatc ctgcaaatta tgttttggct gaaaaatatc tttctggcaa
    27361 tgttaaagca aagcacaaag aagtaaaaaa attagtagaa gatggcttta atgaatttgt
    27421 taataattta gaaagcttag aacaagtctt gcctaaagat ttaaaagcgg ttgatatttc
    27481 aataagctta gggacaacat ggatacctat aaaatattac aaacaattta tagaagaaac
    27541 cttacaaatt actcctaaag attatgattt atttttaatg gaaaaaacag gcgaatggag
    27601 tcttaaaggt tttggtcatt ctttaagtcc ttacatcaga tcacaatatg ctaccgagaa
    27661 aataggttgt tttgatttat ttgagcatgg attattaaga aagcctattc gcatttatga
    27721 taaaaaacta gatccatcag gaaaagaaat cagagaatta aatcctaaag aaactgcaat
    27781 cgctaattct aaattagaaa atttaaaaaa tgaatttata gaatggattt ataaagacta
    27841 tgatagacgc acagatttgg aaaatatcta taatgaaagg tttaatacaa atatagaacc
    27901 acaatacaat ggagagcatt tagaacttcc aaatttcaat gccaatatca aactcaaaaa
    27961 acaccaaaaa aatgctatat atagggctat tcaagaaaat agtattattt ttgatcatca
    28021 agtaggcgct ggaaaaactt tagtggcaat ttgctctgtg atggagcaaa aaagaatggg
    28081 gcttttaaat aaacccttaa ttgtagtccc taatcattta gcaagacaat ggaatgatga
    28141 gttttatcac gcctatacaa atgcaaacat tttagttgct acaaatgatg atttaaaaaa
    28201 agataataga gaaaagtttt tttccaaaat tgcaacaaat aattttgatg ccatcattat
    28261 gacacactcg caatttaaat taatccccgc accttatgaa gttatcaaaa aacaatatga
    28321 agaagatatt aatatcttag aacaaacatt agaaaaaaaa caaaacgatg ataatgttat
    28381 gcgatattct gtaaaagact tagaaaaacg cattgaaaat tttaaggtga aattgagtga
    28441 tttgcaaact acacataaaa aatctaaagc aatagatttt tcagaattag gaattgatgc
    28501 attaattatt gatgaagcac atgagtttaa aaatttactc attacaactt caatgggtga
    28561 tataagtggt cttggcaatt taaaaggctc acaaaaagct tatgatcttt attctaaaac
    28621 acaatatatt cacgagcaaa ataaaaaact ctatttttta acaggaacgc ctataagcaa
    28681 ttcaattaca gaactttata ctttgcaaag atacatacaa ccaaatatct taaaagaaaa
    28741 agggatacaa gcttttgatt cttgggcttc tacttttgga gaagttacaa acgcttggga
    28801 gcttgatagt tctggaataa attataaaat cgttgcaaga tttaacaaat tcaaaaatgt
    28861 tcctgaactt tctaccatgt ataaaagcgt ggctgatatt gtaacaaata atgatattat
    28921 gaaatatcaa aaagatttcg tgccaaagct ttataatgat aaacctatta atatcgttgc
    28981 tcctagaagt gaagaaatag cagaatttat aggcattcaa gatgaaaatg gaagatggaa
    29041 tgaaggctct attgtgtgga gaatggagca tcaacaagat gatattacta gaaataactt
    29101 acttgcttgt accacagatg ctagaaaagc tggacttgat tttagactta ttaatccaca
    29161 ttgtgatgat tatgcaaatt ctaaaattaa taagcttatt gaaaatgttt ttaatgagta
    29221 taatgcttgg aatgatgata aaggcacaca attaatattt tgtgatttat ccactccaaa
    29281 acaacactca caaaaagttg ctctaaatgg caatattgct acaccaaatt taaataaaga
    29341 agaatttgtc aatattaatg aaacaataga acaaacagaa gaagagaata gcaaaagcct
    29401 tgatgaactc ttagcagaac aagcaaaatt tgatgtatat actgatatct taaaaaaact
    29461 tgtcgcaaaa ggtattccac aaaatgaaat tcgtttcatt cacgatgcaa aaacagactt
    29521 acaaaaagga cagctttttg cagatatgaa ctcaggaaaa gctagaattt taattggatc
    29581 aacgcaaaaa atgggtgctg gaacaaatgt gcaaaaaaga attgtagcct tacaccattt
    29641 agattgccct tggcgtccga gcgatttaga acaaagaagc ggtagggtta taagacaagg
    29701 caatgaactc tttatgagag atccacaaaa ctttagagta aaagagttta gatatgcaac
    29761 tgaaagaacc tatgatgcta gaatgtggca agtcattgaa agcaaagcaa gatccataga
    29821 acaatttaga aaagctggtg ctgatgtaag aaccttagaa gatgttacaa gtggtgcagc
    29881 tgatgctgca gaaatgaaag cagaagcaac aggcaatcca ctcattttac tacaggtgca
    29941 attaaatagt gatctaagac aagaagaaat gctttatagt ggttataaaa gacaaataca
    30001 caataatgaa gaaagtctta taactaatct ttcaaagatt gaactactaa aaaaagatat
    30061 agctaaaatg gaaattttaa attcaatcat caaagaaaac aatagcgagc attttcaagg
    30121 aaagtattac attaatgatg atgaaaaaga tttcattgtc tttaaaaatg atacgagtga
    30181 tctaaacaaa agcagacaag cagaacttga aagaaatttt gaaaagattg tcaaaacaat
    30241 agctgatgac tatcaaaaag aatataaggt tttagagttt aaaggactgc ttataagcgg
    30301 agaaagaaca gatttaaaca ctcttaattt ttatgtgagt actactgatg gtaaaacaat
    30361 aatcgagcct gaaaatttga tttataaaag agatgaaaaa acttttttta aattggaaag
    30421 ttatgtaaat tttggtggtt ttgtaaagag attaaacaat ttttataatg acttagaaaa
    30481 atttactcaa ctcaataaaa ataagataga aaatcttgaa aaagaaattg tggagctaaa
    30541 aagcattaca ggagataaca ctccaaaata caaaagaaag gattatttag aggcattaag
    30601 agaagacaat cgcattatca tggatgaaat agaaaaaatg agtaagcaaa aaaactacaa
    30661 aagtgatttt gtgccaaaat ctccaaagat tttggaagat ttaaataaac aaagcaaaac
    30721 tataaaagaa aatgaaattg gctattagta attacttaaa gttttttatt taatagcgtt
    30781 catgacaaac cttaactata atttctaagt ctagttaatt agacttagaa tattaaaaat
    30841 taattaatac catttctttc tattcttcta ttttctctat cttttaaagt agatttaata
    30901 atatttatac atttttcaaa aaattcacca tatctttctt tatcatcttc tctcaaatca
    30961 aacaaatcaa aaagcatgta agatgtttgt cctcgatcta aaatattttt tggataatac
    31021 tttaaagata aaagttttct gtaatcatct tcattaaatt ctaagcaaga aattttatac
    31081 ttgaattttt gataaaattc atataaatca caaagatcgc tacattctct agcttccatt
    31141 ataaaattac ttcctataca aaaataagtt tgatataaac caaattcatt atttcgattt
    31201 attacaatta ttctagtatg atcaagatta tttttagaag tgacaatata aattctatca
    31261 aattcttcag cctcttttat aaattgggag ttaaaatttg atttaataag atcacttgca
    31321 aatggagagc cttcccctgt caatagccaa ttatgattga ttttaaatct taatgcaaat
    31381 ttttctaaaa aatcaaaatc tggatacatt ttaaaattta aaatttgatt gatttttgca
    31441 taattacttt cacccattgc tcttgaacaa gttatttcac ttaattttaa ctcattaaag
    31501 atatgattaa tcctattaat taaatcatta tgatctttcg aaaaaacatt attcatcatg
    31561 ttttctccta aattatatga gtttagtgaa gcaaatccat cctgaaaatt cttaatcgta
    31621 cttctaagtt tataattttc aagcattaat tctaaggcta ctttagctgt tttggatatt
    31681 ctcgaactat cactccaaga atctattgtg gtttttgata atcctaattt ttcagccaat
    31741 tctgtcctac tcatcctcaa agtgttacaa acttctttga acataaaaaa actccttttg
    31801 gaaaataatt tttgaaatta aagcataata aaataaaaaa gtcaagtata tacatattac
    31861 ataatatttt atatttttta tgtaatataa tctaatatta attctcttat aaattatcca
    31921 tctcttttaa tctcattatt cctaacactt gtccatcgca agatattatc ggatcgtcct
    31981 cgctctcctt gctgtaactg attgagtgca ttgatgtgca aaagcatttg agttcgtttt
    32041 gtgttatgaa ccataggctg tttggacaat attcgcatag agtttctttc ttgggcagtt
    32101 tctcttcgga tagttgattt attaccgagc tcttgtaaga ctctctgtct atattgtttt
    32161 gtataatctc tctcattatt cactccttta tcttgtataa ttttatattt ttttgttgtt
    32221 ttggctttgt tgatctgttt taaatctttc tctctaccta ttactgatac ttcccaaata
    32281 ggttttttaa gtgttttaac aacttcttgc cacttgttat taatttttgc ctttcttttt
    32341 atctcatatt cttcttgccc tactatttta aatcttgcat attcacccct taaaacttta
    32401 ttttctctca caatcctttc taaatcttgt ccccaaattg tagttattcc ttttttggtt
    32461 ttatagctca cataataact ttttttggca tttttatctg tgctaaattg atagtttgct
    32521 tctccgaaat ccataacttg ataatagtgc atttttattt ttggtgcttg attaatctca
    32581 ttatttgcat ttaatttaac tgaaaattct tgatttattt ctacttctct ttgcttttta
    32641 tttgtagcct ttgcttcaac tcctaactca tttaatgctt ttgcaaattc tgctcttaaa
    32701 tttgctaaat ctgctttttt tggattaatt cttttgccat ttttatccgc aactttcaag
    32761 caaacatggc aatgcggatt atccgtatca ttatgaaaag caactacaaa aaaattattt
    32821 ggatacattc tttttaaagt agtaattaca gcttgttgta atttttcttt tggtgttgta
    32881 gaatgttctt tcatggaaaa aaccatatta atggtatgtc ttttttcttt agcaccttcc
    32941 ttatataatg gaataggaga tccttcattt ttgaaaattc ttttaacttc taaaatctca
    33001 tcttctcccg catatctatc aaaatcgttt gtaattaatt ctacatttcc atcacgagaa
    33061 atataatcaa gatgttttga aagtgcttga gaatttttag aacctgaagt aatttttaca
    33121 acgacttctg tattttttct aaacatattt ttactaacaa gcttacctgt ttttatatct
    33181 ttggcgtatt tatctctatt tttattgatg taatttagtg gtagctttga agcattttct
    33241 attttagtaa aaactttttt agcaattatt tcatcatcaa atattcttat actacgcgac
    33301 attaaattct ttcattattt ttttctatta tagccccaag ctgatcggat aatatatcaa
    33361 ttttatctct aatattatcc atag
//
LOCUS       DARGEY010000007        28686 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.007, whole genome shotgun sequence.
ACCESSION   DARGEY010000007 DARGEY010000000
VERSION     DARGEY010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 28686)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28686)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28686
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.007"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..315)
                     /locus_tag="SF008_000324"
     CDS             complement(<1..315)
                     /locus_tag="SF008_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8232635.1"
                     /translation="MGFRINTNVAALNAKANSDLNSRALDQSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQS"
     gene            complement(410..2260)
                     /locus_tag="SF008_000325"
     CDS             complement(410..2260)
                     /locus_tag="SF008_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8232636.1"
                     /translation="MTILEKNIQALLSGVNEPLGNKLLKFIQNKTCFRFSIDENLNIY
                     DKTHNVFMYENLEEELNFFYQGILEKTPRYPFICIYGIGNALLIKNLAKHYKHLFVFE
                     SEIELFILALSTIDLSEELCSGKIYLVDVCEPKMELQLSILFDQKDMFEWLNLYEMFI
                     SCNFYKMYYQDVILKTDQTCMDNIFVVIRNFDPNDQLTTICYKQFLQNIPHLLQNIPF
                     QRLLSERKAKFDTAVVVSAGPSLHKQLALLRQYQENVVIFCADGALNMLENEGIVADY
                     VLNLDIEDLAVKFFNCSKSLDYSKTIAVLAVNTHPNVIDCLINKFLYCIALRDEYLYK
                     QFHLDDFGYIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDKDGNSHSKGFAFGENS
                     NAEKNFQLLQVPSYYKDGNKVTTHVSWNDYRIKLEYLIARNSEINFYNATEGGAYINF
                     AKNTSFKECCEKFFTQKKPCFDIPKTFTYNRSLKFLSKVFLHLKNDLQNAQDILRDAH
                     LLNNVLIGVVNIKNPLPLDFLQNIYKSIGDFNSVLDDDKFIQDGILKGVLYYRGSFLS
                     EAIKKDLKDEAYYLLNFISAYQKWLEKFIERLEIKNAIIKDTVLKYGNLI"
     gene            complement(2270..3520)
                     /locus_tag="SF008_000326"
     CDS             complement(2270..3520)
                     /locus_tag="SF008_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8232637.1"
                     /translation="MIVSKTYEIDSCDDVELDIKRESKLEFKLCFDDEKEIKALVFII
                     PGLGGDVDENYREHLAEFVAGEFNVAVASVNYHCIGNRPQTGSTFYLDDIDKLILKVS
                     CEAADIKLPYDVDKIQDYKQMSEIFHFVNNQIVEGKQKGNFTPNYFLNLHVSLQPAKN
                     EYQNFGIMQAQDLLNVALYLKKHAPFDTMGGGIPVIMIGSSHGGYLAHLAAKIAPWLI
                     DGVIDNSSYAKFLWRLIGFGKEMDFVQYSEFSTFDFFHHIKTHCSTKTFWTSNSSSNN
                     FFSIPRRMIRYILEPKHLEIQTNYPKPCYTSYHSFYDKEIAPPDEKLELYKYLEQFGF
                     DAELYMIKNPDQVDGRFIKSLEHGMGMSIKTLISKELPLMLEKIKQNPKKDCKEKYIS
                     YPCEDLLYKFSEKDDKISLKIDKI"
     gene            complement(3520..4035)
                     /locus_tag="SF008_000327"
     CDS             complement(3520..4035)
                     /locus_tag="SF008_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEG8232638.1"
                     /translation="MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNL
                     KTLINDISIYTLKKDHLSSIKTMSNVSGVENVDLGNFNGTKEVNFRVGDDKECLKLLF
                     INKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
                     ASKTYLLIGGM"
     gene            complement(4036..5043)
                     /gene="tsaD"
                     /locus_tag="SF008_000328"
     CDS             complement(4036..5043)
                     /gene="tsaD"
                     /locus_tag="SF008_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEG8232639.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLECKFHKKISQELDHSIYGG
                     VVPELAARLHSEALPKILKQCKEHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDMGILLVSGGHTMVLYLKDDASLELLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNIPLKHSKELAYSFSGLKNAVRL
                     EILKHENLSDDIKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASANLNLRS
                     RLQNLCQKYNTNLKLAPLKFCSDNALMIARAAVDAYEKKEFVSIEEDILSPKNKNFSR
                     I"
     gene            complement(5040..6434)
                     /locus_tag="SF008_000329"
     CDS             complement(5040..6434)
                     /locus_tag="SF008_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HEG8232640.1"
                     /translation="MKFFLTILFFITSIFALELDFSVGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFASISPKDPD
                     YKTVQRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASK
                     YPDLENIATQTVNSVNSSLADPKHAYHLKNTKTQELGDTEMLKALTYFVISNHKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPQGVDKAINRELEVKLFNDR
                     ILLSLKNPRKVINYVPFPVNKELNYNTSNELTAVIAEGNSFYIQYGNRFQTRLYPEYL
                     EFSDAFNEVTFQVDGNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHSKDESGILV
                     HKKNMQTQYSLDMAGKIYRVEFYELRGANLQQLLEANINSKLIKNAKNLDLNTLKMAR
                     SKDKFLGSILVEFE"
     gene            complement(6436..7506)
                     /locus_tag="SF008_000330"
     CDS             complement(6436..7506)
                     /locus_tag="SF008_000330"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEG8232641.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIRISALACGDNIALLNEQIARF
                     KPKFVAIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGSFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     KYKIKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAIDFSKIPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDIAKCIFKALDHFGV
                     PKISSIEEVFEYDFKTREYLRS"
     gene            complement(7503..8228)
                     /locus_tag="SF008_000331"
     CDS             complement(7503..8228)
                     /locus_tag="SF008_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEG8232642.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVVGYLVYKKASLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSPTSPNKTLEGVI
                     GGLICASVIGTILGVFVYSFWLSLLCSFFVAIFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVAFL"
     gene            complement(8237..8575)
                     /locus_tag="SF008_000332"
     CDS             complement(8237..8575)
                     /locus_tag="SF008_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232643.1"
                     /translation="MPVSPLGNINYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            complement(8577..9884)
                     /locus_tag="SF008_000333"
     CDS             complement(8577..9884)
                     /locus_tag="SF008_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HEG8232644.1"
                     /translation="MKYTELLQLQTFFSQFKKIDFIKRINDNILELSFDRERFIFDLT
                     RAMSAIYTAKFNAKNYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSY
                     ESKIYFEFTGKNTNVILTDEKDLIIEALRHIDKSYRVVKPNVILESLKPYKMDENFEE
                     IKDFADYFSRKFTSIYESKIKQIKNLKLAQVDKKIQNLQELFSSLDEENSLLLKALEY
                     RKRADVLFANLSVLKDYEREFKLDDFEGKELEFKLEFNPKQSANLYYKNAKKLEQKAK
                     NLNIQRQNLKEKLDFTLSLKELLLQAKSEIELEILLPKKNSKKNQDHKQEDLVANFYF
                     NEFKICVGKNEKGNEFLLKNAKKDDLWLHVRDIPSAHTLIVSNKQKISLDVIEFAARL
                     CVSFSKLKKGSYWVDYTLKNFVKVQQKAFVNYTNFKSINITKD"
     gene            9947..10522
                     /locus_tag="SF008_000334"
     CDS             9947..10522
                     /locus_tag="SF008_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HEG8232645.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVNKFSKI
                     FKNVYVSAKEDKFENHFSLIKDSLEFEVYSPMLALYSILSNFKNEFVFVLSVDSPKVG
                     KNELLKMLPFLEQNYKIIIAKTPLHKHPLCGFYHSSLAQTCKNFLEKNEQKIGLLFSE
                     IKTKFVEFEDEDAFLNLNFYEEYEKFKSELR"
     gene            10519..11508
                     /locus_tag="SF008_000335"
     CDS             10519..11508
                     /locus_tag="SF008_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HEG8232646.1"
                     /translation="MRKIALFLSLCVFIWASDLQQALKYEKQGDYKKAMEIYKKLALK
                     NSSVLISREQNNSSEATQMQNSITIKKEEKQDFSRLALANYLGENESFNPLGISSYKM
                     NYFLPFAYSFNSLGVNNNKSEAKFQLSVKKRLFENLLGLDEKYYIAYTQTSWWQIYEH
                     SSPFRETNYQPEFFIDFPLYLKDYEFFNNLRVGILHESNGKGDENLQSRSWNRIYVST
                     AILYNKFLFVPRLWYRIPENKKDDDNPAILHYMGNFDVNLAYLGDDYFINLMLRNNLK
                     FHNNKGAIQVDLGYDIFNNGIYWYLQYFNGYGESLIDYNKHLQRLSTGFLISY"
     gene            11594..12562
                     /locus_tag="SF008_000336"
     CDS             11594..12562
                     /locus_tag="SF008_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8232647.1"
                     /translation="MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQL
                     EIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FTGASFFTQAIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
                     YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNL
                     GISYNGILFLGLMIVGIITSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALC
                     GALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKAYA"
     gene            12555..13493
                     /locus_tag="SF008_000337"
     CDS             12555..13493
                     /locus_tag="SF008_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HEG8232648.1"
                     /translation="MRKKMLILSFLTLGMIGIFILVGLNGFDEYALKSRFLQIAAIII
                     VAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDVLILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVVNITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISMVINFLGGIYFIYLVLKGNKL"
     gene            13490..14245
                     /locus_tag="SF008_000338"
     CDS             13490..14245
                     /locus_tag="SF008_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8232649.1"
                     /translation="MIKLKNITKFYDNKVIISDLSLDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPSSGEIYIDGMNLKNYKEQILAQKISILKQQNNINLRLKVEELVAFGRFP
                     HSQGRLNTNDKIKINEALEYMELSNLRNEFLDTLSGGQKQRVFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKDGKLLKQG
                     SKDEIINQENLKQIYDMDIPVSQINGKKICIYF"
     gene            14258..15250
                     /gene="ceuB"
                     /locus_tag="SF008_000339"
     CDS             14258..15250
                     /gene="ceuB"
                     /locus_tag="SF008_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
                     /protein_id="HEG8232650.1"
                     /translation="MKKSLVFAFFAFFLSLILTACNSNSNENNASSTIKTNTATVKVL
                     PISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVAGVPAKNLP
                     KYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNA
                     NFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKIS
                     AFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVIDRNIIVGNK
                     ERAQGILDNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK"
     gene            complement(15323..15412)
                     /locus_tag="SF008_000340"
     tRNA            complement(15323..15412)
                     /locus_tag="SF008_000340"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(15376..15378),aa:Ser,seq:gct)
     gene            complement(15476..16030)
                     /locus_tag="SF008_000341"
     CDS             complement(15476..16030)
                     /locus_tag="SF008_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232651.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEYLKTNGLKVPSNTNIIKSKDKGITIGGTHYSANITQK
                     STNEYNITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            complement(16166..17998)
                     /locus_tag="SF008_000342"
     CDS             complement(16166..17998)
                     /locus_tag="SF008_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HEG8232652.1"
                     /translation="MKKNILRLGIVVLVLLIVGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADAKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            complement(18013..18528)
                     /gene="nrfH"
                     /locus_tag="SF008_000343"
     CDS             complement(18013..18528)
                     /gene="nrfH"
                     /locus_tag="SF008_000343"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HEG8232653.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYNEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
     gene            18716..20800
                     /locus_tag="SF008_000344"
     CDS             18716..20800
                     /locus_tag="SF008_000344"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HEG8232654.1"
                     /translation="MQTSPDMFINRELSWLRFNSRVLDQCSKNLPLLEKLKFIAIYCT
                     NLDEFYMIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLERYFNEITS
                     ELEKENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLNNLSFSLAV
                     KICDKAHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPGYKLLASAA
                     FRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVEFLNTHMKI
                     FHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFDAVEKEDIL
                     IIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASDGKQVTVMV
                     ELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLKFYMHLSTG
                     NYNASSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPNQIKEKVLE
                     MIRIETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCLKPDEEYSK
                     NIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIYDERSKAKL
                     AQFLRLQLSDNVLAYKLKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTLKKDTDQSR
                     ATHLASKLFKEN"
     gene            complement(20943..21893)
                     /locus_tag="SF008_000345"
                     /pseudo
     CDS             complement(20943..21893)
                     /locus_tag="SF008_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799189.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(22745..23202)
                     /locus_tag="SF008_000346"
                     /pseudo
     CDS             complement(22745..23202)
                     /locus_tag="SF008_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002898691.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate ABC transporter"
     gene            complement(23408..23766)
                     /gene="ssrA"
                     /locus_tag="SF008_000347"
     tmRNA           complement(23408..23766)
                     /gene="ssrA"
                     /locus_tag="SF008_000347"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(23767..24177)
                     /locus_tag="SF008_000348"
     CDS             complement(23767..24177)
                     /locus_tag="SF008_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HEG8232655.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            24268..25275
                     /gene="ruvB"
                     /locus_tag="SF008_000349"
     CDS             24268..25275
                     /gene="ruvB"
                     /locus_tag="SF008_000349"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEG8232656.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASTKSYSALKLNYEKTLFE
                     E"
     gene            25279..26322
                     /locus_tag="SF008_000350"
     CDS             25279..26322
                     /locus_tag="SF008_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEG8232657.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITM
                     FYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASNNLNSALVIFIYSVIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(26352..27743)
                     /gene="fumC"
                     /locus_tag="SF008_000351"
     CDS             complement(26352..27743)
                     /gene="fumC"
                     /locus_tag="SF008_000351"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HEG8232658.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDGIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFISSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRVKIDHNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESAMELGLVSEEDFN
                     KFVDPTKMIGSKA"
     gene            complement(27799..>28686)
                     /locus_tag="SF008_000352"
     CDS             complement(27799..>28686)
                     /locus_tag="SF008_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HEG8232659.1"
                     /translation="MLFTLHPLNINNFAQNNNILLASTYLPRIFSNEEYFWHLTPSYK
                     YYKDKDFSGQKTGANISLGENFSSGFLAYALSLSSAKFNFNNGSDLKSYNMDLLLNYN
                     HDLDFIKILSGLGIGVGFNTLNRFVVEQPIEGKYKTLQTSAQLGVTKDIILGQDFIFN
                     PLMYFTHSFFYQEDFKENKSPFAKNYESLKHHSINANLGFNLAKNIEQDDYQASFSTF
                     VIFEKRIYGRTLENKASFVDFPIAFIQKYKLKDNILSQGFNSEFLYKNNVFWQFMLMN
                     RFSHNAYELHLMSSVGKRF"
BASE COUNT         9732 a         4824 c         4004 g        10126 t
ORIGIN      
        1 gctttgacca tcttgagcag cttgagtcgc tttagtcttg atggtatcta agattttaag
       61 ttgctcatcc atagccttat ctgcagtttg caagatacct aaagcatcat taccattaga
      121 tatagcctga cccaaagtat ttgcctgaga tcttaaacta tctgctatcg ccatccctga
      181 agcatcatct gctgcggagt tgattctaag acctgaactg agtcttgaaa gtgattgatc
      241 taatgctctg ctgtttagat ccgaatttgc tttagcattt aatgctgcaa catttgtgtt
      301 aatacgaaat cccattttaa atccttttaa ataaattcaa gtccatccat gaacttgtta
      361 taaactatat cgtttaaaag gaaaaatagt ttagagtttt tataaaattt tatatcaaat
      421 ttccatattt taacactgta tcttttatga tggcattttt tatttctagc ctctcaataa
      481 acttttcaag ccatttttga taagcgctaa taaaatttaa aagataatac gcctcatctt
      541 tcaaatcttt ttttatagct tcagataaaa aactcccacg ataatacaat acccctttta
      601 aaataccatc ctgtataaac ttatcatcat ctaaaacaga attaaaatca ccgatacttt
      661 tgtaaatatt ttgcaaaaaa tctaaaggca gaggattttt tatatttact acgccaatta
      721 agacattatt tagcaaatga gcatctcgca aaatatcttg agcgttttga aggtcatttt
      781 ttaaatgcaa aaaaacttta gataaaaatt taagtgaacg attataagta aaagtttttg
      841 gaatatcaaa gcaaggtttt ttctgagtaa aaaatttttc acaacattcc ttgaaacttg
      901 tattctttgc aaaattaata taagcacccc cctctgtagc attgtaaaaa tttatctcgc
      961 tatttcttgc aataagatat tccagcttta tgcgataatc attccagcta acatgagtgg
     1021 taactttatt accatcctta taataagatg ggacttgaag aagttgaaaa tttttttcag
     1081 catttgaatt ttcaccaaat gcaaaacctt tagagtgaga atttccatct ttatcaaaag
     1141 ctaaatcttg tcctatcata atgatatttt taaatcctaa agccaaagct aaagtataag
     1201 aaaaatggct tacatgggta cctgtatcta tataaccaaa atcatccaaa tgaaactgct
     1261 tatataaata ctcatctctt agcgcgatac aataaagaaa tttatttatt aaacaatcta
     1321 tcacattagg gtgcgtattg accgctaaaa ccgctatggt tttagaataa tctaaggatt
     1381 ttgaacaatt aaaaaatttc actgccaaat cttctatatc caaattcaat acatagtctg
     1441 caacaatacc ctcattttca agcatattta aagcaccatc tgcacaaaaa ataactacat
     1501 tttcttgata ttgtcttaac aaagcaagtt gtttatgaag actaggacca gctgaaacta
     1561 caacggctgt atcaaatttg gccttacgct cgcttaaaag tctttgaaaa ggtatatttt
     1621 gtaataaatg gggtatattt tgcaaaaact gcttatagca aatagttgtt aattgatcat
     1681 tgggatcaaa atttctaata accacaaaaa tattatccat acatgtttga tcagttttca
     1741 atataacatc ttgataatac attttataaa aattacaact tataaacatt tcataaagat
     1801 ttaaccattc gaacatatct ttttgatcaa ataatatact aagctgaagc tccatttttg
     1861 gctcacaaac atccacaaga taaatttttc cactacaaag ctcttcactc aaatctatcg
     1921 tgcttaaagc taggataaaa agttctattt cactttcaaa tacaaaaaga tgtttatagt
     1981 gtttagctaa atttttaatc agtaaagcat tgcctatacc ataaatacat ataaaaggat
     2041 atctaggagt tttttctaaa ataccttgat agaaaaaatt taattcttct tctaagtttt
     2101 catacatgaa aacattatga gttttatcat agatattcaa attttcatct atactaaaac
     2161 gaaaacaagt tttattttgt atgaatttta aaagtttatt tcctaagggt tcatttaccc
     2221 cacttaataa agcttgtatg tttttttcta gtatggtcat tagatttcct taaattttat
     2281 ctatttttag tgatattttg tcatcttttt cgctaaattt atacaacaaa tcctcacaag
     2341 gataagagat gtatttttct ttacaatctt tttttggatt ttgttttatt ttttctagca
     2401 ttaaaggaag ttctttggaa attaaagttt ttatagacat tcccatgcca tgttctaaac
     2461 ttttgataaa tctaccatca acttgatctg gattttttat catataaagc tctgcatcaa
     2521 acccaaattg ttctaaatat ttgtaaagtt ctaatttttc atcaggtgga gctatttctt
     2581 tatcataaaa agaatgataa cttgtatagc atggttttgg ataatttgtt tgaatttcaa
     2641 gatgctttgg ttctaagata tatcttatca ttctccttgg tattgaaaaa aaattatttg
     2701 aacttgaatt acttgtccaa aaagtttttg tcgagcaatg tgttttaata tgatgaaaaa
     2761 aatcaaaagt agaaaattcg ctatattgca caaaatccat ttcctttcca aaacctataa
     2821 gacgccaaag aaatttagca taacttgagt tatctataac tccatctatt agccaaggtg
     2881 caatcttagc cgccaaatgc gctaaatatc ccccgtgaga actacctatc atgataactg
     2941 gtataccccc ccccatagta tcaaaaggag catgtttttt aagataaagt gcaacattta
     3001 aaagatcttg agcttgcatg attccaaaat tttgatattc gttttttgca ggttgcaaac
     3061 tcacatgtaa atttagaaaa taatttggtg taaaattacc tttttgctta ccttcaacta
     3121 tttgattatt tacaaaatga aaaatttcac tcatttgttt ataatcttga attttatcaa
     3181 catcataagg aagcttgata tccgcagctt cacaacttac ttttaaaata agcttgtcta
     3241 tgtcatctaa ataaaaagtt gatccagttt gaggacgatt acctatacaa tgataattca
     3301 cacttgctac agccacatta aattcgcctg ctacaaattc agctaagtgt tcacggtaat
     3361 tttcatccac atctccacca agcccaggga tgataaacac taaagctttt atttcttttt
     3421 catcatcaaa acaaagctta aattcaagct ttgattctct ttttatatca agttctacat
     3481 catcacaaga gtcaatctca taagttttac tcactatcat tacattcccc ctattaaaag
     3541 ataagtttta ctcgctaggt ttttaaaatt ttcattctta cttaagatca cacaagcttt
     3601 attactagaa gagcttgtaa agtctatatt ttctaaatct tcatggcttt gattggctgc
     3661 gttaatgata gcatttttac ttgcttcatt gcttgaaatt cccatgagta taaaatcagc
     3721 tttatttata aaaagaagtt ttaagcattc tttatcatcg cctacgcgaa aatttacttc
     3781 ttttgtgcca ttaaaattgc caagatcgac attttcaacc ccacttacat tactcatcgt
     3841 ttttatagag cttaaatgat ccttttttaa agtataaatg cttatatcgt tgatcaaagt
     3901 tttaaggtta tttaaagact tactaacttc agcttcatcc ttacttgaac tcatttttgg
     3961 taaagcaata gcggctaaaa ttcctaaaat aacaatcaca aaaacaagtt ctaatatggt
     4021 aaaagctttt ttcatttata tccttgaaaa atttttattt ttagggctta aaatatcttc
     4081 ttctatgctt acaaattcct ttttttcata agcatcaacc gcagctcttg ctatcatcaa
     4141 agcattatca gagcagaatt ttaaaggagc tagttttaaa tttgtattat atttttgaca
     4201 taaattttgc aaacgcgaac gcaagttaag atttgcacta gctccaccta caacgccaaa
     4261 atttttaaat ttataaagat taaaaatttt ttctaattta tccatgatat gatcacaagc
     4321 tgtattttca aaggcataag ctatttctgc ttttatatca tcgcttaaat tttcatgctt
     4381 taaaatttcc aaacgcactg catttttaag ccctgaaaaa ctataagcga gttctttaga
     4441 atgctttaaa ggtatattaa aagagatatt tttaagtttg gcgttttttg ctaaattttc
     4501 tatgatgacc ccaccaggat aacctaaatt catcatttta gccactttat caaaactttc
     4561 tccaaagcta tcatcatttg tacttgctaa aagctctaag cttgcatcat ctttaagata
     4621 aagcaccata gtgtgcccac cactaacaag taaaattccc atatctaaag aaattttttc
     4681 ttctaaaaaa agactataaa tatgaccttt aagatgattt atagggatta agggtaaatt
     4741 tagagcactt gctaaggttt ttgccataga aattccactg agcaaagaaa cgctaagccc
     4801 aggttcattt gtcacagcta tggcacaaag atttttaaaa tgctctttgc attgcttaag
     4861 tatctttggc aaagcctcgc tatgaagtct tgcagcaagt tcaggtacca ctcccccata
     4921 gatactatga tctaattctt gggaaatttt tttatgaaat ttacattcta aggtattttt
     4981 atcaatgata gctatagaac tatcatcaca agaactttct atagctagga taagattttt
     5041 cattcaaatt ccactaaaat agaacctaag aatttatctt ttgatcttgc cattttaaga
     5101 gtatttaaat ccaaattttt agcgtttttg atcaacttgc tattgatatt tgcctctaaa
     5161 agttgttgca aatttgcacc tcttaactca taaaattcca ctctataaat tttacctgcc
     5221 atgtctaaag aatattgtgt ttgcatattt tttttatgaa ctaaaatacc actttcatct
     5281 tttgagtgat caaagcctat gatatttacg cgcacattag ctatctttgg aataagaaaa
     5341 ttctctttta ctttcacctt ggttccaaaa ggaacggtgg tttcattgcc atcaacttga
     5401 aaagttacct cattaaaagc atcgctaaat tctaaatact caggatataa tcttgtttga
     5461 aaacgattgc catactggat ataaaaagaa tttccttctg cgataacagc agtaagttca
     5521 ttacttgtgt tataatttaa ctctttattt accggaaaag gcacatagtt gataaccttt
     5581 cttggatttt ttaaagaaag taaaattcta tcattaaaaa gcttcacttc aagctctcgg
     5641 tttatggctt tatcaacccc ttgtggagtg agttcgaaat ctctgctaaa ttcaattcct
     5701 gcagttttta aataattttc aattgccaaa agatgataat aagctcttaa atttacaggc
     5761 agatttttac ttgcttcatt tgcaaaagcg gctttgtgat ttgaaatcac aaaataagtt
     5821 aaagctttaa gcatttccgt atcgccaagc tcttgggttt tggtgttttt aagatgataa
     5881 gcatgctttg gatcagcaag tgaagaattg acactattta cggtttgagt ggcgatattt
     5941 tcaagatcag ggtatttgct tgcattgatt tcgcttgtat caatcacact tgaatttccc
     6001 caacgcttag gattttgcat cgcatcgata taagtaggtt tataaaaacc ccaaccatcg
     6061 tgaagattga tcaccatact aacttcagga agtaaaataa gctctttaat gcgttgaacg
     6121 gttttataat caggatcttt tgggctaatg cttgcaaatt tacggtttaa atccccatta
     6181 ttcccacgag aacgcttgat aatgctatca aaagctaaat ttggagccac tataatctta
     6241 cccttagtga tattataatc actcaaaagc aaacttgccg catgaaatcc accaggctca
     6301 tcgccttgaa ttccaccaaa aattaaaact gtattattat catctagact ttttccattt
     6361 tctcctacgc taaagtctag ctctaaagca aaaatgcttg ttataaaaaa taaaattgtt
     6421 aaaaaaaatt tcattttaac tccttaaata ctctcttgtt ttaaaatcat actcaaaaac
     6481 ttcttctatg cttgaaattt taggtactcc aaaatgatca agggctttaa aaatgcattt
     6541 agcaatgtct aaaaatccac ttttattttc taaaaaatta taaacaccaa cttcattagc
     6601 agcattgatg ataacaccta aatttggctc ttttaaaaat gtatttttaa gcttaaaaat
     6661 agggtatttt tttgtgctga ttggatgaaa ttttaaagca ggtattttac taaaatcaat
     6721 agcctctaaa ataggcgtat cttgtttttc aaatatagca tctgaaatag ctagtttcat
     6781 atctgctttt gaaaaatacg ccgtgctagc tccattttta aattcacaca ttgcatgcac
     6841 taaagatctt ggttctatta aagcatcaat ttctttaaaa tcatataaat gataagcctc
     6901 tataatctca aaaagcttat ttgccatagt cgcactatct atagtgatct ttgctcccat
     6961 gttccaatta ggatgtttta aagcatcttt gacactgact tgatttaaat ctttgatttt
     7021 atacttataa aaagctccgc cgcttgctgt gatataaagt tttgctatat tttttttacc
     7081 ttcgagtaaa aattttaaag ctgcatgctc actatcaacg ggtaaaaatt tagccccttt
     7141 caaaaaactc ccagctacta caagactttc tttgttagct aaagctatgt ttttgccaag
     7201 ctctttagcc tttaaagtgc ttttaagtcc tgcaaaacct acaatggcat tgagtaaaag
     7261 cttatcttga cattctgtta aaatttgctc taaaccttct tgccctataa aaactctatc
     7321 gtgtttaact aaatgcttat tttttgaatc ttttatggca acaaatttgg gtttaaacct
     7381 tgcgatttgt tcatttaaaa gagcgatgtt atccccgcaa gctaaagcag aaatacgaat
     7441 gttttttaaa gcagcaagtt taagagcgtt tactcctatg ctgcccgtgc ttccaaaaag
     7501 tatcataaaa aagcaaccat cacaaaagca gcaatgatca ctgcatcgat cctatcaagc
     7561 acacctccat gaccagggat aagatctcca ctatctttta cacctgcttc tcttttaaaa
     7621 taactctcaa gcaaatctcc aatcactgca aaaatcgcta caaaaaacga acaaagtaaa
     7681 gaaagccaaa aactataaac aaaaactccc aaaatagttc caataacact cgcacaaatc
     7741 aaaccaccta taacaccttc taaggtttta tttggacttg ttggagaaaa aggagtttta
     7801 cccataagtt ttccgataaa atacgcccca ctatcgcaag ctgcaacgat aatgataagc
     7861 caaaaaagcg caaacatacc ctgatctaaa tacacttgcc aaagtgctaa aataggcaaa
     7921 ctaggataaa tataaataag agctggtttt aaggaagcct ttttataaac caaatatcca
     7981 acgactaata acaaagctaa aatcccaaaa agcaaagctt tatgcgataa acttcccaaa
     8041 ataaaagcta tagccaaagg gataatagaa atattttcta aagcaaaaag tttttttgct
     8101 tcactaaaag ataaatacaa taaaaccgca aaaacgataa aattgataaa aaattgatca
     8161 atcaacgcga taataataat agcccctatc atcacaagag ctgaaataat tctagttgta
     8221 ttaaacatat ttttccttat atactaatat ctaagcgatg aatgctttgt gcgtctttaa
     8281 aatttggatc tttagactca tcttcttcat ttttctcatc atcgctggtt ttagcttctt
     8341 gattgtgttt tttctttttt tcttcttgtt cggctttttc tttgatctct tctttgattt
     8401 catgagtctc attgactttc tcaagcttgt ttaaagtttt ttctttttca ttaaattcag
     8461 ccatatttag cgtagctgca aaaccttctt ttgcaagctc attgcttgct tgtgtagctg
     8521 gataagccat attctgattt atataattga tatttcctaa agggctaact ggcattttaa
     8581 tcctttgtga tattaatact tttaaaattt gtataattta caaacgcctt ttgctgaacc
     8641 ttaacaaaat tttttaaggt ataatcgacc caatacgaac ctttctttaa cttagaaaag
     8701 cttacacaaa gccttgcagc aaattctatc acatcgaggc tgattttttg cttgtttgat
     8761 acaatcaaag tatgtgcgct aggaatatcc cttacatgaa gccacaaatc atctttttta
     8821 gcatttttaa gtaaaaattc attgcctttt tcatttttac ccacgcaaat tttaaactcg
     8881 ttaaaataaa aatttgccac aagatcttct tgtttatgat cttgattttt tttgctattt
     8941 tttttaggta gtaaaatttc aagctctatc tcactcttag cttgaagcaa taattctttc
     9001 aaactcaagg taaaatctaa cttttctttt aaattttgtc tttgtatgtt taaattttta
     9061 gctttttgtt ctaatttttt agcattttta taatataaat tagcgctttg cttaggatta
     9121 aattcaagct taaattcaag ctctttgcct tcaaaatcat caagcttaaa ttccctttca
     9181 taatctttta aaacactcaa atttgcaaac aatacatcag ccctttttct gtattctaaa
     9241 gcttttaaga gtaaagaatt ttcttcatct aaactagaaa aaagttcttg taaattttgt
     9301 atttttttat ccacttgtgc aagttttaaa ttttttattt gtttgatttt actctcataa
     9361 atgcttgtaa atttgcgaga aaaataatct gcaaagtctt taatttcctc aaaattttca
     9421 tccattttat aaggctttaa agactctaaa atcacattag gttttacaac acgataactt
     9481 ttatcaatgt gccttaaagc ctctatgatc aaatcttttt catctgtaag aataacattg
     9541 gtatttttac ccgtaaattc aaaataaatt ttgctctcat agcttttata agccttatta
     9601 gcttttacac taaaacataa aatacgattg ccttcaagga ctttaacttc ctttataaaa
     9661 gcattgctaa aatacttttt aagcataaaa tcaaaaggtg cattataatt ttttgcatta
     9721 aatttagctg tataaatcgc actcattgca cgagtaagat caaaaataaa tctttctcta
     9781 tcaaagctta attccaaaat attgtcattg atacgcttga taaaatcgat ttttttaaac
     9841 tgagaaaaaa aagtttgtaa ttgtaaaagt tctgtgtatt tcataaaaga aattataaaa
     9901 tattttggcg aattttgtgg tagaattaca ttaaaaaagg aaatttgtgc agcttaatga
     9961 gctaaattgc gtgattttat gtggtggtaa atctagtcgt atgggacaag ataaaagcaa
    10021 attgattctt aaaaatcaaa atttaactca atttcaagta aataaatttt ctaaaatttt
    10081 taaaaatgtc tatgtgagtg cgaaagaaga caaatttgaa aaccatttta gcttgataaa
    10141 agattcttta gaatttgaag tttactctcc tatgcttgcg ctttactcta tactttcaaa
    10201 ttttaaaaat gaatttgttt ttgttttaag tgtagatagt cctaaagtag gtaaaaatga
    10261 gcttttaaaa atgcttcctt ttttagagca aaactataaa ataatcatag ccaaaacccc
    10321 tttacataaa catcccttat gtggctttta tcacagctct ttagctcaaa cttgtaaaaa
    10381 tttcttagaa aaaaatgaac aaaaaatagg acttttattt tctgagatta aaaccaaatt
    10441 tgtagaattt gaagatgaag atgctttttt aaatcttaat ttttatgaag aatatgaaaa
    10501 atttaaaagc gagttaagat gagaaaaatt gctttatttt taagcttatg cgtttttata
    10561 tgggctagtg atttacaaca agctttaaag tatgaaaaac aaggcgatta taaaaaagct
    10621 atggaaattt acaaaaaact cgctttaaaa aattcatctg ttttgatttc tcgagaacaa
    10681 aataactcaa gcgaagcaac acaaatgcaa aattctatca ctataaaaaa agaagaaaaa
    10741 caagactttt ctcgcttagc tttggctaat tatcttggtg aaaatgaaag ctttaatccc
    10801 cttggcatta gctcttataa gatgaattat tttttacctt ttgcttatag ttttaattct
    10861 ttaggagtaa ataataataa gagtgaggcg aaattccaac ttagtgttaa aaaaagactt
    10921 tttgaaaatt tactaggact agatgaaaaa tattatatag cctatactca aacttcttgg
    10981 tggcaaattt atgagcattc ttctcctttt agagaaacca actatcaacc agaatttttt
    11041 atagattttc ctttgtatct taaagattat gaatttttta acaatctacg cgtaggtata
    11101 ttgcatgaaa gcaatggcaa gggagatgag aatttacaat ctcgctcatg gaatagaatt
    11161 tatgtatcta ctgctatttt atataataaa tttttatttg ttccacgcct ttggtataga
    11221 attcctgaaa acaaaaaaga tgatgataat cctgctatct tgcattatat gggaaatttt
    11281 gatgtgaatt tagcgtattt gggcgatgat tattttatca atcttatgct aagaaacaat
    11341 cttaaattcc acaataacaa aggtgctata caagttgatc taggatatga tatttttaat
    11401 aacggaattt attggtattt acaatacttt aatggctatg gagaaagcct tatagactat
    11461 aacaaacact tgcaaagact ttccactgga tttttgattt cttactaaaa tatcctttgt
    11521 agttttatca tttcttaaaa caaatttcat tacaatttca tttttgataa ttattattac
    11581 tataaggaaa gatttgtttt ttaagcatat attgagttta aaagtgctta tagctttact
    11641 tttattcttt ggaatgataa gtttatttat aggagttatc agtatcaatg taaaagatat
    11701 tcttaatctt aactccactc aactagaaat cataaccctc acaagaattc ctagacttat
    11761 agcgatttta ctcacaggaa tgagtcttag tatatgtggg cttatcatgc aacaactcac
    11821 gcaaaataaa ttcgtttctc caactacagc agggactatg gattgtgcta aatttggcat
    11881 acttatttct ttaatatttt ttactggagc gtcttttttc actcaagcta tcattgcttc
    11941 tgtatttgca cttttgggtt cttttatatt tattcaaatt ttaagaaaaa tcaaactcaa
    12001 agatgtgatt tttgtacctt tgataggctt gatgtttgga ggcattatta gtgctataac
    12061 tacttttttt gcctatgctt taaattatat acaaaatatc caaggctggt tacaaggcag
    12121 tatggcaaat gttatgcagg gaaattatga attgctctac atttctttac cactttttat
    12181 acttgcttat tttttagctc ataaaatcac catagttggc atgggcgaag atatagcttt
    12241 aaatcttgga atttcttata atgggatatt atttttaggc ttgatgattg taggcattat
    12301 cactagctta gtgattgtaa gcgttggaat tatccctttt ttagggctaa ttatcccaaa
    12361 tttagtagct ctttatctag gtgataatct tagaaaaaat cttatctata tagcactttg
    12421 tggagctttg tttttacttg tttgcgatat catttcaaga cttgtcatct ttccttttga
    12481 aatgccttta agtatcacta caggtgtttt aggatcttta atctttatct ttcttttgct
    12541 aaaaaggaaa gcttatgcgt aaaaaaatgc tgattttaag ctttttaaca cttggtatga
    12601 tagggatttt tatacttgtg ggtttaaatg gctttgatga gtatgcctta aaaagtcgtt
    12661 ttttacaaat tgcagctatt atcatagtag ctatttgtat cgctgtttca acagtaatct
    12721 ttcaaacttt atgcaataac aaaattctaa cccctgccat cataggatta gattctttat
    12781 atatgttact tcaaagtgct cttatctttt cttttggtgc agctaattta agtgtttata
    12841 aaaacgatat caatttttta atcactctag tttgtatggt ggttttttca ctaggacttt
    12901 ataaaatttt atttagtagc gatagaagta tttatcttat catgctttta ggcttagttt
    12961 ttggaacact ttttagcact ttaagctctt tttttgaagt attaatcgac cctgatgaat
    13021 tcatggtaat acaaggaaga atgtttgcta gtttcgataa tattgctttt gatgttttaa
    13081 ttcttgctta tatcattagc tttttaagtt ttatatggat ttttcgctat atgaaatttt
    13141 tagatccttt aaatttaggc aaagatttag cgataaattt agggataaat tatcaaaaaa
    13201 tttcaaaaca attgatgatt atcatagcta ttttaacttc tattagcacc gcacttgtag
    13261 gtcctataac ctttttaggg cttttggtgg taaatatcac ttatgaacta tttaaaactg
    13321 caaagcatag tattttgcta agcgcttgta tacttattag tattttggct ttgcttggag
    13381 gggtgttttt tgtctctaga gtttttgatt ataatgccac tataagcatg gttattaatt
    13441 tcttaggtgg gatatatttt atctatcttg tattaaaggg taataaatta tgattaaact
    13501 aaaaaatatc accaaatttt atgataataa agtcattatt tcagatctta gccttgattt
    13561 tcataaaggc aaaatcactt ctataatagg agccaatggc gctggaaaat ccactctttt
    13621 agctctagca agtcgtttga taaaacctag tagtggagaa atttatatcg atggaatgaa
    13681 tttaaaaaat tataaagagc aaatcttagc acaaaaaatt tccattctca aacaacaaaa
    13741 caatatcaat ttaagattaa aagttgaaga actagtcgct tttgggcgtt ttccgcattc
    13801 tcaaggaaga cttaatacaa acgataaaat caaaatcaat gaagctttag aatacatgga
    13861 acttagcaac ttaagaaatg aatttttaga tacattaagc ggcggacaaa aacaaagagt
    13921 ttttatagcc atgatcatcg ctcaggatac tgaatttata atgtttgatg aacctttgaa
    13981 caatcttgat atgaagcata gcgtacaaat catgcaacta atgaaaaatt tagtcaaaga
    14041 ctttaacaaa agtatagctg ttgtattaca tgatattaat tttgcttcga tttattctga
    14101 tgaaatcata gccttaaaag atgggaagct tttaaaacaa ggctcaaaag atgaaatcat
    14161 caatcaagaa aatttaaaac aaatttatga tatggatata cccgtaagtc aaattaatgg
    14221 taagaaaatt tgtatttatt tttaaaaagg agaaaatatg aaaaaatctt tagtttttgc
    14281 attttttgca ttttttttaa gtctaatctt aacagcttgt aattcaaact caaatgaaaa
    14341 caacgcaagt tctacaataa aaaccaacac tgctacggtg aaagttttgc ctattagtat
    14401 gagcgatgag ggtgatagtt ttttagtgaa ggatagtcta ggagaaaata aaatccctaa
    14461 aaatccttct aaggtagtga tcttagatct tggaatttta gatacttttg atgctttaaa
    14521 attaaatgat aaagtcgcgg gcgttcctgc taaaaattta ccaaaatacc tacaacaatt
    14581 taaaaacaaa cctagtgtag gtggagtaca acaagttgat tttgaagcca ttaatgcttt
    14641 aaaacctgat cttatcatca tttctggacg ccaaagtaaa ttttatgata agttaaaaga
    14701 aatagctcca actttatttg taggtcttga taatgcaaat tttttaagct cttttgaaaa
    14761 caatgtctta agcgttgcaa aactttatgg tttagaaaaa gaagctttgg aaaaaatttc
    14821 agatattaaa aatgaaattg aaaaagccaa aagtatagtt gatgaagata aaaaagctct
    14881 tatcattctt acaaattcta acaaaatttc agcctttggt cctcaatctc gctttgggat
    14941 tattcacgat gttttaggga ttaacgcagt agatgagaat ataaaagtag gcactcacgg
    15001 caaaagtatc aattctgaat ttatactaga aaaaaatcct gattatattt ttgttattga
    15061 tagaaatatc attgtaggca acaaagaacg cgctcaaggc atactcgata atgcacttgt
    15121 cgctaaaacc aaagcagcac aaaacaaaaa gatcatctat cttgatccag aatactggta
    15181 tttagcaagt ggaaatggac tagagtcttt aaaaactatg attttagaaa tcaaaaacgc
    15241 tgtaaaataa tataacttcg caagggctag tctcttgctt cgatacctaa taaaatactt
    15301 gggattttca agaaagtttt agtggcggac agagagggat ttgaaccctc gagacccgtt
    15361 aagatctgca cccttagcag gggtgtggtt tcagccactc acccatctgt ccaataaagt
    15421 aaagtatgat tatacaaaaa aataaataat acctagctta aaaagctagg aaaaatcaaa
    15481 ggctaagata agccaaaagc aaagttacaa caacccctac tccaagaact gcaaattgct
    15541 tacttctatc ttttttattt gcaaacaaag taatcataag ccctgaaata taaagcataa
    15601 ataaagtaat accaaagcct acactaagca cagaaaaata ccaagcaccc ttatctttat
    15661 gaagcataat catatcgcca agtaaagatc ttgtttttaa ggtaatattg tattcattag
    15721 tagatttttg agttatatta gcactataat gagttccacc tattgttata cctttatctt
    15781 tacttttaat tatatttgta ttagatggta cttttaaacc atttgttttt aaatactcta
    15841 ttaaagcttc tctttcttta ccactttcta taacttttga caattgatac tgctcaactt
    15901 ttaagcccac atcttgatta ataccaaaaa tatacgctat acccgttaaa gcaaaaagca
    15961 aagcacaagg caaaaagaac aaactaagat agatatgaac ctgtctaaac aatttatttt
    16021 tattgatcat tttaactcct ttttgattat caaaatttgt gatattttga caaaacaaag
    16081 tgaagcaaaa gtgaatttta aataaaaagt ttatattttt taaaacaaag aaaagaaaaa
    16141 gccctatgat tatagggctt aagaattatt ttttatcaat cacttgataa ttataaggag
    16201 caagctcttt atcatgctct aaaagttctt ttggaggatt gccattaaca tctttttcat
    16261 ctgcatagta acgctctcca gctttatgat tattaacatc tactttataa taaagctctc
    16321 ctggattaaa tttttgaata tcttcaaaac ctaaatttga agttttaaaa tctttaattc
    16381 catttgccgc tgcaatttct acaagtttag tttgtcccat tcttgccata tcaacagctt
    16441 gcaataacat tcttgaagct tcgcgaggat tatggaaacc agttgagttt tcagcattaa
    16501 caaaatccgc tctcatttga gctttacgat gaagttctaa aacttctttt agttcttcgc
    16561 taattttttt cgcatcagct tttccatcgc tttggaattt ttccatatta cctagttcat
    16621 cgcgtagttt tttagtatcc ataatcaaac taacaattgc atactctgca gttctttgat
    16681 catgcgcaac gctgttttgt atgtcaagca cttgagcttt taaataatct tcgctttgtt
    16741 tatgacaaga cttacaagca gagttaatat ctcttaaagg agaagtgata ttgtgttgag
    16801 taaccttttt agctccttct ctaacataag gcatatgaca atccacgcaa cttaccccat
    16861 ttgcagcatg cacaccgcca ctataaagtt cgctttctgg atgttgaatt ttaataattt
    16921 gtgcccctgt taatttatga gtaaaatcag ctccaaatac tccacgaact ttatcataat
    16981 aatcatctag catttcaatt ctaaatggct gtcctttttt ccactcactc caaggaaaag
    17041 ttaaaactat accatcggtt tcaatctctt tagctttatt accatctctc caaaattcat
    17101 actcatcata atttttctga gttccattcc accatttttt agaactatca tctacaatag
    17161 tttcacccat tacttttact ttttcccctg ttggtttaaa atagtattca acatggcatt
    17221 gagagcaaac taaagttctc atttcttctc ttgtagcttt tacgccttgc actggatctt
    17281 tttcatatcc tctagaaact aaagcattaa tagctgctgg acgagtaagt cttaaactca
    17341 tatcatttgg attgtgacaa tctgcacaag ttacacccat tcttttacca ccatgtggac
    17401 ctgcatgttc aggtgaattt tccactatac catcaacggc tgggatattt ttaatcatag
    17461 tccaataatt tgtagagtta aaagcagtaa aatctccttt agcaacattt tttataagcc
    17521 atggagtcca tccactatga caattcatac aagctgcggg ctggccttta aaagcagcaa
    17581 ggccgtgagc attaagaaaa tctttgttgt ttcttgctgt tttcatttga tctacttgaa
    17641 cccaaaaatg ccctctttct tcattgaaat caagactaaa aggatatcct gcccaaagta
    17701 tggttaattg aggaaagcga attaattttg aataagctaa attaccacca aattcagtag
    17761 ctttaggctc ttctttttca actgttaaat acatttttag ctgctctgga aaaaccttac
    17821 cccatttttc aaaatttgga tcatcatcac taagcaaaga aaaatcagca tttgctgcaa
    17881 tggcattttt atttgcttca tcttcttttt tttgattgat atcattattt agccataaaa
    17941 ctcccactat aagtaaaacc aaaacaacaa tacccaagcg taaaatattt tttttcattc
    18001 atcttctcct tattaaattc cgtgtttatg tccaacatct ttatgacaag aagcacaatt
    18061 taatgacttg tctgcatgtg gatttgttgt agcattgata gctgtttgag caaaatctgc
    18121 atgacagcgt atgcagtttt cttgcaccat ttttctgctt ttttcagtcg cactcaaatt
    18181 tgtaggcaac tcatcaagtt taaaagtaaa agcataagca tgtcctaaac cactttgcgc
    18241 tttagctatc cacttagcta caaaattatg tggcaaatga caatccacac aagttgctct
    18301 tggttcgcct ttgacttttt gagagtgtgg tcctgccatg tattcgttat aaacttcatt
    18361 cataatatgg cagttattac aagattcact tgcattgctt aaataagatg tgcccttagc
    18421 gttataaaaa gtataaaacc caaccgcaaa gaaaacaaaa agcaaaacaa gaaaaatagt
    18481 aaaaagattc gaagttttct tcaaaatttt cctccttaaa attatcattt cttaaaatct
    18541 tcaatgaaac aacaatgtca cagaatttcc cagaaataaa ttttttaatt ttaacataga
    18601 tgaatttaat ataattttaa agatatattt actcttaatt aacctaaaaa atttaaaact
    18661 tttattcaat aatttcaaaa taaatgataa aatacaacta aaaaaggaaa aattaatgca
    18721 aacaagtcct gatatgttta tcaatcgcga actttcttgg cttcgcttta attctcgtgt
    18781 tttagaccaa tgttctaaaa atttaccctt gttagaaaaa ttaaaattta tagctatata
    18841 ttgcactaat ttagatgaat tttatatgat acgcgtcgca ggcttaaaac aacttttttc
    18901 agctggagtt aatgcaagca gtagcgatga aatgacaccg ttgcaacaat taaaagccat
    18961 acgcaaatac ttacaccaag aaaaagagct tttggagcgt tattttaatg aaatcacaag
    19021 tgaattagaa aaagaaaatc ttttcataaa acattatgaa aatttagatg aaaatttaaa
    19081 acaaaaatgt gatgagtatt ttttctccaa tatttttcct gttattgttc caatagctgt
    19141 tgatgctact cacccctttc cgcatttaaa caacttatct ttttcactag cggttaaaat
    19201 ttgcgataaa gcgcatcctg aacttgtaaa atttggaatg attagaattc cgagagtttt
    19261 acctcgtttt tatgaagtaa gtgcaaatat ttatgttcct atagaaagta tagtccatca
    19321 acacgcagaa gaaatttttc caggctataa actcttagct tcagcagcat ttagagtgac
    19381 tagaaatgca gatatggtaa tagaagagga agaagctgat gattttatga tgattttaga
    19441 acaaggctta aaacttcgca gaaaaggagc ttttgtaaga ttgcaaattc aaaaagatgc
    19501 agatgagcaa atcgtagaat ttcttaatac tcacatgaaa atttttcata aagatgttta
    19561 tgaatattct attttactca atctccctag cctttggcaa atcgcaggaa ataaaacctt
    19621 tacgcatctt ttaagcccac tttacacgcc taaaacttta ccaccttttg atgaaaattt
    19681 atctattttt gacgctgtag aaaaagaaga tatactcatc atacaacctt ttgaaagttt
    19741 tgatccagtt tataaattta tcaaagaagc aagcaaagat cctgaagtaa tttccataag
    19801 aatgacactt tatagagtcg aaaaaaattc caatatagtt caagctttaa ttgatgctgc
    19861 aagtgatgga aaacaagtaa ctgtgatggt agaattaaaa gcacgctttg atgaagaaaa
    19921 taatcttcat tgggcgaaag ctttagaaaa tgccggagct catgttattt atggcattac
    19981 aggttttaaa gtccacgcta aggtttctca agtcatacgc aaacaaggag ataaacttaa
    20041 attttatatg catttaagta cgggaaatta taatgcaagc agtgctaaaa tctatactga
    20101 tgtgagttat tttacaagca aagcagaatt tgcaagagat acgacaagct tttttcacat
    20161 cttatcgggc tttagtaaaa atcgtcgcct tcaaactctt tcaatgagcc caaatcaaat
    20221 caaagaaaaa gttttagaaa tgatacgcat tgaaacaagc aagaaaaatg aaggtgtcat
    20281 tgtagctaaa atgaattctc ttgtggatag tgatatcata caagcgcttt atgaagcaag
    20341 tatggaagga gtgcaaatcg atcttatcat acgcggaatt tgttgcttaa aacctgatga
    20401 agaatacagc aaaaacatac gcgttagaag catcatagga aaatacttag aacatgctag
    20461 agtattttat tttaaacata gtgagccaaa ttattttata tcgagtgcag attggatgcc
    20521 aagaaattta gaacgccgtt tagaacttat gactcctata tatgatgaaa gaagcaaagc
    20581 taaattagct caatttttac gcttgcaact tagtgataat gttttagctt ataagcttaa
    20641 aaataatgga gaatatgaaa aaattccttc ttctgaaaaa atcatagatt ctcaacaaac
    20701 cttagaagaa tatgtaagta aaatttataa aacacttaaa aaagatacag atcaaagtcg
    20761 tgcaacgcac ttagcttcca aacttttcaa agaaaactaa aagtttttag ggttttttac
    20821 tctaaagact tatttacttg tttgttataa aaaagggctt taagataaag ccctaggaga
    20881 tttcccatag aaataaacaa ttatttctaa actataaaaa gatttagaaa tgatttttaa
    20941 gattaaattt tatacttaag tcctacttga ccacttaagt aagtttcatt tttattatct
    21001 actttacctg ctagtatttg tttagcacca aagccaagat tcatactgag ttgatttgta
    21061 aaatctacat taccccctac gataatttgt ccgtatgttt ttttcttgtt gttagcttct
    21121 acactagtaa agaaagcatt atttacagct aggttagctg tgtaatcatc accactattg
    21181 ataacaaatt gttctatttt tggagttaca aaaatataag agttttcatt catatatttt
    21241 ctaaattcag cacccacttc aatacttaca gaattgtttt tcatagaatc aatatcttta
    21301 gcaatagcac cattttctgt atgagatgga gtataactga aataataatt tactcccgca
    21361 aaaggtttaa taaataaagt attatcacta aagtcaaaca cacgacctgc attagcacta
    21421 agtcctaaga atttacttgt ataatctgag ttatatgcac catctattta aacattgtct
    21481 tgtttagttg gagaaacttg agcataagct ttaagattaa gttcccattg tggagctata
    21541 ttgatagtag aatacatacc taattggaag ttatcgcttt tttgttctaa attattgtct
    21601 ttgattttag catttgcata agtaaaataa gcaccccata aaacatcatc attagcttgt
    21661 ttatctacac ctatagtagc accatgcatt gcaccactat ccccatcgat aatgttagca
    21721 ccaccaaaag cattagccca aacactattg gtatattcat ttacatagct tggtctcata
    21781 tcactatcta aagcagcaaa tttaagacca ttcattttag aagcataagt tccaaaagga
    21841 ttgtttagca ttgctacacg agaacctata gaaacatcat tagaaatatt catagtggta
    21901 tttactgcac tagaagctga attgagatta gatacagatt tacctgtatt gtctgtgtct
    21961 tttttgatat ctaaagctag ttttacacct tctctacttg ctaaatctgc tcctatactt
    22021 cctaattgtt ctgtgataga acgaagtgct aggatagaag ctttatcatt agtactaaga
    22081 tttaaatttg aatttttatt tactaaatca atgtattttt catcatcgat tttaccgcca
    22141 tttttctcag cttcttctaa cattgtttga agttcagttt tttgtttttc aagagcttct
    22201 tttgcttgtt tccattcttc atcttgacta gaatcaaatt catttttaag caatttatcg
    22261 atagtatcta tatctacttg aagttgaact agcttatttt tagctgctgc agtagcacct
    22321 ccattgatta ctaagcattt attgccaccg cagttttgaa cgctaagttt ataatctact
    22381 aaacctccgc tatatttgtc atcagtgata tccagtacag ttcctgcttc caaaggatct
    22441 ttgccttgaa cactggttga gatataatca cttgcgaatt ttaaaagtaa tgcacctgcg
    22501 ttattatttg cttttaaaat atcttcattg aaatctttag cttgaactat tactacatta
    22561 tttgcttcta agtctgtata agagcgcttc ataagtccaa aatttgaatt tttaagattt
    22621 gcagttccat ttaccttaac aaaatttcca taagtagcaa aaagcgtttt atcggcagta
    22681 aaatttccat ttatagttaa gctaccatta gcactttttc cttcaactgc tccattataa
    22741 agaattatac ctgaactttt ttttcatcct cggtaatagc ttcacctcct gagctagtca
    22801 tagttaaatt tccattaatc accgaagatg caaaagcttg taaaactata tctgttgttt
    22861 taacctcttt agcagtagcg tttagatttg ttacataagc aggattttct ttattgttat
    22921 gtgtaaagct taaagtattg tctttaccga tatcaagtta aatcgataat cagcgctatc
    22981 ataatcatcg tttggtaaat cccaaacacc cattttgata cttaaatctt ttcctttgta
    23041 atcatcagga tttttaagat tgatatcctt accattttct tcaaaataat ttcccacatc
    23101 tgaagaccct gtaagattga tttcttcagc aaaagcactc gaataaagca aagttgctac
    23161 acctaagctt agcaatatct tgctcgaagc atttttcttc ataagtttct ccttcaataa
    23221 atttaaactg aaggaataat tatacccccc ccctaaaaat aagcttaaaa ataaaactat
    23281 aaatttttaa tgaaaaatta taaaacctaa tatatcaaag ttttaagggt aataaatcgt
    23341 tcttaacttc atataaaaaa ttctaaaaat ttgaaataaa cttatgattt acttaaaatt
    23401 agcgtgatgg tggaagcgag gggaatcgaa cccctgtcca aaaataatcc cacaaagacc
    23461 tctacatgct tagcaaagat gactacttca ccctacttcg ctcatcttcc aaaactcaaa
    23521 agcaaggcta agaccttatt tcacctcaac gcttgtcaaa cgcaaggcta cactatcaaa
    23581 aatgaccgaa aattaagcta gatagtatga cttaaatttc aggctcaact gaacttacgc
    23641 agctttagcg taagcaggag cgaatttaac gttgtttgcg tttaatttta tttgggcttt
    23701 ttacgctttg cccaaagcga catgccatct aagcagactt actcctgtcg aagccaagtc
    23761 gctcccttat ttagaaataa tatttggaac attaacaatt aaaggattaa aaaccgctaa
    23821 aacagaatca tcattttcat acgaacgaca atatttttca aattgatcac tcatcaaaag
    23881 catccaatcc gtaaattcat cactagcagg cccgttaaag cgatttgctt gcgccatcat
    23941 ctcttcacaa aatacacaaa aatcagtcac ttcttcaaga tttaaacgtc ttgctgccca
    24001 agcggtattg tgtgctaaag tttcaagctc ttttatggct tctttataac gcacgctatc
    24061 gcttccaagc ttgatgatta aaggttcaaa cctatcgcac atggttctaa aaaattgtaa
    24121 aaatttttct atatcgtcaa tttcataatc taattctaat tttgttaaaa ttcccatttt
    24181 taaaccataa tcattaaagt ttaatgtaaa ttctagcaaa ttttagctaa aatcttattt
    24241 taatttttcc aaaatataag caaagatatg gatagaatag tagaaataga aaaatactcc
    24301 tttgatgaaa cttacgaaac ttcgttgcgt ccttcaaatt ttgatggtta tataggtcaa
    24361 gaaagcatta aaaaaaattt aaatgtcttt atagctgcag ctaaaaaacg caacgaatgt
    24421 ttagatcata tactttttag cggtcctgca ggacttggaa aaacaacact agccaatatc
    24481 atctcctatg aaatgggtgc aaatatcaaa acaaccgccg ctcctatgat agaaaaaagc
    24541 ggagatttag ccgctatttt aactaatctt agcgaagggg atatactttt tatcgatgaa
    24601 attcaccgct taagccctgc tatcgaagaa gtactttacc ctgcaatgga ggattaccgc
    24661 cttgatatta tcataggtag tggcccagct gctcaaacca taaaaatcga tttaccaaaa
    24721 tttactctta taggggctac aactcgtgca ggtatgctta gcaatccttt gcgcgatcgt
    24781 tttggtatgc aatttagatt agaattttac aaagatagcg aacttgccct aatcttgcaa
    24841 aaagcagctt taaaacttaa taaaacttgc gaagaaaaag ccgcacttga gatcgctaaa
    24901 agaagtcgtt caacccctag aatagctcta aggcttttaa aaagggtaag agattttgcc
    24961 gatgttaatg atgaagaaat tatcacagaa aaaagagcta atgaggcctt aaattcttta
    25021 ggagttaatg agcttggttt tgatgcgatg gatttaagat atcttgaact tttaaccgct
    25081 gctaagcaaa aacctatcgg acttgcaagc attgctgcgg ctttaagtga agatgaaaat
    25141 accatagaag atgtaatcga gccttattta ttagctaatg gctatataga acgcactgca
    25201 aaagggcgta tagcaagcac gaaaagctat agtgctttaa aattaaacta tgaaaaaact
    25261 ttatttgagg agtaaatttt gcaaaatgga aaattctttc ttataagctt tattttagtc
    25321 attttatttc ttttgcttta cctttttaaa ggttttttac ttgtaattat catagctagt
    25381 ttaatggcgg tagctacctc aaatatcaat gcgaaatttt taaatcttac taaagggcat
    25441 aaatttttag cttccattct tacaacaact tgtatggttt tgcttttctt tgcacctttt
    25501 gtttatgcta tgatagaact tgccaaagct ttaaagaatt ttgatattaa tttagttaca
    25561 caaacacttg attatgtcaa aaactatcaa tttaccttgc ccgaaagctt taatttttta
    25621 gaacctaaaa tcaaagaatt tttagcttct atagatttaa atagcatttc taaacaaatt
    25681 ctaagttatg cttcaagttt tacaaaatca ggagctaaat ttcttataga tatggtttta
    25741 atttgtgtgt tttatttctt tgcaaatcta tatggaacag aacttgttat ctatcttaaa
    25801 tctatcattc ctattgataa aaaagaactc gatgatgttt taagcgaagt gggtaatgtt
    25861 atggctgttg tgctttactc tatggtaatt gtagcaatat ttcaaggtgc actttttggt
    25921 ttaatcacaa tgttttatgg ttatgatgga attttaatgg gagtaatttt tgctgtaagt
    25981 tctctcatac ctgctatagg aggagcttta atttatgtgc ctgtaagtct ttatgaattt
    26041 gcctcaaaca atcttaactc agctcttgtt atttttattt attctgtaat tgtaatttct
    26101 tttatagcag atactttaat caaaccttta atcatcaaat ggatcaacaa aaaacttgta
    26161 aaaactccca ctaaaatcaa cgaactttta attttcttgg ccatgatagc aggaatttca
    26221 acctttggtt tttggggtat tatactaggt cctgcgattt taactttttt tgtatcaact
    26281 ttaagaatgt atgtgatttt aaaagataag aatttaattt aacttgcctt aaaaaaggca
    26341 agttttatgt tctaggcttt tgagcctatc attttagtag gatcaacaaa tttattgaaa
    26401 tcttcttcac taaccaaacc aagctccatt gcgctttctt ttaaagaaat acctttttta
    26461 tgagcatttt tggccacttt agcagcgttt tcataaccta tgtgtggatt tagagcggta
    26521 actagcatta aagaattatg aagattatga tcgattttta cacgatttgg ttctatgcct
    26581 acagcacaat ggatattgaa tgaatgcata gaatcagcca acaaatcaag actttgcaag
    26641 aaattataaa taatcacagg cttaaacaca ttaagttcaa aatttccttg acttgctgca
    26701 aatccgatag ctgcatcatt tcccatcact tgtacagcaa ccatagtaac agcttcacac
    26761 tgggtaggat ttaccttacc tggcataatc gaacttcctg gctcattttc aggaatgata
    26821 agctcaccaa gaccacatct tggacccgaa gctaaccatc ttatatcatt tgcaattttc
    26881 attaaatttg cagccaaacc tttcatagct ccatgagtaa aattaatcgc atcatgactt
    26941 gttaaagcat gaaatttatt tggacttgaa ataaattttg tacctataag ttgagttagc
    27001 tcttcgctta ctttttggct taattctgga tgtgcattaa gccctgttcc cactgcggtt
    27061 cctcctatgg caagttctct taaagttggt aaagaagcga tgatttgctc ttttgaatgt
    27121 aaaagcatag aaagatatcc actaaattct tgcgctagag taagtggagt agcatcttgt
    27181 aaatgcgtgc gtcctatctt gataatacca tcaaattctt ttactttttt ttcaaaagtt
    27241 gcaataagct catcaagcgc agggataagc tttttctcta cttgctcaac cgcaacgata
    27301 ctcatagctg ttggaaaagt atcatttgaa ctttgactca tattaacatg atcatttgga
    27361 tgtacaagct tttctttgcg aaaatccccg cccatgattt cagtggcacg atttgcaata
    27421 acttcattca tattcatatt gctttgtgtg cctgaacctg tttgccaaat cgcaagtgga
    27481 aaattatcat caaatttacc tgcgataatc tcatcgcaag cttgaactat agcatttttc
    27541 ttagcatcat caagtttgcc aagtttgtta ttgaccaaag ctaaagattt tttaagattt
    27601 gcaaaagcat agattaaaac ctttggcatt ttctcacaac cgattttgaa attttcaaaa
    27661 cttctttcag tttgagctcc ccaatatttg tcatttggaa ccttaacttc acccatggta
    27721 tcatgttcaa ctctgtattc cataattttt tcctttgatt aaaattttat ttattataag
    27781 ctaaaaaaat aaatactttc aaaaacgttt tcccactgaa ctcattaaat gcaattcata
    27841 ggcattatga gaaaatctat tcattaacat aaactgccaa aatacattgt ttttatataa
    27901 aaattctgaa ttaaaacctt gacttaaaat attatctttt aatttatatt tttgaataaa
    27961 agcaatagga aaatcaacaa aactagcctt attttctaaa gttcttccat aaattctttt
    28021 ttcaaaaatt acaaaagtag aaaaagaagc ttgataatca tcttgctcta tatttttagc
    28081 aagattaaaa cctaaatttg catttatgct atgatgtttt aaactttcat aatttttagc
    28141 aaaaggactt ttattttctt taaaatcttc ttgataaaaa aaactatgtg taaaatacat
    28201 taaaggatta aaaataaaat cttgacctaa aataatatct ttagttacac caagctgggc
    28261 tgaagtttgc aatgttttat atttgccttc aattggctgc tctactacaa aacgattaag
    28321 agtattaaat cctacaccta tacctaatcc acttaatatt tttataaaat ctaaatcatg
    28381 gttataatta agcaataaat ccatgttata actcttcaaa tcactaccat tattaaaatt
    28441 aaatttagcg ctagaaagag ataaagcata agctaaaaag cctgatgaga aattttctcc
    28501 taaagagata ttagcacctg ttttttgacc tgaaaaatct ttatctttat agtatttata
    28561 acttggagta agatgccaaa aatattcttc attgctaaaa attctaggta aataagtact
    28621 agcaagtaag atattattgt tttgtgcaaa attattaata ttaagaggat gaagggtaaa
    28681 taacat
//
LOCUS       DARGEY010000008        28048 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.008, whole genome shotgun sequence.
ACCESSION   DARGEY010000008 DARGEY010000000
VERSION     DARGEY010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 28048)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28048)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28048
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.008"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..339
                     /locus_tag="SF008_000353"
     CDS             <1..339
                     /locus_tag="SF008_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232660.1"
                     /translation="LNLKNKKEQILSTFFHEFRHFYIDKNNSKEIKNQHTESIFKLIY
                     SNGYFKFENVVMFWAYDKKCIISNNYTDCVGVKPYKYSIFSDKPAIYWFSPSERDARI
                     STFYFEKYRG"
     gene            320..1603
                     /locus_tag="SF008_000354"
     CDS             320..1603
                     /locus_tag="SF008_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232661.1"
                     /translation="MKNIEVDMLEVAIKNIFKHKDFLQTRKEPYAIYLAINTNIKSYN
                     NICPSEKYFWKFNDMNELECYNPKFGIYLGKIVFDKKGNKLIPKYIPAKFENLEEEVK
                     KIKNPLWLANKNPNYIKPKFYDGMGGGYYFESPNNLEYQCKIEKDTQILSQEQIISYV
                     KELYSKNTMIIKNYIDAINKNHGIKPFVFSDEIYDQLGEVGILTKEQANNFKDKSYIK
                     KNPILLAMLDYLAKQNKKDEDYLITFDDEYFYAYLVWSLKDFLLELSYGLFQDETKLL
                     FNPAAYMDDTKIYYKNLNEEINKRYEKILLDMGFEGENGYFNDYYDYSFGNNGIFKFN
                     IYDYFAYDEIGVQPIQQSPYVSPRSPFDSPNFVYSDGNYHGDAKLIPSALGKYYFELS
                     YQKGVYIELLRPYYPSIKDLPEGWDNKMLEKANLK"
     gene            complement(2673..3122)
                     /locus_tag="SF008_000355"
     CDS             complement(2673..3122)
                     /locus_tag="SF008_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232662.1"
                     /translation="MVIFCAALALLLFLGVIAYLIISDGKKTIKKQKTSQKQHVAEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKTSKELDEAAKKKLEFVSA
                     LAANINASAQTVSYLNKELKKISGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(3138..6383)
                     /gene="ccsA"
                     /locus_tag="SF008_000356"
     CDS             complement(3138..6383)
                     /gene="ccsA"
                     /locus_tag="SF008_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HEG8232663.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWAMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSDPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEINDISFV
                     VKAASLHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTFGEPQNWKNSLLLHFK
                     DFALSNKNKNLELTGSNALKLELSYKNESKEFYIFEYNKPIMIELADQKFFISWALSY
                     EQLPFDIYLRDFVLDRYPGSMSPASYASEITVKNNNENFDYRIFMNNVLDYDGYRFYQ
                     SSYDQDEKGTVLSVNKDPGKIPTYIGYFLLCLGMFMNFLNPHSRFRTLARLINKDTLK
                     HTSVIIFILLLSFGSEKTFAQDLNSTLPVVNTNHAKALATLIVQKSADGRMVPFDTLS
                     REILEKIHQSDSYKGQNSNAVMLSMLVDVDKWQMEPFILMPQNQAVRDAVANILEIPS
                     AKYISYKDFFDENNRYKLQKYVENANRKNPNARGVFDKEIIKLDERANVVNLVFSGEL
                     FKFIPVQNNPNNVWFAPFSAVTTLKGDEGHIVLALIQNYFSAVENAFKDGNWIRADEG
                     LKFIKEYQEKIGYKVMPSKTKVEMEIFSNKAEIFVKLAPVYLIAGFLLLILVFSKMVV
                     PNLKISFIFKVVYVLNVLAFVIHTVGLGLRAYLSGHAPWSNGYESMVYIAWALSLSGI
                     FFSRKSPIALSLTSILSGVVLMVAHLSEMNPQITNLVPVLNSYWLSIHVSVITASYGF
                     LGLCALLGIFTLFLMCFLKKDGKYNLNILRNITEATRINEMAMIFGLCLLTVGNFLGA
                     IWANESWGRYWSWDSKETWALVSILVYAAILHLRMIPKYCNQFVFALWSMFAYWVIIM
                     TYFGVNYFLTGLHSYAAGEAAQIPNYVYWGFALMVVLAFFARRKRNFVGKL"
     gene            complement(6401..7096)
                     /locus_tag="SF008_000357"
     CDS             complement(6401..7096)
                     /locus_tag="SF008_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8232664.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            complement(7083..7853)
                     /locus_tag="SF008_000358"
     CDS             complement(7083..7853)
                     /locus_tag="SF008_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8232665.1"
                     /translation="MILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFAYEKATSLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAELIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVIAAYLGDFDANS"
     gene            complement(7850..8902)
                     /locus_tag="SF008_000359"
     CDS             complement(7850..8902)
                     /locus_tag="SF008_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEG8232666.1"
                     /translation="MMVRIKVSHLIFLIASIIFIFISPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGVTGQFSLEPNGFVAIGAYAAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIVAGICSSLLALILAFAVFRVRGDYLAIVTLGFGIIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLNLDIQSTPGLRMVVFSIVLILVMLFARKGIMGYCEL
                     SDVIRGIKKRFKRSKK"
     gene            complement(8902..9798)
                     /locus_tag="SF008_000360"
     CDS             complement(8902..9798)
                     /locus_tag="SF008_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEG8232667.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFLGALSLAMIFAACVGIATDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNMLFTSTPRTFTPPSYFEESVNFGGVITTYSSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            complement(9817..10926)
                     /locus_tag="SF008_000361"
     CDS             complement(9817..10926)
                     /locus_tag="SF008_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8232668.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSALSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNATRSVVVKEIKNQKQNYKDIINP"
     gene            complement(10948..12063)
                     /locus_tag="SF008_000362"
     CDS             complement(10948..12063)
                     /locus_tag="SF008_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8232669.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDSFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLAAGDGVNNQTFIDLGGSAVNGVIFTDSFDYNNPSTQ
                     LGKDFVAAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVGNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQNQKQNYKTIINP"
     gene            complement(12094..12528)
                     /locus_tag="SF008_000363"
     CDS             complement(12094..12528)
                     /locus_tag="SF008_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8232670.1"
                     /translation="MIARWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPAQKTKHNIFLK"
     gene            complement(12537..12728)
                     /locus_tag="SF008_000364"
     CDS             complement(12537..12728)
                     /locus_tag="SF008_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HEG8232671.1"
                     /translation="MKKIFLIGMILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKK
                     YNKKTHRYQNKTQTEITIK"
     gene            complement(12781..13287)
                     /locus_tag="SF008_000365"
     CDS             complement(12781..13287)
                     /locus_tag="SF008_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HEG8232672.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            complement(13296..14327)
                     /locus_tag="SF008_000366"
     CDS             complement(13296..14327)
                     /locus_tag="SF008_000366"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEG8232673.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGGSVSEKYAKFAVESGAIVIDNTSHF
                     RMEKDVPLVVPECNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFEPQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMVNETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILEKAPSVI
                     VIDDPKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            complement(14327..15628)
                     /gene="flgR"
                     /locus_tag="SF008_000367"
     CDS             complement(14327..15628)
                     /gene="flgR"
                     /locus_tag="SF008_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HEG8232674.1"
                     /translation="MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDEN
                     TDLIITDINMPGIDGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDV
                     DTLVEAIKRAKIIREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDASV
                     MFFGESGVGKEVFSRYIHTHSKRSNKPFVAINMAAIPANLIESELFGFEKGAFTDANA
                     TKIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIISAT
                     NANLDEKIKNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLEDTCKEYDFKEK
                     QLSQEAKNALLEYNFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKNLE
                     KELICEVLLSVDYDKDQASQILGMDIKILNEKIKKYQIKDK"
     gene            complement(15685..16134)
                     /gene="flgQ"
                     /locus_tag="SF008_000368"
     CDS             complement(15685..16134)
                     /gene="flgQ"
                     /locus_tag="SF008_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HEG8232675.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDLKVLPRTSLGLIDDNMPKTIKFNFLNSHKDELSDCFI
                     GARISVKDIVNTDLLRAQSETYVKILPLRFTVEFGEQNAIIYYLKKK"
     gene            complement(16110..16625)
                     /gene="flgP"
                     /locus_tag="SF008_000369"
     CDS             complement(16110..16625)
                     /gene="flgP"
                     /locus_tag="SF008_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HEG8232676.1"
                     /translation="MKKIYFMLAIAGIFAGCVSSANSATKNSSANSTAPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDQNFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            complement(16694..19282)
                     /gene="gyrA"
                     /locus_tag="SF008_000370"
     CDS             complement(16694..19282)
                     /gene="gyrA"
                     /locus_tag="SF008_000370"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HEG8232677.1"
                     /translation="MENIFSKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKEKQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE
                     NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDL"
     gene            complement(19323..19898)
                     /locus_tag="SF008_000371"
     CDS             complement(19323..19898)
                     /locus_tag="SF008_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEG8232678.1"
                     /translation="MRCINCGAFALLCFCELCELELSEFSLNVRKLDNNFKVYSFYKY
                     HEIQHLLHSKHYFYGYFVYKMLAKLSFAKFKDFFDPRMTINVIALDDKVEDMLYSHSA
                     ILARYLKTKFVKPVFNVLKAQNHIKYSGKSLEFRQKHKRNYKLLKTIHEPVILVDDIV
                     TTGSSLLEAKKVLEENKISVLFALVLADAKV"
     gene            complement(19895..20539)
                     /locus_tag="SF008_000372"
     CDS             complement(19895..20539)
                     /locus_tag="SF008_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232679.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPG
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            complement(20616..22412)
                     /gene="lepA"
                     /locus_tag="SF008_000373"
     CDS             complement(20616..22412)
                     /gene="lepA"
                     /locus_tag="SF008_000373"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEG8232680.1"
                     /translation="MSVKNIRNFSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMD
                     TMDIEKERGITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLV
                     VDASQGVEAQTIANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAI
                     CVSAKTGVGIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSI
                     AKNDEVLVMSTDKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTI
                     TLVKNKAKEAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSL
                     ALGFGFRVGFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGEFIKIQNPSEL
                     PPVNKIDHIKEPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPL
                     NEIVMDFYDKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQ
                     SKGRELVSAMKEIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRK
                     LLEKQKEGKKRMKAIGKVNLPQEAFLSVLKID"
     gene            22539..23813
                     /gene="cmeD"
                     /locus_tag="SF008_000374"
     CDS             22539..23813
                     /gene="cmeD"
                     /locus_tag="SF008_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HEG8232681.1"
                     /translation="MFKKYLKSAIFLALYPLAMLASNLHEFIALSQNNESYLIKQMQS
                     EQANLDKEQAFRNYLPSLSLSSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRVLESREKLSLLDKEQNKNYLALNAITLYFNTLSLEKILLANQQKVSFLKSTFERL
                     QKFYDAGLSPKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSDTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAP
                     FANLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNK
                     EELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEAKFKA
                     QSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
     gene            23810..24550
                     /gene="cmeE"
                     /locus_tag="SF008_000375"
     CDS             23810..24550
                     /gene="cmeE"
                     /locus_tag="SF008_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HEG8232682.1"
                     /translation="MKKILFLLLVFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLALDQESEKIALQNAQNSYQLALVEYENTKSRMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNRAKINIAYYKNIMAKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVRLGDDFFYKIDQNGTELKGKISLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            24553..27570
                     /gene="cmeF"
                     /locus_tag="SF008_000376"
     CDS             24553..27570
                     /gene="cmeF"
                     /locus_tag="SF008_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HEG8232683.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKINGDLNFVESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKLQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNELRKYNLNALDIANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLGK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKN
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFKFCFKLDSKLRKIYEREKLN"
     gene            complement(27594..>28048)
                     /locus_tag="SF008_000377"
     CDS             complement(27594..>28048)
                     /locus_tag="SF008_000377"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG8232684.1"
                     /translation="IYTYIRNYFQDHNIEYNEMTNILILEYKNENTLELFEAFADESE
                     HLKYCVNFEVDREEYKKFRQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDLSEIR
                     QKYLILVKLYHPDFHQGKSAIEKAYAREQFEKIQIAYDNLKALYKNNT"
BASE COUNT         9900 a         4951 c         3599 g         9598 t
ORIGIN      
        1 ttgaatttaa aaaacaaaaa agaacagata ttatcaactt tttttcacga atttagacat
       61 ttttatattg ataaaaataa ttctaaagaa ataaaaaatc aacatacaga aagcattttt
      121 aaactcatat attctaatgg atattttaaa tttgaaaatg ttgttatgtt ttgggcgtat
      181 gataaaaaat gcataattag taataattat acagattgtg tcggagttaa accttataaa
      241 tacagtatat tttcagataa gcctgcaatt tattggtttt ctccaagtga aagagatgcg
      301 agaataagca cattttattt tgaaaaatat agaggttgat atgttagaag tagccataaa
      361 gaatatattt aaacataaag atttcttaca aaccagaaaa gaaccttatg ctatttattt
      421 agccataaat acaaacataa aaagttataa taatatttgt cctagcgaga aatatttttg
      481 gaaatttaat gatatgaatg agcttgaatg ctataatcca aaatttggca tatatcttgg
      541 taaaattgtt tttgataaaa aaggcaacaa actcatccca aaatacatac ccgctaaatt
      601 tgaaaattta gaagaagaag ttaaaaagat aaaaaatcct ttatggcttg ctaataaaaa
      661 tcctaattat attaaaccta aattttatga tggtatgggt gggggttatt attttgaaag
      721 tccaaataat ttagagtatc aatgtaaaat agaaaaagac actcaaattt taagccaaga
      781 acaaatcatt tcctatgtga aagaacttta tagtaaaaac acaatgataa taaaaaatta
      841 tattgatgca atcaataaaa accatggcat aaaacctttc gtatttagtg atgaaattta
      901 tgatcaatta ggagaagttg gcattcttac aaaagaacaa gctaataatt ttaaagataa
      961 aagttatatt aaaaaaaatc caatattgct tgctatgctt gattatttag caaaacaaaa
     1021 taaaaaagat gaagattatt taatcacttt tgatgatgag tatttttatg cttatttggt
     1081 ttggagttta aaagatttct tattagagct ttcttatggt ttgtttcaag atgaaaccaa
     1141 gcttcttttt aatcctgcag cttatatgga tgacacaaaa atatattata aaaatttaaa
     1201 cgaagaaata aataagcgtt atgaaaaaat attgcttgat atgggatttg aaggagaaaa
     1261 tggttatttt aatgattatt atgattatag ctttggcaat aatggtattt ttaaatttaa
     1321 catatatgat tattttgctt atgatgaaat aggagtgcaa ccaattcaac aaagcccata
     1381 tgtttctcct agaagccctt ttgatagccc taattttgtc tattctgatg gaaattatca
     1441 cggagatgca aagcttatcc cttctgcttt aggaaagtat tattttgagc tttcctatca
     1501 gaaaggagtt tatatagaac ttttacgccc ttattatcca agtataaaag atttaccaga
     1561 aggttgggac aataaaatgc tagaaaaagc taatttaaaa taaatatgag catccgtgaa
     1621 taaacccttc tacaaactta aaagatttta tataccttgt ggtatgctta tagctttgat
     1681 tattttataa gcttaactta tcatttttta caacgacctt tagagcttat cttttgggat
     1741 agatatgata tatcgaaatt atctattaat aacgaagaga aaaattttaa aacaatgaaa
     1801 actgtgaatt actcctactt tcgctaacgc ttagaagtag gagcttccta actaaagcca
     1861 agtattctta gctagctcga aaggcttctt gtttatagct tacacctaaa ttttcatata
     1921 aaatattaaa acttatacaa aaatctttca taaattgttt cagaagttaa agagtttgtt
     1981 tggtaaatta cattaagggt ttaagccgca ggctgacccc ctacggctaa attgtgaaac
     2041 ccctgaaagg aggtaaactc aatgaggctc ataaaactca ttctagtggt tattatactg
     2101 ctttgtttat ttatagtcaa ggcatattaa ccaagcgcca ttttggggaa actagagtgg
     2161 gttacctgcg gtatcaaaca aacttttaac caagcttatc tcctttatat tgaattattt
     2221 tattttttaa tttatatttt tcttgcttat actaaaagat aagattcaat tataaacaaa
     2281 atgtattaag aagctaaaga gtttgtttgg tataattata aaaggtagat gccaaagggc
     2341 tgcaaccctt tagcgttaat ttaccgccca gaagggaggt gattaaattg ctaaacaaaa
     2401 ttatagtaat aattatacta ctttgtataa ttatagtcaa gtgttattaa tacttgattt
     2461 cccatttttt aaaggggagc tataattttc cctttggctt accaaacaaa cttttaacta
     2521 aacttctctt cttctattga ttttctatat ttgaaaaatt ttatttttta aaaagtatat
     2581 gttaaagtat atgttttttg tattattaat ttttcaagta tgttcttttg gttattttaa
     2641 ctataaatca cagtcctctt gagcgcacca tattatttat cttctttaat ttttctttta
     2701 gctaatccca tatgctcgta agcatcaatt tcttttttgt aagatccaga aattttctta
     2761 agttctttat ttaagtaact tactgtttgt gcacttgcat taatatttgc agccaaagca
     2821 gaaacaaatt ctagtttctt ttttgctgct tcatctaatt ctttagaagt ttttgaacca
     2881 agtttatgtg tctgcacata aagtttggca agttctttta attcaatatc cgttagttta
     2941 acatcggaag cagcaattat cattttatct aagtctgtat caaatttttt agtcttttca
     3001 gctacatgct gcttttggct agttttttgc tttttaattg tttttttgcc atcacttata
     3061 ataagataag caatcacgcc taaaaacaat aaaagcgcta aagcagcaca aaaaataacc
     3121 aaaaaaatat ggttcattta aagtttgccc acaaaatttc gcttccttct tgcaaaaaaa
     3181 gctaaaacca ccatcaatgc aaatccccaa taaacataat taggaatttg agccgcttcg
     3241 cctgcagcgt aagaatgaag tcctgttaaa aagtaattta ctccaaaata agtcataata
     3301 ataacccaat aagcaaacat actccataaa gcaaacacaa attgattaca atattttgga
     3361 atcattctaa gatgcaaaat tgctgcataa accaaaatgc taactaaagc ccaagtttcc
     3421 ttagaatccc aactccaata tctcccccaa ctttcatttg cccaaattgc tcctaaaaaa
     3481 tttcctacag taagcaaaca aagtccaaaa atcattgcca tttcattaat tcttgtagcc
     3541 tctgtaatat ttctcaaaat attaagatta tattttccat ctttcttaag aaaacacatt
     3601 aagaacaatg taaagatacc aagtaaggca caaagtccta aaaatccata actagcagta
     3661 ataacagata catgaatact aagccaataa gaattaagca caggaacaag atttgtaatt
     3721 tgcggattca tttcgcttaa atgcgcaacc attaatacaa caccagataa aatagaagtt
     3781 aatgacaagg ctataggact ttttctggag aaaaatatac ccgacaaaga caatgcccaa
     3841 gctatataca ccatactttc atagccatta ctccatggag catgacctga taaataagca
     3901 cgaagtccaa gacctactgt atgaattaca aaagctaaaa catttaaaac atataccact
     3961 ttaaatataa aagagatttt taaattcggt acgaccattt tagaaaaaac aagaatcaag
     4021 agtaaaaaac ccgcaattaa atatacagga gcgagtttaa cgaaaatttc agccttatta
     4081 gaaaaaattt ccatttcaac cttggtttta ctaggcatga ctttatatcc tattttttct
     4141 tgatattctt tgataaattt caagccttca tcagctctaa tccaattacc atctttaaaa
     4201 gcattttcca cggcactaaa ataattctgt attaaagcca aaacaatatg cccttcatcc
     4261 cccttaagag tagttacagc agaaaaaggt gcaaaccaaa cattatttgg attattttga
     4321 acaggaataa atttaaataa ttcaccacta aaaactaaat ttacaacatt agctctttca
     4381 tctagtttta taatttcctt atcaaaaact cctcttgcat ttgggttttt acgatttgca
     4441 ttttcaacat atttttgaag tttatatcgg ttattctcat caaagaaatc tttataagaa
     4501 atatatttag cactaggaat ttctaaaata tttgcaacag catcacgaac tgcttgattt
     4561 tgtggcatta aaataaaagg ttccatttgc catttatcta catcaacgag catggaaagc
     4621 ataacagcgt tagaattttg acccttatag ctatcacttt gatgaatttt ttctaaaatt
     4681 tctcttgata gcgtatcaaa aggcaccatt cttccatctg ctgatttttg aactattaaa
     4741 gtggcaagag ctttagcatg attagtattt accacaggta aggtcgaatt taaatcttga
     4801 gcaaaagtct tttcagaacc aaaagataac aataaaataa aaataatcac acttgtatgt
     4861 tttaaagtgt ctttattaat taatcttgcc aaagttctaa atctagaatg tggatttaaa
     4921 aaattcataa acattccaag acaaagcaga aaataaccta tataagttgg tattttgccc
     4981 ggatctttat ttacagataa aacagtccct ttttcatctt gatcataaga actttgataa
     5041 aatctatagc catcataatc taaaacatta ttcataaaaa ttctataatc aaaattttca
     5101 ttattatttt ttacggtaat ttcacttgca taagaagctg gagacataga acctggataa
     5161 cgatctaata caaaatctct taaataaata tcaaaaggca attgttcata agaaagcgcc
     5221 caagaaataa agaatttttg atctgcaagt tctatcataa taggtttatt atattcaaaa
     5281 atataaaatt ctttactttc atttttatag cttaattcta attttaaagc attagagcca
     5341 gttaattcta agtttttatt cttattgctt aaggcaaaat ctttaaaatg caataataaa
     5401 gaatttttcc aattttgagg ctcgccaaaa gtagaaatca acatagttct acccacttct
     5461 aaccaagcag atttaaacca taaccaaaaa ctttcatctt gaggtctatt ggagccttct
     5521 aaagcttctt gcgcatgcaa agaagcagct ttaactacaa agctgatatc attaatttca
     5581 tagagtcttc tttccttagc atttgccttt tctccaattt taaggtctaa attttgtcca
     5641 tctagcatac ttagaaaatg taagttttca cttgaactta aagttaaatt ttcatcaatt
     5701 tttacaaaag gtgctttaac attatcattc ataaaagcaa agttaacccc ttctatattc
     5761 ttaacttcac ctttttcaaa tttaacatca acaccttgag atcctttttg agaaagcatc
     5821 aaaaccaata aaggatcaga attattattt tctttataag tataatgagc atttaagatt
     5881 aaatctttat attttaatac agcttgatca tcacctaaat taagttttag tttaaaagaa
     5941 ttagcaaaag gcaaatttcc tatataacga tcattaaccg cactatagcg ttctccatct
     6001 tttatagcag aaatacgcaa agaagtctta gaactttcta taagtgaatt ttgagtatgc
     6061 tctctaatag gtaaaatacc ttcaaaacca gcatatcttg tcattgcaga acccactaaa
     6121 ataaataaaa aagaaatatg aaaaatcatt aaaggtaatt ttttaagccc aaacatttta
     6181 taacgaaaca tcccgcatag taaattaata ccaagtaaaa gttgtatata ttcaaaccaa
     6241 aaagtatcat aaaccattgc ccaagccgta ggagttccat aagcactttc aataaaagtt
     6301 gccaaagcac aaaaaagcgc aaaaagcaaa aacaatacaa ccgaaactct taaatcccct
     6361 atgcttttta ttatattttt cattcttttt cctttaaatt ttaaagccct aaatatttct
     6421 ttctaatctc atcatcacct attaaatttt tagcctcgtt ttccattaca atgcgaccat
     6481 tttccaaaac ataagcataa tcacttattt ttaatgcaga ataagcattt tgctctacca
     6541 aaagaatagt tataccctct tcttttaaac gcacaataat atcaaaaact tcacccacaa
     6601 tctttggagc aagtcccaaa gaaggctcat ccaacatcaa aagttttggt tcactcatta
     6661 aagcccttga aatcgcaagc atttgcgctt cccctccact caatgttcca gctaaagcat
     6721 gctttttact tgcaagtctt ggaaaaagtt tatacatttg ctctcttaaa tgctcataat
     6781 tttcagcatt attaaaagca cctattttta aattttcctc tacgcttaaa ttaataaaaa
     6841 cacgccttcc ttcaggaact aaagctatac ctttttgaac taaagtatga gttaaatgcc
     6901 ttttagtatc ataacctaag aaattaacct caccagttct tttaactgag tttaaaagcg
     6961 catttaaagt tgaagtttta cctgctccat ttgaacctat aagagaaaca atatgacctg
     7021 tttccacttt aaaatcaatc cctttaacag cttcaattaa tccataataa acatgcaaat
     7081 ctttaactat tagcatcaaa atcccctaaa tacgcagcaa ttacttcttt atgatttaca
     7141 gcatcgcaaa gtttaccttc aaaaattgtt tttccataat caagtaccaa tacgcgatca
     7201 cacaatttat ttacaaattt catatcatgt tctataagca aaacgctaat tttataatct
     7261 tttcgtaatt taaaaatgag ctcagcaagt tcatcactct cagagctatt catcccagcg
     7321 gctggctcat caagcaataa taatcttggt tgagtagcca ttgctcttgc aatctcaact
     7381 tttctttgtt gtccataact caagctagta gccttttcat aggcaaattc tgcaatacca
     7441 agttcttcta atattgcata agccttctct ttaaatactt gttctatttt tccaaaacgc
     7501 cctaaatgca aaaaggcttc aaaaatatta tatttcattt gtttattaaa accaataaga
     7561 acattttcaa gcacattcat gcttgaaaaa agcctaatat tttgaaatgt tctagctatt
     7621 cctaaatgca caatcttatg aggttttaag tgatcaattc tttctcctag aaattcaacc
     7681 gaacctgaac taggtttata gttacctgtt ataatattaa aaagagttgt tttgccagcc
     7741 ccattaggtc caattaaagc aaaaatttca ccctcattga ttttaaaaga agtttcatta
     7801 atagccttaa cactaccaaa actttttgaa atttgtttta attccaaaat cattttttgc
     7861 tccttttaaa acgcttttta atccctctaa tcacatcact caactcacaa taacccatta
     7921 tgccttttct tgcaaaaagc attactaaaa tcagaacaat agaaaaaaca accattctaa
     7981 gccctggcgt tgattggata tcaagattta aagaatctat ttttatattt aactcatcta
     8041 aaaatctaag ccactcactt ccaccaataa ccaatatcgc acctataata gcacctgtag
     8101 tagaaccaag tccacctaaa acaataataa tcaaaagctg aaaagtaagt aaaaaatcaa
     8161 attgagttgg agatacggta gtcaacagac aagctaaaag tccgccacct acaccttcta
     8221 aaaatgctga agtgctaaaa gctaaagttt ttatccaaaa agtatttatt cccatagcgc
     8281 ttgcagcatc ttcatcatct cttatagcct tcattgcacg accatattta gaataaacta
     8341 tatttaaaat taaaataacc gctacaatag caataccacc tgtccaatag atcgtggaaa
     8401 attgtggaat atctaccagc cctcttgagc cattagtaat agaaggaaaa ttaatagcag
     8461 ctattttaat aattattcca aagcctaaag ttacaatagc caaataatcc cctctcacgc
     8521 gaaatacagc aaaagccaaa atcagggcaa gtaaagatga acaaattcca gccacaatta
     8581 aagctagaat aaaggaattt gaatggatag ctaaaataaa agaactagga ccatctaaaa
     8641 aaaactgatc attttttgca tcagcactta aaagaactaa agcagccgca taagctccaa
     8701 tcgcaacaaa tccattgggt tctagtgaaa attgtccagt tacaccatta ataagattgt
     8761 aactcacagc caaaataata aaaatagcaa tttgattaac aatgtttaat ccataatccc
     8821 caaaaatata aggagaaatg aaaataaaaa taattgaagc aattaaaaag attaaatgtg
     8881 aaaccttaat tctaaccatc attaaaacct actcttttca aaatttatac ctaaaattcc
     8941 cgtaggccta aataacaata taaacaccaa aaaaataaaa gcaaatgcat ctttaaagcc
     9001 tgataaatct ggaaaaaaag ccacaacaac aacttcagta aatcctataa taagtccacc
     9061 caaaactgca cctactacag aacctatacc tcctaaaact gcagcagcaa aagcttttaa
     9121 acctattaaa gttcccatag taggttcaac agagtaataa tttgcagccc aaaaaacacc
     9181 cccaactgct gccaaagctg aacctagggc aaaaactata gcaataatac gatttgcatc
     9241 tatacccatt aaatttactg tttgtatatc aaatgccaaa gcacgaatag ctataccata
     9301 tttgctttta tacaaaatcc ataacactgc tattaaaata acaaatgtaa gagcaggaac
     9361 cattaaagaa ctataagttg ttatcactcc accaaaatta acactttcct caaaataact
     9421 tggcggtgta aaagttctag gtgttgaagt aaaaagcata ttaaaaagat tttgcaagaa
     9481 aaaactaata ccgattgctg taatcaacaa tgaaattcta ggagcctgtc ttaaaggttt
     9541 ataagcgatt ctatctgtag ctattccaac acaagcagca aaaatcattg ctaaagacaa
     9601 agctcctaga aaaggaacat ttagattagt catgcaaaaa agagccgcat aagcaccaac
     9661 catcataata tcgccgtgag caaaattaat aagtcttaac acgccataaa ccatagtata
     9721 gccaacagca ataagggcat acatactgcc taaactaagt ccattaacaa gttgttgtaa
     9781 aaataaagta gaatccataa tctttctatt tttcctttaa ggattgataa tatctttata
     9841 attttgcttc tgatttttaa tttctttaac cactacagaa cgagttgcat ttcctgtttg
     9901 atcaatactg ataacaccag aaacgccttg ataattttta gtttggtgaa ttttttcatt
     9961 gacacactta ctagtaagat tttcaacgca agcattcata gcatttagca ttacaaaata
    10021 cgcatcagca cccatagctg aaaaatttgg aacttctttt gttcccttag ctttttcata
    10081 aacactgata aattctttgc ttaattttgt agttggatta ttagcatcaa aactatctgt
    10141 gaaaatataa ccctcgcttg catctccagc taaactaata aaagtttgat cagcaactcc
    10201 atctgcagaa cccataggaa tatttaaacc tgcgagtttt gattgtcttg caaataaaga
    10261 agcttcacta taataaagcg gtaaaaaaat aaattctgga tttaaacttt taacttgagc
    10321 tacaatagct ctaaaatctt tatcacctga attaactctt aaaattctaa gaatttgacc
    10381 accattagac ttgtactgtt tttcaaaagc ttttgctaaa cctaaggaat agtcagtgct
    10441 ttgatctact acaataacag cacttttgta attaagtttt gaaaaaacat attttgctaa
    10501 agatgaacct tgaaaactat ccataaaaca tactcgagaa gaatatattt ttttatcaag
    10561 caatctatca ccagttgcag caggagcgat caatggaatt ttattatctt ctgctacgcg
    10621 cataacttgc aatgtattag cagtaaccat ttcccctata aggcctataa ctttatcttg
    10681 agaaactaaa cgatttgctc cactcgaaga ttctaattta tcacctttag tatcaataat
    10741 agcaagagaa accttatctc cattacttaa agctgattgc attgaatttg caagtttaat
    10801 cccttctagt gcgctttgtc catatgctgc agtagctccg ctaagcggta aaacaactcc
    10861 tattttgact tccgcagcac ttaaacttaa acttagaata cttgctaaaa ttaaactttt
    10921 tttcattctc tacctttatt ttagtaatta tggatttata attgttttat aattttgttt
    10981 ttgattttga atttctttaa tcacaacaga acgaatggca ttaccgcttt catctatgct
    11041 aatcacacca ccaacagctt gaaaatcttt agtttgatga attttgctat taatacattc
    11101 gctgctaaga ttaccaacgc aagcattcat agcatttaac attacaaaat acgcatcagc
    11161 ccccatagcc gaaaatgctg gaagttcttt tgttccttta actttctcat aagctgcaac
    11221 aaaatctttt cctaattgtg tagatggatt gttataatca aaactatcag tgaaaattac
    11281 tccattaaca gcacttccgc caagatctat aaaagtttga ttgttaacac catctcctgc
    11341 tgctaaaagt ttatcaaaac caatttgtct tgcttgtctc gcaattaaag cagcttcagg
    11401 atgataaata ggcatataaa caaaatcagg atttaaactc ttaagttgag aaaccacagc
    11461 tctaaaatct ttatctcctg aattaataac aagttttttt ataattttcc caccattatt
    11521 cttaaaagaa ttttcaaaag ctcttgccaa acctaaagaa taaacattgc tttgatctat
    11581 gatgataaca gcatttttaa gtcctaaatc cttagataca taagtagcaa atttatctcc
    11641 ttgaaaacta tctttaaaac aaactctact tgcatatttc tttttatcta gcaatttatc
    11701 tccagatgcc actggagcta ttaggggaat ttttttctct tctgctatag aaatagcttg
    11761 aatggtattt ggagttgtag cttcaccaat aatcccaagg actttatctg ttgctattaa
    11821 acgattaact ccatttgaag tttcaagctt atctcctttt gtatctattg tgataagttt
    11881 aataacatct ccatttgaaa gttttggctg tagcttatta gccagttcaa ttccgttaaa
    11941 aacatcttgc ccataagctg ccacagttcc agttaaaggt aaaactactc ctatattaat
    12001 atccttagca tataagcaat ttaccatagt taaaacactt aaagttaaag ttagtttttt
    12061 catagtattc cttttaatta tagtttttac attttatttt agaaatatat tatgttttgt
    12121 tttttgcgca ggttcttctt caagaagatc ttttacttgc aaatcaagcg caaaatttcc
    12181 acctttaata taagcaataa tattatctat atcctcgtgg cttaaatttc tagcataaaa
    12241 agccatttga gaagctgttg tagaactgct actatcaaga gtataaccta tcaaagctcc
    12301 tttaatatcc tcaggagaca tatcttttaa aattctagat cctataacac tcttttcagc
    12361 attatctcca tggcaagtat tgcatttatt ttgaaaatac aaagccttcg ctttttccat
    12421 atcatattgc ttatttgcat caaaggtata agtaaaaaat gatttcaagt taataccaaa
    12481 aagcgcaaca acaaatattg aactaataaa caaccagcgt gcaatcatga ttttccttat
    12541 tttattgtaa tttctgtttg tgttttattt tgatatctat gtgttttttt gttgtatttt
    12601 ttttcttttt taatatcata gcgataacga acagtccctg aaacttctat atctttaaag
    12661 acttcatcta acggagctgc aaaaacaaaa tgatttaaaa tcataccaat taaaaatatt
    12721 tttttcattt ttattcttta aacacaaaaa aacgattata tcaaaaaaag ataatccttg
    12781 ttaatgacca cctttgtgta aaaaataaag tcctacacaa agagctaaaa tcgatccagc
    12841 aagaaaagcc atatccacag gagtagcaaa tttcatctgt aaaacccttt gaaagaaatt
    12901 taccactaag accataatga taacttttgc aagcttgtct tttaattgat ctaagctatg
    12961 cacctctaaa accttgcttt gttttgtttg tttaaattct tctatttcgc tgataaaaag
    13021 ctcataaact ccaaaagaaa aaataaacaa aactaaagcc ataagataaa gatcaacagc
    13081 tcctataatt aaagccacca catcctcatg caaatccaca ttagaacctg catcaaaaaa
    13141 ataattataa gtataaaata taacttttaa aacatcataa cttgcaataa aaaacaatac
    13201 aaaagctcca attaaaccaa aaattacggg taaaattgta acaatacgac ttctaacaag
    13261 taaagattca aatattttct ctaacatttt tttccttatt tattttttaa ttctaaccat
    13321 ttttgcgcaa tacgcacagc atttgttgca gcacctacac gaatttgatc cgccacacac
    13381 caaagatgga gtattttttt atcatacaca tcagcacgaa ttcttcctac ataagtttca
    13441 ttagtatcgc tagtcattaa gggcataggg tattttttat ttttaggatc atctatgaca
    13501 ataacacttg gtgctttttc taaaatttct ttagcttttt ttacatctat ttctttttca
    13561 aaatgcatag taatggcttc gctatgactt cttaaaacag gcactcttac acaagttgcc
    13621 gaaacttcta aatttttatg taaaattttt tgagtttcat tgaccatttt aagttcttct
    13681 ttagtgtaat cattatccat aaaaacatca atttgtggaa taagattaag tgccaaagta
    13741 taaggaaaag tttgaggttc aaattcatca agtttaaaag caaaaaaact ttgcatggct
    13801 tcaaccaatt cttgcattcc ttcttttccc gctccacttg cagcctgata ggtacttaca
    13861 tcaacacgct ttaaattaaa tgcatcattt aaaggtttta aaacttgcac catttgtata
    13921 gtagaacaat ttggattagc aataatccct gtttttttcc aatctttaat atcctcagga
    13981 ttgcattcag gaaccaccaa aggaacatct ttttccattc taaaatgact tgtattatca
    14041 attacaatag cacctgattc tactgcaaat ttagcatatt tttcactcac acttccacct
    14101 gcgctaaaaa aagcaatatc aataggattt tctttaaata cattttcggt aagttctttg
    14161 actttataag ctttgccttt aaattctact tcactaccta cactttttgc acttgctaaa
    14221 ggtaaaatac tttccactgg gaaatcaagt tcatctaaaa catttaaaag ctcttcccca
    14281 accgcaccag tagcacccac aatggctatt ttttgttttt ttgacattac ttatccttta
    14341 tttgatattt tttaattttt tcatttaaaa tttttatatc catacctaaa atttgagaag
    14401 cttgatcctt gtcataatct acacttaaaa gaacttcaca aatcaattct ttttctaaat
    14461 tctttacatc tttttttata cttctagctt ctaagaacaa atcttcactt gaaatttcat
    14521 cattttcact taaaatacaa gctctttgta caacggatat taattctcta atattaccag
    14581 gaaaattata ttcaagtaaa gcatttttag cttcttgact gagctgtttt tccttaaaat
    14641 catattcttt acaagtatct tctaaaacct tttgagctat acctaaaatt tcttctttac
    14701 gctctcttaa aggcgggata ttaataggaa cagtgtttaa acgataatat aaatctgaac
    14761 gaaattcgcc attttttatt ttttcatcca aatttgcatt agttgcactg ataattctta
    14821 catctatttt gatgcttttt gtacttccaa gtcgcgtaat ttctttttct tgcaaagctc
    14881 ttaaaagttt ggcttgaatt tcataaggca tttcgccaat ttcatctaaa aataaagtgc
    14941 cctcattagc catttcaaaa agccctattt tagttgcatt agcatcagta aaagcacctt
    15001 tttcaaaacc aaaaagctca ctttcaatca aatttgcagg aatggctgcc atattaatag
    15061 caacaaaagg cttattagag cgtttagaat gagtgtgaat ataacgagaa aatacctctt
    15121 ttcctactcc actctctcca aaaaacatta cagaggcatc agttttagcc gctttttgac
    15181 ttaaatttaa tgttttttct aaattaggag aagttgaaaa aaaatcttta ttttcttctt
    15241 ttttttcatt ttttttgctt tttttatcgg ctgttttttc tcttatgatt ttagcacgct
    15301 taatagcctc gactaaagta tcaacatcaa aaggcttggt taaaaaatct tttactccca
    15361 aacgaaccgc ttctatagca cggcttaaag tagcatttcc tgtcataata ataaaatcat
    15421 atttattttc acaggcttta acaaattcta taccatcaat tcctggcata ttaatatctg
    15481 taataatcaa atctgtattc tcatctattt tttttaaagc ttcagtagca gatttataag
    15541 atttaatatt aaattcttca tactctgcta atgcaatttc taaggatttg cgcatattaa
    15601 tatcatcttc tactatgact aaattcatcc taagcctttt aaaaaatttc tactatagta
    15661 tccaatttgc gcttaatttt gaatttactt ttttttaaga taataaatta tcgcattttg
    15721 ttcgccaaat tccacggtaa aacgcaaggg taaaatttta acataagttt cactttgagc
    15781 acgtaataag tcagtattaa caatatcctt aacactgatt ctagccccta taaagcaatc
    15841 gcttaactca tctttatgag aatttaaaaa attaaattta attgtttttg gcatattatc
    15901 atcaatcaat cctaaagaag ttcgaggtaa aacttttaaa tcttgatcac tataagaaat
    15961 ttcacatacc cattgttctt caacattttc gctttgcgtc attgctaagg ataaattttg
    16021 attttgatga aagagaatga aatttttact agaaagctct gcccaaaaaa taaattcatc
    16081 ttgggcaaaa agcttaaagc taagaaagat taataagcaa acaattcttt ccacttgtct
    16141 gcatcgattt taagttctaa gtttacccta taaagccctt gattaaaatt ctgatcaata
    16201 atacttgcat tttttatcaa accatttact tgcgcagtaa tagttgaact tctaagcatt
    16261 gcatctttta cggtgtcttt accattcact ttcacaccat aaagcttact tgcaagctgt
    16321 ctgtaagcat ctgtaatcgc tgctcttttt gctaaagcta gggcttgagc agtagaaact
    16381 gtattcatcg gagcaatccc ttcaccaact gctgtaaaac taagttccgt ttcgctagca
    16441 tctggagcca acattttttc ttctctgata atatcacgca catcatcttt atcgactttt
    16501 tgcacgataa catcttgaga tggggcagtg ctatttgcac ttgaattttt agttgcactg
    16561 tttgcacttg atacacaacc agcgaaaatt cctgctattg ctagcataaa ataaattttt
    16621 ttcattttta caccttcaaa atattgtaat tagtaaaaaa taaaaagcaa taagcgttcc
    16681 aactttaaac ttattacaaa tctaaaccaa agttttcatc gcttaactca tcctcatcat
    16741 tttcctcttt aggacactta gcgatgctaa ccacctcgtc attttccaca ttaactacaa
    16801 tgacaccact cgtattacgc cctgcttttc taatgctttg catatcaaca cgtatcatct
    16861 tgcctgaact tgtaagagcc atcaaatcca tagtttcatc tactataact acgctaataa
    16921 gatctttggt tttttctgta agtttcatac aaattacacc cttaccacct ctgctttgca
    16981 atctatattc tccagcattt gtgcgttttc ctataccttt tgcacttatg cttaaaattt
    17041 cttgctcatc attttctata acaactgcac ctactaattc gtcatttttc tctttaaact
    17101 taatagccgt caccccacga cttacacggc cgatttcacg cactttagca agtgggaatt
    17161 tgatacacat accttttttg gttactgcaa agagcatttt accttgtgtg cttacacttt
    17221 cttcattttc aagattttca tcatctaaat tttcaatttc ttgattttct aaattttctt
    17281 caccaccagt ggcaaaaatt tcatcttcat ctctttgaac aataatagca gttaccaact
    17341 catcattttc atccaagttg atcgctctaa ctcccacact tctgatattt tgatattcac
    17401 tcaaatttgt acgctttaca ataccatttt tagtaaagaa acataaagat ttactctcat
    17461 caaaatccgt ggttggaata atagccatga ttttttcttc agcttgtaaa ttaataagat
    17521 ttaccactgc ttttccttta gccgttcttg agccttcagg aattttataa actttaagcc
    17581 aataaagctg tccacgatct gttacaaaca taagtgtatc atgtgtattt gccgtaaaga
    17641 aactttctat aaaatcatca tcataagtcg taacggctaa ttttcctttt ccgcctcgtt
    17701 tttgcttttc atattgttta ctaggcacac gcttaatata accacgatgc gtaatagtta
    17761 caaccatatt ttcattagga atcaaatctt caatatcaat atcatcataa tcatcttcaa
    17821 tttgagtaat acgtggcaca tcaaatttac ttctaatttc ttttaattca tcgcgaatta
    17881 aattttcaag caaggtttca ctttttaaaa tttcttcaag tcttgcaatt tctttcatta
    17941 attctgcaag ttcattttcg attttttctc tttcaagtcc tgttaaacga ccaagtttca
    18001 tatctaaaat agcattggct tgaagctcac taagaccaaa tttagctacc aaagaatctc
    18061 ttgcggtatt attatcagaa ctatttttaa ttaaagcaat cacttcatct atattatcaa
    18121 gtgcaatttt aagaccttct aaaatatgag ctcttgctct tgccttttga agttcaaaaa
    18181 tcgttcttct aataataact gtttttctat gggttaagaa aagatttaaa agttctaaca
    18241 aagagaaaat tttaggttct ttattgtgaa ttgccaacat aatcacacca aaagtacttt
    18301 ccatagtagt agatttaaat agattgttta aaacaatttc actcatagcc tcacgtttaa
    18361 gctctataac aacgcggatt ccttctttat tgctctcatc tcttacttca gatattcctt
    18421 caatttgctt ttctttaaca agctctgcaa tctgctctat aagcctagct ttattggttt
    18481 gataaggaag ctcatctata acaataacat ctttatttgt ctttttttca atatgagttt
    18541 tagcgcgcac tttcacgcga ccacgccctg tgcgataagc ttctataata ccttttttac
    18601 cataaattat tccacctgtt ggaaaatctg gacctttgat aaactgcata atctcttcta
    18661 agcttgcatc tttactatca agcaaatata aaagtccatc tatcaactca tttaaactat
    18721 gaggtgggat gtttgtcgcc atacctacag ctataccact tgaaccattt aataataaat
    18781 ttggaaccct agaaggtaag acatcaggtt cactttctga accatcataa tttggaacaa
    18841 aatcgaccgt atctttatct atatctttta aaagctcatg agaaagttta ctcatttttg
    18901 cttcagtata acgcatcgca gcagcgctat caccatctat agatccaaag ttgccttgtc
    18961 ctgtaatact tggatatctc atagaaaaat cttgagccat tctaaccaaa gcatcataaa
    19021 ctgctgtatc tccatgtgga tgataacgac ctataacagc acccactata cgggctgatt
    19081 tgacaaaatc tgttctactt tttgcctcat cattttgcat agcatataaa attcttctat
    19141 gaacaggctt taaaccatct cttgcgtcag gcaaagcacg acctataata acactcatag
    19201 aatagtctaa gtaactacct tttatagaat tttctatatc tacaagttca atatcagaat
    19261 ctttgctaaa aatattctcc ataaaaatcc ttctattagt tcaaagtttt gattatagca
    19321 tattaaactt ttgcatcagc taaaacaaga gcaaaaagta cagaaatttt attttcttct
    19381 aaaacttttt tagcttccaa aaggctagaa ccagtcgtta caatatcatc tactaaaatt
    19441 acaggttcgt gaatggtttt taagagtttg taatttcttt tatgtttttg acgaaattct
    19501 aaactttttc cagaatattt aatatgattt tgtgctttta aaacattaaa aacaggtttt
    19561 acaaattttg ttttaagata tctagctaaa atagcagaat gcgaataaag catatcttca
    19621 accttatcat ctaaagctat aacattaatt gtcattctag gatcaaaaaa atctttaaat
    19681 tttgcaaaac ttaatttagc aagcatttta taaacaaaat aaccataaaa ataatgttta
    19741 gagtgaagca agtgttgtat ttcatggtat ttataaaaag aatagacttt gaaattatta
    19801 tcaagctttc ttacatttaa ggaaaattca gaaagctcta gctcgcataa ttcacaaaag
    19861 caaagcagag caaaagctcc gcaatttata cacctcaaag ttcagagatt aaactagctg
    19921 ctttatttgc catttgtttt attaacaaat gagtataaaa agttgtttct tttaaatcat
    19981 caaaaccttg tacatcttgc ttggtacgga ttgtaaattt cttattttta tttatatcac
    20041 taacttgtaa aactcctact agttttgaat gtaatcctat agcatcttga gttgctccat
    20101 aagatataaa ttctaaatca atcttactca cataaggtga attttgatcg ttattgtcaa
    20161 gcacaactat tcctctagct tcaagttctt gttttaaata agtataaaat accgcattaa
    20221 aattcacatc aacaaataac tttttccctt tagcatttaa aaccttttgc ccttctttta
    20281 aatcataaaa tctatgtaaa taaacctttt tcaaagcaat accagtgtct aaagtgcgtt
    20341 tattggcaca acattgaatt ccaacatcgc taatatataa aagcccttta atctttgctt
    20401 caaaaccacc aggactttca caagaactgc attgagaatt tttagaaatt tgattaactt
    20461 gagcaaaagt atcttgttta gttgcacaag cactcaaaaa taaaataggc actataaaaa
    20521 tcaaaaattt tttaaacatt ttttctcctt agaaaattat tttaaaattg tattaaaaat
    20581 acaagcaaat ttcaagccaa gttttaaatt tatcatcaat ctatctttaa aacactcaaa
    20641 aaagcctctt gaggtaaatt taccttacct atagctttca ttcttttttt accttctttt
    20701 tgcttttcta aaagctttct ttttctagta atatccccac cataacattt tgctgtcaca
    20761 tttttaccca tggatttaac agtttctctt gcgatgattt tatttccaat acttgcttga
    20821 atggccactt caaaaagctg tctaggaact atttctttca tagcactaac aagttctctt
    20881 cctttacttt gcgctttttc attaggcacg ataatgctta gcgcatcaac attttcaccc
    20941 gctaccttaa tatcaagttt taccaaatcc cctactctaa attctatagg ctcataatca
    21001 aaactcgcat aaccttttgt taaggacttt aatttatcat aaaaatccat cacaatctca
    21061 tttaaaggca catcatattc tagcaaaaca cgctcaggtg tgatatagtc cattttaacc
    21121 tgtactcctc ttttgcgatt taaaagagtg attaaattcc ctaaaaattc acttggagta
    21181 atgatagtag ctttaacata aggctctttt atatgatcga ttttattaac aggaggaagc
    21241 tcgctaggat tttgaatttt aataaactct ccatcggttt gataaatttc ataagtcaca
    21301 gttggagctg tagcaatcaa atcaagatta aattctctct caagcctttc tttgataact
    21361 tccatatgta aaagccctaa aaatcctacc ctaaaaccaa agcctaaggc caaagaagtt
    21421 tcaggctcat aagtaataga actatcatta agctttaatt tatccaaagc atctcttaaa
    21481 tcttcaaatt tatccgtttc tataggataa agtcccgcaa atacaaaagc tttagccttt
    21541 tcaaaaccac ctatggcttc tttagctttg ttttttacca aagtgatggt atcgcctact
    21601 tgtacatcac ctacggtttt aagccctaaa accaccacac ctacttcgcc tgattgtaaa
    21661 gattgagttt taattggact taaagggtgg ggataaaaaa gatcttgaac tatatgtttt
    21721 ttatccgtac tcatgactaa aacttcatcg tttttagcaa tacttccttc ataaatccta
    21781 accaaagcca aagcacccaa ataattatca aaccaagaat cataaattaa agccttagta
    21841 ggagcttcat catctgtttt tggtgcaggg attttagtaa taattgtttc tataagctct
    21901 tttataccca ctcctgtttt tgcactcaca caaattgcat ctttgcaatc tatacctata
    21961 atatgctcga tttcatgctt tactttctca acatcagcat taggtaaatc gattttatta
    22021 atcacaggaa tgatttcaag attattttca agcgctatat aaacattagc tatagtctgt
    22081 gcttcaacac cttgagaagc atctactaca agcaaagctc cttcacaact tgccaaagaa
    22141 cgactcactt cataagaaaa atccacatgg ccaggagtat caataagatt taaaacaaaa
    22201 ttttcattat taaatttata atttaaacgc actgattgtg cttttatggt gataccacgc
    22261 tctttttcta tatccatagt atccataact tgtgaactca tctgcctatc gctaatagca
    22321 ccacactcac taataatcct atctgcaaga gtagattttc catgatctat atgagctata
    22381 atagaaaaat ttctaatatt ttttaccgac aaaatttcat cctaaatata aaattttaaa
    22441 gctaggattt taacaaaatt tatgtttaaa acaaataaat tttattttat ataaaaaact
    22501 tcaattgaaa tttatataaa gtatattaaa atatcaaaat gtttaaaaaa tatttaaaat
    22561 cagctatatt tttagctctt tatcccttag caatgttagc ttctaatttg cacgaattta
    22621 tagcactaag tcaaaataat gaatcctatc tcattaagca aatgcaaagc gaacaagcaa
    22681 atttagacaa agaacaagct tttagaaatt acctaccctc tcttagtcta agctcagctt
    22741 atgtagccaa caataaagat cgcttcatta tcgatccaca agaaagttta tttgctaaag
    22801 tttctcttaa ttttttgctt tttgatggag gtgctagaga ggctaattta agagttttag
    22861 aaagcagaga aaaattaagc cttttagaca aagaacaaaa taaaaattac cttgccctaa
    22921 atgcaatcac actttatttt aacaccttaa gtcttgaaaa aattttacta gccaatcaac
    22981 aaaaagtatc ttttttaaaa tcaacttttg aaagattgca aaaattttac gacgcaggac
    23041 ttagccctaa agatgaactt gaaagcatta aggctaaata ccatttaagc ttattagagc
    23101 tcagtcaaaa tgaattaaaa cttgccaata tacaaaaaga gattaaaatt ttaagcgata
    23161 cagattttaa agtgcaaggg aatgcttttt tagaaaatcc gcaacaagaa aaaagtcaaa
    23221 actatgaagt aatgatagct aaagaacaaa tcaatcttgc taaagaaagt gtaaatttgg
    23281 caaaagctga atattttcca aaattttata ttcaagataa ttttaacttt tataaaaaca
    23341 attataatcc aaaagttcca gctccttttg caaatttagc ggatcaattc ttagaaaaat
    23401 attctcaagg taatcaattt attttaggta tggaatggaa aatttttgat ttcaatgcaa
    23461 gggctaaaga agttgaaaaa gagcgtttaa atgttcaaat agccaatgca aatgcaagat
    23521 ttagcgagag aaaaaataaa gaagaattaa attatttaga caaaagttta aaagttttac
    23581 aagaacaaat tttagctctt aatcttagct taaatgctgc aaatttagct tttgaaagtg
    23641 tagataaaaa ataccaagca ggacttgttt cttatgtaga atatcttcaa gctttagagg
    23701 ctaaatttaa agcacaaagc gatttagagc ttgctaaaaa tgaatttgaa attactaaag
    23761 caaattatta ttttaatgcg ggtatagatc ttaattcaaa ggttaaagaa tgaaaaaaat
    23821 tctattttta cttcttgttt ttaattgcgc ctttggcgaa gaaatttacg caagtttcaa
    23881 tgtagaagca tcaaaacaaa gcaaacttgc ccttgaaagc ataggtttgg ttcaaaaaat
    23941 tcctgtagaa attggacaaa aagtcagcaa aggagaactt ttacttgctc ttgatcaaga
    24001 aagtgaaaaa atagctcttc aaaatgctca aaattcttat caacttgccc ttgtagaata
    24061 cgaaaatacc aaaagtagga tgcaaaaaat caaagctgta gaaaatgtta tagacaaaca
    24121 aagctatgaa gatatgaaag ctaagtttga tgctgctaat ttaaatttaa acagagcaaa
    24181 aatcaatata gcttattata aaaatatcat ggcaaaaaaa gaattacgcg caccttatga
    24241 tgctattatc gcaaacaaat ttatacaagt gggcgaagga gtaggaggag tagctcaacc
    24301 tttaatagaa attttttcct atccacaaag caaactgatt ttaagttttg atgaaaaata
    24361 taaagataaa gttagattag gcgatgattt cttttataaa atcgatcaaa atggtacaga
    24421 attgaaagga aaaatcagcc ttatttatcc aagtatagaa gtaaaaacaa gaaaaattta
    24481 tgctgaagtg caaactacaa atctaacacc agggcttttt ggtgaaggta gaatcatcac
    24541 taaagattaa aaatgtttaa actagctata aaccgaccta ttaccgtgct aatgtttttc
    24601 ttagctctta tgatttttgg gctaatctct gcttttagca tgagtgtaaa tttatttcct
    24661 aatgtttcca tacctcttat aaaaatcaca agcaagataa atggggattt aaatttcgta
    24721 gaatcaaaag tcactaaaga aatagaaaat gctttaagtg aaatcgatgg agtaaagacc
    24781 ataacctcag ctgcatatga taattttagt gtaagtgtag tcgagtttaa actgggtaaa
    24841 aatcttgaag tagctgccaa tgatgtgcgt gataaaatag gaactttaag cctaccttct
    24901 aagcctgaaa ttgaaaaaat cagttcagat tctggttctg ctatttcact ttttctatat
    24961 tctaaagata aattacaact catgcgtgaa atcaatgaca aaataaaacc ttttttgcaa
    25021 agagttgaag gagtaggtaa aatcgaagct aaggggtttt tagaacccca aattcgcata
    25081 gaattaaaac caaacgaact tagaaaatac aatcttaacg cccttgatat agcaaatatc
    25141 atcaaaagtc aaaattttaa acaagcccta ggcgaactta acaacaatca agataactat
    25201 atcatcaaag gctattttga agccacaaat ttagaagaac ttagcaatct tcgcataaaa
    25261 acaggagtat ttttaagtga tattgctaat atttcaagcc tttatgaaga tgaaaaacaa
    25321 agtgctttat acgaaggtaa agaaggggtg cttttagaac ttggaaaaat cacaaattat
    25381 aacacccttg aaatgattaa aaatgtcaaa aatgccttgc ctattttaga aaaacaaatt
    25441 ccaaaagata taagcattaa tatgctttat gataaaagct taaatatcca caagcacctt
    25501 tctcaagtga tttttgatat ggttttgggg atttttctaa cccttgttat cgtgttttta
    25561 tttttaagaa atttaagtgc aactctcatt gcttgcatag ctatacctac ttctatcatt
    25621 tcaacttttt ttattatcga tcttttaggc tatgatttaa accgcttaac ttttatagct
    25681 ttaaccttaa gcataggaat ttttatcgat gatgctatag tagtgattga aaatattgct
    25741 aaaaaactaa aaacttatcc gcctttacaa gctgcttttt tgggtatcaa tgaaataggt
    25801 tttagcgttt taagcataag tatagtttta ctttgtgttt ttatccctat ttcttatatg
    25861 aactctatat cagggctttt tttcaatgcc ttaggcataa gcgttgcaag tgggatagtt
    25921 ataagctttt tggtttctgt atttttaata cctagtattg gggcaagatt tttaaatcca
    25981 aaagaaaaca agttttatga aaaaacagaa gctttttttg aaaaaataga gcaaaagtat
    26041 gaaaatttac tctataaaat tttacaaaat aaagtaaaat ttatcctagc cactcttgtt
    26101 tttatagggc tttcttttgc tttagccact cgcatagggc ttgatttttt acctatggaa
    26161 gatgatagtg aaattcaagt tttgcttgaa agcaaaaagg atttaagttt agaagccatg
    26221 aaagaaaaaa gtttaaattt gcttggaaaa atcaaaaatg atagcaatgt caaatacgct
    26281 tttttacttg taggctatga tgatgccaaa gatgctacaa aggctaaaat ttatgttaaa
    26341 cttaaaaatt tagacgaaag aaatttaaga caaagtgcca tagtaagttt atatcgtcaa
    26401 aaatttcaag atgaaagttt aaaaatcaaa attttagaac ttccaaagat agagggtgca
    26461 ggcattgatg atcccgtgca atttttaatc ttaggagatg atttaaacac tctaaaagaa
    26521 gctgcttctc aggcaaaaga aattttaggc actaatgcgc gcattgtaga tataagcgat
    26581 aatgctaatg ctacaaaaga tgaagtagcc ttacacatca acaaagaaaa agccaaactt
    26641 ttagatgtca atcctcaata tatcgctggg gttttagggt attctttctc gcaacttagc
    26701 gtaggaagca tggatagagg caattcaaaa gatgatatta tcctaagttt tgctccagaa
    26761 tttaaaaaaa acatagaagc tttaaagcgc attagcatta aaaacaacca aggtataaat
    26821 ttagaacttt caagcgtggt ggattttata tacagtaaag atttaaaaac tatcaatcgt
    26881 tacaataaaa accgctctgt gaaaatcaca gctggagtga atgatctttc cttaggagcg
    26941 gtgcaaaaac ttttactaga taatatggat aaaattttaa ataacaatcc aagtcttagc
    27001 tatgcttttt caggctttat caatctttta ggtgaaaccg tgcaaggttt tgctatggca
    27061 gtagcacttg cttttgtttt aatttatctt gttttagccg cactttatga aagttttatt
    27121 ctgcctttaa tcatcatgat aaccatgcct ttagcctttg gcggagcttc tatagggctt
    27181 tttatcacag ggcataattt ttcacttttt gtacttattg ccatcatctt actttttggt
    27241 atggtgggga aaaatgctat tttactcgta gatgtagcta ataaaaaatg ccatgaaggt
    27301 ttagatcccg ataaagctct tttaatcgct ggaaaatcac gcttaagggc tatattgatg
    27361 acaacttttg ctatgatttt tgctatgctc ccacttgctc tttcaagggg tgcgggctat
    27421 gaagctaatt ctcctatggc aatagccatt atctttggac ttataagttc gactttgctt
    27481 accttactcg tagtacctgc actttttaaa ttttgtttta aactagatag caaattaaga
    27541 aaaatttatg agagagaaaa attaaattaa ccaaaatgat taatttaatt tttttaagta
    27601 ttattcttat aaagtgcttt taagttatca taggcgattt gtattttttc aaactgttct
    27661 cttgcgtaag ctttttctat tgcacttttt ccttgatgaa aatcaggatg ataaagtttt
    27721 accaaaatca aatatttttg tctgatttca ctaagatcat tttgcggagt gcattctaaa
    27781 gtattaaaat aattactaaa aagcttagct aaagcattaa atttccattt catattttct
    27841 ttattgtgaa tattttggcg aaatttttta tactcttcgc ggtcaacttc aaaattcacg
    27901 caatatttta aatgctcgct ctcatctgca aaagcttcaa aaagttcaag ggtattctcg
    27961 tttttatatt ctaaaattag aatatttgtc atttcattat attctatatt atgatcttga
    28021 aaataatttc ttatataagt ataaataa
//
LOCUS       DARGEY010000009        26566 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.009, whole genome shotgun sequence.
ACCESSION   DARGEY010000009 DARGEY010000000
VERSION     DARGEY010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26566
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.009"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            81..1427
                     /locus_tag="SF008_000378"
     CDS             81..1427
                     /locus_tag="SF008_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CitMHS family transporter"
                     /protein_id="HEG8232685.1"
                     /translation="MEIFLALLGFFSLGLIVWLLLKDYTTPALAFISVSISVACILLI
                     LERLGFGVGVALGVKGGVFDIKTLVVFIKDGVKSVTDTAALFVFSILFFSVLNASGFF
                     TKILNAFLSKMKANVYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLGIRKT
                     SMLLIITSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWI
                     AKIEIKRGAGAGNLSGINLNIEKSEHHNEKWFWLNLLVAIGVIGLLISGIIPSYICFM
                     IGLAIILPLNYPNLKTAKKVLDRASGGAMLMYITLIGAGILIGVFDKSGIMEKMGVLI
                     LNFVPDYLGAYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIM
                     VIARNCATFISPVVPATLLGCGLAEVNIKDHIKRSFFYIWGISIICLIFAEVAGII"
     gene            1611..3608
                     /locus_tag="SF008_000379"
     CDS             1611..3608
                     /locus_tag="SF008_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HEG8232686.1"
                     /translation="MMYKKQNLPELTLRGLVLGSILTIIFTASNVYLGLKVGLTFSSS
                     IPAVVISMAVLSLFKTSNILENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQ
                     TFMICLCGGGLGVLFTIPLRRTMVVESKLAYPEGRAAAEILKVANKDQSSKKGKQGIK
                     EIALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAG
                     AIALFVGMFLAWGIFTPYLSNFEFDSAKNAVDLASSVWSSKVRLIGTGAIAIAALWTL
                     IELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVE
                     DANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSI
                     VFLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGYLVGATPWKQQ
                     VALLVGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDASSALAAPQANLMSTIAQGIF
                     HHNIEWGYMAFGVFVGILMIIIDKILRRTQKMSLPPLAVGIGIYLPPAVNIPLVIGGI
                     LKYIVMQHLTKKYAKNSHKEEKLASCEQRGTLFASGLIVGESIFGVIIAGITVFSVSM
                     GGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKKDA"
     gene            3683..4486
                     /locus_tag="SF008_000380"
     CDS             3683..4486
                     /locus_tag="SF008_000380"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEG8232687.1"
                     /translation="MENLYALILGIIEGLTEFLPVSSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAVGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVLILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLGFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLGNANSLIPLGIGFITAFI
                     VAVLVIKFFLKFISKFDFIPFGIYRIILGFVFFYLYYSGILNAGSEFKL"
     gene            4618..6426
                     /locus_tag="SF008_000381"
     CDS             4618..6426
                     /locus_tag="SF008_000381"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEG8232688.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ISKYEITKNEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEFEDLCRGPHVPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEV
                     AKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            6423..6941
                     /locus_tag="SF008_000382"
     CDS             6423..6941
                     /locus_tag="SF008_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEG8232689.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            6980..8071
                     /locus_tag="SF008_000383"
     CDS             6980..8071
                     /locus_tag="SF008_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEG8232690.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNNGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDLLQNIKKYYKNLIQ
                     NLDFQKGFISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIA
                     PLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEF
                     EVMQKDANILAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPK
                     DWNRSTFNKSKFAQDALFELINDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILE
                     QKYNTFRASRNLKNRNIHLHEQLYILVKN"
     gene            8113..11572
                     /locus_tag="SF008_000384"
                     /pseudo
     CDS             8113..11572
                     /locus_tag="SF008_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            11653..12681
                     /locus_tag="SF008_000385"
     CDS             11653..12681
                     /locus_tag="SF008_000385"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEG8232691.1"
                     /translation="MKIKVGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTPLNLCFENKNLDELELDLLFLATPHEFSAKLLNENLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQELLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFSSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYNLALHRHTPEIEEHLSY
                     AAKKKIILQFTPHLVSMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SLPQTRWVKSSNFADINFSVDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            12691..13137
                     /locus_tag="SF008_000386"
     CDS             12691..13137
                     /locus_tag="SF008_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8232692.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     NLSVVAVVDEEIVGSILCGHDGRIGGFYHVCVHKDHRKKGIAHEMTKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            13141..13986
                     /gene="argB"
                     /locus_tag="SF008_000387"
     CDS             13141..13986
                     /gene="argB"
                     /locus_tag="SF008_000387"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEG8232693.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKVTIEVASMVL
                     NHINKNLVHSLQNLGVKAIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIIAPIGMDEDFNTYNINADDVACAIAKALRAEKLAFLTDTAGLYEDFSDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            13990..15177
                     /locus_tag="SF008_000388"
     CDS             13990..15177
                     /locus_tag="SF008_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEG8232694.1"
                     /translation="MKMDYKEQSHIVPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGAMKTARKYAFNKGIKSGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHG
                     STYGGNPLVCAGVNTVFEIFKEEKILENVNKLTPYLEQSLDELIKEFDFCKKRKGLGF
                     MQGLSLDKSVKVFKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(15196..15825)
                     /locus_tag="SF008_000389"
     CDS             complement(15196..15825)
                     /locus_tag="SF008_000389"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HEG8232695.1"
                     /translation="MNAFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TIERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            15914..16462
                     /locus_tag="SF008_000390"
     CDS             15914..16462
                     /locus_tag="SF008_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HEG8232696.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESGIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDEKGKLKDAGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDNALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNDEEI
                     SFLKQSALNYVDFKNEFLKDLQ"
     gene            complement(16431..17804)
                     /locus_tag="SF008_000391"
     CDS             complement(16431..17804)
                     /locus_tag="SF008_000391"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEG8232697.1"
                     /translation="MMTSKTSLALLCDFYEFTMSQGYFKNNKKDQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDAEDIEFLRKQGIFDTEFLDFLANFKFKGEIYAMRE
                     GEVIFPNEPLLCIKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFGIQEGGVRIDSGNLLKLSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLELVYKEKRLLKKSSLNTIQDYTKEQISKLDESFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(17791..18813)
                     /locus_tag="SF008_000392"
     CDS             complement(17791..18813)
                     /locus_tag="SF008_000392"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HEG8232698.1"
                     /translation="MQRKRIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            complement(18827..19237)
                     /locus_tag="SF008_000393"
     CDS             complement(18827..19237)
                     /locus_tag="SF008_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEG8232699.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYVPILYLFYFLLGSKESFLN
                     NHFITTLCTFLFGLIQAIFLTKKAQSPGLKAYDLYLIDIKTGKKLSFLRILLRYVIFI
                     ISFGLLFGLFVSFVRKDRLNLHDILTQSCIATKA"
     gene            complement(19238..19846)
                     /gene="pyrE"
                     /locus_tag="SF008_000394"
     CDS             complement(19238..19846)
                     /gene="pyrE"
                     /locus_tag="SF008_000394"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEG8232700.1"
                     /translation="MNLGQIYKDCGAYLEDHFLLSSGKHSQFYLQSAKVLENPKLAAK
                     LCDELAKIIASYKIEFDSICSPALGGILAGYELARACSKRFIFTERVNKEMTLRRGFE
                     VKKGEKFIICEDIITTGGSALESAKIIESLGGIVVGFAALANRGFCAVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGSKAIKPGSRGN"
     gene            complement(19849..20412)
                     /gene="frr"
                     /locus_tag="SF008_000395"
     CDS             complement(19849..20412)
                     /gene="frr"
                     /locus_tag="SF008_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEG8232701.1"
                     /translation="MIMLSEIFNKQKTQSEKSLEALKKDFTTLRTGKVNTHILDHITV
                     DYYGTQTPLNQVATVLASDASTINITPWEKPLLKTIESAIAAANIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDAYTIKIDESVKSKESELLKV"
     gene            complement(20422..20793)
                     /gene="secG"
                     /locus_tag="SF008_000396"
     CDS             complement(20422..20793)
                     /gene="secG"
                     /locus_tag="SF008_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEG8232702.1"
                     /translation="MITLLIILQFIIVVVICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GPAGFLAKFTFVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPAT
                     PNTNSIAPSAAQLPSDVNSSK"
     gene            complement(20897..21592)
                     /locus_tag="SF008_000397"
     CDS             complement(20897..21592)
                     /locus_tag="SF008_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEG8232703.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVIGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            21753..22388
                     /locus_tag="SF008_000398"
     CDS             21753..22388
                     /locus_tag="SF008_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEG8232704.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRIGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKVQ"
     gene            22385..24268
                     /locus_tag="SF008_000399"
     CDS             22385..24268
                     /locus_tag="SF008_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEG8232705.1"
                     /translation="MKKIIFSLCFFILYLGAQEFKFIDANISKEDEGIYALVEKYVDL
                     NNQIKEFKKNNDENSSTFNGILSEFEKDKKTILAKIPDMIVGQKINEEAVARFLKAKE
                     KLLDVQKKNINKPYIYTDATLNLVYFNIVESFYSSLFEVEKLFKNTASSEDLIATVDK
                     AMENLQNSSNVNLDSFKSKITNSEELEKITLKERYISNAVDSYSEILKYLRSNADLLE
                     SNYIFSLLELQVWIDRINEAIGVSFVNIGKIVISALVLVFFISLRRFFANIVYFFLVQ
                     FFYRNKNDVDDIKVIFIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVY
                     AVLIAWLILRMLDGYGVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVK
                     DLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYIKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AIK"
     gene            complement(24291..25262)
                     /locus_tag="SF008_000400"
     CDS             complement(24291..25262)
                     /locus_tag="SF008_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HEG8232706.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(25272..26453)
                     /locus_tag="SF008_000401"
     CDS             complement(25272..26453)
                     /locus_tag="SF008_000401"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HEG8232707.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHP
                     ALREALDKLYAGLGANDLDDIIVTSCATESINWVLKGVYFDYILDKERNEVIISSVEH
                     PAVTAAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
BASE COUNT         8957 a         3582 c         4723 g         9304 t
ORIGIN      
        1 ctataaattt aaacacatat aagttggagt taaaatatcc tattttatta tcgaataaaa
       61 atgatacaaa aggataggat atggaaattt ttttagcttt attgggtttt ttctcgttag
      121 gattgatagt ttggcttttg ctaaaagatt atactactcc agcactagct tttataagtg
      181 taagtattag tgtagcttgt attttactta ttcttgaacg gcttggtttt ggcgtgggtg
      241 tagctttagg ggttaaagga ggtgtttttg atattaaaac attggttgtt tttattaaag
      301 atggagtcaa aagcgtaacg gatacggcag ctttgtttgt tttttctata ctctttttta
      361 gtgttttaaa tgcaagtggt ttttttacta aaattttaaa tgcattttta tcaaaaatga
      421 aagctaatgt atatcaagtt tgcattctta ctgtttttat tgctgctgct gtgcatttag
      481 atggttcagg tgcttctact tttcttattg taatacctgc attattacct atttatgagc
      541 gtttaggtat aagaaagact tcaatgttat tgattattac ttcggctatg ggggttatga
      601 atgttattcc ttggggtggt cctactttaa gagcggctac taatatagga atggatgcaa
      661 atttgctttg gcaccatatt atacctattc agattgtagg tttggtatta tcccttcttt
      721 tggcaatttg gattgctaag atagaaataa aaagaggtgc aggcgcaggt aacttgtctg
      781 gaataaattt aaatatagaa aaaagcgaac accataatga aaaatggttt tggttaaatt
      841 tacttgtagc tattggagtt attgggcttt taattagcgg tattattcct agttatattt
      901 gctttatgat aggacttgca ataattttac cgcttaatta tcctaattta aaaacagcta
      961 aaaaagtttt agatcgtgca agtggtggtg caatgcttat gtatattact ttaattggtg
     1021 ctgggatatt aataggcgta tttgataaaa gtggtattat ggagaaaatg ggtgttttga
     1081 ttttaaattt tgttccagat tatttaggcg cttatattcc tttgatggta gggatattgg
     1141 ctgttccaat ggcaattatt ttttgtacag attcttattt ttatggagtg atgcctatag
     1201 ttttgagtgt aactaaggct tttggcgctg aacctttgac tatagctatt atcatggtga
     1261 tagcaagaaa ttgtgcgaca tttatttctc ctgttgtgcc tgcaactttg ctaggttgtg
     1321 gtttagcaga ggttaatatt aaagatcata tcaaaagaag ctttttttat atatggggta
     1381 taagtattat ttgcttgatt tttgctgagg tagctgggat aatataatta aaataaaaga
     1441 acttttgatt tttcaatgat tggttcattg ttttatgata tttttgagtc aaaaatttat
     1501 aaaaatataa gcgttttttt gtattatttt attttgcttt agagaaaaat tataaattta
     1561 aacttataag aatatttttt aagttgaaag taaaatttta aaacggagaa atgatgtaca
     1621 aaaaacaaaa tttaccagaa cttaccttaa ggggtttggt tttgggaagt attttaacta
     1681 ttatttttac agcttcaaat gtatatttag ggttaaaagt gggacttact ttttcatcat
     1741 caattccagc tgtggtcatc tccatggcgg ttttgagtct ttttaagact tcaaatattt
     1801 tagaaaataa tatggttcaa actcaagctt cagcagcagg aactttatca tcagttattt
     1861 ttgttatccc agggcttttt atgtgtgggt attggagtga atttccactt tggcaaactt
     1921 ttatgatatg tctttgtggt ggcggacttg gagtgctttt tactatacca ttaagaagga
     1981 ctatggtggt tgaaagcaag cttgcttatc ctgaaggtag agctgcagct gaaattttaa
     2041 aagtagccaa taaagatcag agtagtaaaa aaggaaaaca aggcattaaa gaaatagcat
     2101 taggctcttt tatagctgct atttttagtt tgttaagcaa tggttttaaa ctcgctgcaa
     2161 gtgagagtaa ttttgctttt atttggaata aaatggcttt tggtttttct atgggatatt
     2221 ctttggcact tttaggggca ggttatttag ttggtttagc aggtgctata gctctttttg
     2281 taggtatgtt tttagcttgg ggtattttta ctccctatct ttcaaatttt gaattcgata
     2341 gtgcaaaaaa tgccgtagat ttagcttcta gtgtatggag ttctaaagta aggcttatag
     2401 gaacaggagc tattgctata gcagcgcttt ggactttaat agaactttta aaacccgtta
     2461 ttgaaggtat taaagaaatt gttaaaaatg ttaaaattac taatcaagaa aaaaatgaaa
     2521 gaacaaatat agacctttct ttaaaaagta tttttatact ttttgtttta atggttgtgg
     2581 gtttatttat tactttttat agttttgttg aagatgctaa cttaagtatt tattatcaaa
     2641 tgctattttc atttgttgga actttagttt ctgttttaat aggttttttt gttgcagcag
     2701 cttgcggata tatggcagga cttgtaggat cttcttctag tcctatttct ggaatcggac
     2761 ttattggtgt tattatttct tctattgttt ttttggtttt aggtgtggaa ctttttcaag
     2821 atcctatgct ttctaaattt gcagtagcat tagctatttt tactactagt gttattttag
     2881 ctacagctgc tatttcgaat gataatttac aagatttaaa gacaggatat ttagtcggag
     2941 ctactccttg gaaacaacaa gttgctttac ttgtaggctg tgtttttggt gctttggcta
     3001 tagttcctgt tttaaatttg ctttatcaag cctatggttt tgtcggagca atgccaagag
     3061 aaggtatgga tgcttcatca gctttagcag caccgcaagc aaatttaatg agtactatcg
     3121 cccaaggaat ttttcatcac aatatagagt ggggttatat ggcttttggt gtatttgtag
     3181 gaattttaat gattattata gataaaattt taagaagaac acagaaaatg tctttgccgc
     3241 ctttagccgt tggaataggt atttaccttc cccctgctgt aaatatacct ttagttatag
     3301 gcggaatttt aaaatatatt gtaatgcaac acttgactaa aaaatatgca aaaaattctc
     3361 ataaagaaga aaaacttgca agttgtgagc aaagaggcac gctttttgct tcagggctta
     3421 tagtgggtga aagtattttt ggggtaatta tcgcaggaat tactgtattt tcagtaagta
     3481 tgggtggtag tgaaaatcct ttagctttaa atttagcaaa ttttcatgat agtgagcttt
     3541 tcgcacttat cttttttgtg ggagttgtat tatatttcat taagcgtatt gttaaaaaag
     3601 atgcttaatt tttggggtta aaaccctatt taatccattc tgatataatt tttcttttgc
     3661 aattatcatt caaggattaa atatggaaaa tttatatgct ttaatacttg gaattataga
     3721 aggtctgact gagtttttac ctgtttcttc aacaggacat atgattttag gtacgactat
     3781 tttaggtatc gatatagatg agttttggaa aagctttttg attatcatcc agcttggttc
     3841 tattttggcg gtaatttttg tattttggcg taaattgttt caagggcttg atatttggtt
     3901 aaaacttgca gtgggatttt ttcctaccgg agttataggg ctttttgtgg caaaatactt
     3961 aaatgcttta tttaatggtt gggttgtggt tggaatgctc atttttggtg gtgttgtgct
     4021 tattcttata gaacttgcgc acaaaaataa acaatatcgt atcaattctt tagaagaaat
     4081 aagctttaaa caagcttttt gtataggtat ttttcaatct ttagccatga ttcctggcac
     4141 ttcaaggagt ggagcaagta ttattggtgg gcttttgtta ggatttaata gaaaagtggc
     4201 tgctgagttt agttttttgc ttgccattcc aacgatgatt atcgctacag cttatagcat
     4261 ttataaagag cctgagcttc ttggcaatgc aaattcttta attcctttag gcataggttt
     4321 tatcactgct tttattgttg cagttttagt tataaaattt ttcttaaaat ttatttctaa
     4381 attcgacttt atcccttttg gaatttatcg tattatttta ggatttgttt tcttttattt
     4441 gtattatagt gggattttaa atgctggaag tgaatttaag ctataaataa atattaaatt
     4501 tattctaaga ttttttttaa aaataagctg aatttcaaaa ataattaagt cttagaaagt
     4561 taaaattaga actttataaa cactcacagg gtaagtgagc gacaaagggt taaaaatatg
     4621 gaaaaagaag ttattgcgta tttggacaat gagacgataa ttgactctca aagtgtgaaa
     4681 aatacaaatt taaaagaaat ttattttgat aattctaaag aaagtttaga agtgatacgc
     4741 cattcttgtg cgcatttgat ggcacaggcg attaagagct tgtatcctga ggctaaattt
     4801 ttcgttggtc ctgttataga agatggattt tattatgatt ttcgtgtaga aagtaagatt
     4861 ggcgaagaag atttagtaaa aattgaaaaa aagatgaaag aacttgctga agcaaagatt
     4921 gaaatttcaa aatatgaaat cacaaaaaac gaagctttgg ctaaatttca aaatgatgat
     4981 ttaaaacaag aagttttatt gcgtattcct gatggagctg taagtattta taaacaaggt
     5041 gaatttgaag atttgtgtcg tggtcctcat gtgccaaata cgaaattttt acgctttttt
     5101 aaactcactc gtgttgcagg agcgtatttg ggtggcgatg aaaaaagaga aatgcttact
     5161 cgaatttatg ggactgcttt tgcagataag gaaagtttaa aagagtattt aaccattatt
     5221 gaagaagcta aaaaacgcga tcatagaaag cttggaacag agcttaaact ttttactttt
     5281 gatgatgaga tcggaggagg ccttcctatc tggttaagta atggtgcaag acttagatct
     5341 aaacttgaac atatgcttta taaaattcat cgtttgcgtg gttatgagcc tgtgcgtggg
     5401 cctgagcttt taaaagcaga tgcatggaaa atcagtgggc attatgcaaa ctataaagaa
     5461 aatatgtatt ttacacaaat tgatgaacaa gagtatggta ttaagcctat gaactgtgtg
     5521 ggacatatta aaatttatca aagtgatgta agaagctatc gtgatttgcc tttgaaattt
     5581 tttgaatacg gcgtagtgca tcgtcatgaa aaaagtgggg ttttgcacgg actttttaga
     5641 gtgagagaat tcactcaaga tgatgcacat attttttgta tgccaagtca gattaaagag
     5701 caggttttag aaattttagc ttttgtggat aatttgatga aattatttga ttttagctat
     5761 gaaatggaaa tttcaactaa acctgaaaaa gccataggtg atgatgaaat ttgggaaata
     5821 gcgactaagg ctttaaaaga agctttagat gaacaaggtt taaaatacgg tattgatgaa
     5881 ggtggcgggg ctttttatgg gccaaagatt gatattaaaa tcaccgatgc tttaaaaaga
     5941 aagtggcaat gtggaaccat acaagtagat tttaacctgc caagtcgttt taaacttgaa
     6001 tacactgata gtgataatga aaaaaaacaa cctgtaatgt tgcatcgtgc gattttaggt
     6061 tcttttgaaa gatttatagg aattttaacc gagcattgtg cgggtgagtt tccgtttttt
     6121 atcgcaccaa ctgcggtggg tatagtgcca ataggcgaag cacatattgc ttacgcaaaa
     6181 gaaattcaaa aagaattatt agagcttaat atcgatagcg aggtgtatga aaaaaatgag
     6241 agcttaagta aaaaaattcg tatcgctgaa aagcaaaaat tacctatgat tttagtttta
     6301 ggcgatgatg aggtggcaaa gcgtagcgtt gctttaagag atagaagagc taaagaacaa
     6361 aaaaatctta gcttggacga atttattaaa ttagttaagg agaaaatgag tgaggtacac
     6421 ttttgagtaa agaaaaagaa gtattgctca atgaagaaat aagagcggat gaaatcagat
     6481 gtgttggcga tgatggcaaa gtttatggta ttatcagtag tgatgaagct ttagaaattg
     6541 caaatcgttt aggacttgat cttgtaatga tagctgcaga tgctaagcca cctgtttgca
     6601 agatcatgga ctatggtaaa ttccgttatc aacaagagaa aaaacaaaaa gaagcaaaga
     6661 aaaaacaaaa agtgattgat ataaaagaaa tcaaactttc tgtaaaaatt gctcaaaatg
     6721 atattaatta caaggtaaaa catgctttag aatttttaga acaaggtaag catgtgagat
     6781 ttcgtgtgtt cttaaaagga cgtgaaatgg caactcctga agcaggtgta gctttgcttg
     6841 aaaaaatttg gactatgata gaaaatgaag ctaatcgtga caaagagcca aattttgaag
     6901 gtcgttatgt aaatatgctt gtaactccaa aaaaagctta atccactttt gtggataagg
     6961 cttttaaagg ttttaaattt tgaaagaaaa tccttctttt ttaaaagagc aaattataac
     7021 ttatcttgga aataaaagag cacttttaag ttttttaaat aatggcttta aggtagctaa
     7081 aaaagaactt ggtaaagata aatttagttt ttgtgatata tttagtggct caggtgttgt
     7141 aagtcgtttt gcaaaagcac actcaaatta tattttagcc aatgatttag aagattattc
     7201 aaaactcatc aatgagtgtt atcttgctaa taaagacaaa gatttacttc aaaatataaa
     7261 aaagtattat aaaaatttaa tccaaaattt agattttcaa aaaggtttta tcagtgagct
     7321 ttatgctcca aaagatgatg atgatattaa aaaaaatgaa agggtttttt atacttttaa
     7381 aaatgcttta tatcttgata ctataaggca aaaaatcgaa aatgaaattc caaaagaatt
     7441 gaggcatttc tttatagctc ctttgattta tgaagccagt gttcattcaa atactagcgg
     7501 agtttttaaa ggtttttata agggtaagga tggcatcgga aaatttggtg gcgaaggaca
     7561 aaatgcactt aaacgcatta aaggagaaat agagcttaaa atgcctattt tttcaaattt
     7621 ttcttgtgaa tttgaagtga tgcaaaagga tgcaaacata cttgcaaaag aacttgattt
     7681 ttttgatgta gtgtatcttg acccccctta taatcagcac ccttatagtt ctaattattt
     7741 tatgctaaat ttaattgcaa attataaaaa acctgaagaa atttctaaaa tcagtggcat
     7801 tccaaaggat tggaaccgca gtacttttaa taagtcaaaa tttgcccaag atgctttatt
     7861 tgaacttatt aatgatttaa aagcaagagt gattttactt tcttataatt gtgaaggttt
     7921 tgtaaaaaaa gaaatttttt taaagcgctt aagcactctt ggaaaatgcc ggattttaga
     7981 gcaaaaatat aatactttta gagcttctcg caatcttaaa aatcgcaaca tccatcttca
     8041 tgagcaactt tatattttag ttaaaaatta gtttttcgtg ctaaaattgc acttaaaaat
     8101 gaggagggat ttatgaaact aaaattatct ttttgtgcat taatggcatt tggtttttct
     8161 aactatcttt ttgcttcagc tattgatcca aagttatttt caagaatatc ttgattttgc
     8221 cagtaataaa ggcaaatttc aagtaggtca aattggcttt taaattttag caaaaaatcc
     8281 tagtcaaaat atctctttta atgtgcctat gattgatttt tctacttcaa atcgtggagg
     8341 aaaattccaa ggagaattta ccaatatagg acaatcttat atagtcagcg cttctcatat
     8401 gagtacaagt ttaaatactg ggaagtaaat aaaggctatg tgaaacaagg tagtgtttta
     8461 cactttggag gggtagcaaa tagaatcgta agctcaagtg ataattttac ttataaaaaa
     8521 gaaaatgtgg attttgctgt tttaaaaatg agtaagatta gtctcaataa aagtgcaaat
     8581 ttgagtaaag atttaaatct tattgaaaaa aattctggcg atggtggaga tatttatgaa
     8641 tacaaggatc cattttggga tagttgtcaa agtggaaaat gtgattattc aaaaggtaaa
     8701 ggcaagcttt ttgatagttc gcgttatgag tactttgcaa gagagggaag tggtattgta
     8761 gctttaggtt ttgaagatac aaataaagta cccattaaga tttttgattc taatgaaatc
     8821 aatttaggag gttttgtcag tttaactcct aaaaatactg aagataagcg ttttaagttg
     8881 caatttctta attataccaa tgataaaaga aattctttta caagttcttt aatatcctgg
     8941 gattctggaa gtggagtgtt tatgataaga tggataaaaa tggtatttag tgggtgtggt
     9001 aagtacgagt aattgtaatg tccattttac tatggatata cttgtttaca ggttgattat
     9061 gctttgatca atcaagtaaa gatcaatgaa ttttaaaatg ctcataaagt agccatagga
     9121 tctggaactt atacacttag tagcgatggt ttggtgaaag atggtaaaaa aatagaaaat
     9181 gtaagtttga tttctaagac taatgtgggt tatgtaagct ataaaaattc ttttgatgat
     9241 aaaaataatt gtgataagag aattgaagaa atgcaaaata gcaaggattt gtatttttct
     9301 caaaatggaa gtataaattt aaatagcgat gtggatttag gcgctagtgt tttaaatttg
     9361 ataaaaattc aaattggcaa ataacaggcg ataaatggct tatacatggc ggaatttatg
     9421 ctgataaggg ttcaaggtag aatataatgt taaaaccaaa aaagatgatt ttctttataa
     9481 aatgggtgaa ggagagcttg ttgtcaaaag tcaaagtgtg gatacaggac ttagaatggg
     9541 tgaggaccaa ggtaagtctt gagggtgaag gttgaagttt tggcgaaatt tatatgaatg
     9601 gtggaacttt ggatctatcg ggcttaacat taaaatttga tcaaattaaa gctaactcta
     9661 ataatgtttt tatcacaagc tctaaagcag gggcaaattt aaatttagaa aacaagcaaa
     9721 attatcttta tcatggcaat atttttcaga tgaggccata acaattagtg ctaatacaga
     9781 taaagctttg atttttgatg gtaatattta caataaagaa ggtgttttta ggacagaaaa
     9841 tgccaagtta aattttcaag gacatgctag aatacacgct tatgtaagca aagaacaagc
     9901 taaaaaactt caagaacatg gtttaagtgc tttaactaag cctgtaagtt ttacacaaga
     9961 agattgggaa gatagggttt ttgttttaaa agagcttaat ttagaaaaaa agcgagtttt
    10021 atttagggcg taatgtaagc ttaaaagtag aaaaccttaa tgctaaaaat tccaaaatag
    10081 agcttggaag taaaaatttg tggatcgatg aaaaagatgg ggaaaatatt attgataaga
    10141 ctgatgatta ttcttatgga gatgttgtat aaacaggagt tggcaaagaa atggcttttg
    10201 agcaaaagct ttaaaatacc caaaatgcta agatagaaaa ggtttatttt agtgtaaatt
    10261 taaatcttga tcattctgat gttactttgc aaaacacatt ttttagtggt aatatcaaag
    10321 gtatcaatga tacgcaaaaa aaaatcttgc gattaaagat tctttgcttg agtctcatat
    10381 ataaatgagc aatcttcaag tagaaaaaag tgctatttat aggaaagttg atgcaaaaaa
    10441 attaagtgca aataatacaa tatttaaaat caatgcggat tttgaaaatt ctaaagcaga
    10501 ttatattaat tctaaggaaa gcacacaagg agtaaataat actttagtat taatttttct
    10561 taataatcct agtaaaaagc gggtttaaat atcttactag ctcatttaaa agatgaaaat
    10621 aaacatttaa caaaggaatt ttttactatg ccaaatgtga gcaaggtttt agtacgtata
    10681 ccccaaatgt tgttttttct cataatgaag aaaattttgc ccagagtgga atttagaaaa
    10741 aattgattct aagattaaag atgaatattt ttttactaat gataatactc aagctattgt
    10801 aaaaactaaa tctatacttg ctcaagctat tttaggctcc atgataggag tgggataata
    10861 tgcataaaag aatgggggaa ttacgcaata atccttatga aagtggtgta tggttaagaa
    10921 cttttggatg gggtacgagt gatgagtata atagtggaaa atactttgaa attcaaagcg
    10981 gacatgataa attaaacgag tattcgaatt tcgagcttta cagtggagta aggtttttat
    11041 agtgattttg ttttagatat atttattatc aaaatgaaat aaatgcaaat tttattccag
    11101 gaaatcaagg tagattagat gataatgatg gttcgcataa tattatctta agtgctgagt
    11161 taggttatag aaaagcttat gataaatttt atcttgagcc gagtttggaa tttatcagtg
    11221 gttatgtagg agctatggat ctaaaaggag atattgctag tttaaaacga ttttcttata
    11281 ttcctttagt cgtaaaaaca gcatttttca taggaagtca aaattaaaat ttaaatttta
    11341 gaacaggact tggtttgtat gcggatccga ttaaagcagg agatcaaatc ttggaggatc
    11401 aagcaagtca gagaagatat gaaggaaaaa agatcaaaga atgtttataa atttaggaaa
    11461 tgattataag cttaacgata aaacacgctt tagttttgaa tttgaaaaga cattttttgg
    11521 cgatttaaat gtagattgga gtgcaaatgc taatttaaga tatagttttt aaataaaaaa
    11581 taatttaaaa attgtatttt tattttaagc ttttttgttt ataatacttg cttttacatt
    11641 taaaggataa agatgaaaat aaaagttggg attttaggag cgagtggtta tgcgggaaat
    11701 gaacttgttc gcattttgct taatcatccc aaggttgaaa tttcttattt gggttcgagt
    11761 tctagcgtgg ggcaaaatta tcaagatctt tatcctaaca cccctttaaa tttatgtttt
    11821 gaaaataaaa atttagatga acttgaactt gatcttttgt ttttggctac tccgcatgaa
    11881 tttagtgcta aacttttaaa tgagaattta ttaaaaaaga tgaaaatcat tgatttaagt
    11941 gcggattttc gtcttaaaaa tcctaaagat tatgagcttt ggtataaatt cactcatcct
    12001 aatcaagagc ttttgcaaaa tgcggtttat ggactttgtg agctttataa agaagagata
    12061 aaaaaagcaa gtttagtggc aaatccaggt tgttatacca cttgttctat cttaagtctt
    12121 tatccgcttt ttaaagaaaa gatcattgat tttagctcag ttattattga tgcaaaaagt
    12181 ggagtaagtg gagcaggaag aagtgcaaag gtggaaaatc ttttttgtga agttaatgaa
    12241 aatatcaaag cttataattt agctttgcat cgccatactc ctgaaattga agagcattta
    12301 agctatgcag ccaaaaagaa aatcattcta caatttaccc ctcatcttgt gtctatgcaa
    12361 agaggaattt taatcagtgc ttatgcaaat ttaaaagagg atttgcaaga acaagatata
    12421 cgcgatattt atacaaaata ctatcaaaac aataaattca taaggctttt accgccgcag
    12481 tcgcttccgc agactcggtg ggttaaatca agcaattttg cggatataaa ttttagtgta
    12541 gatcaacgca caaagcgtgt tattgtgctt ggtgctattg ataatttaat caaaggtgca
    12601 gcaggacaag ctgttcaaaa tatgaattta atgtttgatt ttgatgaaga tgaaggactt
    12661 aaattctttg caaatttgta aaggataaaa atgttaatac gagctatgca aaaaagcgat
    12721 tatgaagccg tttataagct ttggtgtgag ataaaaggct ttgggataag aagcattgat
    12781 gatagcaaag aaaatataga aaatttttta gatagaaacc caaatcttag cgttgtagca
    12841 gtggttgatg aagaaattgt aggaagtata ctttgcgggc atgatggacg cataggagga
    12901 ttttatcatg tatgtgtaca taaagatcat agaaaaaagg gtatagcgca cgagatgact
    12961 aaattttgtc ttgaggcttt aaaagctcaa aagattaata aaatcgcctt aatcgctttt
    13021 aaaaacaatg atttaggcaa tgagttttgg aaacattatg gttttacttt aagagaggat
    13081 gcgaattatt acgatctttc tttaaatgag tataatcaaa ctagctttaa tgcttaagga
    13141 atgatcatgc aaaaatattt agaaaaagct aatgtcttaa tcgaagcttt gccttatata
    13201 cgcaaattta attctaagat tatacttata aaatacggcg gatcagctat ggaaaatgaa
    13261 gagctaaagc attgtgtgat gcaagatata gctcttttaa aactcgtggg tttaaagcct
    13321 attattgtac atggtggggg aaaagatatt tctgctatgt gtgaaaaatt aggcgtaaag
    13381 agtgagttta aaaacggtct tagggttagt gataaagtca ctattgaagt agccagcatg
    13441 gttttaaatc atatcaataa aaatttagtc catagtttgc aaaatttagg agttaaagcc
    13501 atagggcttt gtggtaaaga tggcgcgctt ttagaatgtg tgaaaaaaga tgaaaattta
    13561 gcttttgttg gcacgataca aaaggtaaat tcgaaaattt tagaagagct tttagagaaa
    13621 gattttttac ctatcattgc tcctattggc atggatgagg attttaatac ttataatatt
    13681 aacgctgatg acgtagcttg tgcgatcgcc aaggctttaa gggctgaaaa acttgctttt
    13741 ttaaccgata ctgcaggact ttatgaggat tttagtgata aaaattcttt gatttctaaa
    13801 attagccttg aacaagctaa aattttagct cctaaaatag aaggtggtat gcatgtaaaa
    13861 ttaaaatctt gcattgatgc ttgtgaaaat ggagtcaaaa aggtgcatat tttagatgga
    13921 cgcgtgaagc attctttatt gcttgagttt tttactgatg aaggtatagg cactttggtg
    13981 ggttaaagga tgaaaatgga ttataaagaa caaagtcata ttgtccctac ttataagcgt
    14041 tttgatatag ttttagaaaa agggcagggg gtttatcttt ttgatgataa ggctaaaaaa
    14101 tatcttgatt tttcaagtgg tataggtgtt tgtgctttag gatataatca tgctaaattt
    14161 aatgctaaaa tcaaagctca agtggataaa cttttacata ctagcaattt atattataat
    14221 gaaaacatag ctgctgcagc taaaaattta gccaaagcta gtgctttaga gcgtgttttt
    14281 tttacaaatt ctggtacaga aagtatagaa ggagcgatga aaacagctag aaaatacgct
    14341 tttaacaaag gcattaagag tggacaattt atcgctttta agcattcttt tcatgggcgt
    14401 actttagggg ctttatcgct tactgctaat gaaaaatatc aaaagccttt taaaccttta
    14461 atttcagggg ttaaatttgc aaaatataat gatatttcaa gcgttgaaaa actggtgaat
    14521 gaaaaaactt gtgccattat cttagaaagc gtgcaaggag aaggtgggat aaatcctgca
    14581 aataaagatt tttacaaagc cttaagaaag ctttgcgatg aaaaagatat attattaatc
    14641 gctgatgaaa ttcaatgtgg tatgggtaga agtggaaaat tttttgccta tgagcacgca
    14701 caaattttgc ctgatatcat gacttcagcg aaggccttgg gttgtgggct tagtgtgggt
    14761 gcttttgtaa taaatcaaaa ggtagcaagc aattctttag aagcgggcga tcatggtagc
    14821 acttatgggg gaaatccttt ggtttgtgca ggagtgaata cagtttttga aatttttaaa
    14881 gaagaaaaaa ttttagaaaa tgtcaataaa ctcacgcctt atttagagca aagtttagat
    14941 gagttgatca aagaatttga tttttgtaaa aaacgcaaag gtttagggtt tatgcaaggg
    15001 ctgagtcttg ataaaagtgt aaaagtattc aaggtcattc aaaaatgcca agaaaatgca
    15061 cttttactga taagttgtgg agagaatgat ttgagatttt tacctccttt aattttgcaa
    15121 aaagaacata ttgatgaaat gagcgaaaag ttaagaaagg ctctaaagag tttttaataa
    15181 attttgtaaa aaagtttatt cttttccatc tactataggc acaaataaac attcttctaa
    15241 aatttctttt tgtaaatttg tgccattttt tctaaggcgt gtgatgaatt gtttgccatt
    15301 gtgtaaaata ggagcgacta aaatcccgtc atcgcttaat tgatcgagta aaatttcagg
    15361 aatttgtgtc gcataagcag aaaataaaat cctatcataa ggagcataat ttttccagcc
    15421 attttgccca tcatcaaatt ttacattgat attaaaaagt tctaattctc tgaaagtttg
    15481 agcggctttt ttggctaaat tttctatgcg ttctatggta aaaacacgcc ttatgacttt
    15541 gcttaaaatc gcagcttgat agccacttcc acaacctatc tctaaaatac tatcagcatt
    15601 tttaaaatct aaggccatag tcattttagc tacagttaaa ggtgaactaa tccattgaga
    15661 atttgccaaa ggcaaagcat caaggcgata agcatgggct tttaaaggag aaaaaatttc
    15721 acgcggaatt tgacaaaaag cattaaaaag ttcttcattg ataaaaactt tttgtgcaat
    15781 ttcttcagcc atattttgac atcttttttg ttcaaatgcg ttcattactt ctcctataaa
    15841 tttaaataaa aattgtaact aaaaaagttg aaatagagtt aaacttagct atacttaaat
    15901 aaaaaggaaa aaaatgctta taaaatttaa aaatcatagt cccaaactag gtcaaaatgt
    15961 ttttgttgca gagggcgcta aaatcatagg agaaatagaa ataggagatg aaagtggtat
    16021 ttggtttaat tgtgttttaa gagccgatgt taattttata aaaattggca aaagaaccaa
    16081 tattcaagat cttagcacgg tgcatgtttg gcatagggaa tttgatgaaa aaggaaagtt
    16141 aaaagacgct ggttttccta cgataatagg agatgatgta accataggac ataattgcgt
    16201 tatccatgct tgtgtgataa aaaatcgtgt tttaatcgga atgaatgctg ttatcatgga
    16261 caatgctttg atagaagaag atagcatagt gggtgctgga agcgttgtaa caaagggtaa
    16321 aaaatttccg ccacgctctt tgatacttgg aaatcctgca aaatttgtgc gtgaattaaa
    16381 cgatgaagaa ataagctttc taaaacaatc cgctttaaat tatgtggatt ttaaaaacga
    16441 gtttttaaaa gatcttcagt gatattttga agtttaggtg agagttttac ttcaaatttc
    16501 acaaaacgat caagatctaa aaaactctca tcgagttttg aaatttgctc ttttgtataa
    16561 tcttgaatag tatttaaaga tgacttttta agaagtcttt tttctttgta gactaattct
    16621 aaaagttctt tgcgttctaa attttcatct tgatttgggt tttcgtcaaa aacataaagc
    16681 tcatcaaaaa ggattttttg cgtgttttta tcataaaccc taaaaagctt tttaaaatga
    16741 ggtagggttg atttttcgtt attttcgctg attttgattt taggttttat gccttgatct
    16801 tctaaggctg cgagtttata aacgcaacta aaaatagggt cacttgaagc agtgatcaat
    16861 ctttcaccta caccaaagat atcaataggt gcattttgtt ctttgagttt tttaatactc
    16921 cattcatcaa gggcgttaga aactatgatt ttacattttt gaagtcctgc ttgatcaagt
    16981 tcttgtctga ttttcaaact caacttaagt aaatttccag aatctattct cacaccgcct
    17041 tcttggatac caaattcttt aaaaacttta atcgcatttt taagtccgct atttagacaa
    17101 tcataagtat caatcaaaaa aacaggattt tttggataaa ttttcacata agctttaaaa
    17161 gcttcaagtt cattttcaaa catttgcacc caagaatgtg ccatagttcc attgataggg
    17221 atattataaa tttttcctgc taaagtacaa gcacttccta tgcaacctcc tataaaagct
    17281 gctcttgctc cttttaaggc tgcttcactt ccttgtgctc tgcgtgaacc aaattctaaa
    17341 attttactgt ctttagctgc acgcacgata cgattggttt tggtagcaat aaggctttgg
    17401 tggtttaaac ttaaaagtaa aaaagtttct aaaagctgtg cttctatggt tgtagcttta
    17461 atacatagca aaggttcgtt tggaaaaatc acttctcctt cacgcatagc ataaatttca
    17521 cccttaaatt taaagttagc taaaaaatct aaaaattctg tatcaaaaat accttgtttt
    17581 cttaaaaatt ctatatcttc tgcatcaaaa ctcaaatttt caacaaagtc taaaatatct
    17641 tcaagacctg caaaaatagc aaaagatcct gaatctggaa tttttctaaa aaatatatca
    17701 aaataacaaa tttgatcttt tttattgttt ttgaaatagc cttgagacat tgtaaattca
    17761 taaaaatcac aaagcaaggc taaagaagtt ttagaagtca tcaaagctta tactaccctt
    17821 agaataattc gttactttac tttcaaagaa attgctcttt tgatcgttaa attttgaaaa
    17881 atcatctacc catttaatag gatgttttgc attgtataac ttatctaaat tgatcgcgct
    17941 taatctttga tctacaagat aatggatata ttcttctatg atatcatcag taaagcccat
    18001 gatttgattt tgagtgatgt atttacccca tttgatctca agatctccag cttttttaaa
    18061 catatcataa attttattga tattttcatc atggaacaaa tcaggtcttt ctttgcgtac
    18121 tgaattgatc atattttgaa ataataaaag atgtgtgatt tcatctcttt ggataaagcg
    18181 gatcatttgt gctgaaccta gcatttttcc tgcacgtgca agtgcgtaaa tggcagtaaa
    18241 accactataa aaatatactc cttctaaaat ttgatttgcc accatagcca aaagaagttt
    18301 attatcatct acatcgcctg ctaattcttc ataaatgctt gaaataaagt catttttttc
    18361 acgcaaagtt tcatcatgct tttccatttc ataaatcaaa tctgtattat cgcaaatcgc
    18421 ttctaccata acagcgtaag attttgaatg gtttgcctct tcataagctt ggcgtgctaa
    18481 aactgcattg atttcaggag ctgtgatgta agggttgata ttgtctgcta aattattggt
    18541 ttgaaaacta tccatagaaa taagctgact ccaaaccaaa tcatacattc ttttttcacc
    18601 tgcagttaaa ttacagcgat aatcaagtgc atctttagtt gtatccactt cttttggaaa
    18661 ccaagtattt gcctccatta aatcccaaag ttttaaagcc caagtatatt ttgccttagt
    18721 aaaatttaaa attccatgtg ggttaccatc aaaaacttta cgatctccta aggtttcgtt
    18781 tgaacttgga ttgtaaattc tttttctttg catttttaac ctttctttat gctttagtag
    18841 ctatacaact ttgagttaaa atatcgtgta aatttaaacg atcttttctt acaaaactga
    18901 caaataaacc aaagagtaag ccaaaactta taataaatat cacatatctt agtaaaattc
    18961 taagaaaact tagtttcttt cccgttttta tatcaataag atataaatca tatgctttaa
    19021 gacctgggct ttgtgccttt tttgttaaaa aaatagcttg aatcaaacca aataaaaaag
    19081 tacataaagt tgtgataaaa tggttgttta aaaaagattc tttagagcct aatagaaaat
    19141 aaaataaata caaaatagga acataaataa gaaaaatatc tataagcaaa gctctaaatc
    19201 ttagccatct agagctaatt tttgctttag ttttcattta atttccacgg cttcctggtt
    19261 ttatagcttt actccctttt ttacaaagtg gacaatttgt ttcatcataa atttcaaatt
    19321 caaaatttcc tagagtaaag agtggtaaat tttcaggtaa tttcgcatta tcttttcttg
    19381 gagattttaa attttctact gcacaaaaac cacgatttgc caatgctgca aaacctacaa
    19441 caatgccacc taaactttca atgatttttg cactctctaa agcactacca cctgtagtaa
    19501 tgatatcttc acaaattata aatttttcac cctttttcac ctcaaaacca cgtcttaaag
    19561 tcatttcttt atttactctt tcagtgaaga taaaacgttt actacaagct ctcgcaagct
    19621 cataacctgc taaaattcca cctaaagcag gagaacaaat gctatcaaat tctatcttat
    19681 agcttgcaat aatctttgca agttcgtcac aaagttttgc tgctaatttt ggattctcta
    19741 aaacttttgc actttgaaga taaaattgcg aatgtttacc tgaacttagt aaaaaatggt
    19801 cttctaaata agcaccacaa tctttataaa tttgccctaa attcatcgtt aaacctttaa
    19861 aagttcactt tctttacttt ttacactctc atcaattttt attgtgtagg cgtcggtaag
    19921 tttttgcact tcatcataag ctttttttgc ttcatcttcg cttattgcct tatctttttc
    19981 tagtttttta actgcatcgt tggcatcttt gcgtatattt cttatagaaa cttttgcctt
    20041 ttcacccata gctttagctt gctttacgtt ttcttctctt tgctctctag tcatcggagg
    20101 gaaaaataat tttacacttt cgccgtcatt gtttggattt acaccgatat ttgcagctgc
    20161 aatagcactt tctatggttt ttagtaaagg tttttcccaa ggagtgatgt taatagttga
    20221 agcatcgctt gctaaaacag ttgctacttg atttaaagga gtttgagttc cgtaataatc
    20281 cactgtaata tgatctaaaa tatgggtatt aacttttcca gttcttaaag tggtgaagtc
    20341 tttttttaag gcttctaaag atttttcact ttgggttttt tgtttgttaa aaatttcact
    20401 tagcattatc atttccttta attatttact tgaattaaca tcgcttggaa gttgtgctgc
    20461 acttggagcg atagaatttg tgtttggggt agcaggcaca ataggagcgc ttggaatagt
    20521 agtgttgttg ttttctactt taattttctc tgctagtgag tccttgctag ctttattgta
    20581 taaataacca agaccaatag tatttgcaat aagtaaaatt cccatgacaa aggtaaattt
    20641 tgccaaaaat ccagccggtc ctttggcacc aaataaactt tcattgcttc cactataagc
    20701 tccaagtcct atacttgaac ttttttgaag taaaactgct atacaaataa ctacaacgat
    20761 gataaattgt aaaatgatta aaagagtgat cattgaaaat tcctaaaagt taatttttaa
    20821 atgattattt taactaaata aaacttgaaa agttttgaaa cttgaaaagt ttttgtgaga
    20881 aaaatcccac aaaaacttat ctgctattga agcttcttaa gatattaagt aaagatacga
    20941 aaagattaac aaaatcaaga taaagtgcta ctgcaccttc gattggagtt tcataatttc
    21001 cgcggataat attttgcgta tcataaagaa tgtaaaatga aaataatatt gcagctactg
    21061 ctgaaatagc tagattaact atactgcttt ggaagaaaag gtttagtaaa gatgctgcta
    21121 caataacgat taatactata aataaagctt tgcctataac agtaaaatct ttttttgtat
    21181 tcatagcaaa tacgctaagt cctgcaaaag caactgttgt taaagcaaaa gcttgagcga
    21241 tgataattcc tccagctggt agagctaaaa ctgaaataag caaaggtgta agtgttaaac
    21301 ctgagcagaa agtaaaacca aaaagtaaaa caagatttaa tggagcttct ctttttttcc
    21361 attgcaaagc aaataaaagt ccgatttcaa cagcaaaaag gatccaaaaa gttacttgtg
    21421 attgtataaa aaatgatgct aaagcaaaaa ttcctacata cgcacctact gttgcagcta
    21481 ataatgaagc agcaaaaagt tgataagttt gtttaataaa aatacttaat tcgcttgagc
    21541 gtgtattttc aaattctttt gatcttgagt agtctctatc ataaagactc ataaaattct
    21601 ccttgcaaaa ttgttagatt ttttaaaatc ttgagcgaaa tctaacatat tagactaaat
    21661 aaaaagttaa tttatataat atctttatga ttaaatgaaa tctttgctga aattttgtta
    21721 taattttaag attttagttt caggttggtt ttatggaaaa tcttattagt ggtgcgatta
    21781 agtttatgca agaagacttt aaggagcatg aagaactttt tgaaagtcta aaaaataagc
    21841 aaaatcccca tactcttttt ataggttgtt ctgattctag agtaattcca aatttgatca
    21901 ccaatacggg tccaggtgag ctttttgtaa tacgaaatat tgcaaatata gttccacctt
    21961 atcgcattgg ggaagattac ttagcgacaa cttcagcaat agagtatgct ttaaattcat
    22021 tgcatattaa aaatatcgtc gtttgtggcc atagtaattg tggaggttgc aatgctcttt
    22081 attattctga tgaagagtta aataaaattc ctaatgtgaa aaaatggctt actatgttag
    22141 atccgataaa aaaagatgta atgatttttg caagagacga tttggctatg cgttcatggc
    22201 ttacagaaaa attaaattta gtaaattctt tgcaaaatat acttacttat ccaggcgtgc
    22261 aagaagcttt agatgaagga aaaatagaag tacatgcttg gtattatatt atagagacag
    22321 gtgaaattta tgagtatgat tttaaagcaa aaatttttac tttaatacag gataggaaag
    22381 ttcaatgaag aaaattattt ttagtttatg tttttttatt ttataccttg gagcacaaga
    22441 atttaaattt attgatgcga atattagtaa agaggatgaa ggaatttatg ctttagttga
    22501 aaaatatgtt gatcttaaca atcaaattaa agaatttaag aaaaacaatg atgaaaattc
    22561 aagcactttt aatggtattt taagtgaatt tgaaaaagac aaaaagacta ttttagcaaa
    22621 aatacccgat atgatagtag gacaaaagat taatgaagag gcagtggcta gatttttaaa
    22681 agcaaaagaa aaattactag atgttcaaaa aaagaatatt aataagcctt atatttatac
    22741 agatgccact cttaatctag tttattttaa tattgtggaa agtttttatt cttctttgtt
    22801 tgaagtggaa aaacttttta aaaatacagc aagcagtgaa gatttgattg ctactgttga
    22861 taaggcaatg gaaaatttac aaaattcttc taatgttaat ttagatagtt ttaaaagcaa
    22921 aattacaaat tcagaagaat tagaaaaaat taccctaaaa gaaagatata tcagtaatgc
    22981 tgtagattct tattctgaaa ttcttaagta tttacgctca aatgcagatt tgcttgaaag
    23041 taattatatt ttttcattac tcgagcttca agtttggata gatcgtataa atgaggcaat
    23101 tggggtaagt tttgttaata tcggaaaaat agtaatttct gctctggttt tagtattttt
    23161 tatatcttta agacgttttt ttgcaaatat agtatatttt ttccttgttc agttttttta
    23221 tagaaataaa aatgatgtag atgatattaa agtcattttt attgagaata ttaaaaaacc
    23281 cgtaggcttc ttgttgattg tctatgctat ttctctttgt cttactatag caacttatcc
    23341 tgcacctttg agtgtaaatt taagtaattt ttttcatata gtttatgcag ttttaattgc
    23401 atggcttatt ttaagaatgc ttgatggtta tggcgtggta ttggtttcta aacttgctca
    23461 aaaaagtgga aaaaaagaag ttgtaaattt aattattaaa attttatatt ttgtcattat
    23521 tattatagcc ttattatata ttcttgctca acttggtttt aatatttcgg ctattattgc
    23581 atctttggga attggtggtt tagctgttgc tttagcggcg aaagatatca ttgcaaattt
    23641 ctttgcttct atactcttac tttttgataa tagctttaat caaggagatt gggtagaggt
    23701 ttcaggcata gaaggaaccg tggttgaaac aggacttaga aaaactacta ttagaacttt
    23761 tgataattgt cttgtatttt taccaaattc aactattatg ggagctaata tcaaaaattg
    23821 gagcaaaaga cgcatgggtc gccatgttag aatgtatttg ggtgttggtt atgatgctac
    23881 tcctgaaaaa ctagaacaat gtgtaaaaga tctaagagaa tttttgcata caagtgattt
    23941 agtagctcac gatgaggata gcgcattaaa atatggcgat catacaacaa aatatcgtca
    24001 aaatcttgta tctattaatg atttagaagg ctataaaaat gcttgttatg tggctttaag
    24061 tgaatttgca gatagtagta ttaatataga gctttatttt tatatcaaag aaataggtgg
    24121 aaaagatttt agagaagcta gacaaagttt aatgcttgag tttatgcgta taattgaaaa
    24181 aaatggttta acctttgctt tcccaagtcg tagtatttat atagaaaatt taccacccct
    24241 tgatttgcaa gcaaaagcta taaaatagca agattttatc ttgctatttt ttaaaccggc
    24301 ataacgcgta tatttggact taattcttct tgtaaaattg tttcaatagc ataaagtgtt
    24361 gcaccacttc cactagaaca accactacaa gcaccaagat aacgaatata aacatcaatt
    24421 gctgcacctt cagccttttg tatatcaatc acttccaaat ctccaccatc attatgaagc
    24481 atagggcgaa tttcagcatc taaaacactt tcaactgctt ttaattgtcc cactacggtc
    24541 atttcatcaa aagctacatc acttttcatt gtatttttga gtttttctct atctatttca
    24601 gctctagttt cagctaaaat atctacaagg taataatctc ttttttcatg tccgcctggt
    24661 ttgatacagg atttacaaaa agcacccgct ttagtgtatt gtgtgatttc ttctacgcta
    24721 tgcaaatcat taagtttaat cacttcttta atagttccaa gacttaccct agcgcactcg
    24781 caaactataa tttgatcttc aaaatcttca ggacttatgc ctttataatg cgctgctgct
    24841 tgtttgatta catcataagc cataaccgaa cagtgcattt tttgaggtgg aacagctgga
    24901 gtttctggat tatcacgcat agcaaattcc acatctaaat ttgtgatttt tactgcttca
    24961 tctacagttt ttcctataca aagatccacc atagtatcac tacttgctat agctgtacca
    25021 caaccaaaac ttttaaattt tgcatcgata attttatcag ttttttcatc tacaagccaa
    25081 aaaagtctta ccgcatcgcc gcaactttct gcgccaaaat cagctacgat caattttgca
    25141 ttgcgtgctt tagcatcttc ttcactaaat tctcccatat gttgaggatt attcattcta
    25201 tcttgaactt tttgtgaata ctcatcccaa atggatccac caattaaact attttttccc
    25261 atttttcatc cttatttgta attatttgga ttataagcat aagtacaaga aattgctctt
    25321 aatctctgtg ttgcattttt aatttgtttt gctgcataat caatttcttc ttcagtgtta
    25381 aaacgtgaca aagaaagcct taaagctgta tgcgctaaat catgctccgc accgatagct
    25441 tccataatag gattgctttc taaagcttca cttgcacagg ctgagcccgt acttgcagct
    25501 ataccatttt tatttaaatc ccaaagcatt gcttcgcctt caactccttt aatacttgct
    25561 aagattgtat taggcacacg gtgttctctt tttccaacca ctgttgtatc aggcaaggct
    25621 aaaatttgat cttctagttt atctcttaaa cggcgtatat gagaatcttc aaaatcaagc
    25681 atagtatttg caatacgcaa agcctcgccc atagccacta tataaggtac atttaaagtc
    25741 ccgcttctac gaccacccat gtgttctcca ccgtgtaaaa gtggagtaag cttaagtcct
    25801 ttttttataa aaagtccacc cacacccttt ggtccatgaa atttatgtgc cgaaaatgaa
    25861 gcaaaatcaa ctcctacttg agttaaatta acctttattt tacctactgc ttgagtagca
    25921 tctgtatgaa aaagagcacc aaattcatgc gcaagttctg ccatcgcttt aatatcaaaa
    25981 atcatacctg tttcattatt tgcccacata acacttacaa gtgctgtttt atcgctaatc
    26041 actttacgca aatcttctac agtagaaact ccttcttcat ttacaggaag ttctatgact
    26101 tttactccaa gactttttaa aaaataagca gcagcagtaa cagcagggtg ttctacacta
    26161 gaaataatca cttcattgcg ttctttatct aaaatataat caaaatacac acccttaagc
    26221 acccagttaa tgctttctgt cgcacaggag gttacaatta tgtcatctag gtcatttgct
    26281 ccaagtcctg cataaagttt atccaaagct tctcttaagg caggatgtgt tgcgctacca
    26341 tattgatgaa ggctatttgg atttccatac atatccttta aaaaaggtag catcaactca
    26401 taagcattag gatcaagcat tgtcgttgcg ttgttatcta aatatacttt cactttaaaa
    26461 tccttaattt atccttaatt ttaattagga tattttttat ctttatttga aaacggataa
    26521 taacaaaaat ttataaaaat taggttaaaa attataacaa aaataa
//
LOCUS       DARGEY010000010        25748 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.010, whole genome shotgun sequence.
ACCESSION   DARGEY010000010 DARGEY010000000
VERSION     DARGEY010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25748)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25748)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25748
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.010"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1973
                     /locus_tag="SF008_000402"
     CDS             <1..1973
                     /locus_tag="SF008_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HEG8232708.1"
                     /translation="KFYGWGRKRTGRYAFLFHKKFGGSLILFEDGFIRSLNLGVENSP
                     SFSIVKDDIGIYYDATMPSKLENLLNTYEFKDEEIKQAKKAIELIKKYKISKYNNNLD
                     IPDDYFQKDEKRVLIITQTANDASLEFGFAKDFKTVDMIKDAIKENPKSKIYIKIHPD
                     VLSGKKQSDLDINSLSKECILITENFNPIALLEFFDKVYTKTSGMGFEALMQECECIC
                     YGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYAAYILYAEYFNPYLNQKSNIFDTIQT
                     LAKYKDIEKANSNRLFFFGFSKWKRKFVKPFFIAKNNEIIFLDFLDCLKNIQLKENDK
                     FFIWGKRIDYNALKTTLIKKAQDEDLLHFTPKISLVEDGFIRSISLGSDLTRPFSLII
                     DDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHENLKIN
                     AKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNR
                     VGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFY
                     AGWGLTKDKYRCERRTRKLSLEELVAGALIAYPRYINPKTKTLCEIEVCLDIMLNLQK
                     AYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK"
     gene            1970..3154
                     /gene="kpsS"
                     /locus_tag="SF008_000403"
     CDS             1970..3154
                     /gene="kpsS"
                     /locus_tag="SF008_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HEG8232709.1"
                     /translation="MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKL
                     NFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHAKAIKVAKE
                     LGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
                     MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIY
                     NLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRG
                     YKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTK
                     VCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFL
                     DK"
     gene            3227..4348
                     /locus_tag="SF008_000404"
     CDS             3227..4348
                     /locus_tag="SF008_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HEG8232710.1"
                     /translation="MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHVFNIKVDLSKIE
                     KNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIK
                     FGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLN
                     HFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYE
                     LVLVAHSVGTIVCIEVLECILRQNLDLSLLRKLKILTLGECIPLVSYQKKADEFRKKL
                     EFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKI
                     KRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI"
     gene            4345..5706
                     /locus_tag="SF008_000405"
     CDS             4345..5706
                     /locus_tag="SF008_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEG8232711.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMS
                     SKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDCKRAKAGDVIRQVLS
                     DIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSL
                     TWTLYLLSLYPKEQEKAYEEITQVLQGGVIEISHLRQFKYLTNIFKESLRLYPPVGFF
                     AREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPF
                     GVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSK
                     RKL"
     gene            5703..6122
                     /locus_tag="SF008_000406"
     CDS             5703..6122
                     /locus_tag="SF008_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232712.1"
                     /translation="MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK"
     gene            complement(6123..6470)
                     /locus_tag="SF008_000407"
     CDS             complement(6123..6470)
                     /locus_tag="SF008_000407"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HEG8232713.1"
                     /translation="MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLA
                     GLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSIS
                     HDNGFAIAIVAVV"
     gene            complement(6470..7006)
                     /gene="fliL"
                     /locus_tag="SF008_000408"
     CDS             complement(6470..7006)
                     /gene="fliL"
                     /locus_tag="SF008_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HEG8232714.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKADKPKVSAPAQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            7109..8497
                     /gene="pgmL"
                     /locus_tag="SF008_000409"
     CDS             7109..8497
                     /gene="pgmL"
                     /locus_tag="SF008_000409"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase PgmL"
                     /protein_id="HEG8232715.1"
                     /translation="MNLKEKMLDVIFREYDIRGLYDKELNEKSVKAIGFCLGQTMLNR
                     GCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANV
                     MITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILNLY
                     VKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAEPDGQFPNHAP
                     DPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKDIPN
                     PRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRY
                     FGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKE
                     IEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVF
                     TLFNDIKARFKN"
     gene            8544..8921
                     /locus_tag="SF008_000410"
     CDS             8544..8921
                     /locus_tag="SF008_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 family protein"
                     /protein_id="HEG8232716.1"
                     /translation="MKKILILLTLCAFAFGASECDRKIDRINKEISFSKAHNDTARTL
                     SLELALKQVQNDCAKDPMFYDKKLEAKKLKEQEVEKIEKELDALKEQKDYMSKAEYKA
                     KKEALKEQKEKIKKEIKEYIDNL"
     gene            complement(8953..9279)
                     /gene="rsfS"
                     /locus_tag="SF008_000411"
     CDS             complement(8953..9279)
                     /gene="rsfS"
                     /locus_tag="SF008_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEG8232717.1"
                     /translation="MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGER
                     HALSLIDELKTRLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLEN
                     LKKGRV"
     gene            complement(9307..9852)
                     /gene="nadD"
                     /locus_tag="SF008_000412"
     CDS             complement(9307..9852)
                     /gene="nadD"
                     /locus_tag="SF008_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HEG8232718.1"
                     /translation="MKIALFGGSFDPPHNGHNSVVLEALGKLDIDKLIIMPTYINPFK
                     QSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLL
                     IGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNT
                     NEVCEEIKDEVKKYYEKLQKN"
     gene            9912..10910
                     /gene="gap"
                     /locus_tag="SF008_000413"
     CDS             9912..10910
                     /gene="gap"
                     /locus_tag="SF008_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEG8232719.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGVQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAATTNLKGILMVDDD
                     ERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
     gene            10913..12115
                     /locus_tag="SF008_000414"
     CDS             10913..12115
                     /locus_tag="SF008_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEG8232720.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKT
                     KAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            12112..12783
                     /locus_tag="SF008_000415"
     CDS             12112..12783
                     /locus_tag="SF008_000415"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEG8232721.1"
                     /translation="MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVAFL
                     ENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGV
                     SAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFI
                     KLIKG"
     gene            12787..13611
                     /gene="fabI"
                     /locus_tag="SF008_000416"
     CDS             12787..13611
                     /gene="fabI"
                     /locus_tag="SF008_000416"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HEG8232722.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVA
                     KAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            13615..15108
                     /locus_tag="SF008_000417"
     CDS             13615..15108
                     /locus_tag="SF008_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEG8232723.1"
                     /translation="MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILAKHLS
                     LGNEIPVLAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILDKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANISSYAKLCNEE
                     LKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGASLVENYKKSFEKNYAFIEQ
                     NFDENPMPSKDFWKYLEMSFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAE
                     KPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS"
     gene            complement(15105..16958)
                     /gene="feoB"
                     /locus_tag="SF008_000418"
     CDS             complement(15105..16958)
                     /gene="feoB"
                     /locus_tag="SF008_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HEG8232724.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSVLSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKSPEKEDLLYFINQLSKKIITHKKEERNLTKKIDA
                     LLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNALGEFVKNNISNTFIASAL
                     ADGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPL
                     ITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNY
                     LFGIYILGAILGLFAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLIWFMVYNKAKMYL
                     KKAGTFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFKPLEL
                     DWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILF
                     VMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN"
     gene            complement(16955..17179)
                     /locus_tag="SF008_000419"
     CDS             complement(16955..17179)
                     /locus_tag="SF008_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HEG8232725.1"
                     /translation="MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDTSCVILRSDEAKTIEVNLI"
     gene            complement(17261..18601)
                     /locus_tag="SF008_000420"
     CDS             complement(17261..18601)
                     /locus_tag="SF008_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HEG8232726.1"
                     /translation="MFYSEILADFIFNLKYENIPNTVVQRAKELMLDSLGTAIAASKE
                     ECVLNAFKAFENLSTEKNTPIWVNDQKLDPIYAAMLDSIASHALDFDDTHTEAILHAS
                     AILTPLCLSYGFHVSKDAKKIIKAFIIGWEIAARVGIASKGTFHKRGFHTTAIAGIFG
                     SVSASAILLDLNKEQIINALGLAGSFASRVNEFLSNGSNSKVLHIANAIKNGIMVAHF
                     AKNNMSGPLSIFEGRDNIFKCFGIEEECDKTELSKALGEIWQTMQVSIKPYPSCHFAH
                     GLIDCAIALKNDGLKADEIKSIHCFVDEVPISFICDPLEAKYTPNSAYEAKFSMPFLM
                     ALGFFDGKITLESYENLKREEVLEFAKKISYKKRKSQGFPKYFPGHLEASLQDGRIIQ
                     KDVFINKGNFDNPLSFEELKAKFLANAQIYLDNTKANKILDQIINLENLNHFSF"
     gene            complement(18610..19977)
                     /locus_tag="SF008_000421"
     CDS             complement(18610..19977)
                     /locus_tag="SF008_000421"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG8232727.1"
                     /translation="MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFGVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLDVPNISWQSARDRFIELGFVLGNINATFNKIAHEILILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEKQKTFKEVLLADKRVSKVLKEKEIDALLDATTYVGYAPKLVDEFLAKIKN
                     SAILK"
     gene            complement(19987..21151)
                     /locus_tag="SF008_000422"
                     /pseudo
     CDS             complement(19987..21151)
                     /locus_tag="SF008_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
     gene            complement(21164..22604)
                     /gene="dcuC"
                     /locus_tag="SF008_000423"
                     /pseudo
     CDS             complement(21164..22604)
                     /gene="dcuC"
                     /locus_tag="SF008_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            complement(22608..22970)
                     /locus_tag="SF008_000424"
     CDS             complement(22608..22970)
                     /locus_tag="SF008_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEG8232728.1"
                     /translation="MSNYPKAIGPYSAYREVNGLLFISGQLPINPDSGEIESHDIKEQ
                     TKQSLKNIGAILEENGISYDKVVKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEIIAQKG"
     gene            23138..23794
                     /locus_tag="SF008_000425"
     CDS             23138..23794
                     /locus_tag="SF008_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEG8232729.1"
                     /translation="MDEGQKQQFIKLTYFLGEVLGEQYEIVFHVITEDGAYIAAIANN
                     HISGRSLDSPLTVFASELMQNKKYLEKDFLCDYKALVGKSKLIRGSTFFIKNHDKLVG
                     ILCINHDTSIMRDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDILVQSV
                     DSSYLNSDYQLSITQKEEIAEKLYEKGIFNIKGAVPIVAKFLKISEPSVYRYLKKFKK
                     "
     gene            complement(23795..24265)
                     /locus_tag="SF008_000426"
     CDS             complement(23795..24265)
                     /locus_tag="SF008_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HEG8232730.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNECENLKIMIEAGLNVNLK
                     THKGDSLLMLAAYNNSYESAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGRKDVAEFLLKKSKNNFLKKISLKILKFIKKF"
     gene            complement(24322..25746)
                     /locus_tag="SF008_000427"
     CDS             complement(24322..25746)
                     /locus_tag="SF008_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HEG8232731.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSGAYGEIKITADLSAYTKAKIFQKGEITPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGI
                     KNLTNQEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLT
                     KIWPHSLVPLMDIGEMILNKNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDK
                     SYLEPDLVLEGVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKII
                     TRALEHFEKISPDYAKGIKKALEK"
BASE COUNT         8778 a         3693 c         4370 g         8907 t
ORIGIN      
        1 aaaaatttta tggatggggg agaaagcgta ccggtagata tgcattttta ttccataaaa
       61 aattcggtgg ttctttgatt ttatttgaag atggatttat tcgctcatta aacctaggag
      121 ttgaaaatag cccaagtttt tctatagtta aagatgatat aggcatttat tatgatgcaa
      181 caatgccttc aaagcttgaa aatcttttaa atacttatga atttaaagat gaagaaatca
      241 agcaagctaa aaaagctata gagcttatca aaaaatataa aattagcaag tataataaca
      301 atcttgatat cccagatgat tattttcaaa aagatgaaaa acgcgtttta atcatcactc
      361 aaacggccaa tgatgcctcg cttgaatttg ggtttgctaa agattttaaa actgtcgata
      421 tgataaaaga tgccataaaa gaaaatccta aatctaaaat ttatataaaa atccatcctg
      481 atgttttaag tggtaaaaaa caaagtgatt tagatataaa ttccttatct aaagaatgta
      541 ttttaatcac tgaaaatttt aatcccatag ccttgcttga gttttttgat aaggtttata
      601 ccaaaacttc tggcatgggt tttgaagctt tgatgcaaga atgtgagtgt atttgttatg
      661 gtatgccttt ttatgcaggt tggggtctaa caaaagataa attagagtgt aaaagaagga
      721 tgcaaaaaag aagtttagaa gaagttttct atgctgctta tatactttat gctgagtatt
      781 ttaatcctta tttaaatcaa aaaagtaata tttttgatac tattcaaact ttagcaaaat
      841 ataaagatat agaaaaggca aattctaata gacttttttt ctttggattt tcaaaatgga
      901 aaaggaaatt tgtaaaacct ttttttatag ctaaaaacaa tgaaatcata tttctagatt
      961 tcttagattg cttaaagaat atacaattaa aagaaaatga taaatttttt atttggggta
     1021 aaaggataga ttataacgct cttaaaacta ctcttataaa aaaagcgcaa gatgaggatt
     1081 tgctccattt tactcccaaa atttctttag ttgaagatgg atttattcgc tcaatctctt
     1141 taggttctga tcttacgcgt cctttttctt taatcattga tgataaagga ctttacatag
     1201 atccaaataa agcaagcaaa ttagaagagc ttttgcaaaa tgaaattttt gatgaaaata
     1261 tgctaaatag ggcaaaaaat attataaaaa tcttacttga gaaccgcttt tcaaaatata
     1321 atggcttaaa gcatgaaaat ttaaagatca atgccaaaat aggacaaaag attattttaa
     1381 tccccgccca agttgaagat gatgcttcga tgattttagg gggttttggt ttatctactc
     1441 ttgatttgct taaggaggtg cgttctaaaa atcaagatgc ttatatcatc tttaagcctc
     1501 atcctgatgt gttaagtggc aaccgtgtag gtttaaaaga tgaaacactc atcttggaat
     1561 tttgtgatga gattgtaaaa gattgcagta tcgatagtgc tataaaaatt gctgatgaaa
     1621 ttcacactat tacttctaca agtggttttg atgctctttt aagagctaaa aaagttttta
     1681 cttatggtat gcctttttat gcgggctggg gtttaacaaa agataaatat agatgcgaaa
     1741 gaagaacaag aaaactaagc ctagaagagc ttgtagcagg tgctttgata gcatatccaa
     1801 gatatataaa tcctaaaaca aaaactttat gtgaaattga agtttgttta gatataatgc
     1861 taaatttaca aaaagcttat ttttcaaaaa aatatataaa attggcaata gattttaaaa
     1921 cttttatgct tagaaaaata agaagatttt atgaattttt agcaaagaaa tgagatttag
     1981 cactaaaatt aaaaaagaat ttagcggtaa aaatgtttta ctcttgcaag ggcctgtggg
     2041 aaattttttt catcatcttg caataaaaat gaaaaaaaaa caaaccaaag tttttaaact
     2101 caattttaac ggtggagatt tttttttcta tcctagtgga acgaggtgta agtgcgatga
     2161 aaaagatctt gaaaatttct atagagattt ttttcaaagc aaaaaaatcg atgctatttt
     2221 aatgtataat gattgtcgta ttatccatgc taaggctatt aaagtggcta aagaattagg
     2281 aattgaaata tggatttttg aagaaggata tttaaggcct tattgtatta ctttggaaaa
     2341 agatggggtg aatgcaaatt cttctttacc gcgtgataaa aatttttatc tttctcaaaa
     2401 tatttttacc aaagaaagca taaaagaaat tccaggtgga tttaaattta tggcttttga
     2461 tgcttttttg tattggttgt ttgcttttat tttggctcca ttttttaaca acaaacttca
     2521 tcatcgcact ttatatcctt ttgaattttt attttggttt agatcattgt atagaaagta
     2581 tctttataag attacagaaa aaaaactaaa tgaaaagatt tataatttag aaaaaaagta
     2641 ctttttggcg attttacaag tttatagcga tacgcaaatt aaatatcatt acaaaaaaag
     2701 catagagcac tttatagagg aaaccatact ttcttttgca aaccatgcaa gagctaaatc
     2761 ttatctagtt tttaaacacc atcccatgga taggggctat aagaattatt ctaaactcat
     2821 aaatgattta agtcaaaaat atcatgtaga aggaagggtt ttatatgttc atgataccca
     2881 cttgccagtt cttttaagaa aggctttggg ttgtattact ataaattcaa cagtaggcct
     2941 tagtgctatt ttagaaggct gtccgactaa ggtttgtggc aatgcttttt atgattttga
     3001 aggcttatct tatccaaaaa aacttcaatt tttttggcgt gaagctcatg cttataaacc
     3061 caatcctgtt ttggtatgta attttaaaaa atatctttta caaactaatc aattcaacgg
     3121 caatttttat aaaaatttct ttttagacaa ataagactaa aaagctttga ttaagagagc
     3181 ttttaaagca aagttgttat aattaaaagc aaaaagaaat tattgtatgg atagggaagt
     3241 attttatata gcaggatatg atcctaaaag ttatagattt tattatgatt tatttaaaaa
     3301 aaacctaaaa gattattctc atgtttttaa tattaaagtt gatttaagta aaattgaaaa
     3361 aaatgagcaa tttccttttt ttcaaatttc ttgcgaagga gtacaaacta aatatcattt
     3421 tttaacatgg aatgatattg ttaagaaaaa ttggtcagaa aattataaag atgctttggc
     3481 agattgttat agttttttta gaatttatac tatcacaggg ctttttatca aatttggcaa
     3541 agagtcgatt tatcaactta tcacaggtta ttatcctttt ttttatgtgt tattttcttt
     3601 actattttct ttggttttgg cttttggaag ttttgctttt ttgcaaaatt atatgcattt
     3661 ttctttagct attatcatag gatgtttttt aggattttta ctaaatcatt ttttatttaa
     3721 attaggtaag aaattagctg tattttggat agcaagaatt tgtgcttttt gtgctacttg
     3781 gcaagataaa aaaacaggca ctatgcaaga aagaatcaag ctttttgcga ataccatagt
     3841 agataagcta aaacaaaatg aaaataaaca agattatgaa cttgttttag tagcacatag
     3901 tgttggaact atagtttgta tagaagtttt ggagtgtatt ttaagacaaa atttagattt
     3961 atctttactt cgtaaattaa aaattcttac tttaggagaa tgcattcctt tagtgagtta
     4021 tcaaaaaaaa gcggatgaat ttagaaagaa gcttgaattt gtttcaaggt ttgatttaaa
     4081 atggtatgat tacacatcga ttattgatgg agcatgtttt cctcaagtgg attttttccg
     4141 cacgagtggt gtaaatgcta aatttacacc cccattttta agtgctaaat ttcacacttt
     4201 atatgaaaaa catgagtata aaaaaataaa aagagataaa aacaaagcgc actttttata
     4261 tctttatagt attagtgtta aaggtgatta tgattttttt tctttcatca taatgcctaa
     4321 atttttagaa gaaaaggtaa aaatatgagt gaatgcccct tttttccaaa accttataaa
     4381 aataaagctt ctacgctttt aacttttttg ttaaagcgta gatcttggct tgacgggctt
     4441 tatgagcgta gttataaaat gcaaacaggc tatgtgaaga tgccaaattt tgatctttat
     4501 gtcataaatg acactaaaga agttaaaaga atgatggttg atgaggttag agaatttcct
     4561 aaaagtgcat ttttacatga gcttttaagt ccgcttttag gggagagtat ttttactaca
     4621 aatggtgaag tttggaaaaa acaaagagag cttttgcgtc caagttttga aatgactcgt
     4681 atcaataaag tgtttaatct tatgagtgaa gctgtggcag atatgatgga tcgttttagc
     4741 aagtatccaa atcatgctgt tatcgaagta gatgaagcta tgacttttat taccgctgat
     4801 gtgatttttc gcaccattat gtcttcaaaa ctcgatgagg aaaaaggtaa aaaaatctta
     4861 aacgcatttg tgacttttca agagcaaagc gtgcatacag ccatgcgtcg tatgtttcgt
     4921 tttccaaaat ggctttctta tgtgttagga gattgtaagc gtgctaaggc cggagatgtg
     4981 atcagacagg ttttaagtga tatcataaaa ccaagatatg atatggcaga taatgcagaa
     5041 tttgaagata ttttaggatc tttgctttta gtagtggatg ctgatacaaa taagcgtttt
     5101 tcttttgagg aaattttaga tcaagtggct atgctttttt tagcaggaca tgaaaccaca
     5161 gcaagttctt tgacatggac gctttatttg cttagtcttt atcctaagga gcaagaaaaa
     5221 gcttacgagg agattactca ggttttacag ggtggagtca ttgaaatttc gcatctaaga
     5281 cagtttaaat acttaacaaa tatttttaaa gaatctttaa gactttatcc tcctgttggg
     5341 ttttttgcaa gagaggcaaa aaaagatact caagttagag ataagcttat taaaaaaggt
     5401 tctggggtgg tgattgctcc ttggctgata cacagacatg aagaattttg gacaaatccg
     5461 catggattta atccttctcg ttttgaagga gagtacaaaa aagatgctta tttgcctttt
     5521 ggggtagggg aaagaatttg tataggacaa ggttttgcta tgcaagaagc gattttgatt
     5581 ttggctaata ttttaaaaac ttacaaacta gaacttgaag aaggttttgt acctgatgta
     5641 gtagggcgtt taacagtgcg ttcggctaat ggtatgagga taaaatttag caaaagaaag
     5701 ctatgaaaag agttagaact aaaattcgcg ccaattttcg tcgtcgtgta aaacgcactt
     5761 taaaaggaag cttaaaagaa aaattagcag ggactattct gctttgtgca atagtacctt
     5821 tagcagtttt aggatatctt tttatcgtga ttataggaat tttttttaat accgcacgag
     5881 caagacaggg tgttagagcc ttagatcatt ttgtaaatgc aagcttgttt aatggctatg
     5941 cttgggagag cgtttcttct catgcgtggc gtgaaagaaa tcgcaaaaaa tgggcaagga
     6001 ttgttataaa aatcacagat ttttttcaaa aagatcattg taaaagagca aacaaaagag
     6061 aacaacctgt ggtggatttc atactttcaa gaaatttaga caagcaaact ataggaaaat
     6121 aatcaaacta cagccactat ggctatagca aaaccattat catgagaaat acttagggaa
     6181 gtttgagtga tattaaaatc ttttgtaatt ttttgagaat attttaattt aggcgcgttt
     6241 ttttcatctt ttgatatttc aatatcaaaa aaactgcata attcacaaat tccaacaccc
     6301 aaagccttgc tagcggcttc tttagcagcc caaagacctg ctagagttgc tggattttta
     6361 atgagtattt gttcttttgg gcttagaaat ttatccaaaa aatttttgcc atgtctagaa
     6421 tgaatttttt ctattctaga aatggcgatg atatcacagc ctacacgcat taagaaacta
     6481 caaaatccgt aaaataaaca tttttaataa agccatcggt taaaatttca ttgatttttc
     6541 caactagctc atcttttaaa cgttctttgc ctttttgtgt acttacttct tcaaaagttt
     6601 tagctgttaa tgtacgaata ataatatcac gaatgactgg gactttttta tcaagttcag
     6661 gttttaaaag ttcgctattt tgttctagtt ctatagtgca ttttacatat cttgagccgc
     6721 tatcgctaag caaatttagg gtaaaaggat caagtggata cataggacct atattagcaa
     6781 aatcactacc tcgctgagca ggagctgaaa ctttaggttt atcggctttt gcctcttctt
     6841 ttggagcttc tttgacttca ctttcatcac ttgaactgct tgaaataagc caagcaatta
     6901 ctcccataat actaagaagt aaaacaaaaa gtaaaataac aataataatt acaagtgaac
     6961 cacctttttt cttttttgtt tcttcgtttt ctaattcttc atccataaat tttccttcat
     7021 ttagtgaaat taatgtaaaa ttgtagcaaa aatttctttt ctatccaaat ttgctttaga
     7081 aaaacgataa atttaggtca aagaagagat gaatttgaag gaaaaaatgt tagatgtgat
     7141 ttttagagaa tatgatataa gaggacttta cgacaaagaa ttgaatgaaa aaagcgttaa
     7201 agctataggt ttttgtttgg gacaaactat gttaaatagg ggttgtaaaa atgtaagcgt
     7261 gggctatgat gcaagatata gtgcaaatga actttttaat tatctagtga gtggacttaa
     7321 caaagcggga ataaaaatct atgatatagg gcttgtacca actccattgg gatattttag
     7381 tctttatgag ggcttaaaat ttgatgcaaa tgttatgata acaggctctc ataacccaaa
     7441 agattataat ggttttaaaa ttactattaa taaagaaagt ttttttggtg tagaattaaa
     7501 agagttttca aaagaagttt ataagcattt agatgatgat attgaagaaa atttagaagt
     7561 agaaaaatac gatattttaa acctttatgt gaaatttatg tgcgagcaat ttagcttttt
     7621 aaaggatttt aattataaat ttggtgttga ttgcacaaat ggtgcggctg gagtggtgat
     7681 aaagccttta atcaaggctt taaatttaaa agctcatgta atgtttgcag agcccgatgg
     7741 acagtttcca aaccatgctc cagatcctac agaagaagaa aacttaagtg cgattagaga
     7801 atttttaaat caaaatcaag attattcttt ggcttttgct tttgatgggg atgctgatag
     7861 aatggttgct ttaagtaaaa ctcatgtatt ttgtggggat gagctttgtt atttgtttgc
     7921 taaagatatc cctaatccac gcattttagg tgaggtaaaa tgttctaaaa atctttttga
     7981 tgaagtggct aaatttggaa ctatttttat gggaaaaaca ggacattcta atatcaaaaa
     8041 aatgatgaaa gaaaaagata ttgatttagc tgctgaagtg agtgggcata ttttctttaa
     8101 acatagatat tttggttatg atgatggaat ttatgcattt ttaagagcct tggagcttgt
     8161 ttataaaggt tttgatctag aaagtatgat taaagcttta ccaaaacttt atactacacc
     8221 tgaaattaaa attcctgtaa atgaagaaga aaaattcaaa cttgtggaag aatttcaaaa
     8281 agagattgaa aaaggagctt taaaaggtgt taaaagtctt tgtgaaattg atggagctag
     8341 gatagatttt ggcgatggat gggctttact tcgtgcatct aataccagcc cttatcttat
     8401 cacacgcttt gaggcaacat ctttagaaag agcaaaagag cttgaaagta tggtatttac
     8461 tttgtttaat gatataaaag ctagatttaa gaattgatga gataatattc cgcgatttaa
     8521 tttattttaa aaaggaatta aaaatgaaaa aaatacttat tttacttaca ctatgtgctt
     8581 ttgcttttgg tgcaagtgaa tgtgatagaa aaatcgatcg tatcaataaa gaaatcagtt
     8641 tttctaaagc gcataatgat acagctagaa ctttaagctt agagcttgct ttaaaacaag
     8701 tacaaaatga ttgtgctaaa gatcctatgt tttatgataa aaagttagaa gctaaaaaac
     8761 ttaaagaaca agaagtggaa aaaatcgaaa aagaacttga tgctttaaaa gaacaaaaag
     8821 attatatgag taaggctgag tataaagcta aaaaagaagc tttaaaagaa caaaaagaga
     8881 aaatcaaaaa agaaattaaa gaatatatcg ataatctcta aaaattaaaa agactaataa
     8941 attttagcct ttttaaaccc tacctttttt aagattttct aataattctt ctatattata
     9001 aattcctctg tgttctggtg ttaaaagatg gattaaaata tcaccaagat caatcacgct
     9061 ccattcttca ctactatcta tgtttaaaaa ttcctcacct ttggctttaa gtcgtgtttt
     9121 aagctcatcg atcaaagata gagcgtgtct ttctcctaaa gtagctgcaa taatgacata
     9181 ttttacaaag tattcttgct cgctcatgtc aatggttttg atattttcag cttttttttc
     9241 atctaaaatt ttaacgatta aatctattct ttcttgcatt attgtccttt aatttttgaa
     9301 attgtatcaa tttttttgta atttttcata atattttttt acttcatctt taatttcttc
     9361 acaaacctca tttgtattta aagtgtcgcg tatgaaagaa gaagcgattt ttttattggt
     9421 ttttaaatct ttgaaattct taggaattcc tatatcattg cgattagcaa taacaaattc
     9481 tactaaagaa ttgagttttt caaaatcatg ccaaagatga agtttttcta aatgatctgc
     9541 gccaattaaa agataaaatt tactaggatt ataaagctta taaagatact taacactttc
     9601 tatgctagga acagggcgtt tttgcctgat ttcaaaatcg caaatttcaa cttttggcaa
     9661 atgtccccaa agttttttaa cccataagaa tctttgcttt tcatcagcac taaaactttg
     9721 tttaaaagga ttgatataag taggcataat aataagttta tcaatatcta attttcccaa
     9781 agcctctaaa acaacgctat tatgaccatt atgcggtgga tcaaaactgc caccaaaaag
     9841 tgctatcttc attaaaattt taaccttttt tttgtagaat attagcatta tattttgcaa
     9901 aaggaaatta aatggctgta aaagttgcta taaatggttt tggacgcata ggcagatgtg
     9961 tagcaagaat catcttagaa agaaatgata ttgagcttgt ggcgataaat gatactacgg
    10021 atattgaact tacaaaatac ctttttaaat acgatacagt acatggtgaa tttaaaggca
    10081 gtgttgatag tgaaggcgat gatttagtgg taaatggtaa aaaaatcaaa gtatttaaaa
    10141 gtcgcaatgt aaaagatctt gactttgcaa aacacggtgt acaaattgtt ttagagtgca
    10201 caggagcgca tttaactatg gcaaaatgtc aagaatttat agatatggga gtgcaaaaag
    10261 tgatcatgag tgctcctgca aaagatgata ctcctactta tgttttagga gtaaattcag
    10321 aactttacaa gggtgaaagc attatttcta atgcaagttg tacaacaaat tgtttaggtc
    10381 ctgtttgtcg tgttttacaa gataattttg gtatcgaaaa aggacttatg acaacaatac
    10441 atgcttatac aaatggacaa agtattattg atgctaaagc taaagataaa cgccgttctc
    10501 gtgctgcagc acaaaatatc attccaactt ctacaggcgc agcaaaagct atgaagcttg
    10561 ttatgcctga gcttaatggc aagcttcacg gacaaagtat gcgtgtgcca gtgattgatg
    10621 tatcaagcgt ggatttaacc gcacaactaa gccgtaaagt tagcaaagat gaaatcaatg
    10681 aagcttttag aaaagctgca actacaaatt taaaaggcat tttaatggta gatgatgatg
    10741 aaagagtttc aagcgatttt atcacttgtt cttatggagc aattgtggca agtgatttaa
    10801 ctcaagtgat tgcggatgat tttatcaagg tgattgcttg gtatgataat gaatggggct
    10861 attcaagtcg tctagtagat atggcagtat atattgcaaa taaggcttaa tcatgagtga
    10921 tattatttct ataaaagaca ttgatttagc taagaaaaaa gtttttataa gatgtgattt
    10981 taatgttcct caagatgatt ttttaaatat cactgatgat agacgcataa gatcagctat
    11041 tcctacgata agatattgtt tggataatgg ttgtagtgtg attttagcct ctcatttagg
    11101 gcgtccaaaa gaaattagtt ccaagtattc tttagaacct gttgctaagc gtcttgctag
    11161 acttttagat aaagaaatta ttatggcaaa agatgttatc ggcgaagatg caaaaactaa
    11221 agctatgaat ttaaaagcgg gtgaaatttt acttcttgaa aatttgcgtt ttgaaaaagg
    11281 cgaaactaaa aatgatgaaa atttagccaa agaacttgct tctatggttc aagtttatat
    11341 caatgatgct tttggagtat gccatagagc acattctagt gtagaggcga ttactaaatt
    11401 ttttgatgaa aaacacaaag gcgcaggatt tttactccaa aaagaaattg attttgcaag
    11461 caatcttatc aaacatccag cacgtccttt tgtcgctgtt gttggaggtt caaaggtaag
    11521 tggaaaactt caagcattga caaatttatt accaaaggta gataaattaa tcataggcgg
    11581 aggtatggca tttacttttt taaaagcttt aggttatgat ataggaaatt cacttttaga
    11641 agaagaactt ttagaagaag ctaataaaat tcttaccaag ggtaaaaatt taggagtgaa
    11701 aatttatctt ccagtagacg ttgtagccgc tcctgcgtgc tcacaagatg cgccgatgaa
    11761 atttgttcca gcgcaagaaa ttccaaatgg ttggatgggt ttagatatag gacctgcgag
    11821 tgtgagactt tttaaagagg tgatttctga tgcacaaacg atttggtgga atggacctat
    11881 gggtgttttt gaaattgata aattttcaaa aggtagcatt aaaatgagtc attatatcag
    11941 cgaaggacat gcaacttctg ttgttggagg cggtgatacg gctgatgtgg ttgcgcgcgc
    12001 aggtgatgca gatgaaatga cttttatttc cactggaggt ggtgcttctc ttgaacttat
    12061 agaaggtaaa gaacttccag gcgtaaaagc tttaagatct aaggaaaatg aatgatcttt
    12121 gctgcaaatt taaaatgcaa tcacacaaga gcaagtttta aaatttatgc tgaaatttta
    12181 aataaaacta tgggagcaaa atgtgatgat attatcgttt tcccacctag tgtagcattt
    12241 ttagaaaatg aaaataactt catacaagga gcgcaaaatt tttatccttg tgttaatggt
    12301 gcttttacag gcgagcttgg aaaagagcat ttggacgaat ttgggatcaa atgtgtttta
    12361 atcgggcatt ctgaaagaag agctttagga gatgaagaat ttattaaggc taaatttgat
    12421 tttgctaaag agcatggtta taaaattgtt ttttgtatag gtgaaaattt agatacaaaa
    12481 aattcaggca agactttaga gtttttaaaa aaacaacttg aaattattga tttaaattat
    12541 gaaaaactca tcatcgctta tgagcctatt tattctatag gaacgggagt gagcgcacaa
    12601 agtacagata tcgctaaagt gcttgaattt ttagcgagtt taaccaaggt acctttgctt
    12661 tatggtggaa gtgtgaatga aaataatatc aaagaaattt taagtgtaaa tcattgtggt
    12721 ggagttttga taggctctgc agctttaaaa gtagaaaatt ttataaaatt aatcaaagga
    12781 taaaagatga ttatgaaggg taaaaaaggc cttattgtag gggttgcgaa taataaatct
    12841 atcgcttatg gcatagcaaa agcatgtttt gatcaaggag ccgagcttgc ttttactttt
    12901 ttaaatgatg ctttaaaaaa acgcgtagaa cctatagcac aagagtttaa ttctaatttt
    12961 gtttatgagc ttgatgtaaa taataacgag catttagatt ctatcgctga aaaaatcaaa
    13021 aaagatttag gcgagattga ttttgtagtg catgcggttg cttttgctcc aaaagaagct
    13081 ttagaaaatt cttttttaga aacttcaaaa gaagcttttg atatagctat gcaaacttct
    13141 gtgtattctt tactttcttt aacacgtgcg gttttaccta ttttaaaaga taagggttcg
    13201 attttgactt taagttatct tggtggggtt aaatatgtac ctcattataa tgttatgggt
    13261 gtagcaaaag ctgcacttga aagttctgtg cgttatttag caagagattt aggagtaaaa
    13321 ggaatccgcg ttaatgctat ttcagcaggt cctattaaaa ctttagcagc aagtggaata
    13381 ggggatttta gaatgatttt aaaatacaat gaaatcaatt ctcctttaaa acgcaatgtt
    13441 agtatagaag atgtaggaaa ttcggctatg tatttactta gcgatttggc aaatggtgtt
    13501 acaggtgaaa tacattatgt tgatgcagga tataacatca tgggtatggg tgatgttgaa
    13561 aaaaatgaag aagggcaaac tgttctttgt tgggataatc aaaaaggata aaagatggca
    13621 aagcttagca atgaagaatt aaaaaatata cttgaagatc gcattaaaaa acttgaaaat
    13681 tctactttaa aagaggataa ggttatcaat gaagaaagtg taaaaattct tgctaagcac
    13741 ttatctttag gtaatgaaat tccagttctt gcacaaagat tttttcaaat cgcacctaaa
    13801 acaaagttag tatggcttca tctttgtgaa tgtacagggt gtagtgagag tttgttgcgt
    13861 tctgagttgc caagttttga tgagcttatt tttgattttt tttctttaga atatcatgaa
    13921 actttaatgg cagcaaatgg cactaaggct gaagagcttt tagaacatgt tttagaagaa
    13981 gattttattt tagcggttga aggtggtgtt gcagccattg ataccttttt tcttactata
    14041 ggagcgcaag gagagagtgg ctatgaaatt ttagacaaac tagccgctaa agccaaggct
    14101 atctttgcag tgggtacttg ttcaagttat ggtggtattc aagctgctta tccaaatcct
    14161 agtaaaactt gtggtattag cgaagtttta agtcagaaag tagtaaatat cccaggttgt
    14221 cctccaagtg atataaatat cattgcgact ttaagttttt ttgctttatt tggagttttg
    14281 cctgaacttg atgagcaaaa tcgtcctgtg tgggcttatg gtaaatgttt gcatgatatg
    14341 tgtgaaagaa aggcgaaatt tgaaagtggg atttttgctg aacattttga cgatgaagct
    14401 gcaaagaatg gagcttgttt atttaagata ggttgtaaag gaccttatac ttacaacaac
    14461 tgtcctaaag tgaaatttaa tgctaaaact tcttggccag tggctgcagg acatggttgt
    14521 atagcctgta gtgagaaaaa tttttgggat gagtttggga attatgaaaa acctatggca
    14581 aatatttctt cttacgctaa actttgcaat gaagagttaa aacaagaatt ttttctagaa
    14641 gagcaaatta aaattttaga acaaatagat tttgaatttg aaagcaatat aaaacttatt
    14701 ttacaaaata tagctaaaaa taaattaggt gcttcgcttg tagaaaatta taaaaaatcc
    14761 tttgagaaaa actatgcttt tatagaacaa aattttgatg aaaatcctat gccttcaaaa
    14821 gatttttgga aatatcttga gatgagtttt attttggtta aaggcgcatt tttaaaagat
    14881 aagaatgatt ttttaattgc ggcaaaaaat tatgctttta aacatgcaag tccttatgat
    14941 tttaagttaa atatgaatgc tgaaaaacca aagcttgatg tgagtaaatc ttttcgtatg
    15001 actttaatct atctttgcgg tgggcttgat tttgaaggta ttgcttatag tattttaaaa
    15061 gcttttgaag ataatatcac taaaatttca tcattaaaag caagttaatt taataaaatt
    15121 ttagcaatat gaagccctat aaaagctact atataagcac ttgtgcaggt aaaaagaaag
    15181 agaaagagag tatattttag ctttccactt tcttttgaaa aaactatagt tgctgcaaag
    15241 cagggattat aaatcattac aaataaaata aaagccactg cacttggtat aggtatgttt
    15301 ttagcgataa ttccttttaa atcattattt gtttcatcta catcttttcc tagtgaataa
    15361 agcacgccca tagttgagat catcacttct ttagcagcca aaccactgat taaagatacg
    15421 cttaatttcc aatctaactc aaggggttta aaaataggtt ctatgccttt gccaaattgt
    15481 cctaaataac tttgttctat agctctttct tgagcattaa aatcatttaa attttcttca
    15541 ctttttggaa aattactagc aaaccatata agcaaagagg ccaaaagtat gaaagttcct
    15601 gcttttttaa gatacatttt ggctttatta taaaccataa accaaattaa atgccaattt
    15661 ggcatacgat attttggcat ttccataaca aaaggttcat caagtccacg aaatgctgtc
    15721 attcttaaaa attttgcagc aaaaagtcct aaaatcgcac ctaaaatata aattccaaaa
    15781 agataatttc ctgctttttc acttggaaaa aaagcaccga taaaaagcac atatacagga
    15841 agtcttgccc cgcaactcat aaaattgatc acaaaaagag ttaaaagtct atctcttttg
    15901 ttcttaagag tgcgtgtagc cataaaagca ggtaccgaac aaccaaaacc agtgattagc
    15961 ggaataaagc ttttaccatg caaaccaaat ttatgtaaaa tcccatcaag taaaaaagct
    16021 actcttgaca tatagcctgt ggtttctaaa agagctatgc ctaaaaataa aatcattata
    16081 ttaggcaaaa aaagtatcac agcaccaaca cctgcgataa tcccatcagc caaagctgaa
    16141 gcgataaagg tattagaaat attgttttta acaaattcac ctaaggcatt aaagcctgat
    16201 tctatataat ccataggaat ttgccctaag ctaaaggtga gttgaaataa aagccacatt
    16261 aaaaataaaa atataggtaa gccaaagaat ttatggataa gtaaggcatc gatttttttg
    16321 gttaaatttc tttcttcttt tttgtgtgta ataatttttt ttgaaagttg attaataaaa
    16381 tataataaat cttctttttc tggacttttt tctggacttt tttcgcaaag cggagtgtaa
    16441 aattgggatc ttggaataaa tttactttca aataaaataa taattttttg cagcaaaagt
    16501 tctaaatttt cttttgtttt tgctgaaatt tcaacaactt gactttgaaa ttcttggctt
    16561 aaaacagaag tgtcaagctc tataccttct tttttggctt catcgcacat atttaaagct
    16621 aaaagcattt ttttattaag gcttaaaagt tctgcactaa ggataagatt gcgttctaaa
    16681 ttggtggcat ctaaaacatt aacaataaca tcatagtcat tttgatttaa aaaatgacgt
    16741 gtgatttttt cttcttcgct atatccatct aaagaataag ttcctggtaa atcaatgact
    16801 tcaaattcat agtttttgta aaaagttttt gcacttgctt tttctatagt aactccgcta
    16861 aaatttccta ctttcatatt agctttgcaa agcgcattaa taagaagact tttgcctaca
    16921 ttaggctgac ctacaagggc tattttgatt tttttcatat aagattcact tctatggttt
    16981 tagcttcatc agatcttagg ataacacaac ttgtatcaag ttctaccatt atggtggcat
    17041 tttttaaaga ggagtgaatt tttttcaagt ttttattttt aataaatcca aagcttaaaa
    17101 gtctattttt gagttctttg tgagcgttta aattgacaat aatagctttt tgtccatctt
    17161 ttaactcgtt taaagtcatt gtaattccta aattaataat aaatattata ataaaaaagt
    17221 gtaatgaaat tatccttctt gtaaaaagaa ggataaatat ttaaaaagaa aagtggttta
    17281 aattttctag attgatgatt tgatctagaa ttttgttagc tttagtatta tcaaggtaaa
    17341 tttgtgcatt ggctaaaaat ttagctttta attcttcaaa acttagtgga ttatcaaaat
    17401 tacctttatt gataaaaaca tctttttgga ttatgcgtcc atcttgcaaa ctggcttcta
    17461 aatgccctgg aaaatatttt ggaaagcctt gagatttcct ttttttgtaa ctgatttttt
    17521 tagcaaattc tagtacttct tcacgcttta aattttcata agattcaaga gtgattttac
    17581 catcaaagaa tcctagagcc attaaaaaag gcatggaaaa tttagcttca taagcactat
    17641 ttggagtgta ttttgcttcc aaaggatcgc agataaaaga aataggaact tcatctacaa
    17701 agcaatgaat acttttaatt tcatcagctt ttaaaccatc attttttaaa gcaatagcac
    17761 aatcaataag cccatgagca aaatgacaac ttggataagg cttgattgaa acttgcatgg
    17821 tttgccaaat ttcacctaag gctttgctaa gttctgtttt atcgcattct tcttctatac
    17881 caaaacattt aaagatatta tccctacctt caaaaatact caaaggtcca ctcatattgt
    17941 ttttagcaaa atgagctacc ataatgccgt ttttaatagc attggcaata tgtaaaactt
    18001 ttgaattaga tccattggat aaaaactcat taaccctact tgcaaaactt cctgcaagtc
    18061 ctaaagcatt gatgatttgt tctttgttaa gatccagcaa gattgcactt gcactcacgc
    18121 ttccaaaaat tcctgcaata gcagtagtat gaaaaccgcg cttatgaaaa gtgcctttac
    18181 ttgcaatgcc tactctagct gcaatttccc agcctattat aaaagctttg atgatttttt
    18241 ttgcatcttt actaacatga aatccataac ttaaacaaag tggagttaaa atcgcacttg
    18301 catgcaaaat cgcttctgta tgcgtatcgt caaaatctaa cgcatgagaa gcaatgctat
    18361 ctagcatggc tgcgtatata ggatctaatt tttgatcatt tacccaaata ggagtatttt
    18421 tttctgtgct taaattttca aaagctttaa aagcatttaa aacacattct tctttgcttg
    18481 ctgctatagc tgttccaagg ctatcaagca taagttcttt agccctttga acaactgtat
    18541 tagggatatt ttcatattta agattgaaaa taaaatccgc taaaatttca ctatagaaca
    18601 tgatttttcc tattttaaga tagcgctatt tttgattttt gctaaaaatt catctacaag
    18661 ttttggtgca tatcctacat aggttgttgc atcaagtaaa gcatcaattt ctttttcttt
    18721 caatacctta gatactcttt tatctgcaag taaaacttct ttaaaagttt tttgtttttc
    18781 tatacctagc atagcatttt cataaacaat ttcatgggca tgttgttttc cataatgatc
    18841 gcttaatgca aacataacac gctctgctaa aacaaaacca ttaagagtat ttaaattttt
    18901 aagcattttg tcttttttta cttctaaatc actaagagcg aatttcatat ttgctaaaac
    18961 cacagaaagc attaaaaaca tttcaggtaa aagcttccat tccattttcc aaacttgacc
    19021 atctctttca tgttcatgtc tttcaatatc gcttaaaatg gctaaatttg ccttaaaggc
    19081 attgcttact gtaactgcat tttcgcttac tgcaggattt cttttgtgtg gcatagtgct
    19141 tgatcctact tgtcctttgc caaaaggttc agcaacttca tcaatttcat tatgtgaaag
    19201 gattaaaatt tcatgagcga ttttgttaaa agttgcgttg atattgccta gtacaaaacc
    19261 aagttctata aagcgatcac gtgcgctctg ccaagaaata ttaggcacat caagtcctaa
    19321 attttctaaa gtgagttttt ctacttcatt gcactcatca cttaaacttg ctttagttcc
    19381 tacagcgcct actatactgc ctacataaag tcttttttca agttcaagta ttctttcaaa
    19441 atgacgctca agttcgctta accaaatagc cactttatgt ccaaaagtaa taggcaaagc
    19501 ctgaagtgct aaagttcttc ccatcatagc agtgttttta tgggttttag ctagtttcgc
    19561 taaggctttt gcgatagctt ttaattcgct ttttacaaga gtcattgctt ctttaaattg
    19621 taaaaccagt cctgtatcga tgatatcttg agtggttact ccaaaatgta catattcgcc
    19681 taaattatta tcgcaagctt tttctaatcc tcttacagta ggaactaaag ggtgtttggt
    19741 ctttttaaat tcagcaaaga taaagtccat atccataaat ttataatgag ctttttttgc
    19801 gatctcatca gctgcttttt tagggataat tttaagtttt gcttgtgctt ttgctaaagc
    19861 tgcttcaaca tcgagccatt tttgtatgcg gttttgttcg caaaaaatag cacgcatttc
    19921 ctgcgtgctc catgagtctg ctagtaatct atgatcaaat acgctaattc ctgtcatctt
    19981 atctccttat tttttaatac tatcaaaagc ttgtgttaaa tcagcaatta aatctttagt
    20041 atcttcaaga cctatatgaa atcttacaaa tggtcctctt gcacttaggt ctgttgcagt
    20101 tctaggtgga gtagttacgg tggccaagct ttcatatcca ccccagctag caccaattga
    20161 aaagtattct agtttatcta caaatttaat agcatcctct ttgttataac cttctgcaaa
    20221 ttctatggta atcataccat ttgcaccttt atgatcacgc atgaaaattt catgatttga
    20281 gtgggatttg agttttggat agaaaattgt tttaatttct tttctacttt gtaaaaactc
    20341 tacaatttca tcagcacttt tttcatgggc tttcattctt acatctagtg ttctcatacc
    20401 acgaagtact aagtaagcat catcaggact tgttgtaaag cctaaagctt ctggaagttt
    20461 gtcaaaattt ttccattctt tttcgttgat tactactata cccatggtta catcagagtg
    20521 tccgctaaga tattttgtag cggcgataac tgaaatatcc actccaagtt ctaaaggatt
    20581 tagaaaatat ccactagaat aagtattgtc aatagctaca gggatattat gcgcatgggc
    20641 aattttgcaa agttttggta aatctatgat ttcataaagt atagaacctg gactttcaca
    20701 taggataagc ttggtattag gtttgatttt tttcttctac atcacttgca tcagctttta
    20761 aaaaatcaat ttcaatgccc attttttcta aaaataattc gcaaatcgtt cttacaggcc
    20821 cataaattgc atcagtgatt aaaaaatgtg tatctttgct tgcatagttt aaaagcacca
    20881 tagctaatgc tgcaagtcct gttgggaaaa gttgtgctct ataaccaccc tctagagtgc
    20941 aaataagttt ttcaagttca aaattggttg ttgttcctct agctccataa cttaaaacac
    21001 gatctgtttt tcttaatcct ctgtattttt gccaagttgc gtgatcttta aaaagtatgg
    21061 ttgatgcacg cataagtgta ggattgactg atcttacttc agcgccttga tcgcctctgc
    21121 cacaatgaat aagtttagtt tttgagttca ttttttctcc tttttaaaga tagatataag
    21181 tcataataac atttacaata gccgctacaa gcataggaat agctgttctt ttaaccacgg
    21241 caaaaggact tactcttgca atagctgaga tagctaagat cgctagtgca ataggactaa
    21301 cacatcttcc aaagcccgtc atgatttgaa tcggtgctat catagtgata gtttcaactc
    21361 caaagtgttt tgctatattt gggataagtg gggcaaagct aaaaaatgcc gcatttcctg
    21421 aacccattaa gaaagcacaa accgcaagta agattgaaac agcgataata atagccaaaa
    21481 ctccaaatcc tgcatttttg caaaattcta ttaaagtatc tacaaaacct acagataaaa
    21541 gaccacttgc aaatacttga ccacaaacga tgagtgaaac tgtgataaca aataaatgtc
    21601 ccattccttt aaagaaaatc atcatagaat taagagtttc tactatactt ttatagcgta
    21661 tcatttcaaa aataatagcc acaaaagttg aaatcaccat tgctactgga acattcattt
    21721 taattgcagt gctagcagct gctttaactt cttcagcgct acttattccc attaaaacca
    21781 agatgctatc aagcacggaa ctaaatccta ggattaaaac caaaggaatt ataggtaaaa
    21841 tcgcataaat tctaggaggc tttttaagtt ctttttcttt accttcattt tcatttagtt
    21901 cttttttcaa tttcttgcgc attgaagaca aaattatctt ttttgtcaaa aaatttattg
    21961 caaagatata ttgcaatact tacagctata atgataggca aggttgtagg gagttgataa
    22021 tgaacaaaat aaattgcagg atcaacttca gctttttctg aggccatgat cacatttcca
    22081 cttccaggtc catgatcgat atattgacaa atagcaatca cacttaaggc agaaagtttt
    22141 gaaacaccag agcgtacaag tataggatac atagtaacca taagtaaaag tgccaagcct
    22201 gcgtgagaag ggatgaaaag aactaaaaat tgcacgataa aataagcaac tatgagtaaa
    22261 acataaggag attttacggc ttttaaaggt ttttcaaaaa ctttaaaaag tgcataagaa
    22321 gcccctacat gatccatata agcagaaaaa cctgctatag tcataagtgt aagtccaagc
    22381 tctgctaatg tacttgacat ggtttgatta aaaacttgaa aaatatcaaa aaaacctaga
    22441 tttaaagaat ctttggtaac aatgtgtgga gaaagtccaa aaatagcagc taaggaaagt
    22501 aaaagcaaac cacttaaaag cagtgccatg tgagcattga tttttttata aagcataaaa
    22561 acaagtaaaa aaacactaaa taaagaaaaa acaataccta gcatatttta tcctttttga
    22621 gcgatgatct ctatctctac tttagctttt tttggtagat cttttactgc aaaagcactt
    22681 cttgctggat aaggagcttt aaaaaattca gcataaattt cattaaatgc tacaaaatca
    22741 ttaatatcag ctaaaaagca agtggtttta accactttat cataactgat accattttct
    22801 tctaagatag caccgatatt tttcaaagat tgtttggttt gttctttgat atcatggctt
    22861 tctatttcgc ctgaatcagg gttgatagga agttgtcctg atataaataa aagtccattt
    22921 acttctctgt aagctgagta tggaccaatg gcctttggat agtttgacat gaattctcct
    22981 ttgttaaata tagattaagc agaatgcatt ttatcactac aataataatt tgtcaatagt
    23041 ttattatcat aataataaaa ttttattttt aagaaatgtt ttaaagtata aagagtagaa
    23101 tttaatatta tattaatttt ttattgaagg cagttttatg gatgagggac aaaaacaaca
    23161 atttataaag ttgacatatt ttttaggaga agttttaggt gagcaatatg agatagtttt
    23221 ccatgtaatt actgaagatg gggcctatat tgcagcaatt gctaacaatc acattagtgg
    23281 gagaagttta gattctccct tgactgtttt tgcaagtgag cttatgcaaa ataaaaaata
    23341 tttagaaaaa gattttttat gtgattataa ggctcttgtt ggaaaatcaa aattaattag
    23401 aggatctact ttttttatta aaaatcatga caaattagta ggtattttgt gtatcaatca
    23461 tgatactagc attatgagag atttaatatg caagatgatt gatttagaaa aaattggaga
    23521 tatgggtgat attttaggaa atattagttt ttctcaaaat gattcaagta tagaaacatt
    23581 aagtcactcg atagaggata ttttagttca aagcgtagat tctagttatt taaattctga
    23641 ttatcaatta agtattactc aaaaagaaga aattgctgaa aagctatatg aaaaaggtat
    23701 ttttaatata aaaggggcgg ttcctatcgt agcaaaattt ttaaaaattt cagaacctag
    23761 tgtctatagg tatctgaaga aatttaaaaa ataactaaaa ttttttgata aattttagta
    23821 tttttaggct tattttcttt aaaaaattat ttttagattt tttgagtaaa aattctgcca
    23881 catctttgcg tccaaacata atagcaaaag tataaggtgt cattcctaaa ccattgtttt
    23941 catcaatatt tgctccatat ttaactaaaa gttcacacat aggtaagtat cctttaaaac
    24001 aaactcccgc taatggggtt tgtccacgat cgtttttttc atctactttt gcaccttttt
    24061 ctaaaagcat tttagcgctt tcataagaat tattataagc tgcaagcata agcaagctat
    24121 cgcctttatg agtttttaaa tttacattta aacctgcttc tatcatgatt ttaagatttt
    24181 cacattcatt atttcttgca aaattaaaag ccattttgca aagctcttca aatctttttt
    24241 cttcttctaa actaagagtt gtcattgttt ttccttaatt attataatct ttagtttgcc
    24301 accaaaagtg gcaagtaaaa attatttttc taaagctttt ttaattcctt ttgcataatc
    24361 aggtgaaatt ttttcaaaat gttctaaagc tctagtgata attttttcat caactccctc
    24421 catagaagcg gcgatattat gaaaaagttg agttttttga tcatcattca taagattaaa
    24481 taaagctctt ggttgagtat aaaagtcatt atctagtgga gcatatcttt gtgctacgcc
    24541 ttctaagact aaatcaggtt caagatagct tttgtcttct tttgggctat tatcatagct
    24601 gtttggttca taataagctg catcattttt ataactatca aaattcatag caccagcgac
    24661 attgtaagta ttcacttcgc tttttgcacg atttacgggc aaaagatgat aattagttcc
    24721 tattctatat ctttgtgcat caggatatga aaaaattcta gcttgcaaca ttttatcagg
    24781 gctaaagcca attccaggaa cgatattgct tggactaaag gcagcttgtt caacttcatt
    24841 aaaataattt tgaggatttt tgtttagaat catttcgcct atatccatca aaggcacaag
    24901 actatgaggc caaatttttg ttaaatcaaa aggattaaat ccaagttttt ctatatcttt
    24961 ttcagcaaga atttgaactt gaactttcca ttttggaaaa tctttatttt ctatagcatt
    25021 atagagatct ctttgatgac tttctctatc ttttgctata agctcggcag cttcttggtt
    25081 ggtaagattt ttaatccctt gttgggtttt aaaatggaat ttcacccaaa atctttcatt
    25141 tttatcatta ataaaactat aagtatggct tccaaatcca tgcatatgac gataacttgc
    25201 aggaattcct ctatcgctca taagaatggt tacttgatgt aaactttcag gacataaact
    25261 ccaaaaatcc caagcagcat tattacttct tagatgagtt cttggatctc ttttttgagt
    25321 atgaatgaaa tcaggaaatt tatacgcatc acggataaaa aaagttggag tattatttcc
    25381 tactaaatcc cagtttcctt ctttggtgta aaatttaatg gcaaatccac gtacatcacg
    25441 ctcagcatct gctgcacctg cttcacctgc aacagtagaa aagcgtagga aaagaggagt
    25501 tatttctcct ttttgaaata tttttgcctt agtataagca gataaatcag cggtgatttt
    25561 tatttctcca taagccccac ttcccttggc atgaacggtt ctttctggaa ttctttctct
    25621 attttgatga gcaagttttt caagcaaaag ataatcttgc ataagcaaag gtccttttgc
    25681 gcctgcactt aatgaatttt ggttatcggc tataatgttt ccaaaatcgt tagtcaattt
    25741 tttcattg
//
LOCUS       DARGEY010000011        25019 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.011, whole genome shotgun sequence.
ACCESSION   DARGEY010000011 DARGEY010000000
VERSION     DARGEY010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25019)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25019)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25019
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.011"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..977)
                     /locus_tag="SF008_000428"
     CDS             complement(<1..977)
                     /locus_tag="SF008_000428"
                     /inference="COORDINATES: protein motif:HMM:NF022646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HEG8232732.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLTLEINLLAKENDKAEIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLHKNDFVKFFKAYLPNLEAKEPATLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNFCDENLKILLRNNATEHFDKAIAHIEDDYLGSHWLGSFA"
     gene            complement(987..1940)
                     /locus_tag="SF008_000429"
     CDS             complement(987..1940)
                     /locus_tag="SF008_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HEG8232733.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPYLSFFENKNATLMALIIGIIISSVVACFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            complement(1927..2619)
                     /locus_tag="SF008_000430"
     CDS             complement(1927..2619)
                     /locus_tag="SF008_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HEG8232734.1"
                     /translation="MEWLLLASIPLIVSGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
     gene            complement(2779..3348)
                     /gene="efp"
                     /locus_tag="SF008_000431"
     CDS             complement(2779..3348)
                     /gene="efp"
                     /locus_tag="SF008_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEG8232735.1"
                     /translation="MASYSMGDLKKGLKVEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDEDVGE
                     AKKWMIDGMMVDVLFHNGKAIGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            3464..3787
                     /gene="rnpB"
                     /locus_tag="SF008_000432"
     ncRNA           3464..3787
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="SF008_000432"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(3784..4059)
                     /locus_tag="SF008_000433"
     CDS             complement(3784..4059)
                     /locus_tag="SF008_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232736.1"
                     /translation="MKQWLNNFKLALIQEDVDKLEILLDELDVKNFVKNLVKSQPSEE
                     MLKENVKDIFYQLQALLQEAIVLIDQKKKTKAFEIQKFQKALTYVRS"
     gene            complement(4040..4426)
                     /gene="fliS"
                     /locus_tag="SF008_000434"
     CDS             complement(4040..4426)
                     /gene="fliS"
                     /locus_tag="SF008_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HEG8232737.1"
                     /translation="MQNSLAYNAYSQNQAGIESPQKLIEMLYEGILRFCSRAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLDYEKGGDVAHYLSGLYTREIQLLSLANLENNEER
                     INEVINVTKGLLEAWREVHSNETMAQ"
     gene            complement(4437..6365)
                     /gene="fliD"
                     /locus_tag="SF008_000435"
     CDS             complement(4437..6365)
                     /gene="fliD"
                     /locus_tag="SF008_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HEG8232738.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSKGLANDSGFINANLTGTTDLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDSNGKYTSDSEA
                     ETIFKNLGWELDTTSSIDPAKDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTVT
                     DLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGTK
                     GTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAGT
                     LSFDSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKQGSLNQYLDSSGTGNKGL
                     DFKPGDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKVE
                     SYDQNGVKGFKLNFSGDGSSDFSIKGNATILKELGLSDVNITSKPIEGKGIFSKLKAT
                     LQEMTGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKLN
                     QQLSTITNMINAANNSNN"
     gene            complement(6368..6733)
                     /gene="flaG"
                     /locus_tag="SF008_000436"
     CDS             complement(6368..6733)
                     /gene="flaG"
                     /locus_tag="SF008_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella length regulator FlaG"
                     /protein_id="HEG8232739.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASLNIQTDRSQGQEGDDRQ
                     QRGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
     gene            complement(6890..8692)
                     /locus_tag="SF008_000437"
     CDS             complement(6890..8692)
                     /locus_tag="SF008_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HEG8232740.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNEKALNLAFGRDYEEVAEEISKLTKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPILKTWEDDAGKFITMGQVYT
                     QNLDKTQNNLGMYRLQMSDKNELLMHWQIHKDGANFYHEYKNAGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPAKITPCENGIFIPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYMLDRFNTKKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLELFKTKVELLNLKQFYKESKSPIVCILLDKKEKIEQSFDKLLEFK
                     KHFRILVFLDAENKLENSYMLVWRVVNNIDAKRDIFIKEERLGVDASAKGEAEGYLRA
                     WPKQTDCTKSVIEDLILRNILENNPDLFNKFEIF"
     gene            complement(8689..9612)
                     /gene="hemC"
                     /locus_tag="SF008_000438"
     CDS             complement(8689..9612)
                     /gene="hemC"
                     /locus_tag="SF008_000438"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEG8232741.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLDIISLRGNVNSRIEKLKNNDF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILELLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDEICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            complement(9609..9998)
                     /locus_tag="SF008_000439"
     CDS             complement(9609..9998)
                     /locus_tag="SF008_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HEG8232742.1"
                     /translation="MNYKLSLSPLFVLEIIASILFIVFFGFGNFLFFILLSMIFGAVL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLVFPGIITSVFGIFVFFFGIALKLITK
                     SKYQYTKQEYQNSNEEIIDVEIIEDRK"
     gene            complement(9995..11704)
                     /locus_tag="SF008_000440"
     CDS             complement(9995..11704)
                     /locus_tag="SF008_000440"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEG8232743.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEVKAQNACSALELVDASEEELEKAGLV
                     AGFIGFVGLKDIDFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVATEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVVGKGLEKNEIELIQREGLIKELIKTDELMEILKK
                     KVL"
     gene            complement(11688..12986)
                     /locus_tag="SF008_000441"
     CDS             complement(11688..12986)
                     /locus_tag="SF008_000441"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEG8232744.1"
                     /translation="MYYCISFTHKNTDIALREKLSFSNEAKKSEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNS
                     ISVASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEELSYKRYFFDIAVPR
                     DIDINENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRKTSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTVNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            complement(12986..13879)
                     /locus_tag="SF008_000442"
     CDS             complement(12986..13879)
                     /locus_tag="SF008_000442"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HEG8232745.1"
                     /translation="MQKIDELIKQFLEELGYEPILNMLSNVKSGKKLRSKLLLAIADE
                     SEIAFKICAAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFASIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKARKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            complement(13893..14429)
                     /locus_tag="SF008_000443"
     CDS             complement(13893..14429)
                     /locus_tag="SF008_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HEG8232746.1"
                     /translation="MFKISPYLICIFFIFSNVLASEPTFDYTYKFILKKDERASVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
     gene            complement(14432..14695)
                     /locus_tag="SF008_000444"
     CDS             complement(14432..14695)
                     /locus_tag="SF008_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HEG8232747.1"
                     /translation="MDFFDEMFNKTPKEKFIEIIQNGNLGALEKVFEEFFADHIAMVE
                     LLEKQGLTEMDVKNFILENGDFIEERQNDIYIELGAKILGHEG"
     gene            complement(14834..15391)
                     /locus_tag="SF008_000445"
     CDS             complement(14834..15391)
                     /locus_tag="SF008_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HEG8232748.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVP
                     AKTRDANAKAFDLGVKYATQAKPHS"
     gene            complement(15388..16233)
                     /locus_tag="SF008_000446"
     CDS             complement(15388..16233)
                     /locus_tag="SF008_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEG8232749.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKAKFESMDFEERKDKFPTGILHEDNSQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(16234..17358)
                     /locus_tag="SF008_000447"
     CDS             complement(16234..17358)
                     /locus_tag="SF008_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HEG8232750.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGISVAIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASIAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIKVYNRKKFEGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGVIVKKNMERLIGKIKNNQEDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAIQRLREQGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(17367..17678)
                     /locus_tag="SF008_000448"
     CDS             complement(17367..17678)
                     /locus_tag="SF008_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEG8232751.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECETHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(17692..18561)
                     /gene="sucD"
                     /locus_tag="SF008_000449"
     CDS             complement(17692..18561)
                     /gene="sucD"
                     /locus_tag="SF008_000449"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEG8232752.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGVTPHKG
                     GQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKAIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(18571..19734)
                     /gene="sucC"
                     /locus_tag="SF008_000450"
     CDS             complement(18571..19734)
                     /gene="sucC"
                     /locus_tag="SF008_000450"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HEG8232753.1"
                     /translation="MNIHEYQAKAIFADNGIPTLKGKVAFSVDEAVANAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTTEGDFYALDAKCSF
                     DDSALYRHPEIAELRDITEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASPETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKTILDNSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(19735..20637)
                     /locus_tag="SF008_000451"
     CDS             complement(19735..20637)
                     /locus_tag="SF008_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEG8232754.1"
                     /translation="MKITVIGAGNVGSSVAYALILREIANEIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCTKDYTHTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFSSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSSVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFDDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMLESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     KMDLSLQEKDKLEKSLIKYQYKGE"
     gene            complement(20634..22838)
                     /locus_tag="SF008_000452"
     CDS             complement(20634..22838)
                     /locus_tag="SF008_000452"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEG8232755.1"
                     /translation="MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGR
                     ILAAFSEYLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYAKEIKASKDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYNEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNIA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLKGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCSNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
     gene            complement(22955..>25019)
                     /locus_tag="SF008_000453"
     CDS             complement(22955..>25019)
                     /locus_tag="SF008_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HEG8232756.1"
                     /translation="FQGRASGELLDFNASISYKNKNLAYKIEDLNIRNITEIFKRVNK
                     RIELPQSLNLWVAYRAKGEFYHLDYLQGFIDFTKDNYYLDNISASGYVNNVKVRLDDK
                     MNAIEIPKLDLNLNKQKLDFVFNKAFYNGADLSSSKVYLYDLFDEKKVGIYLRIKSDN
                     LKFDEKLAKALEDYHFSLPFYQKSGKIKSDLELKIDFHDKGEISYSGILALENASISL
                     ADFNITKAFVKLNQNDLNIENASVKNGFLEADFNAKFDLQKQQGNFNTQISRLYFDNG
                     ELLDLKNQNVEVKLDYSQNVNISIPQWNLILNFKDGLEANLSNPKILFSFSPLLKKFG
                     FIDAKNVYYKTLNFEDFNASVNDAYFKNNLLINGQTPYENDSFDIVKNKGIMEIHTQS
                     DTASAKISSNNKEIHLKNLSYIYRKGSNSSNSTFDISTNTQNISFGGANVALILPDSN
                     KTLAFDRVEADLKGNALDLKGSRGNAKFELYYSSNDVNLNVSNIDDNYLNEFLQKQAV
                     QDGVFNLSIKGSGLEYFDGQIDFKNTYVKDLKGVNQLISFIDTVPSLLMFKSPTFNQK
                     GLSLYDGKIIFNRKKDLLSVLAINLNGDSVDIYGLGSANLRLNTVDFSLELKTLKSAS
                     EAISKVPILNYVILGKNQEISTNLKIDGSIDDPKFHTEILTDTLKTPFNLIKNIIQLP
                     ANLLN"
BASE COUNT         8231 a         4873 c         3019 g         8896 t
ORIGIN      
        1 aaagcaaagc ttcctagcca atgcgaccca agataatcat cttctatatg agctatggct
       61 ttatcaaaat gctctgtagc attatttctt aaaagaattt ttaaattttc atcgcaaaaa
      121 tttgaaagta ttttaaaaca ccaagcacga cttaaattta gcccatctag atgtgctatt
      181 ttaccatcgc tcctatcact cacactcaca ggggtaaata aagttgcagg ctcttttgct
      241 tctaaatttg gcaaatatgc tttaaaaaat tttacaaaat catttttatg taaaacagca
      301 cttaaaagca ccgcttccat caaaacagga gataaaaact catctccaca aggctctaaa
      361 gcttgcatat ttttatcatt taaaaaccac tttttagcac tttggatgat gcaatactcc
      421 aattcttgat cttttttaaa tcttgcatat tctaaagcaa aatacaaagc aaaagagcta
      481 ttaaaatggg ttccaactcg tataggataa tccatcttag gtaaaaactc cttaaattct
      541 ttaacaaaga aatcagctat gccttctaaa ttcttagccc aaatttcagc tttgtcattt
      601 tctttagcaa gtaaatttat ctccaaagtc agttttaaaa accatcccca tccataaggt
      661 ctttcaaaac ctttgtgtgc agggttttga agatatttaa gctctccttc tgctttttct
      721 ttgctaaatt gagaatctag agctttgatg atttcatcct ttggagcaaa atgagaaaaa
      781 tcttttaaaa ttttcaccaa aagccagtga gaatgcacgc tagaatgcca atcataagaa
      841 ccataaaata taggatacat aagttttggt ggtttaatat cattgatatc attaaaagaa
      901 tgtgtaattt tatttggcaa ttctctaaaa atattttcta gtgcaataaa gctaaattgt
      961 tttataaatt tttccattgt ttctccttaa aatctaaaag ctaaaaaata cattaaaaag
     1021 atattagcca caagcaaaac aagtcctgac ataaactggg ctttaattac gccattttta
     1081 tcatccaaat ttaaaagtgc tgcaggaact atattaaaat ttgcagccat aggcgtcatt
     1141 aaagttccgc aaaatccact aagcattcca atcgcaccta taatagcagg atttgcatgc
     1201 atttgtatga ttaaaatcgg caaagcaata gcagcagtaa tcacaggaaa agctgcaaaa
     1261 gcattgccca ttactatagt aaaaagcgcc atagcgatac aatacacagc tactgcaata
     1321 aaagcattat ctaaactaat ataactagat aaaagtttag atacttgatc gcccattcct
     1381 gtagaaacaa aaactacccc aagtgtagcc aaaatttgcg gtaaaagcgc tgcccaacta
     1441 atgtgatcca tagtatgtgc tgcatcttta acagctcttt taggagaagc cttaaacata
     1501 aaacaagcaa ctactgaaga aataattata cctataatca aagccatcaa tgtagcattt
     1561 ttattttcaa aaaaactcaa atagggaaat aaaaaagtcc caataagtgt aatcaaagga
     1621 accattaaag cagggataaa aagtttattt ttataaatat ttgcatgttt tatctcgtat
     1681 tctttttctt ctttgctaac ttcaatcttt gctggtttta ataaattaaa tcctgctata
     1741 agtgctagta aaatcactat acaacccatc acaaaatgag gcaaaactcc tgctagtaaa
     1801 aaagtaaaac tataacttat ccagaatacc ccgccgctta ttcttgattt tatatcttta
     1861 gcttgattag aaaaacttaa aattccaaaa actaaaaata aaattcctac aatataataa
     1921 agcaaatcaa gacttatcat cactcaaccc tttataagtt ttttctaatc ttttatcaaa
     1981 taaataaagt ctagaacaat ggataattaa agccaaaatt ccagttggta tagcccaaac
     2041 tgataaatgc aatggctcaa caataatacc attgctctca taaaaagctt taataaataa
     2101 aatagaatgc acggctataa aaatatcctc tccaaaaaat acagcaacat tatccgttcc
     2161 cgcagaaaaa gctttgattt tttgactatc tttatgtgtt aagtttttaa atttaagctt
     2221 agctgcagct tctgccatag gggctattaa aggtcttatc atctgtgcat gtccgcctaa
     2281 agataaaagc cctaaagctg cagtaacttg tctaaaaaca aaataacaca ttaaaattcg
     2341 tcctgtactg gcaactttta ttttggatat taaattttta gcctgctctc ttaagccttt
     2401 gcgttccaaa acagcaagta aaggtaaaat aagccaaatt atagcaacat agcgattatc
     2461 tacaaaagat tttcctatat cactaacaac cttaacaaaa tcaaaacctg aaacaagtcc
     2521 agcataaatt ccaactgaag ttaccactaa aaaggggtta atctttaaag caaaacctga
     2581 aacaatcaaa ggtatagaag caagaagtaa ccattccatc aaccatctcc acaatatgaa
     2641 ttagaaatat tatagaaatt ttaaattgaa gaaaagttta aaaaaatatt tttaagaatg
     2701 gaatgagaaa ttaagtaaca aaataaattt tatataaatt taaaaaagcc ttggaatagt
     2761 ccaaaagctt tttttgtatt atttgttcgc tctttctata tactcaccac gcacggtatc
     2821 aacgcgtata acttcacctt ctaacacatg aaaaggaatt tgcactactg cgcctgtttc
     2881 caatgtagcc ggttttttat ttgatccttg agtatcaccc ttaaaatttg gagctgtttc
     2941 gatgattttg agttcaacaa cttgtggaac ttctacgccg atagctttac cattatggaa
     3001 aagcacgtct accatcatac catcaatcat ccattttttt gcttcaccca catcttcatc
     3061 actaattgct acttgctcat aagtttgcgt atccataaat tgacaatttt caccatcatc
     3121 ataaagatac tgcatagtct tatcttctaa atttggagct tcacatttat cccctgcatg
     3181 gaaagttttt tcaagtacct taccatcgat aaaagatttg attttaatac gcacaaaagc
     3241 aggaccttta cctggtttta catgctgata ctcaactatt ttaaaaggaa ttccatcaat
     3301 ttctacttta agtccttttt ttaaatcacc cattgaataa gatgccataa atttccttta
     3361 gtaaaaaaaa taaaaggtaa ttctatcaaa ttttaattga tatcacaata aaactgcttt
     3421 atttgataaa aaaataagca aaattacgtt aaaatctaaa cttaaagcat agtaaatgct
     3481 cgcttctttt ttagaagagg aaagtccgag ctgctaaaga caaacattcc atctaacaga
     3541 tggctagggc aacctaaggg atagtgcaac agaaagaaaa ctaccacatt aaagtggaaa
     3601 aggtgaaacg gcggagtaaa agcccaccag cgattttggt aacaatttcg gctatgtaaa
     3661 cccaatgtgc agcaagaagg gatggttagt gtctttgttt taacccttcg cttgattttg
     3721 tttgcaaaaa caaaactaga taaatgagca ttcttgacag aactcggctt atcgctatgc
     3781 tttttaagat ctaacatagg tcaaagcttt ttgaaatttt tgaatttcaa aagctttagt
     3841 ttttttcttc tgatcaatca atacaatagc ttcttgcaaa agagcttgaa gttgataaaa
     3901 tatatctttt acgttttctt ttaacatttc ttctgaaggt tggcttttta ctaaattttt
     3961 aacaaaattt ttcacatcaa gttcatcaag caaaatttca agcttatcaa catcttcttg
     4021 aattaatgca agtttaaaat tattgagcca ttgtttcatt actatgcact tctctccaag
     4081 cttctagcaa acctttggtt acattgatca cttcattgat tctttcttca ttattttcta
     4141 aatttgctaa agataaaagc tggatttctc ttgtataaag cccacttaaa taatgtgcca
     4201 catctccacc tttttcataa tctaaagtat ttataagctc tataaaaatg gctgtggttc
     4261 tttttacaaa atacactctt tgctctatat cttcatttct tatagctact ttagctcttg
     4321 aacaaaaacg caaaatcccc tcataaagca tttcaataag cttttgcgga gattctatcc
     4381 ccgcttggtt ttgagaataa gcattataag ctaaactatt ttgcatcttt ttatccttaa
     4441 ttattagaat tatttgctgc attaatcata ttagttatag ttgagagctg ctgattaagc
     4501 ttatttaaga tactttcata ctgcaaccat tgatttgcca ttgtatcata tcttgtatca
     4561 atcatagcct gagttgagtc tttagaggta tttaatgatt taatatcatt tgtcaaactc
     4621 tcatcatatt ttgtaattga accatctttt ccagtcatct cttgcaacgt ggcttttaat
     4681 tttgaaaaaa tacctttacc ttctataggt ttagaggtta tatttacatc agacaaacct
     4741 aattccttaa gaatggtagc atttcctttg atggaaaaat ccgaactacc atctccacta
     4801 aaattcaact taaacccttt aacaccgttt tgatcatagg attcaacctt aacttttaaa
     4861 ccttcaatac ctttgctgtt tatatgatta gctaaatttt gaagcaattc ttcctctgtt
     4921 tttcctgtta atttaaaatt agtaccatca gaatttttag ataaatcata tgtttgatta
     4981 ttaaaaacta tagtaaaatc tcctggttta aaatctaaac ctttattgcc agtgccacta
     5041 gaatcaagat attgattcaa acttccctgc ttaattactt ctcctgtgtg attaatgtct
     5101 tcgtatttag taatatttga aaaaaaactt tcagtagagt ctggatcttc tttaactttt
     5161 tgttcaaatt tagaagaatc aaaactcaaa gtgcctgcat catttaaact taagccaaaa
     5221 tcctgcatag aaagcataac cttagtgttc actttattac catttgcatc ttcagtagtt
     5281 ccatcaacaa cttgagaatc aaacaaatca gcaagaatgc ttgagcgtat tgaatttact
     5341 tcactgatgc cttgtaaagt tccttttgtt ccagtttcac tattatagtc agttgcagca
     5401 ttaagattgg ttactaaatc attataagca tccaccaaat cttgcatggc ttttgtcaca
     5461 ccttcaaaat cttgctgtac atcaaaatta atttcacctg ttttatttaa agttaaagtc
     5521 attcctacac caagatcggt aacagtgtta cttgatctaa acatcttaat accatcaagt
     5581 gtaaattctg cattttgcgc agtttggata tgcaaagaag catccttaat accataacct
     5641 tttttatcct tagctggatc aatagaactc gttgtatcta attcccatcc aagatttttg
     5701 aatattgttt ctgcctctga atcacttgta tacttaccat tcgaatcttt ttttcccgca
     5761 tagaaactta tcgcactgtc ttcgcctgtt tctttactgg ttaaagttaa gcggtaagga
     5821 gtgcctttct ctcctgtgtt tacaatctta gcaacaatct ctcctccact agcttcatta
     5881 attttatcag ctaaatctct ataggttgtg tttttatcta ccgtaacagt atattctttg
     5941 ccatttgaaa aaaaagtaag atcggtggtt ccagttaaat ttgcattaat aaaaccactg
     6001 tcatttgcta atcctttgct ttgatacaca tctttttgtg caagttgagt aacattgata
     6061 ttcatgcttt gtaaagcaac acccgaatta actgtaagac ttgctggagg attatcgcta
     6121 atacttccta caacttttct tttcgcaaaa accgtagcat cggctaatga tgaaacagcc
     6181 gtctgaaaac ttagtaattt agttttgatt tctgttaaat ctttttgttt ggttgtattt
     6241 tcttcaattt ttttagtata aggatcaata cgagcttttt gctctgcttc ttttaattta
     6301 tctatagtat cttgagttaa aaccccagaa ccaaatccta aactagatag actaccaaat
     6361 gccattttta actctcctta tcaaatatca ttcctatcac atccctaaaa tactcagcta
     6421 atctcatagc ttcttcgcta ggaatttgac ggatttccct tccagtgctt ttttcagtca
     6481 cgctaatata catagaaccg attttatcac tataaccaaa acgaacattg gtatctagag
     6541 aatccatttg ctcatttaac ttttttgtaa tatcagccaa cttttcactc acacctcgtt
     6601 gctgtcgatc atcgccttct tggccttgac ttctatcggt ttgaatgttt aaactagcct
     6661 gtgtctcact tgttctttgg ctaatgtttg ccaaagctgt atccatttgc ccatttgcct
     6721 tcgatatttc cattttaaaa tcctttttaa aatttcctat tgctagttaa aagcttatat
     6781 cgacaaattt ataaatttat gaacacctat aaagaaaatt ttatttttca ataataaaaa
     6841 aataataagc aaaaactgtg ccaaaatttt aaaataaatc tcaattatct taaaaaattt
     6901 caaatttatt aaaaagatct ggattatttt ctaaaatatt acgcaagatc aaatcttcta
     6961 tcacgctttt agtgcaatct gtttgcttag gccaagctct taaataaccc tcagcttcac
     7021 ctttagcact tgcatctact ccaagtcttt cttctttgat aaaaatatct cttttagcat
     7081 ctatattatt taccacacgc caaacaagca tataagaatt ttcaagctta ttttcagcat
     7141 ctaaaaacac taaaatccta aaatgttttt taaattctaa aagtttgtca aaactttgtt
     7201 cgattttttc ttttttatca agcaaaatac aaactatagg acttttactt tctttataaa
     7261 attgctttaa atttaaaagt tctaccttag ttttaaaaag ttctagtaat ttttcatctt
     7321 ctaaaatttc aagctcttca acttgtattt cttcgcaagc atcaagtcct gctttacccc
     7381 caaaacaaga attaggtgaa gcatgatcta attgatcaca aattccttct gaaattaaaa
     7441 ttttctttgt attaaaacga tctaacatat aaggaattaa agcatcataa tctttcaaag
     7501 aaggtgcatt tttatccaca aaaattgcat gcttaacaaa actcatttgc cctactcccc
     7561 aaaatgcatg cataatttgt tgcgcatgag cgggatattt tgcatcgatt tttgctaaga
     7621 taagattatg aaagacccca ttttcaggca tattataatc aattaaatca ggtactgaag
     7681 tttgaagcaa aggtaaaaaa attctttcag taccaagtcc catgatctta tcttctaaag
     7741 gaggctttcc tacaaccgtt gcttgataga tcgcatcttt tttagcataa attttttcta
     7801 ctttcatcac aggaaaaagt tcagcaggag tgtaaaaacc cgtatgatct ccaaaaggac
     7861 cttcgatttt aaactcttct aaatccacat aaccttcaat aaccacatca ctatcataag
     7921 gtataaaaat accattttca caaggagtaa tttttgcagg agttttttta ataaaaccat
     7981 aaagtaaaag ttcaaaaatt cccttaggta aaggtgcttg agaacaccaa atataaagcg
     8041 gatctccacc tatggctata cttacaggca tttttttaaa accagcattt ttgtattcgt
     8101 gataaaaatt tgccccatct ttatgaattt gccaatgcat taaaagttca tttttatcac
     8161 tcatttgcaa acgatacatt ccaagattat tttgagtttt atctaaattt tgtgtataaa
     8221 cttgccccat ggtaataaat ttacccgcat catcttccca agtttttagt atgggaagtt
     8281 cttcaagtga gtttaaaatt tcataatcat acaaggcttt attttttttc agtcttttag
     8341 gaggaatatt tttaaaactt aacaaattca taaaaaaatc catttttgct ttaaaactcg
     8401 taggaatatg aagcttggtg agttttgaaa tttcttcagc cacctcttca taatcacgtc
     8461 caaaagctaa atttaaagcc ttttcattgc aaaaagtatt catcaaaaca ggaaatttat
     8521 attgtttatt taatttttta tctataggat ttttaaataa taaagccttc cctttttctc
     8581 cttttttagc ttctatatag gctaaatgag cgatttcaag atctacatct acaggttctt
     8641 caattaccct taaaagatca ttttctttta aaatttgaat aaattctttc atatcatact
     8701 ctcagctttt tttaaaagtt ctttagcacc tttagcaata aactccttag ccaaactctc
     8761 tccaaaacct ttaaaatcat tctttttaat cattctctta tcttttaaaa tttcacttcc
     8821 atcgggtagt ccaagtaccg cacgcacgca aatttcatct cccaagagct ctgcgttaat
     8881 acctatagga acttgacaac ctccttctaa agtagcaata aattctcttt caatgcttgt
     8941 ttcaatcaaa gcattttcat catttaaaca ttttaaaagt tctaaaattt tttcatcatt
     9001 tatgctttct atacctaaag ctccttgaga agccgcagga ataagctcat ctttgctaaa
     9061 ttcataaaca aaattcactt gcttatctaa gtttaagcgt ttaattcccg ccattgccaa
     9121 aataatcgca tcaaaatcat tattttttaa tttctctata cgagaattga cattaccacg
     9181 caaagaaata atatctaaat caggtcttaa taataaaagc tgcatcttgc gtctaagact
     9241 agtagtgcct atttttgcac cttttggcaa agaaagaaaa tctttataat tttgacttag
     9301 catagcatca ttgctttgct ctcttttact taccgctgcc aaaactaaac cttgaggaaa
     9361 aaaactaggc acatctttta aactatgcac cgctaagtgt gcttcttttc ttaacatact
     9421 ttcttcaagt tcttttgtaa aaagtccttt accaccaatt tttgccaaag gagaatcaag
     9481 caaaacatcg ccttttgttt taaaaccttc taaaagcact tcaatttgat gtgtattttt
     9541 taaaatttgg gctacatgtt cactttgcca aagagctaat tgactttttc ttgttgcaat
     9601 aataagcttc attttctatc ctctataatt tcaacatcaa taatttcttc attagaattt
     9661 tgatactctt gcttggtgta ttgatatttt gatttagtta ttaatttcaa agcaatacca
     9721 aagaaaaata caaaaattcc aaaaacactt gtaataatcc ctggaaaaac aagtaaaaac
     9781 cctgcgataa caaaagaaaa ttgtgttaac atatccttta agccacccat ttgaaattca
     9841 agcatatttt tccaaaaaat tcccaataaa accgcaccaa aaatcatact caaaagtatg
     9901 aaaaataaaa aattaccaaa accaaaaaac actataaaaa gtatacttgc aataatttca
     9961 agtacaaata aagggcttaa acttaattta taattcataa cactttcttt ttaagaattt
    10021 ccataagttc atcagttttt ataagttctt ttatcaaacc ttctctttgg ataagctcta
    10081 tttcattctt ttctaatcct ttaccaacaa ctaacgcata aggaaagccc ataagttcaa
    10141 aatcattcat tttaacccca aaacgctcat ttctatcatc aagcaatacc tctaatccaa
    10201 gattagttaa atcctcataa agcttattgg caaattctaa agccttttca tctttgagat
    10261 ttgaaacaat aatttcaagc acaaaaggag ctaaagtttt attccaaata catccttttt
    10321 catcatgact tgcttcagta gctacagcca acaagcgtga aacacctatg ccataacatc
    10381 ccatgtaaaa aggctgactt ttgccatttt catctaagaa atttgcattc atcgctttgg
    10441 aatatttttg tcctagctta aaaatatgcc ctacttctat acctttactt tgttttaatt
    10501 ttgctccaca tttaacacag caatcccctt ctttaacttc aatcaaatct ttaaaacgat
    10561 ctttatttaa atttacaaca tcaataccga ttaaatgata atctttttca ttcgcaccca
    10621 taatcatttg cttttcgttt tcaagctcaa aatctatata aaaatctata tcttttaatc
    10681 ccacaaaacc tataaaacca gctactaagc cagctttttc caattcttct tcgctcgcat
    10741 cgactagttc aagggcactg caagcatttt gagccttaac ctcttgcaaa tcatcacttc
    10801 ctcttataaa aaacacaact aatttgcttt cattttcata aatagctttt tttaccactg
    10861 ctttaatcgt ataaaaagca ttgattttaa aaaattgtgc taaagaatct atagttttaa
    10921 tatttggagt gtgaaattta cttgcataat ttgcttcagg acgctcatct tgacaagttt
    10981 ttttagctct ttttgcagct tcaacattag ccgcataatc acaattttca caaattaaaa
    11041 tatcatcttc cccatttttt gctaaaacca taaattcctt agagccactt ccaccaatag
    11101 ccccactatc agcttcaact gctctaaaat caagccccat tctttgtaaa atttgagaat
    11161 aagttttata cataagctca aactcacgcc ctaaatcttc ttcattagca tgaaaactat
    11221 atccatcttt cattagaaat tcacgacatc ttaaaagccc aaatctaggc cttgcttcat
    11281 cacgaaattt aagtccaatt tgatataaat gcaaaggaag ttgtttatag cttgtgattt
    11341 tgttttttac caaagaaagc atagcttctt catgtgttgg acctaaaaca aattcatttt
    11401 cttttctgtc tttaaaacgc aaaagttctt ttccaaaaac attgtaacgc ccactttctt
    11461 gccacaaact tgcaggagtg ataaaactaa gatttacttc ttgtgctcca gccttatcca
    11521 tttcttcttt aactatattt ttaatcttgt ctaaaactct ttttcccaaa ggcaagaaat
    11581 tataaagtcc gctaccaatt tgttctacaa aacccgcacg cgttaaaaaa atatgactag
    11641 gtaaactcgc atcttttggc gcttctttta aacttggtgc ataaaattta gtaaatctca
    11701 tcattattct ccatatcaaa ttcacattta tattgattta aaccttcaag attattttgc
    11761 aaatcaaaaa cataacgcat agcattaatc actgtatcgc tttgcatttt accttgtaaa
    11821 tgtttcaaat ttacagtagg cgtgtgtaaa aaagccttaa aaacttgatg aatcaacttt
    11881 ctagcctctt ctttatcaga ttttttcaaa tatccttttt ttaacgcaat ttcaagttgt
    11941 ttatctgcat attctttagc ttgcaagcgt atagctttga taataggcat caaagccaaa
    12001 tcgtttaaat acctaaaaaa ttcacttgtt ttacgaccta ttatcccata agccatacga
    12061 gcttcttgtt ctcttagtgc taaatttttt tgaaccacaa tttcaagatc atctacagca
    12121 aaaacagata tattttcatt ttcattgata tcaatatccc ttggaactgc aatatcaaaa
    12181 aaataccttt tataagaaag ttcttctatt aaagaatttg taataatagc atttggtgca
    12241 ttggtagctg agaaaaaaaa ctcgtattga tttaaatatt tttttaaatt ttctaaacta
    12301 tcatattcgc ttaaaacacc aagtctctca cacaaatctt tagctttttg taaatcacga
    12361 tttaaaataa tcaccttagc acccgcagca attaaatgtt ttgccgcaag ttctcccatc
    12421 tctccagctc caataacaac agcttttttt tgcgttaaat ctgcaagttc ttttgctttt
    12481 gccacggcaa cgctagctac agaaatagaa tttttagaaa tttgagtttc attgcgtacc
    12541 ttagcagcac atttaaaagc actatgtact gctcttgaaa ggtgtactcc acaaaaatta
    12601 ttttttacag caaaagcaaa ggcatctttt aattgtcctg ctatctgagt ttctccaacc
    12661 accaaactat ccaaagaact tgctacagaa aaaagatggt ggattgctcc actatcttca
    12721 aaaatatcag ctttttcaag taaaatatct ttatcaacat cacaaagtaa agccaaagat
    12781 ttaacaataa actccgcaca ggccattttt acaaaagcaa caatttcaac acgattgcaa
    12841 gtgcttataa ccaaacattc ttcaatattt tcatgagtgc taatgatttt taaaaactca
    12901 ctttttttag cttcattgga aaagcttaac ttttccctta aggcaatatc tgtattttta
    12961 tgagtaaaag atatacaata atacattaaa attccctatc tatcatagct ttaataatat
    13021 cattaagctt gttattatca tatttttcaa ttgcttttct agcctttttt gcataagttt
    13081 tagcttctaa aatagctttt tctaaagctt tttgttcttc aaatttagtt tttagccatt
    13141 ctttttcatt ttcatttaaa tcttttttaa ataaagtctg caaatatatc ctatcttgtt
    13201 cttgtaaatt ttcataaaga taaatataag gcaaggtagt tttaccctct ttaaaatcat
    13261 tcatagcagg ttttccaaga attttttcat cactcttaat atctaaaata tcatcaatca
    13321 tctgaaaagc aagtcctaaa tttttaccat attctgcaaa atctttttca tataatccag
    13381 ccaaaatagc tccgcatcta gcacttgctt caatcaaaac agctgtttta ttatagatca
    13441 ttttcaaata agcttcttta ttgatattaa atttctctcc caaatcaaca tccataagtt
    13501 cgcctatagc aagctttaca acagcatctg aaataatact tgcaaatcta gcatccattt
    13561 tgcttaattc ataaaaggct tttgaataca aaatatcgcc caacataaga gcattttttg
    13621 taccaaattc agcattaaca gatcttgctc cacgtcttaa ttcactctca tcaataatat
    13681 catcatgtaa taaactagca agatgtatca attctatagc tgcacaaatt ttaaaagcaa
    13741 tctcactctc atctgcgata gctaataata atttagaacg taatttcttt cctgatttta
    13801 catttgaaag catatttaaa ataggttcat agccaagttc ttctaaaaac tgttttatta
    13861 attcatctat tttttgcact atcttttcct tgttaattgc tattattatt ttctttactt
    13921 gttaatggtt ttacctgagg ttcgttaaaa ttaatcatag gaacaacctg attattttgc
    13981 ggtggatttt gtaaagcttt ttttctcgga tctaaaaatt ctaccattaa gcgagattcc
    14041 ttatcttcta tataaaccgt aaaagttgcc aaacctttat tataaccact aaattctaaa
    14101 ataagtcttg ctctatcaat atgtggatta gtataatcag gtattaaagt ttgagttacc
    14161 caatctaaat ttcttcttaa actcatcaca aattgacgcg gatatttgcg aaatttcgaa
    14221 tgtacgatga tattagtatt atcaaacaaa gtccaataaa aatcaaaatt ttgcacctta
    14281 tcttcatagc ctatttcttt aatctgcaca ctagctctct catctttttt aagtataaat
    14341 ttataagtat aatcaaaagt tggttcagat gctaaaacat tactaaaaat aaaaaaaata
    14401 caaattaaat aggggcttat tttaaacaat tttagccttc gtgtcctaaa atttttgcgc
    14461 ccaattctat ataaatatca ttttgccttt cttctatgaa atcaccattt tctaatatga
    14521 aattttttac atccatttct gttagacctt gtttttccaa aagttccacc atagcaatat
    14581 gatcagcaaa aaattcctca aaaacttttt ctaaggctcc taaatttcca ttttgtataa
    14641 tttctataaa tttttctttt ggagttttat taaacatttc atcaaaaaaa tccattaatt
    14701 ttccttgaaa atataagttt ttgattataa aattttaatc gttaaaagta gctaaattaa
    14761 aataattaaa atttaaattt tatttgcaat gtgtaaaatt ttagaagtta aattccgcat
    14821 gatgcggaat ttattatgaa tgtggttttg cttgagtggc gtattttaca cccagatcaa
    14881 aagctttagc atttgcatca cgagtttttg caggaaccat atgaagcata gtttctttta
    14941 aaacatctaa atctatacat ttactcatat aagcagcaat tgcaagtgca acaactgatt
    15001 gagtagccac atttcctacc tcatctttag ctatggtaat aatagggatt tcaaaaattt
    15061 gccatttttt ataatcttca ctttcaggat gtactaaatt tggctctaca actataatac
    15121 ctccttcttt tacaccccca cgaaaacctt tataaccctt atctgcagtc gaaagcataa
    15181 aatctacttc cccttctaca gcataaggaa ataaaatttc tttatcatcg atgataatat
    15241 ccaccttagt agggccacca cgcacttgtg aagtgtaagt agaagcctta aaagcttgac
    15301 gaccttcttt aatggctgct tctgctaaaa tttctcctgc ggtgataaca ccttgtccgc
    15361 cttcaccgcc aaatcttaat tgatatttca ttttaaagct cctaaatcca ccattctttt
    15421 ttctttggct gcacgacgta cttcttcata agcgtggcag tattctggct gagaattatc
    15481 ttcatgtaaa attcctgttg gaaatttatc ttttctttct tcaaaatcca tgctttcaaa
    15541 tttagcttta tccacaacgc gatttttaat ccaatcaagc atagctacag cttcgcccat
    15601 tttgtttttt ctgcctagat tgatatgaca atttgaaaaa acatctacaa aactataacc
    15661 cttatgcgct aaagccttat aaattaaatt ttcaagctta ttagcttcga tcacattacc
    15721 ccttgccaca aaagaagctc ctgcagcttt agttaattca cacgcatcaa aattagggtc
    15781 aatatttcca aattgagctg ttactgtata aaaacctttt ggagtagttg gagaagtttg
    15841 agaattagta agcccataaa taaaattgtt gattacaata tgagttaaat caatatttct
    15901 gcgacaacca tgtatagtat gatttccacc aattgccaaa gtatccccat ctccgcttac
    15961 tacaataaca tgtttactag gattggctag tttaatgcct gttgcataag ctattgctct
    16021 accatgagtt gtatgaactg tattacaatt tacataagaa ctcattctgc cactacaacc
    16081 tatacccgaa acaagacaaa catcatccat attccaacca agtttttcta tcgcgcggat
    16141 aatacatttt aaaacaacac catcgccaca tccccaacac cattgagtag gcattttatc
    16201 tactcttaga tattcatcat aattaaaagc catttatata ttctccttta ccttagcaat
    16261 aatttcactt ggagtgatag gacgaccatt tgcacggtgc aaactaataa aatcgcgacg
    16321 cgaagttact ctttcaatct cttcaagata ttgtcccata ttaagctcgc ttaccattac
    16381 ttttttaaat ttgcttacaa cttcagcgat ttttttctca gccactggat aaagagtaat
    16441 cggacggaaa agccccactt taatcccttg ctctcttaat ctttgtatag cttcttttgc
    16501 tgaacgactc acgcttccat aagcaatgat taaaaattca gcatcatcaa gcatatactc
    16561 ttcataagta caaatatctt cttgattgtt ttttatttta cctatgagtc tttccatatt
    16621 ttttttcact ataactccat cttcagttgg aaaacctata tctccatgat gaagtcctgt
    16681 aacatgataa cgataacctg taaagaaagg atttaaagtt gcaggctcat tttctcctgc
    16741 tgcataaggt ttataatcct ttttatcgcc ttcaaatttt ttacggttat atactttaat
    16801 atcttttaaa tcaggtaaaa ccgctttacc attcatgtgc cctacagttt catccataag
    16861 taaaaatact ggagtcatat atttttcagc taaattaaac gctctaatgg tttctgtata
    16921 agcttcttca agacttgcag gagcaatagc aatacttgca aaatccccat gagttggtgc
    16981 tttagcttga aacaaatctc cttgtgctac acgagttgga agacctgttg aaggaccacc
    17041 tctcataaca tttacaatca caagtggaat ttcagcaata aatgcaagtc ctatttgctc
    17101 tgcttttaaa gaaattcctg gaccgctact tgcagtcatg gattttactc cactcattgc
    17161 cgcaccaata gccacgctaa tacctgaaat ttcatcttcc atttgtataa aagttccatc
    17221 atttgcagga agcatatggc ttaattcatg agctatctca ctactaggag taataggata
    17281 acctccaaaa aatttacatc cacaatcaat cgcagctttg gcgattaaaa cattacctgt
    17341 tgctataact tctctcatta tttttcctat gctaattttt tgtatttgtt attttttacg
    17401 gctacagctc tatctttagc ctcagcagta agtttggcaa atttaaattc atctcttttt
    17461 gccaccataa tagcaaaatc agggcaatgt gtctcacact cggtacagcc tatacaggat
    17521 tcagggtgta ccacctctat catttgtcct aaaaccgcat gcacatcatc gcgcatagct
    17581 aaaaccccag cggggcaata gctaacacaa atattgcatg ctttacatct atgctcatct
    17641 acccaaacag gggtatcttt tggagctgtc atactcatgt tttttccttt attaacctaa
    17701 tattttttga atttcttcac caattaaagc cggagaatcc accacatgaa ttccatagct
    17761 ttttaaagct tcttttttag ctgcagcgct ttcatcagca cttcctacta tggcacctgc
    17821 atgccccatt cttttgcctt taggagcagt tgcacctgca atgaatgcta ccacaggttt
    17881 gctaatattt tctttaataa atttagccgc ttccacttcc aaactaccac caatttcacc
    17941 tatcattaca atagctttag tttcatcatc tttttggaat tcacttaaaa gttctttata
    18001 agcaagacct atgataggat caccaccaat tcctactgca gtagaaattc cataaccacc
    18061 ttgaactacc tgattagcag cttcataagt taaagttcca ctttttgaaa taagccccac
    18121 gcaacctttt ttaaaaataa aacctggcat aatacctaat ttgcattctt cagaagtgat
    18181 aatacctgga caatttggtc caatgatttt catacccttt ttattggcat attgcttagc
    18241 aaacatcata tcttttacag gcgtatgttc tgtgattaca actgcaagct taatacccgc
    18301 atcagctgct tcaatcacgc tatcacccac agcaaaagca gggacaaaga tcaagctcac
    18361 atcagccttt gttgctttaa ccgcatctgc aacggtatca aaaactggtt tacctaaatg
    18421 agtttgtcca cctttatgag gggtgacacc tccaactata tttgtaccat aagccatgca
    18481 ttgctcagcg tgaaaagttg cttctttacc cgtaaaacct tgaactatta cttttgtatt
    18541 tttattaacc aatatactca ttttctatcc ttatcctact aaacttttta caagctctgc
    18601 accgttttta agattggttg ctgctttgat atttttaaga tttgaattat ctaaaattgt
    18661 ctttgcttct gctgcgttag tgccatcaag acgcactaca attggaatat ttacctcaac
    18721 attcttagta gcttctaaaa ttccatttgc tatcctatca caacgaacaa taccaccaaa
    18781 gatattgata aatataactt ttacattctt atctcttaaa atgatttcaa aagcctttgc
    18841 aacagtttct ggagaagctc ccccacctac atctaagaaa tttgcaggtt ttgcaccact
    18901 ataattaata atatccatag ttgccattgc tagacccgca ccattcacca tgcaagctac
    18961 atctccatct aatttcacat agcttaagcc aaattcagcc gcttctcttt cagcaggatt
    19021 ttcttcagta atatctctaa gttcagcaat ttcaggatga cgataaagcg cactatcatc
    19081 aaaactgcat tttgcatcaa gggcataaaa atccccttct gtagttttaa ttaaaggatt
    19141 gatttcaagc atattcatat ctttatccat gtaaagctta taaagtttag ctatcataga
    19201 aatgagtttt ttgccttcat ctttatcaag tcctaaaact ctcgctactt caagtccatg
    19261 aaacatttta aaaccaattt gtggatcaat gcctactttt gcaatttttt caggactttc
    19321 tttggctact ttttctatat ccatccctcc ttcacttgaa gcgataatgg taatttgctc
    19381 tgccattcta ttaaacaaaa tagccaaata atactctttt actatattag cgccactttc
    19441 tatataaagt ttttgcacga gcttaccttc aggtcctgtt tgatgagtta ctaaattcat
    19501 tcctaaaatt ttacttgcgt aatcttttac ctcatctaaa ttcttagcga ttttaacacc
    19561 accaccaaga ccacggcctc ctgcgtgaat ttgagcttta actgcccaaa cactaccgcc
    19621 taattcttta gcattagcca cagcttcatc tacgctaaat gcaacttttc cctttaaggt
    19681 agggatacca ttgtctgcaa aaattgcttt tgcttgatac tcatgtatgt tcatttattc
    19741 tcctttatat tgatatttga ttaaagattt ttctaatttg tctttttctt gcaaactaag
    19801 atccattttc atgatttcaa tcacaccttc aagtcctaat cttgccataa ctcccaaggc
    19861 tttgttttgc actccaaatt ctccatgtaa aatcacactc ataggtaaaa actcgccact
    19921 tcttatagac tcaagcattc ttatacaagc actagcaggg gctaaataag ctgaagtttt
    19981 aagatgtttg attactttag ctccacctgt tttaacttca ttttccaaat catcaaattc
    20041 ttcttcattt aaaaattcgc ttatattttt atttttaaca cttgcgtaag attttaccaa
    20101 aaccatatca tcattatgaa aaccaataag tcttgtatcc acgcttgaca ttttgacatt
    20161 aagttttttg gcaagctcat acttaaatct tgcattgtct aaaactcccg ccatggctat
    20221 aattttcttt gatgaaaaaa tcccgctttc ataaagagta ttaagtagaa aatctacagg
    20281 attagttaaa ataataaaaa gcggatcttc tgtaaaatct ttaatttttt tagcacaatc
    20341 aagcataatg cttgtattta actgaagcaa ttcttctcta ctttgcccat cttttctagc
    20401 aaaacctgca ctaaaaagca ctatatctga atttttggta tgagtataat ctttagtgca
    20461 aagtaaatct atatttaaat ttaaagcagc tatactttga gtaagttcta gttcttttgc
    20521 ataaagcaaa tcctcattga tatctactaa aacaatttca tttgctattt ctcttaaaat
    20581 caaagcataa gctacgcttg aacctacatt gccagcccct ataacagtga ttttcatctt
    20641 tgtcctattt tttctaaaat agcgttaaaa gttgcacttg gacgcatgat tttatttgct
    20701 ttttcatcat caaatttata atacccaccc aaatccactt tcacaccttg tgcatcgtta
    20761 aattcggctc tgattttttc ttcattagaa gaaagctcta gggcaatatc tttaaaaaag
    20821 ctttgaagct ccatatcact tgcctgtctt gctaaatgat ttgcaaaata cattgctaaa
    20881 taaaaatgac ttgttctatt atcatcttct ttaacttttc ttgatggagc tttattattt
    20941 tcaagccatt cgcctatagc ctcatcaaga cattctgcta aaaccttagc tttatgattg
    21001 ctacatttat ttgcataaaa ttccaaactt gcttgcaaag ccaaaaattc acccaaacta
    21061 tcccaacgca gatgattttc ttcgactaat tgttctactt gtttaggtgc tgaaccccct
    21121 gctcctgttt caaacatagc tccacccttt aacataggca caacagaaag catttttgca
    21181 cttgttccaa gctctaaaat aggaaaaaga tcggttaaat aatcccttaa aacattaccc
    21241 gtgatagaaa taacatcttt accttctcgg attaactcta aacttcttaa acaagcttct
    21301 tttggagtta aaatggctat atttttaccc ttttctttta aacgattttg taccaaagtt
    21361 atcatgattt tattactagc tcttttgcta tctaaccaaa aaatagcttc ggctccacta
    21421 agttctgatc tttctatacc taaatcaatc caatttaaca ctgcatcaaa tttagcctga
    21481 ttagctctat aaatatcacc ttttctaacc ttatgttcta ataaaacttt accgttagaa
    21541 actattttaa aagttccttc ttctttagcc acaaaggttt tatcgtgcga tccatattct
    21601 tgagcttttt tagccattaa acctacatta gatacactgc caagttttga aggatttaaa
    21661 gtaccatttt tatgcaaatc ttcaataacc gcctcataaa tagttgcgta agtttgatca
    21721 ggaattacgg catttgtgtc cttttcctta ccttccttat cccacaatct tgcgccattt
    21781 ttaagcattg caggcataga agcatcaacg ataacatcgc ttggaacatg aagatttgta
    21841 atgcctttat ctgaatttac catagaaata tctgcagatt tagctaaaat ttcattgtat
    21901 ttttttaaaa tttcatcttt tttgcttgaa ttttcgatct tacttaaaag ctcacttaaa
    21961 ccattatttg gattaatgcc taatttttca aattcatctt gaaattcgat aaataattct
    22021 ttaaaaaata cttttaccgc ataaccaaaa agtataggat cacttacttt catcattgta
    22081 gcttttaaat gcaaagaaaa aagcacatca tcatctttgc ttgctttaat ttcttttgca
    22141 taaaattcct gaagtttttg cacatccata aaagtagcgt ctaaaatttc atttttttca
    22201 agttttaagc cctcttttaa aatttctttt ttaccatcaa cgcttgtaaa ttctatatta
    22261 gccacacaat cttgatcgat taaaaccgct ttttcattag agaaaaaatc cccttctttc
    22321 atgtaagaaa cacgagtttt tgagtttgga ttaaactcaa ccacacgata aggattgttt
    22381 tttgcataat cttttaccgc ttttgttgaa cgacgatctg aatttccttg tcttaataca
    22441 ggattaaccg ctgaacctaa aactttttga tattttgttt taatttgcaa ttcttcatca
    22501 ttttttggct catctgggta atttggtaac atgtaaccct tatcttgcaa ttctttaatc
    22561 gccgccttaa gctgaggaat agaagctgaa atatttgggg ttttaataag atttgcatcc
    22621 gatcttttga caagctcacc taaaagttct aaagcatctt cacatctttg ctcctctttt
    22681 aaatactcac taaaagcagc taaaatcctt ccagataaag aaatatccga ggtttttact
    22741 cctatatgtg ccctacttaa aaaagctttc actataggca aaaacgaata agtcgcaaga
    22801 gctggcgact catctgttaa ggtataagta atttgcattt ttagtccttt aaaatactta
    22861 tttttatttt catttttaag tatattacaa ataaaaaaaa atgcaagagt aagtttaaag
    22921 tttgttttag ttttcaaaca aactttaaat atttttaatt aagtaaatta gcaggaagtt
    22981 gtatgatatt tttaataaga ttaaaagggg tttttagggt atctgttaaa atttcggtat
    23041 gaaatttagg gtcatctata cttccatcta tttttaagtt tgtgctaatt tcttgatttt
    23101 tacctaaaat tacataattt aaaattggaa ccttggatat agcttctgaa gctgatttta
    23161 aagttttaag ctctaagcta aaatccactg tatttaatct taaatttgct gatcctaaac
    23221 catatatatc tacactatcg ccatttaaat taatagccaa aacacttaaa agatcttttt
    23281 ttctattaaa aataatcttt ccatcataca agcttaaacc tttttgatta aaagttggag
    23341 atttaaacat caataaactt ggtacagtat caataaagga aataagctga tttacacctt
    23401 ttaaatcctt cacataagtg tttttaaaat cgatctgtcc atcaaaatac tccaatccac
    23461 ttccttttat acttaagtta aacactccat cttgaacagc ttgtttttgt aaaaactcat
    23521 ttaaataatt atcatcaata ttgctaacgt ttaaatttac atcattagaa gaataataaa
    23581 gttcaaattt tgcatttcct ctagaacctt taagatccaa agcattgcct tttaaatcag
    23641 cctctaccct atcaaaagcc aaagttttat tagaatctgg caaaattaaa gctacatttg
    23701 ctccaccaaa actaatattt tgggtattag tagaaatatc aaatgttgaa tttgaagagt
    23761 tggaaccttt tctataaata taacttaaat tttttaaatg aatttcttta ttattagaac
    23821 ttattttagc acttgctgta tcactttgag tatgaatttc cataatgccc ttatttttta
    23881 caatatcaaa gctatcattt tcataaggag tttgaccgtt aataagtaaa ttatttttaa
    23941 aataagcatc attaacgctt gcattaaaat cttcaaaatt taaagtttta taataaacat
    24001 ttttagcatc gataaaccca aactttttaa gcaatggaga aaatgaaaat aaaatcttag
    24061 gattactaag attagcctca agtccatctt taaaatttaa aatcaaattc cactgaggaa
    24121 tgctaatgtt aacattttgc gaataatcta attttacttc tacattttga ttttttaaat
    24181 ctaaaagctc tccattgtca aaataaagcc ttgaaatctg agtattgaaa tttccttgct
    24241 gtttttgtaa gtcaaattta gcattaaaat cagcttctaa aaagccattt ttaacactgg
    24301 cattttctat atttaaatca ttttgattta attttacaaa tgcttttgta atattaaaat
    24361 cagccaaaga aatactagca ttctctaaag ctaaaatacc actataagaa atttcaccct
    24421 tatcatgaaa atcaatttta agctccaaat cacttttaat ttttccgctt ttttgataaa
    24481 aaggtagtga aaaatgataa tcctctaaag ctttagcaag tttttcgtca aattttagat
    24541 tatcagactt aatgcgcaaa taaatcccaa cttttttttc atcaaacaaa tcatatagat
    24601 aaaccttact agaacttaaa tcagcaccat tatagaaagc tttattaaag acaaaatcga
    24661 gcttttgttt gtttaaattt aaatcgagtt ttggaatttc aatagcattc attttatcat
    24721 ccaagcgaac tttgacatta ttaacataac ctgatgcact aatattgtct aaataataat
    24781 tatctttagt aaaatctata aagccctgca aataatctaa atgataaaat tctcccttag
    24841 ccctatatgc tacccaaaga tttaaactct gcggaagttc tattctttta ttaactcttt
    24901 taaaaatttc cgtaatattt ctaatattta aatcttctat tttataagct aaatttttat
    24961 ttttataaga gatacttgcg ttaaagtcaa gcaattctcc acttgctcta ccttgaaaa
//
LOCUS       DARGEY010000012        21208 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.012, whole genome shotgun sequence.
ACCESSION   DARGEY010000012 DARGEY010000000
VERSION     DARGEY010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21208)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21208)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21208
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.012"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            25..747
                     /gene="blaOXA"
                     /locus_tag="SF008_000454"
     CDS             25..747
                     /gene="blaOXA"
                     /locus_tag="SF008_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase"
                     /protein_id="HEG8232757.1"
                     /translation="MFGQDKILNNWFKEYNTSGTFVFYDGKTWASNDFLRAMETFSPA
                     STFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSSAIKYSNVLAFKEV
                     ARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAILLFRLSQNSLPFSQ
                     EAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDENKYKAFALNLDIDK
                     FEDLYKREKILEKYLDELVKKS"
     gene            complement(845..1729)
                     /locus_tag="SF008_000455"
     CDS             complement(845..1729)
                     /locus_tag="SF008_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HEG8232758.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(1726..2400)
                     /gene="modB"
                     /locus_tag="SF008_000456"
     CDS             complement(1726..2400)
                     /gene="modB"
                     /locus_tag="SF008_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HEG8232759.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKSKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYSLAHQYAFILFIFSFLVLFSLYFIN
                     KKMSFQ"
     gene            complement(2393..2794)
                     /locus_tag="SF008_000457"
     CDS             complement(2393..2794)
                     /locus_tag="SF008_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HEG8232760.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSVLMLELKSLENLKI
                     GVSVELLFKEHELCFSASKTLLSVENSFLAKITKIKKGKLLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(2791..3540)
                     /gene="modA"
                     /locus_tag="SF008_000458"
     CDS             complement(2791..3540)
                     /gene="modA"
                     /locus_tag="SF008_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG8232761.1"
                     /translation="MKKFIVFFGILFFTLHLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGVENLKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKY
                     AKDKKLAFEFNEFIGSSKAKEIFKKYGFSTP"
     gene            complement(3591..4277)
                     /gene="bioC"
                     /locus_tag="SF008_000459"
     CDS             complement(3591..4277)
                     /gene="bioC"
                     /locus_tag="SF008_000459"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HEG8232762.1"
                     /translation="MNFLKAKDYEKHAKVQDFMGLKLCEILKDLKISHFEKVFEFGCG
                     RGEFSKKLQNFITFNKYLKNDILNFKENSNILIFDMNEIAKQDLSKEKFDLIVSNATL
                     QWLDLKRIILSLRDMLNQNGILLLSTFAKQNLKEIKQSTGFGLNYFSLNELEQIFKVY
                     FNEVKITQELVELSFDNALEVFRHLKLSGVNSLGFYPLNKCFLKDFEEKFQNKLTYHP
                     VFILCKNDIK"
     gene            complement(4274..4885)
                     /locus_tag="SF008_000460"
     CDS             complement(4274..4885)
                     /locus_tag="SF008_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HEG8232763.1"
                     /translation="MKYEFLCKNPDSKKLIVVFGGFASYPSHFSHLKSDKNVILFYDY
                     ENFDLNFNFKAFDELFLIAFSIGVCVANRLLKELNFKQKIAINGTNLGIDKSKGIHPT
                     IFKKTLQNFKLEHFKEALFKERKSLAKDFIFKDEKSLKIELEKLFDFALTKQEENLLW
                     DKVYSSKEDEIFPPNALKNSFKNLIFLDEPHFAFFHFKTWDEL"
     gene            complement(4882..6024)
                     /locus_tag="SF008_000461"
     CDS             complement(4882..6024)
                     /locus_tag="SF008_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HEG8232764.1"
                     /translation="MKLEKILQDLEQNHNLRTLTPLKHENKFVYKQDQKLLNLAGNDY
                     LYLASSKELKAEFLNTLKEQDLFFSSSSSRSLSGNFEIYEELESFLKTKFKDKEILHF
                     NSGYHLNISCIAALSSVSKTLFLADKFIHASMIDGLRLGEADFFRFHHKNMNHLESLI
                     QKHYENYENIIVLSEALFSMDGDFSDFKTLCELKRRYDKIKLYIDEAHSVGCFDKEGL
                     GLVKKLALENEVDFLVFTFGKAIASMGACIICDEKYKKFFINKARAFIYSTALPPINV
                     AWTQFIFKKMPYFKKEREKLELLSTFFKSKLQEKNHTVLGDAYIICLLLGENKKALEI
                     SQKLQKAGFFAPAIKEPTVPKNTARIRFSLHTGLNTEELERIIELL"
     gene            6092..7375
                     /locus_tag="SF008_000462"
     CDS             6092..7375
                     /locus_tag="SF008_000462"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HEG8232765.1"
                     /translation="MQNQILKNLDLKHIWHPCTQMKDHETLPLIPIKKAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKITNAIKKQVDKLEHVILAGFTHEPIIKLSARLCEKV
                     GHDFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKALLLECLSTPVPQGKDYTKELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEAGFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVLESLEQIFKEF"
     gene            complement(7362..7967)
                     /locus_tag="SF008_000463"
     CDS             complement(7362..7967)
                     /locus_tag="SF008_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HEG8232766.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(7977..8291)
                     /locus_tag="SF008_000464"
     CDS             complement(7977..8291)
                     /locus_tag="SF008_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8232767.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLIAVIITCTAGLKF
                     LS"
     gene            complement(8294..8632)
                     /locus_tag="SF008_000465"
     CDS             complement(8294..8632)
                     /locus_tag="SF008_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8232768.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWHYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIAILLLSI
                     IALKWVSKEA"
     gene            8764..9300
                     /locus_tag="SF008_000466"
     CDS             8764..9300
                     /locus_tag="SF008_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HEG8232769.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            9297..9842
                     /locus_tag="SF008_000467"
     CDS             9297..9842
                     /locus_tag="SF008_000467"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEG8232770.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHTKKA
                     LLELIENNDLSAISSKYSLKA"
     gene            9844..10902
                     /locus_tag="SF008_000468"
     CDS             9844..10902
                     /locus_tag="SF008_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEG8232771.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WALFFCCIYIGLNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQ
                     NSAQNIKIFNINDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDF
                     SELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFF
                     APFLMLVMYYFFPVIARFFNLAIVTFVAFVVTLMIWGVLFLLTRLSENSVIASEIGIV
                     VPIIILGCLSAYMYYKHR"
     gene            10946..12154
                     /gene="lysA"
                     /locus_tag="SF008_000469"
     CDS             10946..12154
                     /gene="lysA"
                     /locus_tag="SF008_000469"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEG8232772.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYVKNSSFLEPVGVHFHIGSQLLDISPIHEAAGIVAKLVRELKALQIDLKF
                     FDIGGGLGVAYEKDECESDLYDYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYNQAQESLCDVVGGICESGDFFA
                     KARSLPSTQSGDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFEDQ
                     IALEEKFLKA"
     gene            12156..12923
                     /locus_tag="SF008_000470"
     CDS             12156..12923
                     /locus_tag="SF008_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HEG8232773.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYLIITNNTK
                     KLDFLEKLQQKGLAIKENAYIDPFSVLKHLLRPCKVAAFGADEFVKSLENLGFELDFV
                     NPSAVLVASYDDFKFKDFATMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRRQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKDLKCQI"
     gene            12911..13984
                     /gene="pheA"
                     /locus_tag="SF008_000471"
     CDS             12911..13984
                     /gene="pheA"
                     /locus_tag="SF008_000471"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEG8232774.1"
                     /translation="MPNLEEFRNKIDAVDDKILDLLNERMTYVKSIGELKQSSGGSIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSRIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            13974..15068
                     /locus_tag="SF008_000472"
     CDS             13974..15068
                     /locus_tag="SF008_000472"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEG8232775.1"
                     /translation="MKFNEFLNHLSNYEPGKDIEVIAKEYGVKKVIKLASNENPFGTP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHAKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCL
                     PNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLKPCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNLALKAAVAAINDDEFAK
                     KTLENNFSQMELYKEFAKKHNIKIIDSYTNFITYFFDKKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            15120..16802
                     /gene="fliF"
                     /locus_tag="SF008_000473"
     CDS             15120..16802
                     /gene="fliF"
                     /locus_tag="SF008_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HEG8232776.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            16802..17830
                     /gene="fliG"
                     /locus_tag="SF008_000474"
     CDS             16802..17830
                     /gene="fliG"
                     /locus_tag="SF008_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HEG8232777.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            17838..18668
                     /gene="fliH"
                     /locus_tag="SF008_000475"
     CDS             17838..18668
                     /gene="fliH"
                     /locus_tag="SF008_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HEG8232778.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENANISLNDEKPVEENQVIASTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFAKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            18661..20508
                     /locus_tag="SF008_000476"
     CDS             18661..20508
                     /locus_tag="SF008_000476"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HEG8232779.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFPCVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHAQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDTKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIAFRYPRGSFILDKEFNSCEIKLGKAQWLVKNSSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEKNLEKDVNSLLTKVLKFYH"
     gene            20594..21004
                     /gene="perR"
                     /locus_tag="SF008_000477"
     CDS             20594..21004
                     /gene="perR"
                     /locus_tag="SF008_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HEG8232780.1"
                     /translation="MELLQMLKKHELKATPQRLCVLKILKRHEHPNIDELYTEIKKEY
                     PSISLATVYKNLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCAKCGGIEDLSFKD
                     AKLYEYQEHLEKKIGNLVNHLSVCAYVDSCKKCH"
BASE COUNT         7633 a         2877 c         3564 g         7134 t
ORIGIN      
        1 ttatttttac ttttcttaaa tttagtgttt gggcaagata agatattaaa taattggttt
       61 aaagagtata atacaagcgg cacttttgtt ttttatgatg gaaaaacttg ggcgagtaac
      121 gactttttaa gggctatgga gactttctct cccgcttcca cttttaaaat ttttaatgct
      181 ctaattgcac ttgatagtgg tgtgataaaa actaaaaaag aaatttttta tcactataga
      241 ggtgaaaaag tatttttatc ttcttgggcg caagatatga atttaagttc agctataaaa
      301 tattctaatg ttcttgcttt taaagaagtg gcaagaagaa ttggtatcaa aactatgcaa
      361 gaatatttaa acaagcttca ttatggtaat gctaaaattt ccaagatcga tactttttgg
      421 cttgacaact cactaaaaat aagcgctaaa gaacaagcaa ttttgctttt tagactttca
      481 caaaatagct tacctttttc tcaagaagca atgaatagtg ttaaggaaat gatttattta
      541 aaaaatatgg aaaatttaga gctttttgga aaaacaggtt ttaatgatga gcaaaaaatt
      601 gcttggattg taggttttgt gtatttaaaa gatgaaaata aatataaggc tttcgcgcta
      661 aatttagata ttgataaatt tgaagattta tataaaagag aaaaaatttt agaaaaatat
      721 ttagatgaac ttgtaaaaaa aagttaaaaa tgatggctag tgagtatttc gtaaaatgca
      781 aaaatactta attgtatgat ttgcgtacac ttaaagtact cattaaaaaa ttaaattttt
      841 gctcttattt atcaagtttt cctacgatga tagggttaaa ggcttttatg gatagcaaaa
      901 gcgtatcgcc gatttttaca tcttgataag cttttagaaa ttcctcttca ctaagagtga
      961 ttttaataat atcttgattt aaaagcaagg ttaaaaccac taaaatatca ctttttttaa
     1021 tttctagcaa agttgcactt aagcgtaatt ttgcgctgat atttgaatga gtaaaaaatt
     1081 catttttagg aaaatcttta ataatttttc cgtttttaag ctctaaaatt ctatgactta
     1141 acttataaat ttcagctaga tcatgactta ccaataaagt acttatttta aaatactcta
     1201 aaatcttggt taattcatct tgtaaattgg cacgcatttt aaaatccaaa gcactcaaag
     1261 gttcatctaa aagcaagatt tttggttctc ttgctaaagc tcttgctaaa gctactcttt
     1321 gtgcctgccc cccacttaaa tgtttaggat aaattttagc taaattttca agcttcatta
     1381 aggctaaaag ctcgctaacc tttgctttag aactagcggc ataggcgatg ttttctttta
     1441 tattcatatt tggaaaaagc gcataatctt gaaaaacaaa accaattttt cttttttgta
     1501 aagctaaact aaaatttttt gaagaatcaa accaaagttc attatctact tctatacgcc
     1561 ccaatttagg ctttataagt cccgctatga tttttaaaag agtggttttt cctgctccac
     1621 tttcgccaaa aagtgcagta atttttcctg attctatatc ttttttaaaa tttaaatcca
     1681 gtcttccttt agcggtattc ataggatgat tgatatcaat tcttatcatt gaaaactcat
     1741 ttttttattg ataaaataaa gactaaaaag tactaaaaaa gaaaaaataa acaatataaa
     1801 agcatattga tgggctaagc tatagtttaa gatttcaagt tcatcataaa tagctatact
     1861 agccactaaa gtttcacctt gtttatgtcc tcctatcatc atcacgactc caaattcacc
     1921 cacagtatgg gcaaaactca tcgcacaagc actaaaaatt cctgctttag aattaggtaa
     1981 aatcactcta aaaagagtat aaattttact tttacctaaa ctataagaag catcgagcaa
     2041 atttggattg atcgatgaaa aggcactttg caaaggattt accataaaag gcaaagaaaa
     2101 aatcaaagaa gcaaaaacaa gaccttcaaa actaaaaacc aaagaaagat taaaatattc
     2161 ttttaaaact tgccctaaaa aactattagc cgaaaaagtt acaagcaaat aaaatcccaa
     2221 aacactagga ggtaaaatca aaggcaagga aataaagctt tgaaggattg ttttaaaagg
     2281 aaaacgcaca aaacttaaca aataagctaa aaaaacaccg ataaaaaaaa ggataaaagt
     2341 cgtgataaaa gcaagtttaa aagtaagata aagggtttgt aaaaaagctg gatcaagcac
     2401 tatgactcct taatacaata tcatttgctt ttacaaaaca aagccattct tgattttcac
     2461 aaatttcaag ttctaaagct ttttctttgg tgataatact agaaagttca ttacctttaa
     2521 aatcaaaaaa tacctgatat aaaagtttgc cttttttaat ttttgtaatt ttagctaaaa
     2581 aagaattttc aacacttaaa agagttttgc ttgcgctaaa acaaagctca tgctctttaa
     2641 aaagaagttc tacactcaca ccaattttta aattttctaa agattttaat tcaagcatta
     2701 aaacactaaa aatcacttct ttagaaagta ttttaacaat aactatatcc tcttgattta
     2761 aaagctcaca aatttgtcct tttataaggt tcatggtgtg ctaaatccgt attttttaaa
     2821 aatttctttt gcttttgaag agccaataaa ttcgttaaat tcaaaggcta attttttatc
     2881 cttagcgtat tttgtgatga cataactttg ctctaaaggg ctaaaatact ttgcatcaat
     2941 tataacagcc ttacccttag gatgattgat agaagaaact aaagaataag ccactatagc
     3001 tatatctgaa tttttgctat ctacatgtaa aacaggcact gagatatttt cgcctaaaac
     3061 gattttatcc ttaagaagct catttaaacc caaattttca agcacttctt tagctgctac
     3121 tccataagga gctactttag gattggctat gcttagatgc gtgattttgt ttgccttttc
     3181 ttttaaattt tcaacgcctc cttggagtaa attttcatcc aagctataca aagccaaaac
     3241 tcccaaaaca taaacttttg gttttattaa agcattttta tcatcataaa tagccttagc
     3301 atatttagta tccgctgaaa aaaagagatc aaattctctt ccttgtttta aaagctcata
     3361 atattttcca gaagcaccaa aaaccaattc tattttatct tctggatgtg ttttcaaaaa
     3421 ctcatcttta acttcactca tcgcctttga agctgaagaa gctacaaaaa tacttaaatt
     3481 ttgcgcattt agatgtaagg taaaaaacaa aatcccaaaa aatactataa actttttcat
     3541 ttagctttcc ttgtgtaaaa atttaatttt tggattataa cacaaaaaaa tcattttata
     3601 tcatttttgc ataaaataaa tacaggatga taagtgagtt tgttttgaaa tttttcttca
     3661 aaatctttta aaaaacattt atttaaagga taaaaaccta aagaatttac cccgcttaat
     3721 tttaaatgtc taaaaacttc taaagcatta tcaaagctta attctacgag ttcttgagtg
     3781 atttttacct cattaaaata gactttaaaa atttgttcta attcatttaa gctaaaataa
     3841 tttaaaccaa accccgtact ttgtttgatt tcttttaaat tttgttttgc aaaagtagaa
     3901 agaagtaaaa ttccattttg atttagcata tctctaagac ttagtataat gcgttttaaa
     3961 tcaagccatt gcaaagttgc atttgaaaca ataagatcaa atttctcttt acttaaatct
     4021 tgttttgcaa tttcattcat atcaaaaatt aaaatattag aattttcttt aaagtttaaa
     4081 atatcgtttt ttaaatactt attaaaagta atgaaatttt gaagtttttt gctaaattca
     4141 cccctaccac aaccaaattc aaacactttt tcaaaatgtg aaatttttaa atcttttaaa
     4201 atttcacaaa gttttaaacc catgaaatct tgcacttttg catgtttttc ataatctttt
     4261 gcttttaaaa aattcaaagc tcatcccaag ttttaaaatg aaaaaaagca aaatgcggtt
     4321 catctaaaaa aatcaaattt ttaaaactat ttttcaaggc atttggtgga aaaatttcat
     4381 cttctttact tgaataaacc ttatcccaaa gcaaattttc ttcttgtttt gttaaagcaa
     4441 agtcaaaaag tttttcaagc tctattttca aagatttttc atctttaaaa ataaaatctt
     4501 tggctaagct tttgcgttct ttaaataaag cctctttaaa atgttctaat ttaaaatttt
     4561 gcagggtttt tttaaaaatt gtaggatgaa ttccttttga tttatctatg cctaaatttg
     4621 taccatttat ggctattttt tgcttaaaat taagctcttt taaaagtcta tttgccacac
     4681 aaacccctat agaaaaagcg attaaaaaaa gctcatcaaa agctttgaaa ttaaaattta
     4741 aatcaaaatt ttcataatca taaaataaaa tcacattttt atcgcttttt aaatgcgaaa
     4801 aatgactagg atatgaagca aaccctccaa ataccactat aagttttttt gaatcaggat
     4861 ttttgcataa aaattcatat ttcataaaag ctctattatc ctttcaagtt cttctgtgtt
     4921 aagtcctgtg tgtaaagaaa aacgaattct agctgtattt tttggcacag taggttcttt
     4981 aatcgcagga gcaaaaaaac cagctttttg aagtttttgt gaaatttcta aggctttttt
     5041 attttcacct aaaagcaagc aaataatata agcatcacct aaaacagtgt gatttttttc
     5101 ttgcaattta cttttaaaaa aagtacttaa aagttctaat ttttctcttt ctttcttaaa
     5161 ataaggcatt tttttaaaaa taaattgtgt ccaagctaca ttaataggtg gcaaagctgt
     5221 agaataaata aaagctctag ctttgttgat gaaaaatttt ttatattttt catcacatat
     5281 tatacaagca cccatggaag caatggcttt tccaaaggta aaaaccaaaa aatccacttc
     5341 attttctaag gctagttttt taacaagccc caaaccctct ttatcaaaac aacccacgct
     5401 gtgtgcttcg tctatataaa gcttgatttt atcataacgt cttttaagct cacacaaagt
     5461 tttaaaatcg ctaaaatctc catccatact aaacaaagct tcgcttaaaa cgatgatatt
     5521 ttcataattt tcataatgtt tttggattaa actctctaaa tgattcatat ttttgtgatg
     5581 aaaacgaaaa aaatcagcct cgccaagtct taagccatca atcatacttg catgaataaa
     5641 tttatcggct aaaaaaagcg tcttagaaac gctagaaagt gctgctatac aagagatatt
     5701 tagatgataa ccactattaa aatgtaaaat ttccttatct ttaaatttag tctttaaaaa
     5761 actttctaat tcttcataaa tttcaaaatt tccactcaaa cttcttgaac tcgaacttga
     5821 aaaaaacaaa tcttgctctt ttagggtgtt taaaaactca gcttttaact ctttagaaga
     5881 cgccaaataa agataatcat ttcctgctaa atttaaaagt ttttgatctt gtttataaac
     5941 aaatttattt tcatgtttta aaggcgttag agttcttaga ttgtgatttt gctctagatc
     6001 ttgcaaaatt ttttcaagct tcattttttt cctgtaaatt taaaaattta aagtattatt
     6061 ttgccaaaat atttttaaaa aagaagttat aatgcaaaat caaatcttaa aaaatctcga
     6121 tttaaaacac atttggcacc cttgcacaca aatgaaagat cacgaaactc tacctttaat
     6181 tcctataaaa aaagcaaaag gtgtatggct ttatgatttt gatgataaag cttatatgga
     6241 ttgtgtgagt tcttggtggg tcaatctttt tggtcattgt aatgaaaaaa tcacaaatgc
     6301 cattaaaaaa caagttgata agctagagca tgtgatctta gcaggcttta cacatgagcc
     6361 catcatcaag ctttctgcga gactttgtga aaaagtgggg catgatttta ataaatgttt
     6421 ttatgcggat aatggctcaa gtgccattga agtagcactt aagatgagtt ttcattatca
     6481 tttaaataag ggagtgaaaa aaagtaaatt tttatcttta agcaattctt atcatggtga
     6541 aaccttagga gccttaagtg tgggcgatgt tgcactttat aaagatactt acaaagcctt
     6601 gcttttagag tgtttaagca cgcctgtgcc acaaggcaaa gactacacta aagagcttga
     6661 aattttaaaa gatattttag aaaaaaatgc aagtgaaatt tgtgctttta tacttgaacc
     6721 cttggtgcaa tgtgcaggaa atatgcatat gtatgaagca gggtttattg atgaggccat
     6781 aaagctttgc cataaatttg gagtgcaagt gatttttgat gaaattgcag tgggctttgg
     6841 acgcacagga actttgtttg ccttacatca atgcaaacaa agccccgatt ttatctgcct
     6901 ttcaaaaggg ataacgggtg gatttatgcc actttctgta gtgcttacaa gagatgaaat
     6961 ttataatgct ttttatgata cttatgaaag ccaaaaggct tttttacatt ctcatagcta
     7021 tacgggaaat accttagctt gcgcggcagc aaatgcggtt ttagatatct ttgaggatga
     7081 aaatatttta gtaaaaaatc aaattttaag cgagtttatc aaaaaagaat tttcaagact
     7141 tgaaaaattt gactttttgg gtaattttag aacttgcggg atgatcagtg cttttgatat
     7201 tttaagcacc aagtataaac gcgtaggact ttttgtattt caaaaagcct tagaaaaagg
     7261 tttgctttta agacctttag caaatacgat ttattttatg cctccttaca tcatcacaaa
     7321 agaacaaatc gtttatgtac tagagagttt agagcagatt tttaaggaat tttaagttgt
     7381 aaaatttctt gcatttgctc tttaaaatct ttatttaaaa tgctattttc atcaaaaaaa
     7441 tcaagattga ttataggaat ttttgcataa ttttttataa aatcatcttg taagatatct
     7501 tttttaccca tcattacaag ggctaaaaga ttgatatttc tttgctttaa agcttcaatg
     7561 ctaagcaaga tatgattaat gcttccaaga tagtattttg ctaccaaaat cgtagggtgt
     7621 ttgaaaatat tcacaaaatc aatcatagtg taattttcat ccataggaga aaaaagccca
     7681 cccgcaagct caataagtag gtttttgctt tttggtaaaa tgatatctaa ggctttataa
     7741 tcaagctttt ctttgatttt tccaagatga ggagaagctg gagtttgcaa aaaaatacct
     7801 tctttaaaaa tctttgtttt tgggctaaat tttgcaataa actcgctatc tgttggagtt
     7861 cctgcttgaa tgagtttaaa ataatcatag ttaaaattcg cacaaaaagc tgcgctaaaa
     7921 tgtgtttttc ctacatcagt atgtattcca cttacataaa tttgcacaaa aaatcctcaa
     7981 gaaagaaatt ttaaacccgc tgtacaagta ataatcacag cgattaaaaa aagtttcaaa
     8041 aaacttttac tttctttata aaaaagcact cctatcatta ccccaccagc ggttccagct
     8101 cctgtccata tagcataagc aacgctcata gcgatatttt gcatacttaa gcttaaaaaa
     8161 gtaaaagaaa atccaaaaca cactatcaaa gctaaaaggt aaagcttgtt tttagtgctt
     8221 acaagttctt tcatgatcac cacgccaaaa atttcacagg cagtagctaa aaacaaataa
     8281 aaccattcca taactaagct tccttgctta cccatttaag ggctataatg cttaaaagta
     8341 aaatcgctat aagcacaagt ttaattatag aaacagcctc attaaaaata aacatttcat
     8401 ttaaaaccac tcctatagtg ccaatgccta caaaaacact ataagtaatg cttacttcaa
     8461 gtctttcaca agcttttaaa aaacaagtaa aagaaataca aaccccaatg gctgttaaaa
     8521 tatagtgcca aatttctgta gaatacttaa gtccacttac ccaaaaacat tctataatcc
     8581 cgcctaagat tattaaaaac caagctatat tgatattgaa tttttcattc acatgaagcc
     8641 ttaaattaac ataatttata aaacaaatta tatcttaaag aaattaaaag aagctataaa
     8701 tttacttttc cataagccaa aattagatat aatcaaagct cattttttaa gaaaggacaa
     8761 aagatgttag aaggcatcgt tagagagagt atcggtagaa aagctgctaa agctttaaaa
     8821 agagatggtt atctaatcgc aaacatctat ggaaaaggat tagaaaacat caatgccgct
     8881 tttaaagtaa atgagtttat taaggaagtt cgtaaaaaaa ctactttaat ttttgatgta
     8941 aaagtaggtt ctcaaacttt aagcgttgta gttgtagatt atcaaaaaga tcctgtaact
     9001 gcagaactta aacatgtgga tttaaaagtt gcacaaaaag gtgtgatttc taaatacatg
     9061 gttccagtta aaatcacagg aacagctata ggtcttaaaa ataaaggtgt tttaatccaa
     9121 tcaaaaagaa gattaaaagt aaaatgtgca gctgaaaatt taccaaattt cttcgaactt
     9181 gatgtaagta aacttgatgt gggtgatgct ttacttgttc gtgatattgt agttcctgcg
     9241 ggagtaacta tgattgatgc tgatagagta gcggttgtag gtgtagaaaa agctagatga
     9301 ttttagtcgt agggcttggc aatataggcg tagagtatga aaatacccgt cataatgtcg
     9361 gttttatgct aattgactta cttttaaaag aaagcaattt tacaaatctt acaaactcta
     9421 aatttaaagg agagcttttt aaaataggtt cttctttact tcttcttaaa cctagtactt
     9481 atatgaataa ttcaggactt agcgtaaaag cagtgaatga tttttataaa tgcgaaagaa
     9541 tgatagttat ccatgatgat atagatataa atttaggagc cttgcgcttt aaaaaaggcg
     9601 gttcaagtgg tggacataat gggcttaaaa gcatagatac tttatgtgga aatgactatg
     9661 aaagagtgcg tataggagtg ggaaagggtg aaaatgtgat ttcccatgtt ttaggtaaat
     9721 ttaaatccga agaagaaata actttaagca aagttttaga gcatacaaaa aaagctttgc
     9781 ttgagcttat tgaaaataat gatttgtctg ctatatcatc caaatacagc ctaaaggctt
     9841 aagatgtgga tattttttcg ttttatttca gggatttatt taaaaaattt ttttattata
     9901 tttttttctt tacttggttt ttattgcggt attgatttac tcttaaattt taaagatcta
     9961 ccaaaagccg caaatcttga tttgctttat gttatgtttt tatctttttc ggcagtgcct
    10021 tatgtattac ccatttcttt gatttttgct ttggtagttt ctttgatttc tatgatcaga
    10081 gcaaatgaat ttgtaagtct ttatgcgtta ggactgagta gaaattatgt tattttattt
    10141 ccttttttat gggctttatt tttttgttgt atttatatag gattgaattt tacttctttt
    10201 gcttatgcaa atgattataa gagaaatatt ttaaaaaatg gcactattat gaatcaaagt
    10261 ggagaagtgt ttttgaaatt taacaataat tttgtttata tttcaaagat aaacaatgga
    10321 caaaatagtg ctcaaaatat aaaaattttt aatattaatg atttaaattt aagctctttt
    10381 gtaagtgcta aaaatgccca ttttgaaggt gaaagctgga ttttgcgaga tggtaatatt
    10441 acattattac ctaaaaatta tgaacttgct aatgatggtt taaagataca agatttctcc
    10501 gagcttaaat cacttgaggg ttttaaacca aagattatag aaggggttgc tagtaatagt
    10561 gattattcaa tatctgatgc acttgaaagt tttgagcttt ttaaggcaca aaatgtcaat
    10621 acagatactc ttaaaatcaa tctttataaa tttgttttta ctcctttttt tgcaccattt
    10681 ttaatgcttg ttatgtatta tttttttcct gtaatagcaa gattttttaa tcttgctatt
    10741 gtaacttttg tagcttttgt agtgactttg atgatttggg gagtcttgtt tttgcttact
    10801 agattaagcg aaaatagtgt gattgcaagt gaaattggca ttgtagtgcc tattataatt
    10861 ttgggttgtt taagtgctta tatgtattat aagcatcgat aaattaagct ttgtgtagta
    10921 aaattataaa aattaaaggt taaatatgga ttataaacaa ttaaaacaag aatttaatac
    10981 ccctttttat atttacaatt ttgatttcat aaaagagcgt tttttaaatc tcaaagaggc
    11041 ttttaaggct agaaaatctc aaatttttta cgctgtaaaa gccaattcaa atttaagttt
    11101 gttgcaaatg cttgcaaatt tagatagtgg atttgattgt gtgagtatag gcgaggtaaa
    11161 gcgtgcctta aaagcaggag caaaagctta taagattatt tttagtggag taggaaaaac
    11221 caaagaagag ttaagacaag ctttagaata tgatatttta tatattaacc ttgaaagcga
    11281 agctgaaatg atgcttttag aaagtgtggc taaagaactt aatctaaagg caagaatcag
    11341 cattcgtgtt aatccaaatg ttgatgcaaa aactcatcct tatatttcta caggattaaa
    11401 tgaaaataaa tttggtgtcg aaattgatat agcaagaaaa atgtatcttt atgtaaaaaa
    11461 ttcatctttt ttagagcccg ttggagtgca ttttcatata ggttcgcaac ttttagatat
    11521 ttctcccatt catgaagcag caggcatcgt tgcaaaactt gtaagagagt taaaagcctt
    11581 gcaaatcgat cttaaatttt ttgatatagg cggtggtttg ggtgtggctt atgaaaaaga
    11641 tgagtgtgaa tctgatcttt atgattatgc acaaggtata ttagcacaac ttcatgggct
    11701 tgatttaact ataggaatgg agcctggaag gtatttagtt gctaaaagtg gagaatttgt
    11761 ttgttcagta ctttatgaaa aacaaaataa aaccaagcgt tttgttgtag tagatggagc
    11821 gatgaatgat cttatacgcc caagtttata cgaggcttat catgaaataa tcttacctta
    11881 taatcaagcc caagagagtt tatgtgatgt tgtaggtgga atttgtgaga gtggagactt
    11941 ttttgctaaa gcaaggtctt tgcctagcac tcaaagtggt gatataatgg ttattaaaaa
    12001 tactggagct tatggtttta gcatgagcag taattacaat actcgtaata aagtttgcga
    12061 attagccctt gaagaaggac aggtaagatt gatccgtcaa agagaaaatt ttgaagatca
    12121 aatcgcttta gaagagaaat ttttaaaggc ttaaaatgtt ttttttagat gttcaaggga
    12181 ctttaatttc tgatcatgat aaatctttaa tccatggtgc taaagaactg atcgattttt
    12241 taaatgcaaa aaatcttcct tatcttatca tcactaacaa tacaaaaaaa cttgattttt
    12301 tagaaaaatt acagcaaaaa ggattggcta taaaagaaaa tgcttatatt gatcctttca
    12361 gcgttttaaa acacctttta agaccttgta aagttgcggc ttttggtgca gatgagtttg
    12421 taaaaagtct tgaaaatctt ggttttgagc tcgattttgt aaatcctagt gctgtgcttg
    12481 tggctagtta tgatgatttt aaatttaaag attttgccac tatgatagaa ttggctagaa
    12541 gagaagttag atttatagct atgcacgaaa ctagtattta taaaaaagat ggtaggcctt
    12601 atcctggtgt aggtagcatt atggctatgc ttaaaaatgc tattgatttt gaatacgagg
    12661 ttgtgggtaa gcctagcatt gctttttata aagaagcttt aaatttaata agaagacaaa
    12721 attcaaaaat cgattttgaa gatattaaaa tcattagtga tgattttagg ggtgacttgc
    12781 ttaaggcaaa agaacttggc atgaaaacct tgctagtttt aagcggcaag ataagcgaca
    12841 caaaagggct tgatacggat ttgcttgatg gagtttatcc tagtgttttt gagtttttaa
    12901 aggatctaaa atgccaaatt tagaagaatt tagaaataaa atcgatgcgg ttgatgataa
    12961 aattttagat cttttaaatg aaagaatgac ttatgttaaa agtataggtg agcttaagca
    13021 aagtagtggg ggaagtattt atcgtcctga gcgtgaaaga gccattatca atcgtttaaa
    13081 aaatgcaaat ttaggacttt tagatcaaaa tgccatagag gcaatttatc aagaaatttt
    13141 tgcagtttca agaaatttag aaatgcctca aactatagct tatttagggc ctgaaggaac
    13201 ttatacacat caagcagcaa gaagtcgttt tggtgcgatg agtcgttata tagccttggc
    13261 caatatcgaa gatgttttta aagagttaag caacaaagaa gcaaaatacg gtgttgtacc
    13321 tatagaaaat aataccgaag gtgcagtggg cattacttta gattgtctag gtaagtataa
    13381 tgagcttaaa atttttggcg aaatttatat ggatattcat cattcttttg taggaattaa
    13441 tgaaaattta aaagaaatca aacgcattta ttcgcatccg caaggttata atcaatgtcg
    13501 taaattttta gaaagtcatg aacttagtgc tatagaattt gttccttcaa aatctacagc
    13561 taatgcagct tacctagctt cgcaagataa atatgcggca gcaatttgtt ctagaatagc
    13621 ggctaagctt tataatgtgc ctgtactttt tgataaaata gaagataatg cagccaataa
    13681 aacaagattt ttaattttaa gcgatattaa aaatcctaaa atgccaaatt gtaaaacttc
    13741 tattttagca cacacagcac ataaacctgg ggggcttagc tttttattag agcagtttaa
    13801 aaaagaaaat atcaatctta ctaagcttga atctcgccct gtaaaatcaa aagaattttt
    13861 acacagtttt tatatagatt ttgaagggca tattgatgat gaaaatgtaa aaaaagcctt
    13921 aaaagatata caagagattg tttggcttgg atcttattta tcaggagaaa aagatgaaat
    13981 ttaatgaatt tttaaatcat ttaagcaatt atgaacctgg aaaagatata gaagttattg
    14041 ctaaagaata tggcgttaaa aaagtgataa aattagcaag caatgaaaat ccttttggca
    14101 cgccaccaaa agctatagaa tgtttaagac aaaatgcaaa taaagcccat ctttaccctg
    14161 atgatagtat gatagaactt aaaagcacat tggctcaaaa atacaaagtt caaaatgaaa
    14221 atatcattat cggtgcaggt agtgatcaag tgattgaatt tgctatacat gctaagttaa
    14281 attctaaaaa tgcttttttg caagctggag ttacctttgc tatgtatgaa atttatgcca
    14341 aacaatgtgg tgcaaagtgt tataaaactc aaagtattac tcataattta gatgagttta
    14401 aaaaacttta tgaaacgcac aaagatgaaa ttaaacttat ttttttatgc ttaccaaaca
    14461 atcctttagg cgagtgtttg gatgcaagtg aggcgaccga gtttattaaa ggtgtaaatg
    14521 aggattgttt agttgtgatt gatgcagctt ataatgaatt tgcaagtttt aaagatagca
    14581 aaaaacattt aaaaccttgc gaattgatta aagaatttga caatgtactt tatttaggga
    14641 ctttttctaa gctttatgga ttaggaggtt tacgcattgg ttatggtata gctaatgcta
    14701 atattattag tgcattttac aagcttcgtg cgccttttaa tgtgagtaat cttgctttaa
    14761 aagcagcagt tgcagcaata aatgatgatg aatttgctaa aaaaacttta gagaataatt
    14821 tttctcaaat ggaactttat aaagaatttg ctaaaaaaca taatatcaaa atcattgata
    14881 gttatacaaa tttcatcact tatttttttg ataaaaaaaa tagtacagat ttgtctgaaa
    14941 aattgcttaa aaagggtata ataataagaa atttaaaaag ctatggttta aatgctatac
    15001 gcattactat aggaacatct tatgaaaatg aaaaattttt tacagaattt gataagattt
    15061 taagatagat aaatcaaata aagatatgta aaattcgcta aactaaggga tgagaattaa
    15121 tggattttaa aaatatgctt catcaaattg ggcaacttta tcaaaattta actcgcaagc
    15181 agcgtatagt gattgctgca tctattgtag tagtggttgg gtttttggtt tttttagctt
    15241 tatttcgtgg aagtggtagt aatgcaaata atggatatgc agttttagtt gaaaatgtaa
    15301 gcccaagttc ttctgctgca attgtagcta aacttgaaca aaataatatt ccctataaat
    15361 tagaaagtga aaataaaatt ttagttccac aagatcaggt ttatcgtcaa agaatgttta
    15421 ttgcaagcga aggtcttata aaagatagtc gcgtgggttt tgaagctttt gatactcaag
    15481 cttttggagc tacaaatgaa gagcaaaagg taaaatacca aagagccata gaaggcgaac
    15541 ttgcaagaac tattgagact ttagaaccta ttcgtagcgc tgttgtacac atagcatttc
    15601 ctaaagatag tgtttttacc gaaaggcaaa ttccgcctac agcttcagtt gttgttaatg
    15661 ttcgcgaagg cttaaagctt actagaaaac aaattgatgg tataaaaaat attgtttcag
    15721 cggcagttcc aaaacttact aaagaaaatg ttaagattag tgatcaaagt ggtgtgcctt
    15781 tagatgagca agaagcatat gaagatgact tggttcgtgc gcaaattaaa tttaaaagtg
    15841 atcaagaaaa agctttagaa gataagatta tagaaaattt agctcctttt gcaggtggca
    15901 tggataaagt aaaagtgagt gtaaatatag attttgattt ttccaagcaa gaatctcaaa
    15961 gtgaaattta tgatccaaat cctatagtgc gtagtgagca aactttaaac gaggaaagaa
    16021 caggtagaaa agatccagaa attcagggtg ttccaggtgc tgtttctaat ataggtcctg
    16081 ttgaaggact tgacaataag ggtcaaattg acacttataa aaaaaatcaa gttactacaa
    16141 ataatgaact ttctaaaact atcacaaata ccaaaaaaca atttgcaaca gttttacgca
    16201 cttcagcagc tgttactata gatggaaaat atcaagatgt ggttgatgaa aatggggatg
    16261 tgaaaagcga atatgtccca ttgactaaag aagagcttgc aagtgttgag agtatagtta
    16321 aaaatactat taattttagc gctactagag gtgatagtgt tgtggtgcaa aatttaccat
    16381 ttcatcgtga gtcgattaga gttgagagta aagttaaaac tttttacaat cgttttgttg
    16441 agccatttat tccgccggtt aaatacttta ttgcagcgat tttacttttt attttttaca
    16501 aaaaagttat tgctccattt actcaaaaaa tgcttgaaga tgtcgcagca caagaggaaa
    16561 tgcagcaagg tccaaatgct gttttagatg atgctgaaga tgctttagag aaatttaatg
    16621 cagcaaggaa aaaagttgaa gaacaacttg gttttgggga taacttcaat gaagattcta
    16681 tccagtatga ggttttgctt gaaaaattgc gtggtttggt aagtgataaa ggtgaggaaa
    16741 ttgcagcact tttgcaaaac ttaattcaaa atgatagcga atttggcgaa aaggatatgt
    16801 gatgataaag ctaagtgaag aacaaaaaat ggtctatgat gatttatcga tgcctgagaa
    16861 ggtagcaata tttcttatac aacttggcga agatgcaaca acttctgtgt tttcacatat
    16921 ggaaattgat gtaatcacag aaatttcacg ttatattgct atggctaaaa atgttgatag
    16981 atctgtagct actgcagttt tagaagaatt ttacactctg cttcaatcaa atcaatatat
    17041 taaaagtggt ggtttggaat atgctaaaga aatacttttt cgtacttttg gaccagagat
    17101 tgcaaataaa attcttgaaa aactcactaa aagtatggag aataatcaaa attttgctta
    17161 tttggcgcaa attaaaccac agcaacttgc agactttatt accaaagagc acccacaaac
    17221 catcgctctt attttggcac acatggattc tattcatgcg gcagaaactt tagagtattt
    17281 tagcgatgaa ttaagggctg aggtggttat aagaatggca aatcttggcg atatttctcc
    17341 aagtattatt aaaagagttt ctgcagtgct agaaagcaag cttgaaagtc ttacctctta
    17401 taaggttgaa gtgggcggcc caagagcagt agcagaagtg cttaatcgtt tgggtcaaaa
    17461 agcaagcaaa tcaaccatta cttatattga acaaagtgat gaacgcttag cagagactat
    17521 taaagagctt atgtttactt tcgatgatat acaaaaactt agcactcagg ctataagaga
    17581 aattttaaaa gtagccgata agcgtgattt aatgataggt ttaaaaggtg caagtgaaga
    17641 gttaaagcaa aaattcttag ccaatatgtc tacgcgtgca agcgaagctt ttcttgaaga
    17701 aatgggtttt ttgggtgctg tgcgtgttaa agatgttgaa gatgcacaaa gaaaggttgt
    17761 tgaagtggtg caaaaacttg cagaacaagg tcttgttcaa acaggcgatg cggatgaaat
    17821 gatagagtag gtgagagatg gttaatcgta gcaatgtaat ttctggtggg gcttctgatc
    17881 agcatgttgt tgaaggatat cgttttaaag ttatttcaga atttgataat catacaggtg
    17941 aaaaaaaaca tactcaaact ccagatgaag aaaatgctaa tatatcttta aatgacgaaa
    18001 aaccagtcga agaaaatcaa gtcattgcct ctacgcaagc tgttatggaa actcaaattc
    18061 caacatttca accaagcttt gttgaagatt tgcttaaaaa aacagatgaa atgtcaagca
    18121 atattattaa acttcaaatg caaatagaaa gccaagagaa tgaatttaat aaccgcttaa
    18181 attcagaact tgaaaatgct aaagaaaaat ttgccaaaga aggttatgag aaagcaaaag
    18241 aagaatttca aaaagaattg agtgatttta aagataagta tttaaaaagt atagccaaac
    18301 tcgataatgc ttgcgaaaat cttgaaaatt tcatagaaaa aaatgagaaa gaattagcag
    18361 atactgctat agatatcgct aaagaagtaa tcttaaaaga acttgaacta aattcaagta
    18421 agatagctta tgctttggct aaagatttaa tcggcgagct taagggtgct agtgcaattg
    18481 agcttaaggt taatgcagag gattatgagt atttaaaaga gcaatttgat cagaatgctc
    18541 acattaaaat aagtcttgat gatgcaatta gcaaaggaag tgttgttatt ataagtgacg
    18601 caggcaatat agaatccaat cttaactctc gtctaactaa aattaaaaaa atggtgaata
    18661 atgagtaaaa aatttgccca tactcaagaa gagttagaaa agctaagttt aaaagaatta
    18721 gaaaatttag cagcatctat gcgtgaaaaa atcatacaag ttgtgagtaa aaatggtggg
    18781 catttaagtt caaatttggg tgctgtagaa cttagtatag caatgcattt ggtttttgat
    18841 gcaaaaaaag atccttttat ttttgatgtg tcgcatcagt cttatacaca caagctttta
    18901 agcggaaaag aagaaatatt tgatacttta agacaaatca atggtttaag tggttataca
    18961 aaacctagcg agggagatta ttttgtagca gggcattcta gcacctctat ttctttggca
    19021 gtaggtgctt gtaaggctat tgctttaaag ggtgaaaagc gtattcctgt tgctttgatt
    19081 ggagatggtg ctttaagtgc gggtatggcc tatgaggctt taaatgaatt gggtgattct
    19141 aaatttcctt gcgtaatact tttaaatgat aatgaaatga gtatttcaaa accaattgga
    19201 gcaatttcaa agtatctttc tcaggctatg gcaacgcagt tttatcaaag ttttaaaaag
    19261 cgtattgcta aaatgttgga tatattacct gatagtgcta cttatatggc taagcgtttt
    19321 gaagagagtt ttaaacttat tactcctggg cttttgtttg aagaattagg gcttgaatat
    19381 atagggccta ttgatggaca taatttaggt gaaattattt ctgcattaaa acaagcaaaa
    19441 gctatgcaaa agccttgtgt gatacatgct caaaccataa agggtaaagg ctatgcttta
    19501 gccgaaggaa aacatgctaa atggcacggg gtgggagctt ttgatataga tagtggagag
    19561 agtgttaaaa aaagtgatac taaaaaatct gctactgaaa ttttttctaa gaatttgctt
    19621 gatttagcct caaaatatga aaatattgtt ggggttacgg cagctatgcc aagtggaaca
    19681 ggtcttgata agcttataga aaaatatcca aatcgttttt gggatgtggc tattgcagaa
    19741 cagcatgcag taacttctat ggccgctatg gcaaaagaag gatttaaacc ttttattgca
    19801 atatatagca cttttttgca gcgtgcttat gatcaagtga tccatgattg tgcgattatg
    19861 aatttaaatg tggtttttgc tatggatagg gcagggatag taggcgaaga tggggagacg
    19921 catcaaggtg tttttgatct tagtttttta gctcctttgc caaatttcac tcttttagcc
    19981 ccaagagatg aacaaatgat gcaaaatata atggagtatg cttatttaca tcaaggacct
    20041 attgcttttc gttatcctag agggagtttt attttggata aagaatttaa ttcttgtgag
    20101 ataaaacttg gtaaggcgca atggcttgta aaaaatagta gtgaaattgc ttttttaggt
    20161 tatggacaag gtgtggcaaa agcgtggcaa gttttaagag ccttgcaaga aatgaataat
    20221 aatgctaatt tgattgattt aatttttgct aaacctttag atgaagagct tttgtgtgag
    20281 cttgctaaaa aaagtaaaat ttggtttatt tttagtgaaa atgttaaaat tggcggtata
    20341 gaaagtttaa ttaataattt tttacaaaaa tatgatttgc atgtaaaagt tgttagcttt
    20401 gaatatgaag acaaatttat tgaacatgga aaaacaagtg aggtggaaaa aaatctagaa
    20461 aaagatgtca atagtttgtt gacgaaagtt ttaaaatttt atcattaaat aataaaaaat
    20521 attatttaat ataaacttct tttaataaaa attttattat tatttttact taaaaaagta
    20581 aggaataaat aaaatggaat tactacaaat gcttaaaaaa catgagttaa aagctactcc
    20641 gcaaagacta tgtgttttaa aaattttaaa aagacatgag catcctaata ttgatgaatt
    20701 atatacagaa attaaaaaag aatacccttc aatctcttta gcgacggttt ataaaaatct
    20761 taatacttta caagaacaag gtttagttgt tgaaatcaat gttttaaatc aaaaaacttg
    20821 ttacgatatc tatgaagaag aacatattca tgttgtttgc gccaaatgtg gtggtataga
    20881 ggatttaagt tttaaagatg ctaagcttta tgaatatcaa gagcatttag aaaaaaagat
    20941 aggcaatctc gtcaatcatc tgtctgtttg tgcttatgtt gatagttgca aaaagtgtca
    21001 ttaagcaaaa taaggttaaa ataacccata tattttaagg gttattttaa tggtttatga
    21061 aattcaaaaa aactttttac tatctgattg cactctttta gagaatttaa aaaaagataa
    21121 tatacctttt cgaaattcta aatttgaaac tttttatact caaataactt caaatcatag
    21181 tgttaaattt caaagttttt gcaatgaa
//
LOCUS       DARGEY010000013        20961 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.013, whole genome shotgun sequence.
ACCESSION   DARGEY010000013 DARGEY010000000
VERSION     DARGEY010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20961)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20961)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20961
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.013"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            145..873
                     /locus_tag="SF008_000478"
     CDS             145..873
                     /locus_tag="SF008_000478"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEG8232781.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQAQISILYDKGGNLGELFE
                     KSDVIIDFSSPSGTHELLNYARTIPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLRNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
     gene            875..2212
                     /locus_tag="SF008_000479"
     CDS             875..2212
                     /locus_tag="SF008_000479"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEG8232782.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYIVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNAEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(2215..3600)
                     /gene="fliI"
                     /locus_tag="SF008_000480"
     CDS             complement(2215..3600)
                     /gene="fliI"
                     /locus_tag="SF008_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HEG8232783.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEVTKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPINIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDTPNTPLPPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(3600..4172)
                     /gene="folE"
                     /locus_tag="SF008_000481"
     CDS             complement(3600..4172)
                     /gene="folE"
                     /locus_tag="SF008_000481"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEG8232784.1"
                     /translation="MQKKFEDCVKTILEIIGENPNREGLIKTPNRVFKAYEFLASGYT
                     QNVKDILNDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKI
                     PRLVEVFARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGIQKANSTTT
                     TSALRGIFLKNEKTREEFFSLINSAKQVRF"
     gene            4316..5650
                     /locus_tag="SF008_000482"
     CDS             4316..5650
                     /locus_tag="SF008_000482"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEG8232785.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RPGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKENKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLEGYEKLIPEYQTPKVSKKEIDEKKDELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFIPKTEKSEKVSKKEKEDK"
     gene            5650..6234
                     /gene="clpP"
                     /locus_tag="SF008_000483"
     CDS             5650..6234
                     /gene="clpP"
                     /locus_tag="SF008_000483"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HEG8232786.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            6270..6797
                     /locus_tag="SF008_000484"
     CDS             6270..6797
                     /locus_tag="SF008_000484"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEG8232787.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKF
                     DKEFKKKKKNHKKEK"
     gene            6794..8299
                     /locus_tag="SF008_000485"
     CDS             6794..8299
                     /locus_tag="SF008_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HEG8232788.1"
                     /translation="MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSAKIEKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFRFSHNHPLFASPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNINKTHILEALSFRARN"
     gene            8301..8999
                     /locus_tag="SF008_000486"
     CDS             8301..8999
                     /locus_tag="SF008_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEG8232789.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDKDESKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFHPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYFLVKKDYESYY"
     gene            8983..10353
                     /locus_tag="SF008_000487"
     CDS             8983..10353
                     /locus_tag="SF008_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HEG8232790.1"
                     /translation="MKAIIDNIKILEQNAINKGLDELILMENAGLNLAKLIKKEAKKI
                     RIQRKIRKVKILFLLGGGNNASDGLVALRNLKHAKAYKIGFKENTLFKKQEQILQNYA
                     FKFCKKEPNFKKFHIIIDCILGTGSNRCLDEKTSLIIQKVNQSKALKIACDIPTNLGF
                     YPCFKADITFCMGALKEILLEDFAKEFVGRIKIANLGIRSKKFYPNSQAFLLEKKDLK
                     TIDRKINANKGNFGHIYIVANASAGTLAGLGALNFGAGLVSLVAQKSFSPLLMLKEKI
                     ENNASAIALGMGLENLDFLKDEILQNTPLILDANCFLSEALLWYLNRKDVVITPHPKE
                     FIKLYKMCFDENLDIETLQKNRFFYARKFSQNYDCVLVLKGANPIIVQKEKLFVVNLG
                     NQALAKGGSGDVLSGMIAAHLGFGFSALEAAKNATLAHGLVAKKYKFNKNSFDALKLI
                     KGLKCL"
     gene            10344..10910
                     /gene="purN"
                     /locus_tag="SF008_000488"
     CDS             10344..10910
                     /gene="purN"
                     /locus_tag="SF008_000488"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEG8232791.1"
                     /translation="MLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEVVLCICNKKD
                     AFGVQRAKKFGLDTVIVDHKAYNTREEFDTILVQKIKESGANLTVLAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDSGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            10982..11701
                     /locus_tag="SF008_000489"
     CDS             10982..11701
                     /locus_tag="SF008_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEG8232792.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPPEHR
                     DKGRILGLAFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEESQSHFKASNKLWIVVAEIAVIDIVFSLDSVITAVGIAQDVTIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQRKEKNG"
     gene            11694..11903
                     /locus_tag="SF008_000490"
     CDS             11694..11903
                     /locus_tag="SF008_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HEG8232793.1"
                     /translation="MAKDTNGIELNTGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            11913..13097
                     /locus_tag="SF008_000491"
     CDS             11913..13097
                     /locus_tag="SF008_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HEG8232794.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNALRLLSGSVKNI
                     VSEYKILNVKNDEDLSKILLKLLEMRMQKGEFSIINAYNETLKIYKDLAKQYRYKIYV
                     IVFDSSLKQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSRDWKKCLYQ
                     MPNLSKYKKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLK
                     ICEKENVCLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDARKLYPHLK
                     ECLYYKFQNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKVANQFCNFT
                     SDNLYQIFGHRNKEKLPMKIAKRVFLCEGKIDDDGYLRVVTLDEKGFECIEIKNQIYK
                     KK"
     gene            complement(13111..14469)
                     /locus_tag="SF008_000492"
     CDS             complement(13111..14469)
                     /locus_tag="SF008_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEG8232795.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSMLMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTIAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWMLFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELNHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPMVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
     gene            complement(14568..15773)
                     /locus_tag="SF008_000493"
     CDS             complement(14568..15773)
                     /locus_tag="SF008_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HEG8232796.1"
                     /translation="MIMFSSFFKSKKWALWAYLGLFLLLFFLYIQTSLNVAINSWYSD
                     FYNVLQKPKIELLDSNSTQKIEENLENNATLIQEANQRAEQNFQKANFINKGALYYYQ
                     NLLEYFFNSRAMIEKPNYSASDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREA
                     MTFSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIKALMTLVAFIPILWSL
                     SDVVSKALFANLSENSFFYFLKNIDGLLVYIALLISLGGLVVSWFVGIKLPGLEYNNQ
                     KAEAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMI
                     VIVPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSVFITNWTTITQLRSIYKRLKE
                     FEKNISYKS"
     gene            complement(15819..16565)
                     /locus_tag="SF008_000494"
     CDS             complement(15819..16565)
                     /locus_tag="SF008_000494"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEG8232797.1"
                     /translation="MKSSVIFGFVLSLILHTLVLMFSLFSFYIQEKSSGVDFKQGAEF
                     TSIMMVSEPPIGELKEVSIDQKKSNSQDKNKKQDERISLNSQDKNAVLKVQKKIEKQD
                     ENQAQKEIANASENSKFKNESLSAPLQSNEDKTQTIVSGNAKEQVKSYQALLMAHLTK
                     FKKYPQEAIMQKQEGVVRIRVSIDESGNVLSKELKKSCPYAALNDEALSLFKRASPLP
                     KPPKEMLKNGDKISFVMPIDYNIKDYLGKK"
     gene            complement(16567..16977)
                     /locus_tag="SF008_000495"
     CDS             complement(16567..16977)
                     /locus_tag="SF008_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEG8232798.1"
                     /translation="MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIK
                     IELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLSLENLSSALDIKTKGNKEEIIYF
                     HIDKSVKYEDIMQVMQKLKENGYGKIALSSKKMD"
     gene            complement(16964..17725)
                     /locus_tag="SF008_000496"
     CDS             complement(16964..17725)
                     /locus_tag="SF008_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG8232799.1"
                     /translation="MLKKMFLFCFLLLNLNAEVNATDTNLSFDSPKIETEAPKIEFSL
                     SSLYQNADEVVKGVIYILVLFSILAWTVFISKLMQFYFMKKNLDLSIQKIKELKNLNE
                     LDQTKDFAGVLSLEIQDELEKSEYKNDHIKERMELRLQNTISKQITASKNGLSLLASI
                     GASAPFIGLFGTVWGIMNAFIGIANLGNASLAVVAPGIAEALFATAFGLIAAIPAVLF
                     YNYLTRKNLKLMHHLDELANFVYILFHRSYFNDKN"
     gene            complement(17737..20004)
                     /locus_tag="SF008_000497"
                     /pseudo
     CDS             complement(17737..20004)
                     /locus_tag="SF008_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343636.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(20001..20852)
                     /locus_tag="SF008_000498"
     CDS             complement(20001..20852)
                     /locus_tag="SF008_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HEG8232800.1"
                     /translation="MKFYTILSILFISFMLSACAVLQKSSPLQENKDFYILDTHTQKK
                     ISFEDMILELLKADVILLGEKHDEVKHKISQVMIFNALEGNLSSQNINFDVALEMLAS
                     TEQNHLDKAFKNKKTIKANELTNALNWDKVWKWKDYEQFVNVVFYSKSKILGVNLSRS
                     EITSIYNGAQPLKGYVSTTNEVKKQLFDIISLSHKLNPEENKELLDKLVEIQQFKDRR
                     MADVLVHHVNKVLLLAGSYHTSKKIGIPLHIQDFKSSKKIVVVNLSYGEIDLKDSDYV
                     LIYKGEE"
BASE COUNT         7470 a         3127 c         3328 g         7036 t
ORIGIN      
        1 aaaattttat catagcaagg gcttaggaga agaagcaaaa ttgttagata atttatataa
       61 attaaaaaac cataaagctt aattttatta tttaaaattt acaaaataaa tgctaaaatc
      121 aatattttat tttcaaggaa aaagatgatt aaaataggaa tttatggcgc taaaggacga
      181 atgggaaaac agattgaaga atgtttaaaa agcgaaacac aagcacaaat ttcgatactt
      241 tatgataagg gtggaaattt aggagagctt tttgaaaaaa gcgatgtgat tattgatttt
      301 tcttccccaa gtggaactca tgagctttta aattatgcaa gaactatacc taaacctttg
      361 gtaataggta caacagggct tgatgagaaa attttacatt tgatgcaaag tgctagtgaa
      421 gtgatgccga ttttttatgc gaccaatatg tctttaggtg ttgcggtttt aaactatctt
      481 gctagtaaag ccagtcaaat gctaagaaat tttgatatag aaattttaga aatgcatcat
      541 cgccataaaa aagatgcacc aagtggtaca gctatgactt tagctcaaag tgtagcaaaa
      601 gctagaaatt tagaacttga aaaagtaaga gtaagtggaa gagatggcat tataggtgaa
      661 agaagcaaag atgagattgc cgtgatgagt ttaaggggtg gcgatatagt aggacgtcat
      721 acagtaggtt tttatgaaga tggagaattt ttagaactta atcataccgc tacttcaagg
      781 gcgacttttg ctaaaggtgc gattaaaatc gctatttggc ttagtaagca agaagcaaaa
      841 atgtattcaa tcaatgattt tttaggaatt taaaatgtgt gcagttgtag gagttattaa
      901 ttcaaaaaat gctagtactt atgcgtatta tgcgcttttt gctatgcaac accgtgggca
      961 agaggcaagt ggtattagtg tgagtaatgg taaaaatatt aagactatta aagctaaagg
     1021 tgaagtgagt caaattttta atcccgataa tttaaaaact ttagaaggtg aaatcgctat
     1081 agggcataat cgctattcta cagcaggaaa ttcaagttta aacgatgccc aacccatagc
     1141 agccacttcg gttttaggtg atattgcttt agcgcataat ggaaatttag tcaataaaga
     1201 agaagtaaga tcaagactta ttcaagatgg ggctattttt caaaccaata tggacacaga
     1261 aaatgttgtt catcttatcg caagaagtaa gcaagaaagt ctaaaagata gatttattga
     1321 gagcttaaaa gaatgtatag gagcttattg ttttgtttta gcaagcaaag ataaacttta
     1381 tattgtaaga gatcctcatg gggtgcgtcc tttgtcttta gggcgtttaa aagatggagg
     1441 ctatatagtt gctagtgaaa cttgtgcttt tgatcttata gaggctgaat ttattcgtga
     1501 tgttaaacca ggggaaatgc ttatttttac tcagggaaat gataaatttg aaagcataga
     1561 acttttttct caaactccta gaatttgcgc ttttgaatac atttattttg ctagacctga
     1621 tagcatagta gaaggtaaaa gcgtgtatga agtgcgtaaa aaaatgggcg aagctttagc
     1681 taaaaaattt gcttataaag cagactttgt cgtgcctgtg ccagatagtg gagtaagtgc
     1741 agctataggt tttgctcaat atttacaaat ccctcttgaa atggcaatag taagaaatca
     1801 ttatgtagga agaactttta tagagccaac tcaagagctt agaaatttaa aagtaaaatt
     1861 aaagcttaat cctatgcgta aagttttaga aggcaaagaa attgtagtca ttgatgatag
     1921 cttggtgcgt ggcactactt ctaaaaaaat aatttcctta cttcgtgctg caggagcgag
     1981 taaaatccat cttgccatag cttgtcctga gatcaaattt cctgatactt atggtataga
     2041 tactccaact tttgaagaac ttatcagcgc aaataaaaat gctgaagaag tgcgtgaata
     2101 tgtagaagct gatacgctaa gttttttaag catagaagag ctaactcaaa gcataggcga
     2161 tgaaagaaaa tattctttaa tcagttttga tggagattat tttattaaat aattttattt
     2221 taaattagga ttaggtaagg ttgcacttgc acttcctaca tttatatttt gagttggtgg
     2281 caaaggagta tttggtgtat caatttgact taaaagctct aaagtttgat taaattcgaa
     2341 gctttcttca ggattttgtc ctaagaattt ttgcataaat tcttttttag aaatagcttc
     2401 atcaagttct ttatcacttc ctttctgata agcaccgatg cgaagcaata cttcattttc
     2461 ttttaaaagc gagtttaaac gcttaaattt tcttgcccaa agtttgtgtt caggacttat
     2521 aatatcgctc attacccttg aagcggagtt ttgtatatta ataggaggat aaattccaaa
     2581 gtctgttaat tcacgactta aaacaatgtg tccatctaag atagaacgac tttgatcggc
     2641 gattggatcg ctcatatcat caccatccac taaaacggta aaaaaggctg ttatagtgcc
     2701 tttaccttct tctttacccg ttctttccat gagttgaggc aaaagactta aaacacttgg
     2761 cggataacct ttggttgtag gaggctcccc aagagctagt cctatttctc tttgcgccat
     2821 agcaaaacgc gttacactat ccatgataaa aagtacatct ttaccttgtt ctttaaaata
     2881 ttctgccaca ctcattgcac aaaaagcacc gtatttacgc atcaaagcac tatcatcact
     2941 tgtagcaaca ataatcactg tatcatcgag ctttccgcct aaattttttt gtataaattc
     3001 aggaatttca cgcccccttt ctcctatgag agccactact tttataggag ctttggaatt
     3061 tttaactatc attcccataa gagtggattt tcctacccca cttcctgcaa aaataccaag
     3121 tttttgtcct acaccacaag ttaaaagcgc gtctatggtt ttaacaccca cgggaaaaac
     3181 ttcttctata agccctcttt tcatggcatc aataggtgca cgcattatag gcatatattt
     3241 ggttacttct atagctcctt taccatcttt tgggcgcata aaaggatcta ctactctgcc
     3301 taaaagttca tcgctaacgc ctatttgcat acctgcatca cttatgaaag cacgatcgcc
     3361 tattttgaaa ccttctataa aagaaaaagg gcttaaatag ctaaattgtt ccttgatttc
     3421 tacgaccata gctagagtgt ttaaattttc attttcattg gaaactagct tcactatatc
     3481 tccaacccct gttttaagcc cacgaatttc tatactcgta gcagaaattt ttgtaatctc
     3541 tccaaagata gcacttaaat tttctttacc aagtttggag cgtagttttt caagattcat
     3601 taaaatctta cctgtttagc agagtttatg agagaaaaaa attcctctct ggttttttca
     3661 ttttttaaga aaattccacg taaagctgaa gttgtagtgg tggaattagc tttttgtatt
     3721 ccacgcattt caacacacat atgtcttgct tctatgacta cacccacacc ttttgcatca
     3781 acattttcca ttaaagcttg tgcgatttgt tcagtaagtt gttcttgaat ttgaagtctt
     3841 cttgcaaaca cttctacaag gcgtggaatt ttgcttaaac ctactacttt tttattaggg
     3901 atataggcta catgagcacg cccaaaaaaa ggtaaaagat gatgttcgca aagactataa
     3961 aattctatat cacgcaccaa aaccatttca ttattagagc tttcaaataa agcatcattt
     4021 aaaatgtctt tgacattttg cgtataacca ctagcaagaa attcataagc tttaaaaaca
     4081 cgatttggtg ttttaataag cccttcacga tttggatttt ctcctataat ttcaagtatg
     4141 gttttaacac aatcttcaaa ttttttttgc aaatttttct ccaaaaatat tttttatatt
     4201 ttaataataa tgtaatattg caattttatc ataaattact ttaaaatttt atgcaagtaa
     4261 taaggaaaaa tttgctatca ttgaaggcaa attttatttt ataaggaaaa aaactatgga
     4321 agtaaaggca aagcaactag attctgttaa tgcgactgct agtgtaaaaa ttccttcagg
     4381 aatgatcaaa agtgaagtag aaaatttagc aaaaaaagct tctaaaagtg taaaaatgga
     4441 tgggtttaga ccaggaaaag ttcctgtaag tgccgtactt aaaagatatg aaagagagct
     4501 cactcaagat gcagaacaaa atctttttaa atccgctgta aatagcgctt tacaagaact
     4561 taaaaaagaa aataaagagc ttgtaggtga gccatatttt gaaaaatttg atcgtaaaga
     4621 tggagaaatt attgctgaat taatactttc ttttaaacct gaaatcaaac ttgagggtta
     4681 tgaaaaactc atccctgaat atcaaactcc aaaagtaagt aaaaaagaaa ttgatgagaa
     4741 aaaagatgaa cttttaaagc gttttgctac tcctgaagct ataaaaacaa aaagagcttt
     4801 aaaagaaggt gattttgcaa aatttgattt tgaaggtttt gtagatgata aagcttttga
     4861 aggtggtaaa gctgaaaatt atgttttaga aattggttct aagcaattta ttccaggttt
     4921 tgaagatggt atggtgggaa tgaaaatagg tgaagaaaaa gatatcaaag taactttccc
     4981 taaagaatac ggcgcagcgc atttagcggg taaagatgca gtatttaaag taaaactaca
     5041 tgaaattcaa gagcttaaaa ttccagaact tgatgatgaa atgcttaaaa aacttttacc
     5101 aggagaagaa aaagctagtg ttgaagtttt agatgaaaaa ttaaaagagc aaatcaaaaa
     5161 tgaaaaactt ttcaaacttg taaatgatga attaaaaggc aaatttgcag atgctttgat
     5221 tgaaaaatat aattttgatt tacctaaagg catagtagaa caagaaactg atatgcagat
     5281 gcgtgcggct tttaatactt ttagcgaaaa agaaattgaa gagcttaaag caagtaaaga
     5341 aaaatatcaa gaaaaacgtg attcttttaa agaagaagca caaaaaagtg taaaacttac
     5401 ttttatcatt gatgaacttg caaaattgcg taagattgaa gtaaatgatc aagaattgat
     5461 tcaagcgatt tattttgaag catatcgcta tggtatgaat ccaaaagagc atttagaaaa
     5521 ctataaaaaa caaggagctt tgcctgctgt gaaaatggct ttaattgaag aaaaactttt
     5581 taatgatatt tttataccaa aaacagaaaa atcggaaaaa gtgagcaaaa aagagaaaga
     5641 agataaataa tgtttattcc ttatgttatt gaaaaatcta gtcgtggtga aagaagttat
     5701 gacatttatt cacgcctttt aaaagataga attattatgc taagtggtga aattcatgat
     5761 gaacttgccg cttctatcgt agcacaactt ctttttttag aagctgaaga tcctacaaaa
     5821 gatatttatc tttatatcaa ttctccaggt ggtgtaatta caagtggttt tagtatttat
     5881 gatactatga actatatcaa acctgatgtt tgtacgattt gcataggaca agctgcttct
     5941 atgggagcat ttttgcttag ttgtggcgca gaaggaaaac gttttgcttt gcctaattca
     6001 cgcattatga ttcatcaacc tttaggtgga gctagaggtc aagccacaga tattgaaatt
     6061 caagccaaag aaattttaag actcaaaact atacttaatg atattttggc aaaaaatact
     6121 aagcaaaaag ttgcaaaaat agcaaaagat acagaaagag attttttcat gtcagcacaa
     6181 gaagctaaag aatatgggct gattgataag gttttggaaa aaagttttaa atgatttctt
     6241 tggagatcat ttaaaacaaa ggttttttaa tggttagaaa aattatcacc tatcccaatc
     6301 ctagactttt tttaaactct gaaattgtaa ataaatttga tacagaactt cacaccttgc
     6361 ttgatgatat gtatgaaact atgatagcaa gtaatggagt aggtttagca gctattcaag
     6421 tggatattcc tttgcgtgtt ttacttgtaa atatttttga tgaaaacgat gaacaaaaaa
     6481 aagaagattt gctagagatt atcaatcctg aaattattcc tttagatgaa gaaatgatca
     6541 cttgcacaga agggtgtttg agtgtgccag atttttttga agaagtgaaa cgctataatc
     6601 atatcttgct taaatatcaa gatcgctttg gagaatttaa agaacttgaa gcaaaaggtt
     6661 ttttagctgt ggctattcaa cacgaaaatg atcatttaaa tggacattta tttatagaaa
     6721 aaatttcctt tgctaagcgt caaaaattcg ataaagaatt taagaaaaag aagaaaaatc
     6781 ataaaaaaga gaaatgaaaa aactaaagtg cataagcttt catgaaggct tagacattat
     6841 agaggtagaa tccactttta caagaggttt gccaaattta agcatagtag ggcttgcaag
     6901 tacagcgatt aaggaaagtg tcgaacgcat caaagccaca cttttaagtt gtgattttgc
     6961 ttttcctgct aaaaaaatca ctatcaatct tagtccttca ggcatcccaa aaaagggatc
     7021 acattttgat ttggctatcg ctttattaat ccttttgcaa aatgaagaat tagatgactt
     7081 ttttgtagta ggagaattag gacttgatgg aagtattaaa agcacaaatg agcttttttc
     7141 tttgcttttg tttctctctg ctaaaattga aaaagctaaa atcgttgttc caaaaagtat
     7201 agcacaaaaa gcttccatga taccaaattt agaggtttat ggacttgaaa atttaaatga
     7261 agcaatagag ttttttaaag aaaaaaatta tgaaaatttt cgtttttctc acaatcatcc
     7321 tttattcgca agtcctttac aaatagaaaa tgaaattttt ttacaaaata tggattttaa
     7381 acttgatttt aaagatatca aagggcagga aaaagctaaa agagcttgta tgatagctgc
     7441 tttaggtatg cataatatct tatttgaagg aagtccagga agtggtaaaa gtatgtgtgc
     7501 taaacgcctt gtttatatca tgcctcctca aagtttaagt gaaattttaa tgcaaaatgc
     7561 ttatatgtct ttagattcaa aagattgtga atttactaaa attcgtgctt ttcgtcatcc
     7621 tcatcatact tctacaagag caagtatttt tggcggagga acaaaaaatg ctagaattgg
     7681 agaagtcgca cttgcaaatg gtggagtatt attttttgat gaatttccac attttaataa
     7741 gcaaatcata gagagtttaa gagagccttt agaggatcat aaaattcata tttcaagagt
     7801 aaattctaaa atcacttatg aaacaaaatt tagctttata gctgcccaaa atccttgtcc
     7861 ttgtggaaat ttattttcta aaaatctttc ttgtgtttgt agtgaaaatg agattaaaaa
     7921 atacaaaaat cacatttcag ctcctattat ggataggatt gatctttatg tagctatgga
     7981 tgagatcagc aaggatgata aaacgagtat aagttctaaa gaaatgagtg aaaaaatttt
     8041 acaagctttt atttttagta aaaaacgggg gcaaaaagaa tttaatggga aattaaaaga
     8101 tgaagattta agtcgttttt gtgtattgga aaaagatgcc aaagatacgc tagatttagc
     8161 aatttcacgt tataatcttt ctttgcgatc gcttaataaa attttaaaag tttcaagaag
     8221 tatagcggat ttagaacaaa gtcttaatat taacaaaacc catattttag aagctttaag
     8281 ctttagagca aggaattaaa atggaaaata aaagtatagc tatctttata gatgcagaaa
     8341 atatccctgc aaaatacgct aaaagtattt ttgatattgc ttcagattac ggagaggtta
     8401 ttattaaacg catttatgga gactggactc aaaaaaatat acaaggttgg agagagcaaa
     8461 ttgctgaata ttctttaatc gctatgcaac aatttaattt tgcagccaac aaaaactcaa
     8521 gcgatatgta tttaatcact gaaatcatgt ccatatttta tgaaaaaaac atagatattt
     8581 ttgttattgt ttcaagcgat agtgattata cttcactcat tcaaaaatta agggaaaata
     8641 aaaaacaagt tataggaatg gggcttgaaa aatctataaa atcctatgta aatgctttta
     8701 gtgaattttt ttatttagat aaagatgaga gtaaaaaaga agatatttta agtaaggatt
     8761 atttaagagc tttaatcaat atcaccgaac aacttatcga tgaaaaaggg cgtgccgaat
     8821 acgcacaaat ccgtactaat atgaaccgca aatactcgga ttttcatccg caaaattatg
     8881 gttttaagaa ttttcgtgct ttgatccaga aatttttacc caaaatgaaa aaatttgaag
     8941 aagaaagaga aaaaaatata tattttttgg tgaaaaaaga ttatgaaagc tattattgat
     9001 aatataaaaa ttttagaaca aaatgctata aataaaggct tagatgaact tattttaatg
     9061 gaaaatgcgg gattaaattt agctaaactg attaaaaaag aagctaaaaa aattcgcatt
     9121 caacgcaaga ttagaaaagt aaaaatactt tttttattag gcgggggtaa caacgcttca
     9181 gatggcttgg tggctttaag aaatttaaaa cacgctaaag cttataaaat aggctttaaa
     9241 gaaaatacgc tttttaaaaa acaagagcaa attttacaaa attatgcttt taaattttgt
     9301 aaaaaagaac ccaattttaa aaaatttcat attatcattg attgtatttt aggtacaggt
     9361 tcaaatcgtt gtttagatga aaaaacaagt ttaattattc aaaaagttaa tcaaagtaag
     9421 gctttaaaaa tagcttgtga tatacctaca aatttgggat tttatccttg ttttaaagct
     9481 gatattacat tttgtatggg agctttaaag gaaattttac ttgaagattt tgctaaggaa
     9541 tttgtaggaa ggattaaaat agccaattta ggcattagat ctaagaaatt ttaccctaat
     9601 tctcaagctt ttttgcttga aaaaaaagat ttaaaaacta tagatagaaa aatcaacgcc
     9661 aataaaggaa attttggcca tatttatata gttgccaatg caagtgctgg aactttagca
     9721 ggacttggag ccttaaattt tggagcaggt cttgtttctt tagtagcaca aaaaagtttc
     9781 tcgcctcttt tgatgttaaa agaaaaaatt gaaaataatg caagtgctat tgctttaggt
     9841 atggggcttg aaaatttgga ttttctaaaa gatgaaattt tgcaaaacac tcctttgatc
     9901 ttggatgcaa actgcttttt aagtgaagct ttgctttggt atttaaacag aaaagatgtt
     9961 gttataaccc ctcatccaaa agaatttata aaactttata aaatgtgctt tgatgagaat
    10021 ttagatatag aaacattgca aaaaaatcgc tttttctatg ctagaaaatt ttcacaaaat
    10081 tatgattgtg ttcttgtttt aaaaggagca aatcctatta ttgtgcaaaa agaaaaatta
    10141 tttgttgtaa atttaggaaa tcaagcctta gctaaaggtg ggagtggaga tgttttaagt
    10201 ggaatgattg ctgcacattt aggttttggt tttagtgctt tagaagcagc aaaaaatgct
    10261 actttagctc atggacttgt tgcaaaaaaa tataaattta ataaaaatag ctttgacgct
    10321 ttaaaactta tcaaaggatt aaaatgcttg taaaattagc tgtacttttt agtggaaatg
    10381 gaagtaattt agaaaatatt ttagaaaaac ttcataaaaa aaccataggg gaaaatacct
    10441 atgaagtagt actttgcatt tgtaataaaa aagatgcttt tggtgtacaa agagcaaaaa
    10501 aatttggtct tgatactgtc attgttgatc ataaggctta taatactcgt gaagaatttg
    10561 atacgatttt ggtacaaaaa atcaaagaaa gtggagcaaa tcttactgta ttagcaggtt
    10621 ttatgagaat tttaagtcct gtttttacaa aaaatattaa ggcaattaac cttcatcctt
    10681 ctttattacc cctttttaaa ggagcacatg cgattaaaga aagttatgaa agtgatatga
    10741 aagtggctgg agtcagtgtg cattgggtca gtgaagaact tgatagtgga atgattatag
    10801 ctcaaaaagc ttttgaaaaa agaaatttga gttttgaaga atttgaagaa aaaattcata
    10861 gtctagaaca tgaaatttta cccttaagtg tgattgaaat tttttcttaa agaattaaag
    10921 gtatttgctt taaaactata aaatatcgct ttaaaaaatt ttaaaatttt caaggaaatt
    10981 tatgtttgaa tggatattta gtattgatgc ttggattact ttagctactt taagtgctct
    11041 tgaaattgta ctagggatag ataatatcat ttttttagct attttagtaa gcaaactacc
    11101 ccctgaacat cgtgataaag gacgtatctt aggtttagct tttgcaatga ttacaagaat
    11161 tttacttctt ttatctcttt tttgggtaat gaaacttgta acacctttgt ttagtgtatt
    11221 gggcaatgaa atttcaggaa gagatctagt tcttttacta ggtgggcttt tcttgattgt
    11281 aaagtctatt aaagaaatta aagagcaaat ttctcatcaa gaagaaagtc aaagtcattt
    11341 taaagcaagc aataaacttt ggatagttgt agctgaaatt gctgtgattg acatagtgtt
    11401 ttcgcttgat agtgttatta ccgcagtagg aattgctcaa gatgtaacca tcatgattat
    11461 cgctgttatt atcgcagtag ctgtgatgct ttttgcttct aaacctatag cagattttgt
    11521 tgaaaaatat ccaagcatta aaattttagc cttagctttt ttggtgctaa taggcgtagt
    11581 tttagttgct gaaagttttg atattcatat tgataaggca tatatttata ccgctatggc
    11641 ttttgcttta gtggtgcaaa ttttaaatat tttagatcaa agaaaggaaa aaaatggcta
    11701 aagacactaa tggaatagaa cttaacacag gtgatagcgt gagtgtaata aaagatctta
    11761 aggttaaagg tgcaagtaca actttaaaac gtggaactac tataaaaaat attaagctca
    11821 cttctaaaga aggtgaaatt gaggctagag tagataaatt tggcgttatt gttttaaaaa
    11881 ctgaattttt aaagaaaatc taggcaaaga atgtgcgaat cttacttgtt ttaagaggga
    11941 attattacgc aggacaagaa gaatttatca aaaataataa acttcaaaat tatacacttg
    12001 atttaaatgc tttgcgtctt ttatcaggaa gcgttaaaaa tatagtcagt gaatataaaa
    12061 ttttaaatgt taaaaatgat gaagatttga gtaaaatttt actcaaactt ctagaaatgc
    12121 gtatgcaaaa aggtgagttt agcatcataa acgcttacaa cgaaacatta aaaatttata
    12181 aagacttagc taaacaatat cgctataaaa tatatgttat tgtttttgat agctctttaa
    12241 aacaatgtca agaaaaaaat cttttagaag ctaaaaaaaa tggatatatc attccttatg
    12301 ctcttttgga aaaaactcaa gatttgctca aaaaaaatcc aaaaaaatac ccaattttag
    12361 actcaagaga ctggaaaaaa tgtctttacc aaatgccaaa tttaagcaaa tacaaaaaaa
    12421 ttcatcatat aggagattta caaggttgct atagtgtttt aaaagaatac attaaaacaa
    12481 tcaaagaaga tgaattttat atatttttgg gagattatat caacagaggt atagaaaatg
    12541 gcaaagtaat aaaatttctt ttaaaaattt gcgaaaaaga aaacgtatgc ttattagaag
    12601 gaaatcacga aagacatctt ataaaatggg ctaatggaga attgtcaaat tccaaagaat
    12661 ttaatgaaaa tactttaaag gattttagaa aagaaaaact tactccaaga gatgctagaa
    12721 aactctatcc tcatctaaaa gaatgtttat actacaaatt ccaaaataaa ttcatatttt
    12781 gttcacatgg aggagtaaat tttataccct ccaaacctga aaaaataagt tttataccaa
    12841 gccatgactt tatttatggt gtaggtggat atgaagacag tcaaaaagta gcaaatcaat
    12901 tttgtaattt cacctcggac aatctttatc aaatctttgg acacagaaat aaagaaaaac
    12961 ttcctatgaa aatagccaaa agagtatttt tatgcgaggg taaaatagat gatgatggat
    13021 atttacgcgt agttacacta gatgaaaaag gttttgagtg tatagaaatt aaaaaccaaa
    13081 tttacaaaaa gaaataaagc ctaaagaggc ttattcttca tctttatttg tttttttaac
    13141 caccttaaca cgctctatag aattcccatc cattttttta acttcatagt aacaaagttc
    13201 atcttcaatg cgatctccta ccataggcaa gcgtcctaaa agattaaata cataaccacc
    13261 tatagtaact tgttctaaat cctcatcata gtttattaca agcatttctt caacagtttc
    13321 tatatcgcat cgtccttgaa attcatagat attttcagca agttttttat agctgtcttc
    13381 ttcatgctcg cttttaattt cgccaataat ttcttccata atatcttcca tggttaaaat
    13441 tccagcagtt ccaccatact catcaactac taatgcagta tgagagcgtt ctttattcat
    13501 cattacaagt acttttgaaa tgctgatatt ttcaggaacc aaaatcaaag gtttaacaaa
    13561 agtatctaaa ttttgacttt tatggtttaa ttcattttgt attatatctc gtatgtgtat
    13621 catacctaaa atagtatctt tagaaccatc aatataagga aagcgagtat gtttatgctc
    13681 acaaatgatt tgcatatttt cttcgtaact tttttgttta tttagacaaa tcatatcttt
    13741 tctaggagtc ataatctctt tagcaacagt atctgaaaaa tcaacagcat tgcgtatgat
    13801 ctctgtttca aattcatcta aaactccacc tttttgactc tcacttgcta tgattttaat
    13861 ttcttcttcg ctatgagtta gctcgctttc tttagcaggt tttattccaa aaagtttcaa
    13921 acttatagct gctaaaaaat cgaaaatttt aatacaaggc aaaaagagca tccaaaacca
    13981 atgaagcggt ctagctataa ataaaaccgc tttatctgca actgcaatag ctatactttt
    14041 tggcacaagt tctcctaaaa ccacatgtaa aagagtaata atgctaaaag caataatgaa
    14101 agctatagta tggataataa cagtgctaaa accaagatta ataagcggaa tttctagcat
    14161 ttttgcaata gcaggctcac ctatccaacc aagagctaga gaacttaaag taattcctaa
    14221 ttgacaagca ctaagatacg tatcaagcct tgaagtaacc tccaaagctt tcttggcacc
    14281 agcttttttt tcttttacca tctcttcaag cttggaacga cgtactttaa caatactaaa
    14341 ttcagacaaa acaaaaaaac catttaaaaa cactagagca agtgcaacaa caaccataag
    14401 catagaatat cctgcatcaa aagatgctgt agaagtttgg tttaaatcca aaacctgact
    14461 ggggtccaat gaagctcctt aagaaataaa atattattaa accttattat acacaattaa
    14521 aagtaaattt aatatttgaa ttttttcttg cattttataa gaaaaaacta agacttataa
    14581 gaaatatttt tctcaaattc ttttaaacgc ttatatatac ttctaagttg agtgatagtt
    14641 gtccagtttg tgataaaaac actaaaagag cttcgcactt gatcaaatgc attattaatc
    14701 tgcattacaa taccaagtcc tatagctcca gcaaaaagcc ctggtgccat gattaaaaat
    14761 ggcactataa ctatcatttg ctcaaataaa atgagccaaa tattaaaata tccataatgt
    14821 aaaaaaagtc ttttatagtt aaatttaagc cctgtaaaaa gctctatcat agtctcattt
    14881 ttagcgtatt ctttgcgatt atcctcagca taaacaagct cttttctaaa agctgcttca
    14941 gctttttgat tgttatattc aagtccagga agcttaatac ctacaaacca tgacacaacc
    15001 aagcctccta aagaaatcaa aagtgcaata taaacaagca aaccatcaat gttttttaaa
    15061 aaataaaaaa aagaattttc gcttaaattt gcaaataaag ctttactcac aacatcactt
    15121 aaactccata aaatcggaat aaatgctaca agggtcatca aagcttttat aaaactaagt
    15181 cctaaactct ctacgatttt agaaaaatta taagtatctt cttgaattct ttgcgaactt
    15241 ccttctatat tatcatcttt atttttccaa aattttaaat aagaaaaagt catagcctca
    15301 cgccacttaa aagcatagac gctagcaaaa tagatattaa ttgtagcgat taaaacataa
    15361 ggaatagcaa tagccaaaaa aactaaaatc aaagcataaa aatcacttgc tgaataattt
    15421 ggcttttcaa tcatagccct agagttgaaa aaatattcta ataaattttg ataataatac
    15481 aatgcgcctt tattgataaa attagctttt tggaaatttt gctcagctct ttgattagcc
    15541 tcttggatta aagtggcatt attttcaaga ttttcttcta ttttttgcgt agaattagaa
    15601 tccaaaagtt ctatttttgg cttttgtaaa acattgtaaa aatcactata ccatgaattg
    15661 atcgcaacat ttaagcttgt ttgtatatat aagaaaaata acagtaaaaa aagtcccaaa
    15721 taagcccata aagcccattt tttactttta aaaaacgaag agaacataat catcaccttt
    15781 aaaataaaaa ttctaataaa ctatttttaa tgaaaagttt attttttacc taaatagtct
    15841 ttaatattgt aatcaatagg cataacaaaa ctgattttat caccattttt taacatttct
    15901 ttaggcggtt ttggcaatgg agaagctctt ttaaataaac ttaaagcttc atcattaagc
    15961 gctgcataag ggcaagattt tttaagctct ttgcttaaga catttccgct ttcatcaatg
    16021 cttacgcgaa ttcttacaac gccttcttgt ttttgcatta tcgcttcttg aggatatttt
    16081 ttaaatttag tcaaatgagc cataagcaaa gcttgatagc ttttaacttg ttctttggca
    16141 ttgccactta ctatagtttg tgttttatct tcattacttt gtagcggagc actgagcgat
    16201 tcatttttaa attttgaatt ttcacttgca ttagctattt ctttttgagc ttggttttca
    16261 tcttgctttt caatcttttt ttgaactttt aatacagcat ttttatcttg agaattaaga
    16321 cttattcttt cgtcttgttt tttgttttta tcttgagaat tactcttttt ttgatcaatc
    16381 gaaacttctt ttaattcccc gataggaggc tctgatacca tcataatgga agtaaattcc
    16441 gctccttgtt taaaatcaac accacttgat ttttcttgaa tataaaaaga aaaaagggaa
    16501 aacattaata ctaaagtatg caatatcaaa cttaacacaa acccaaaaat cacactagac
    16561 ttcatactaa tccatctttt tacttgaaag agctattttt ccatagccat tctcttttaa
    16621 tttttgcatt acttgcataa tatcttcata ctttacactt ttatcgatat gaaaataaat
    16681 aatttcttct ttattgcctt tggtttttat atctaaagca cttgaaagat tttctaggct
    16741 taatttatca tcattaatag ccaaagtatt atcagtattt aaataaagta tgatgggatt
    16801 tttaagctta tcctctgctt gctgcgaact cttgggtaat tctattttga tagaacttgt
    16861 gataagagga gtaacagcca taaaaacaat caataataca agcataatat ctataaaagg
    16921 agttatattg atctcactta actcctcttc tttgtgagcc atttcagttt ttatcattaa
    16981 aataactcct atgaaaaagt atatagacaa aatttgcaag ctcatctaaa tggtgcataa
    17041 gttttaaatt ttttcttgta agataattat aaaaaagcac cgcagggata gcagctatca
    17101 agccaaaagc tgtagcaaac aaggcttcag ctataccagg cgcaacgact gccaaagaag
    17161 cattgccaag atttgctata cctataaaag cattcataat tccccaaact gttccaaaaa
    17221 gccctataaa aggtgcgcta gcacctatac tcgcaagcaa gctcaagcca tttttacttg
    17281 ctgtgatttg ctttgagatg gtattttgca aacgcaattc catgcgctct tttatatgat
    17341 catttttata ttcacttttt tcaagctcat cttgaatttc taaagataaa acacctgcaa
    17401 aatcctttgt ctgatctaat tcattgagat tttttaattc ttttatcttt tgtatagaca
    17461 agtctagatt tttcttcata aaataaaatt gcataagctt agaaataaaa actgtccatg
    17521 ctaaaatgga aaataaaacc aatatataaa taacaccttt taccacctca tcagcatttt
    17581 gataaagact agaaagagaa aactctattt taggtgcttc ggtttctatc ttgggagaat
    17641 caaaagataa atttgtatct gttgcattta cttctgcatt taaatttaac aataaaaaac
    17701 aaaataaaaa catttttttt aacatttgta tattccttaa tatttatatt caaaacttac
    17761 tataaaagta cgaccgcgag cagaattgct aaaaagatag ataggatcac ctgctccatt
    17821 atattgaagc tgattatcta aggaattata agcatttaag gcatccatgt agtttttatc
    17881 aaataaattt tgcacctctg ctctcattgt gaggttttta aaccattcta tattccaata
    17941 taaatctact ataataggaa tttttggtaa gtcttgtgtg gttggtttag gataataagg
    18001 attgtttgga tccttattcc aatcatctgt atttggattt accctttttg ctttgcctgt
    18061 gtattttgct ataccaccaa agcttatttt gtcatttagt ctaaagccaa gctctacatt
    18121 tgcataatct tttggaagct ccatgatttt acttgccgaa aaagagccaa gaagaggtcc
    18181 tgaagtttga gaaatagtcg aacttgtatc ttgtcttgaa tacatagctt tagcataagc
    18241 aaaacccaag tcatagctta attctaacta cacaccctta aatatagtat catcagctga
    18301 atttaagtgc atataaaatt gcgagcttgg aggaatttta cttggatctt caagataaaa
    18361 ttgttcatta taaatataat cttttatttt tgtatgataa tacacggctt taaaaccaaa
    18421 gcgatcatca tcttttaaaa gtccatgttt aaaagaatta aaacctattt gccaagtatt
    18481 ggcttgttct ggttttaaga aaggattgat accattgcct tcgttatttg agaaaaacat
    18541 ttcttgcaca ttaggggctc tatttgttct cgcaaaactt acaaagggtg taaaaagctc
    18601 gtgtatggca gctgaaagca tgacagaagc attcaggcga agtccatttt tatctatatc
    18661 tgtcgccgct tttggaaaac acataaaatt tacttcatcg caagcaggtc tgtgtccttt
    18721 gatattccaa tctaaaagat tcacattagt atcaagtgta aagataccat aatttagact
    18781 attatcaaga taataagtaa aaagattttg ttttccacga ggctgaaaag gtatagaatt
    18841 tactccttga attgatgtat ttaaggtatt tttataatca ttaagcaaaa tatttgctcc
    18901 aaagcgtgtg tttagattaa atccatgcca ttcaccctct aaagtatcac ttatatcaaa
    18961 agtagtggca gtattttttg cctttgtgtt agctatggca tcgtttgccg caaaagtaga
    19021 ttttgatcca taggtttgta tgccttgatt gtaggcaata agcgtattta cattaagcca
    19081 ctcattaggg ttgtgccaaa aatcaagttg ataattgtca ttgtgtattt ttctaccggc
    19141 aagttcgttt tgatatctac gataagaaaa tatagtgttt gtaaaagaat ttgggacata
    19201 ttcgagttta aaaagttgag agtttggttt ttgggttaaa aaatctggat caaaaggagc
    19261 gatattggta tcagctatac catctccatc agtatcaacc atactactac ctatcttgcc
    19321 acccccgcct acagtgtaat tttgagtaat tctctttgcg ctataaccaa aaagcgcgcc
    19381 cacatatcca ttattttcaa gttcagtctt tccagccact gcactcatat aacttggtcc
    19441 gattccattg cttccataag aaaatcgtcc taaaaatcca aagatattgc catcatgtac
    19501 aatatcattt atacctatgg tcttaaaatt tgctgatccc atcaaggcat ttgctccacc
    19561 tactccttca aaagttcccc ttgtaacatc aactccgatt aagaaatttg tatcaataac
    19621 agctccaaaa gctgaagttc ccgtttgtga atgaaatcta gctggatcat ctgatgcact
    19681 accataaaaa gtttgagtaa caccgtcaat catggtatta acacgcccaa aaccactcat
    19741 accacgaata tttacttgaa ctgtaccttg agcttgatct gtgtttgtgt aggttccagg
    19801 tatactacgc actatagaat ctatactttg tgtatctgaa cctataccct ctcttgtgct
    19861 tgttgctcca gaagttacaa aaggtttttc atcgtttttg atttttgaac ctgaaatttc
    19921 aagactatca aattctaatt cttcagaaaa agcaaaacta gcaaaacata aacctacagc
    19981 acaaaataaa cttaattttt tcattcctcc cccttataaa tcaaaacata atcactgtct
    20041 tttaaatcta tttctccata gcttaaattc actacaacta tttttttact gcttttaaaa
    20101 tcttgtatat gtaaaggaat tcctattttt ttacttgtat gatagcttcc agctagcaat
    20161 aaaactttat ttacatgatg aaccaataca tcagccatac gcctgtcttt gaattgttga
    20221 atttccacca atttatctag taattcttta ttttcttcag gatttagctt atggcttaag
    20281 gatataatgt caaaaagttg tttttttact tcatttgtgg ttgaaacata accctttaag
    20341 ggctgagccc cattataaat acttgtaatt tctgagcgtg aaagatttac acccaatatt
    20401 tttgactttg aataaaaaac cacattgaca aattgctcat aatctttcca tttccagacc
    20461 ttatcccaat ttaatgcatt agtaagttca ttggctttaa tggttttttt atttttaaaa
    20521 gctttatcta agtgattttg ctctgtgctt gctaacattt ctaaagctac atcaaagttt
    20581 atattttgag aacttaaatt tccttctaag gcattaaaaa tcataacttg acttatctta
    20641 tgtttaacct catcgtgttt ttcgccaagc agtatcacat ctgcttttag caattctaaa
    20701 atcatatctt caaaagaaat ctttttttga gtatgcgtat caagtatata aaaatcttta
    20761 ttttcttgaa gtggagatga tttttgcaaa acagcacaag cgctcaacat aaagcttata
    20821 aatagaatgc ttaaaatagt ataaaatttc attattattg ttactttctt agtggtttat
    20881 ttttgatatt gaatattaat attttatata taaaaatact cttaaatatt tatattaaaa
    20941 tttaattatt tataattatt a
//
LOCUS       DARGEY010000014        20055 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.014, whole genome shotgun sequence.
ACCESSION   DARGEY010000014 DARGEY010000000
VERSION     DARGEY010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20055)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20055)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20055
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.014"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..497
                     /locus_tag="SF008_000499"
     CDS             <1..497
                     /locus_tag="SF008_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232801.1"
                     /translation="NTILDKNLSNILALKFKDITKKTQDILASENSNQDLLLFLSDEK
                     IQDLFNDFDFFIKENSFYEGDCKDRFFKQLVALELRKKIILFRKNILKNFDLELFENS
                     FFELAIFLEYFYRFLEIKNLNKLYEKYCKDRDKNIFSKIINNKNKFCKLLKKSSKNLK
                     IYKG"
     gene            500..1207
                     /gene="ubiE"
                     /locus_tag="SF008_000500"
     CDS             500..1207
                     /gene="ubiE"
                     /locus_tag="SF008_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HEG8232802.1"
                     /translation="MQKQEKIIEMFNQIAPTYDKANRILSFGADVAWRKKACQRVMSL
                     YLKKDLKIADIACGTGDMIEIWQESALKMEKNILNIKGIDPSSGMLNVAKEKFPNVEF
                     IEAGAQNLPLESQSLDILSISYGIRNVVERQKALSEFARVLQKDGILVVLEFTKREKG
                     GFIAACRDFYLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKEEFILELKNAGFEILD
                     YKSFSFGVSSMFIAKKL"
     gene            1204..2367
                     /locus_tag="SF008_000501"
     CDS             1204..2367
                     /locus_tag="SF008_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEG8232803.1"
                     /translation="MTPTELNLKAKALLETHFDDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPAVGNFLELCGSVSLYPESGRYQFIATSMKKAGFGDLE
                     AQFLALKERLQKEGLFDPRFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NYKIQNYENLLLNLSKFFKFNSLPKIIDEKIKQSHNIEKQLNHLLANQMRYNELKLDK
                     LQNAYLQHENFFNKSKKFICIRKNGKIANLEDLKSDDIVILSSQTSQKEAKIL"
     gene            2377..3453
                     /gene="serC"
                     /locus_tag="SF008_000502"
     CDS             2377..3453
                     /gene="serC"
                     /locus_tag="SF008_000502"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HEG8232804.1"
                     /translation="MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYGLNDDYEVLFLQGGASLQFAMIPMNLALNGICEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFNHIPRVEFRDNADYAYICSNNTIYGTQYQNYPKT
                     KTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKAAMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQVKTLCEFMKEFQGKYA"
     gene            3450..3800
                     /locus_tag="SF008_000503"
     CDS             3450..3800
                     /locus_tag="SF008_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEG8232805.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDALFEKIGASKGDLIQIQILLANMQDFDAMNEIYDAWIKNYPKPVRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(3797..4771)
                     /locus_tag="SF008_000504"
     CDS             complement(3797..4771)
                     /locus_tag="SF008_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HEG8232806.1"
                     /translation="MLKASLKSIASYIPEKILSNADLEKMVDTTDEWITRRTGIKERR
                     IASENENTSDLGTKAALKAIERTNLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIIGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSSLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILTKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGNLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(4764..5750)
                     /gene="plsX"
                     /locus_tag="SF008_000505"
     CDS             complement(4764..5750)
                     /gene="plsX"
                     /locus_tag="SF008_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEG8232807.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALEAKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNENATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLRLGRLKGISRPAIATLMPNIINKTLLLDVGANTDCKAENLFQFAIMGEVY
                     ARAIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKPSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINELIENELGKYNA"
     gene            complement(5756..5902)
                     /gene="rpmF"
                     /locus_tag="SF008_000506"
     CDS             complement(5756..5902)
                     /gene="rpmF"
                     /locus_tag="SF008_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEG8232808.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            complement(5926..6279)
                     /locus_tag="SF008_000507"
     CDS             complement(5926..6279)
                     /locus_tag="SF008_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232809.1"
                     /translation="MKIPFSKINTKEYPFKLNLENMIFEGNLVKINSKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANELSNTIEFFDGHIDLIEVAISEL
                     EAYLSDYFYCINCNN"
     gene            complement(6280..6693)
                     /gene="ndk"
                     /locus_tag="SF008_000508"
     CDS             complement(6280..6693)
                     /gene="ndk"
                     /locus_tag="SF008_000508"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEG8232810.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIDFFFKPNEIC"
     gene            complement(6806..7090)
                     /locus_tag="SF008_000509"
     CDS             complement(6806..7090)
                     /locus_tag="SF008_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG8232811.1"
                     /translation="MAVKITDICIACGSCIDECPVSAIVDDVNNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVESGQPSRDNIGADMRSGDTPVFA"
     gene            7296..7892
                     /locus_tag="SF008_000510"
     CDS             7296..7892
                     /locus_tag="SF008_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEG8232812.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVQDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMLRMVDTML
                     FTNEHGEVCPAGWNKGDEGMKANPKGVAEYLGKNEAKL"
     gene            8011..9099
                     /gene="flhB"
                     /locus_tag="SF008_000511"
     CDS             8011..9099
                     /gene="flhB"
                     /locus_tag="SF008_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HEG8232813.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMMSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTSKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGN"
     gene            complement(9105..9848)
                     /gene="motB"
                     /locus_tag="SF008_000512"
     CDS             complement(9105..9848)
                     /gene="motB"
                     /locus_tag="SF008_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HEG8232814.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQALENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKAP"
     gene            complement(9851..10627)
                     /gene="motA"
                     /locus_tag="SF008_000513"
     CDS             complement(9851..10627)
                     /gene="motA"
                     /locus_tag="SF008_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HEG8232815.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVVHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLIEFAIIARRDGLLALESRTNE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGRKMKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPKISQFDKG"
     gene            complement(10643..13282)
                     /gene="polA"
                     /locus_tag="SF008_000514"
     CDS             complement(10643..13282)
                     /gene="polA"
                     /locus_tag="SF008_000514"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEG8232816.1"
                     /translation="MKTLTIIDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYSL
                     KNEHKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISV
                     SQEGYEADDIIASFVRTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAA
                     CLEKYGVKPHQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRNLLLEGKENAFLSKKLASLYENLEVQDLIEKATYPDEEPLLKILEILEHYELN
                     TLLKKLRQNPDNKDKNLGFKATLIQDENKLFEILNTLDKESIIAFDTETTGLDTKEAK
                     IVGFSFCMSENEAFYVPLTHNYLGVGEQISLQSAKKAIEVIFNHFVIGHNLKYDFKII
                     QNNFGLNLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDT
                     NALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNALLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKL
                     LNAFANDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAK
                     SYIEKYFENFTSIKKYFETVKNKAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESI
                     NSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIME
                     NIVKLKVKLKTSSSIAKNWGDLK"
     gene            13443..14804
                     /locus_tag="SF008_000515"
     CDS             13443..14804
                     /locus_tag="SF008_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HEG8232817.1"
                     /translation="MTNQQIDGIADKNFNTPEGRKVFKKAVFSCWLGTAMEYADFALY
                     GLAAATIFSEVFFPEQTPVIALLLSFVTYGIGFIARPIGALFFGYLGDKHGRKNVMMS
                     TVALMGISTTLIGFIPSYAVIGVWAPICLVILRFMQGFGAGAELSGGTVMLGEYAPSK
                     RRGLVSSVIALGSNSGTLLASFVWLLMVQMDEASFKEWGWRVPFMGSILIALFAVYIR
                     FHVKETPVFEKQKNEMMKLRLNNEKHMKKDERSFWQRSRAFWTMVGLRIGENGPSYLA
                     QGFIVGYVTKILLLDKSVATTAVMIASLVGFLVIPLAGYLSDRFGRRITYRMFCLLLM
                     IYAFPAFMLLDSKNEIIVILTIIVGMSLASLGIFGVQAAWGVELFGVKNRYTKMAFAK
                     ELGSILSGGTAPMVASALLAYYGTWWPIATYFVLTAGIGFVTTFFAPETRGRDLNKIE
                     DAI"
     gene            14801..15808
                     /locus_tag="SF008_000516"
     CDS             14801..15808
                     /locus_tag="SF008_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HEG8232818.1"
                     /translation="MRLILDTDIGNAIAGANTDDGLALALILSSKEIKLEMLSTVCGN
                     VPSLVAYSVAKDLFKRLNLNIPVYLGANEALKEPSKAWRQRLDESVKNFKLEYLWENI
                     KSPEILENINPDAIFKMGELVSKNPKEISICAIGPLTNIAMTMKIFKDFDINLKELFI
                     MGGSFDMPYYTKDTNFGFDPEAASIVLNSRAKITLIPYNATMQTLLTHEDLKELQGKN
                     ILCDFIVETLGVWIDYAYKTRGTKGTWIHDALTIAYALDSSIADFDECYADVICDSSL
                     ARGMSWRCFKEPKMSMGVDLSTKNCVKILKNVDNAKLLKLIKERFLKGVCYENYESIT
                     T"
     gene            complement(15764..16207)
                     /locus_tag="SF008_000517"
     CDS             complement(15764..16207)
                     /locus_tag="SF008_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8232819.1"
                     /translation="MFDFLYNDISYLGLFMVCFLSSTLLPLASEAFVLGFIKLDFNPN
                     LVLIVATLGNTLGSLSTYALAYFGKEKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSRYAFIIFIANSF"
     gene            complement(16212..19037)
                     /gene="uvrA"
                     /locus_tag="SF008_000518"
     CDS             complement(16212..19037)
                     /gene="uvrA"
                     /locus_tag="SF008_000518"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEG8232820.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHQCGQKISSMSVSDIVSEILKFPKDAKIIIYAPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKIPFMQLNEEQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCGGHRLKPESLAVKVAKKSLGEILDMSIEDSTAFFADEKNFSYLSEQQKL
                     ISKPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCEGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVE
                     KVAKEHKKTRSYTGYYLDLELKNTQKS"
     gene            complement(19110..19895)
                     /locus_tag="SF008_000519"
     CDS             complement(19110..19895)
                     /locus_tag="SF008_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEG8232821.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNFINF"
BASE COUNT         6584 a         3034 c         3247 g         7190 t
ORIGIN      
        1 tgaatactat tttagataaa aatttgagta atattttggc tttaaagttt aaagatataa
       61 cgaaaaaaac tcaagatatt ttagcaagtg aaaattcaaa tcaagattta ttgctatttt
      121 taagcgatga aaaaatccaa gatttgttta atgattttga ttttttcata aaggaaaatt
      181 ctttttatga aggcgattgc aaagataggt tttttaaaca acttgttgcg ttagaactta
      241 gaaaaaaaat tattttattt agaaaaaata tactaaaaaa ttttgattta gagctttttg
      301 aaaatagttt ttttgaattg gcaatatttt tagaatattt ttatcgtttt ttagagataa
      361 aaaatttaaa caaactttat gaaaaatatt gcaaagatag ggataaaaat attttttcga
      421 aaataatcaa taataaaaat aaattttgca aattgcttaa aaaatcaagt aaaaatttga
      481 aaatttacaa aggataaaaa tgcaaaaaca agaaaaaatt atagaaatgt ttaatcaaat
      541 tgcacctact tatgataagg cgaatagaat tttaagcttt ggagctgatg tagcgtggcg
      601 taaaaaagct tgtcaaagag tgatgagttt gtatttaaaa aaagatttaa aaatcgctga
      661 tattgcctgt ggcacagggg atatgataga gatttggcaa gagagtgctt taaaaatgga
      721 aaaaaatatt ctaaatatta aaggtattga tccaagtagt ggcatgctaa atgttgcaaa
      781 agaaaaattt ccaaatgtcg aatttataga agcaggggcg caaaatttac ctttagaaag
      841 tcaaagttta gatattttaa gcattagtta tggcattcgc aatgttgtag aaagacaaaa
      901 agccttaagt gaatttgcta gagtacttca aaaagatggt attttggtag ttttggaatt
      961 tacaaaaaga gaaaagggtg gatttatagc agcttgtaga gatttttatc ttaaaaatat
     1021 tttaccaagt ataggtggga taatcagtaa aaataaaagt gcttatgagt atttgccaaa
     1081 ctctattgaa ggatttttaa gtaaggaaga gttcatctta gaacttaaaa atgctggttt
     1141 tgaaatactt gattataaaa gttttagctt tggcgtgagt tcaatgttta tagcaaaaaa
     1201 actatgacac caacagaatt aaatcttaaa gcaaaggctt tattagaaac acattttgat
     1261 gatatagttt taagtggaga aatttcaaaa attactttgc atggttcagg acattggtat
     1321 tttgatttaa aagatgaaag atcaagcatt gcttgtgcta tgtttaaagg agctaattta
     1381 aaagtcggat ttaaaccagc tgtggggaat tttttagagc tttgtggaag tgtaagttta
     1441 tatcctgaaa gtggtcgtta tcaatttatc gctactagta tgaaaaaagc aggttttggg
     1501 gatttggaag cacagttttt ggctttaaaa gagcgtttgc aaaaagaagg actttttgat
     1561 ccacgcttta aaaaatcttt gccaaaattt cctaaaaaag taggcattat cacttcaaaa
     1621 acttctgctg ctttgcaaga tatgttaaaa cttattcacc aaaaagaata ttttttggca
     1681 aaaatttata tttttgatgc tttaactcaa ggaaataatg ctcctttttc tcttatacaa
     1741 gctttaaaaa aagccgatga tatggattta gatgttctta ttatagcacg tggtggagga
     1801 agcagagaag atcttttttg ttttaatgat gaaaatttag caagagagat ttttaaagca
     1861 aaaactccta ttatttcagc cataggacat gagattgatt atgttattag tgattttgtt
     1921 gcagatttta gagctccaac gccttcagct gctatagata ctttgtttta ttctaagttg
     1981 gatatagagc aaagtttgga tttaatggaa gaaaaattaa tgcaactttg gaattataaa
     2041 atacaaaatt atgaaaattt gcttttaaat ttaagcaaat ttttcaaatt taattctttg
     2101 ccaaaaataa tagatgaaaa aataaaacaa agccataata tagaaaagca attaaatcat
     2161 ctattggcaa atcaaatgcg ttataatgaa ttaaaattag ataaattgca aaatgcttat
     2221 ttgcaacatg agaatttttt taataaaagc aaaaagttta tttgtatcag aaaaaatggt
     2281 aaaatagcaa atttagaaga tcttaagagt gatgatatcg ttattttaag ttctcaaact
     2341 tctcaaaaag aagcaaaaat tttataagga tagattatga gaaaaatcaa tttcagtgca
     2401 gggccatcga ctttaccttt agaaatttta gagcaagctc aaaaagaact ctgtgattat
     2461 cagggtaggg gttattctat aatggaaatt tctcaccgca caaaagtatt tgaagaagtg
     2521 cattttggag cacaagagaa agctaaaaaa ctttacgggt taaatgatga ttatgaagta
     2581 ttatttttac aaggtggagc aagtttacaa tttgctatga ttcctatgaa tttggcttta
     2641 aatgggattt gtgaatatgc aaatacagga gtttggacaa aaaaagcaat taaagaagca
     2701 caaattttag gtgtcaatgt taaaaccgta gcaagtagcg aggaaagtaa ttttaatcat
     2761 attcctagag tggaatttag agataatgct gattatgctt atatttgttc taacaatact
     2821 atttacggca ctcaatatca aaattatcct aaaactaaaa ctcctttgat tgtggatgca
     2881 tcgagtgatt ttttttctag aaaagtagat ttttcaaata ttgctctttt ttatggcgga
     2941 gtgcaaaaaa atgctggaat ttcgggttta agttgtattt ttatccgtaa agatatgtta
     3001 gaaagatcta aaaataaaca aattcctagt atgttaaatt atttgactca tgctgagaat
     3061 cagtccttgt ttaatacgcc tccaaccttt gccatttata tgtttaatct tgaaatggat
     3121 tggcttttaa atcaaggcgg acttgataaa gtacatgaga aaaattctca aaaagctgct
     3181 atgctttatg agtgtattga tttaagtaat ggattttata aaggacatgc agataaaaag
     3241 gacagatctt taatgaatgt gagttttaat attgctaaaa ataaagattt agagcctctt
     3301 tttgtaaagg aagccgaaga agctggaatg ataggactta aaggacatag aattttagga
     3361 ggaattcgtg caagtattta taatgcgctt aatttggatc aggtaaaaac cttgtgtgaa
     3421 tttatgaaag aatttcaagg aaaatatgca tgataaagcg ttttgatgag tgcgatagaa
     3481 tgtcgcaaat tattgttttt gataaatatt ttaagactgc aggacaagtg gcttttgaac
     3541 ctagcggaga tattaaaaaa caaaccaaag aagcacttgc agaacttgat gctttgtttg
     3601 aaaaaatagg cgcaagcaaa ggagatttga ttcaaattca aatcttgtta gctaatatgc
     3661 aagattttga tgcaatgaat gaaatttatg atgcttggat taaaaattat cctaaacctg
     3721 ttagagcttg tgtaggaagt gctttagcag agggttattt ggtagaaatt caagcttttg
     3781 gaaagctaag agagaattaa aaattctctc ctccaaattt taaaagcgca gatccccaag
     3841 taaaaccacc gccaaaagca tctagtaaga tcagatttcc ttttttaagt cgtccttctt
     3901 cataggcatc attcattgcc ataggtatag aagcagctga agtattgcca tatttttgta
     3961 cagtgatcac acatttttca tcgcttagat tgagtttttc ttggacggct ttaatgatgc
     4021 gtagattagc ttgatgagga ataaaaagat caatttcttg tgctaaaatg ttatttttgg
     4081 ttaaaatttc tacaacatca ttactaagcg tgtttactgc tattttaaaa acttcattgc
     4141 ctttcatttg catagaaagt gtttgacata ggcttgattt ttgcgatctt tgagtcatta
     4201 aaagatctcc ataattacca ttgcttgcag tatgtacatc aaggatatga ttttcattat
     4261 ccaaacttac aactccagca cctgcaccgt ctccaaagag tatgcaaata cttctgtcat
     4321 tgtaatccat aattgaactt gttttttcag ctcctatgat taaaacattt tttttcaaac
     4381 cactttctac taaggcttta gcttgttcaa gcaaatagat aaaaccagaa caagctgctg
     4441 aaatatcaaa agcgctaata tttacaagtc ctaaatttga agcaatttta caagcggttg
     4501 aaggcatagt aaaataatca ggacttaaag tggctacaag aatagcatca atatcttcag
     4561 gttttaaatt tgttctttct atggctttta atgcagcttt tgtgcccaaa tcgctagtat
     4621 tttcattttc actagcaatg cgcctttctt taatacctgt gcgtctagtg atccattcat
     4681 cggtggtatc taccattttt tcaagatcag cattgcttaa aattttttct ggaatataag
     4741 aagctatact tttaagactg gctttaagca ttgtatttcc caagttcatt ttctataagt
     4801 tcattgatat gagattggct aaaatttata gcttgaaaaa ttgcattttt aatagctcta
     4861 gaatcgcttt ttccatgact tatgatcacg cagccattaa ctccaagaag gggtgctccg
     4921 ccatattctt gccaatctgt gtgttttttt aattttttaa aagatggctt catgagtaaa
     4981 gcacctattt tagaaataaa agattgcttt acttcgtttt ttagaagttg aaaaatagct
     5041 gttgccacac cttcacaagc ctttaagata acatttccat caaaaccatc acagactaaa
     5101 acatctattt caccattgaa aatatctcta ccttcagcat tacctataaa atttggaatt
     5161 tttttcataa gctgatgact ttctttggta agttcattac ctttgcattc ttcttcacca
     5221 ttagaaagta aagcaaggcg tggtttttga atttgcatga ttgctctagc ataaacttca
     5281 cccattatgg caaattgaaa taaattttca gctttacaat ctgtattagc tccaacatcc
     5341 aaaagtaaag ttttgttaat gatatttggc attaaagtgg caatagcagg tcttgaaatg
     5401 cctttaagtc ttccaagcct taaggtagcc aaagacatac ttgctccact atgacccgct
     5461 gaaactacag catctacttt tttttctttt aataaattaa tagctttata tatggttgtt
     5521 tctttatttt ttaaagcatc tgtggcattt tcattcatcg aaaaaatttc actagcttct
     5581 tcgtattgta tatattgttc taattttttt ggtattaaag gttttagaat tttagaattt
     5641 cccactaaga tagcgttaaa aggttttgct tctagcgcct ttaaaacgcc ttctataatg
     5701 ggtttttctc caaaatcacc acccattgca tcaatggcaa tgttaatcat tgattttaat
     5761 attccttagt tgttggattc gcacggtgag gcattttgta gcttccatct ttgtctttta
     5821 taggcatagg aagactaact ttatagtgag ttctgcgttt agctgcacga gttttgctca
     5881 ctcttctctt tggtactgcc attttttctc ctttataaaa tttaattaat tattgcaatt
     5941 tatgcaataa aaataatcac ttaaataagc ttcaagctcg ctgatagcaa cttctattaa
     6001 atcaatatgt ccatcgaaaa attctatagt attgctcaat tcgtttgctt catctttaaa
     6061 aataccatca cttgcaaaaa gttctaaatt ttctttaatt tcaagttcta actcagttcc
     6121 acaactatca caaggtctat agataaaacc ttgcataata gcatttattt taacaagctt
     6181 agaatttatt tttactaaat ttccctcaaa aatcatattt tcaagattaa gtttaaaagg
     6241 atattccttt gtattaatct tagaaaaagg gattttcatt tagcaaattt catttggttt
     6301 aaagaaaaaa tcaatttcta tttttgcatt ttccaagctg tcacttccat gaacagcatt
     6361 agcatcaata ctctcagcaa aatcggctct aattgttcct gctttagctt ctttaggatt
     6421 tgtcgctccc attaaatctc tattttttaa tacagcacct tctccttcta gtacagaaac
     6481 aacaacagga ccgctaatca taaattcaac caagtcttta aaaaaaggtc tttctttatg
     6541 aacagcataa aaattttcag cttgttcttt actaagttga acttttttca ttgcagcgat
     6601 tcttaatcca ttgctttcaa aacgatctaa aatttttcct ataacacctt ttttaacagc
     6661 atcaggttta attatagata aagttttttc catctttgta ataactcctt attttaataa
     6721 agcttaaaat tatacttgaa tttgtttaaa gaaagttaaa ttaaaagaaa aagctaggaa
     6781 tctctagctt tttaattttt taaaattatg caaaaactgg agtgtcccca cttctcatat
     6841 cagcgccaat attatcacga cttggttgtc ctgattctac agcactccaa actatacatc
     6901 catctgttgg gcaagcacta gcacaagctg gttgatcatt atgtcctacg cattcaacgc
     6961 atttgtttgc ataaacataa tatctatctt cgccttctgg attgttaaca tcatcaacga
     7021 tagcactcac tggacactca tcaatacaag aaccacaagc aatgcatata tctgtaattt
     7081 ttacagccat tttttctcct ttttaatatt aagatttaaa agattttagc ataaaattct
     7141 taaataatgt aaattttgat aatcaaaaat ttacattatt tgataataat tataactttc
     7201 ttaaattttt aatattattt tagatattta aaaaaaaata aagatttaaa cgatataatt
     7261 tcgttatcaa taaaatttat tatttaggag aaaatatgat agttactaaa aaagctttag
     7321 attttactgc tccagcagta ttgggaaaca atgaaattgt tcaagatttt aatctttata
     7381 aaaacatagg tccaaaagga gcggtagtat tcttttatcc aaaagatttt acttttgttt
     7441 gtccttcaga aattatagct tttgacaaaa gatatcaaga atttaaaaac cgtggcattg
     7501 aagtaattgg aatttcagga gataatgaat tttcacattt tgcttggaaa aatactccag
     7561 taaatcaagg tggtattggt caggttaaat ttccgcttgt tgctgactta actaagcaga
     7621 ttgctagaaa ttttgatgta ctttatgcag aagcagttgc ccttcgtggt tcgttcttgc
     7681 ttgatgctga tggaacagtt cgccatgctg tggttaatga tttaccacta ggtagaaata
     7741 tagatgaaat gttaagaatg gttgatacta tgctttttac aaatgagcat ggtgaagttt
     7801 gtcctgcagg atggaataag ggtgatgaag gtatgaaagc taaccctaaa ggcgtggctg
     7861 aatatcttgg caaaaacgaa gctaaacttt aatttcttag tataaagcct ctttacgagg
     7921 ctttttcttc atttttattc tttaattgaa attcataaat tttctactat aattttacac
     7981 acatattaaa atttttattt aggctaaaat atggcaggcg aagatcaaga aaaaacagaa
     8041 gaacccacgt ccaaaaagat agaagatgcg cgtaaagaag gtaatgttcc aaagtctcaa
     8101 gatgcggcag ctattgtaac tttgataatt ggagtaacta taactttatt tatgatgagt
     8161 tttatgggcg agagaattgt aaatttatat agatactatc aaagttttat tggtgttgaa
     8221 tttgatttgc gtattattca agccattatg attaaaagca tttttgaggt tttaattatt
     8281 cttgcaccta ttgttttaag tattatgatt gctggggttt tgggaaatat tatgcaattt
     8341 ggttttattt ttacaactaa acctattatg ccaaatttag gaaaaatcaa tcctctaaaa
     8401 ggtttaaaaa accttttttc attgaaaaaa attgttgaaa gtataaaaat tattttaaaa
     8461 gtgggtattg tttttactat agcttttata gttttactta aatttatgca agagcttcca
     8521 agagttgagc tttatactat ggttgcacag cttacttggc taagagacag agctattgtt
     8581 ttagcagcta ttgttatagt tgctttttta attattgctg ttttagatgt ttttttggtg
     8641 cgttttcagt attttaaagg tttgcgtatg agcaaacaag aaataaaaga tgagtataaa
     8701 caaatggaag gagatcctca ggttaaaggt agaattcgta gacttcaaat ggaagctgcg
     8761 cgtcgtcgta tggttcaaga tgttgcaggt gcggatgtgg tgatcacaaa cccaacgcat
     8821 tatgccgtag ctattcgtta tgatacaagt aaagaacaag cccctagggt tgttgctaaa
     8881 ggagtggatt ttctcgctct tcgcataaaa caagtagcct atgaaaataa tgttgtagtt
     8941 tatgaaaatc ctcctttagc aagagagctt tataaagctt gtgatgttaa tgatcttatt
     9001 cctagggaaa tgtttaaagc tgtagctgag gtgctaggat ttgtttataa tacaaataat
     9061 aagagtcgtt tagctggtca agtaaaaaaa ggaaactaaa acttttaagg tgctttagtt
     9121 cctattttgt taataagctc aagaaccgat ttttgagtac ttgtatctgc tgtatcaact
     9181 ttaaaatata tttctactct attattttct agagcttgtg gatttccatt gataggatta
     9241 ttaagcccgt agcttttaat gctaatgttt tttaaatttg ctccaccttc tataaaatat
     9301 tttaatacat tttccgctct ttggtaggcg agttcataac ttcttataat agagtcgcta
     9361 ttgtctgtat agcctctaat ttctattttt gcttgaggtg gcaaatatgt tgttagttca
     9421 gccatacgtt ttaaataatc ttgtatatca gctgaaacga tttgagcgct acctctttca
     9481 aattcaactt tagatggaag gttaagagca acctgattgt cgctttgatc tagagccgct
     9541 tgaagacgtt tgatagtttc ttgctgcgtc atagtcattt gttttaatga tttgagttca
     9601 tcactttctt cttttgctgc gcctttatat ttttcttgag ttttactctc ttctttgact
     9661 gtttgagtag aggtgtaatc aaagatttta acaaattcag tttttaaagc ctctacttta
     9721 gcaggatttg ttttagaaat tgcccaaaga gcaataaaaa gtgccaaaag caaacttaga
     9781 aagtctgcat aaggtacagc ccatttttca cctgcaggac attctggaca tttatgtttc
     9841 ttggccattt ttaaccttta tcaaattgtg aaatttttgg atcatcgtga cttaagaaat
     9901 taaaaagctt agcttccaaa tctctagggt tcgcaccttc tgcaattcct tttatggctt
     9961 cagtgatgac aatttgctct tttacaagat ccattccgtt agctttcatt tttcttcccc
    10021 aaggggcaaa aagcgcataa gcaccaaaaa tcccagtaac cgtagctgta aaagcacctg
    10081 aaatacccgc tgccattgcc tgaggattat ctagtaattt aagagctaga ataagaccaa
    10141 aaaccgcacc aacaagtccc atagtagggc aagtttctcc aaatactatc caatattctg
    10201 cgcattcttt ataatgctct tcaagttgtt cggtttgtat ttccatgctt tcgtgaattt
    10261 cttcaaagct tttaccatct acaagcatca tcatagcatt ttttaaaaat tcattttcaa
    10321 tctcattggt tcttgattct aatgctaaaa gaccatctct tcttgcaata atagcaaatt
    10381 ctattaactg ggctatcctt tcaggtagat ttactccaga acctttaaag acaactttga
    10441 gttctttata agctgctttt acaatttttt tatgtgtaga agtcattgca caaaatgcag
    10501 ccgttggcat aactataaga aaggaagaaa gatgcacaac atgtaaagga ttaccacctt
    10561 ctagtatatc tcctactgaa atactagtaa ctgcaagcac cattcccagt atggttgaaa
    10621 gatccattaa atatctcctt gattatttta aatcgcccca atttttggcg atacttgagc
    10681 ttgtttttaa ttttactttt aattttacta tattttccat aatatctcta gtttttttca
    10741 caaaattttc acataaatca tcttttactt caaaaattaa ttcatcgtga atttgcaaaa
    10801 taagcttttt atcttcattt aattccttgt tgatttctaa cattgcaagt ttgattacat
    10861 cagctgctga gccttgtaag attgaattaa tgctttctct ttcatacatg gcaatttgca
    10921 taggttttgc gttttcaaaa tcaaaataac gcttgcgacc gcttaaagta gtgataaaac
    10981 cattttgttt agctttgttt ttaactgttt caaaatattt cttaatacta gtaaaatttt
    11041 caaaatattt ttctatgtaa gatttggcta aatgagcttc tatttttaaa ttttgactta
    11101 aagttttata gcccatgcca taaataagtc caaaatttat actttttgca acacttctgg
    11161 tttcataatt gctttctcca aaaatcatta tagctgttct tgcatgtata tcttcatcgt
    11221 tagcaaaagc atttaaaagt ttttcatctt cgctaaaatg cgcaagcatt ctcagttcga
    11281 tttgagaata atcaagagag ataaaactaa atccatcttt agctacaaag caagatttat
    11341 aatcttttgc gtattgtccg tgtgcaggaa tattttgcaa atttggatct ttagatgaaa
    11401 ggcgtcctgt agcggttcca gtctgtaaaa aacttgaata aatgcgtgaa tttttatctt
    11461 ttaacgctag ttttaacaaa ggttcgcaat aagtggaata aagtttggca agttctctat
    11521 aatctaaaat tttggcaatt acaggatgtt tatctaaaag tgcatttaaa actttttcat
    11581 cggtagaata tcctgttttt cctttttttc cacttggaag tttaagtttt tcaaaaagta
    11641 tatcacctac ttgtttaggt gagtttaggt taaatctatc ctcacaaaga gtataaattt
    11701 cttcacttaa atttttgatt tcattttcaa attttttcat aaggatttca agtgcatttg
    11761 tatcaagctt tatgccattt tcttccatca tcataatgat tttaatgaaa tcaaattcgc
    11821 agtttttagc aagttctagc aaaggagttt caagattttt taaaaaataa agataaaatc
    11881 ttaaagtgat ataagcatct tccgcagcat atttgcaagc tttttcaagc tctacacttg
    11941 caaaattttc tcctttttta acaaggcttt caaaatgtaa ggtttcataa ttaaaaagtc
    12001 ttaaagctaa atcatccata tttactctta aagaaggatt tttaagccat gctaaaatca
    12061 ttgtatctgc gtatttttga ggtaaattta atccaaaatt gttttgaatg attttaaaat
    12121 catatttgag attgtgtcct ataacaaaat gattaaagat tacttctata gcttttttgg
    12181 cgctttgcaa tgagatttgc tcacctactc caagatagtt atgagttaaa ggcacgtaaa
    12241 aagcttcatt ttcactcatg caaaaactaa aaccaacaat ttttgcttct tttgtatcaa
    12301 gtcctgtggt ttcggtatca aaagcaataa tactttcttt atcaagggta tttaaaattt
    12361 caaaaagttt gttttcatct tgtattaaag tggctttaaa acctaaattt ttatctttat
    12421 tatcaggatt ttgacgcagt tttttaagca aagtattaag ttcgtaatgt tctaaaattt
    12481 caagtatttt taaaagaggt tcttcatcag gataagttgc tttttctata agatcttgca
    12541 cttctaaatt ttcatacaaa gaggctaatt ttttgcttaa aaatgcattt tccttaccct
    12601 ctaaaagcaa attacgactt ctttcgttgc gtactagggt taaattttca taaattcctt
    12661 ctatactacc aaattcatca agtaaggttt tagccccttt tgcacctata cctttaacgc
    12721 ctggaatatt atcagaacta tctccgcaaa gagctaaaaa atctctgatt tgatgaggtt
    12781 ttactccgta tttttctaaa cacgctgctt catcatagtc gtttttagaa ataggactgt
    12841 aaatgcttgt tttaccatct tttatgagtt gataaagatc tttatcttga gtgataatgc
    12901 gtacaaaaat atccctatct tcacaagttc ttacaaaaga agcgatgata tcatcggctt
    12961 cataaccttc ttgagaaacg cttataaaac ccattttttc tatcatctct atgcaaattg
    13021 gaatttgttc tagaagttca ggtggtggtg gagtgcgatt ttgtttatag tttggatcaa
    13081 tttcgctacg aaaagttttt cctttggagt ctaatgcaaa aacaatataa tcacttttat
    13141 gttcattttt taagctataa ataaaatttg caaaaccgct aatcattcca ctagcttgtc
    13201 cttgtgaatt tttaaaacct tttaatgcgt agtaaagtct gaaaaaaaat ccaaaagtat
    13261 cgataatagt taaagttttc ataataattt cttctttaat aaaatatatt tttaagctgt
    13321 attatttcaa aattttgctt aaaatgtcta caatttaaga tctttaagca aaaacactgc
    13381 aatttttagc cataattaca aattatttat aaaaaaatat attaaaatat aaggataatg
    13441 taatgacaaa tcagcaaatt gatggaattg cggataagaa ttttaataca cctgaaggta
    13501 ggaaagtttt taaaaaggca gttttttctt gctggttggg aactgctatg gaatatgcag
    13561 attttgcact ttatggttta gcagctgcaa caattttttc agaagtattt tttcctgagc
    13621 aaactccagt aatcgcactt ttgcttagtt ttgtaactta tggcataggt tttattgcaa
    13681 gacctattgg ggctttgttt tttggttatt taggtgataa acatggaaga aaaaatgtta
    13741 tgatgagtac tgttgcttta atgggaattt caactactct cataggtttt attccaagtt
    13801 atgcagtaat tggtgtttgg gcgcctattt gtttggttat attacgtttt atgcaaggtt
    13861 ttggtgcagg agctgaactt tcaggtggaa cagttatgct aggagaatat gctcctagca
    13921 agagaagagg gcttgtttct tctgtgattg ctttaggatc aaatagtgga actttacttg
    13981 cgtcttttgt gtggcttttg atggtgcaaa tggatgaggc aagttttaaa gaatggggtt
    14041 ggagagttcc ttttatggga agtattttaa tcgctctttt tgctgtatat attcgttttc
    14101 atgtcaaaga aacccctgtt tttgaaaagc aaaaaaatga aatgatgaaa ttgcgtctta
    14161 ataacgaaaa gcatatgaaa aaagatgaaa gaagtttttg gcaaagaagt cgtgcttttt
    14221 ggactatggt gggcttaaga ataggtgaaa atggaccttc ttatcttgcg caaggtttta
    14281 ttgtaggtta tgtgactaaa attttacttt tagacaaatc agtagctact acagcagtga
    14341 tgatagcttc attggtgggt tttttggtta ttcctttggc aggttattta agtgatagat
    14401 ttggaagacg tattacttat agaatgtttt gtttactttt gatgatttat gcttttcctg
    14461 cttttatgct tttagatagt aaaaatgaaa ttattgtgat tttaactatt attgtaggta
    14521 tgtctttagc atctttaggg atttttggtg tacaagcggc ttggggtgta gaactttttg
    14581 gggtaaaaaa ccgttataca aaaatggctt ttgctaagga gctaggttct attctttcag
    14641 gaggaacagc gcctatggtg gcttctgctt tgcttgcgta ttatggcact tggtggccta
    14701 ttgcgacata ttttgtatta actgcaggta taggttttgt gactacattt tttgcgccag
    14761 aaactagagg tagagattta aataaaatag aagatgcgat atgagactta tcttagacac
    14821 agatataggc aatgctattg caggagcaaa taccgatgat ggtttagcgc ttgctttgat
    14881 tttgtcatct aaagaaatca aacttgaaat gctaagcaca gtttgcggta atgttccaag
    14941 ccttgttgcc tatagtgtgg ctaaggattt atttaaacgt ttaaatttaa atatcccagt
    15001 ttatttggga gcgaatgaag ccctaaaaga accaagtaaa gcttggcgtc aaagacttga
    15061 tgaaagtgtt aaaaatttta aacttgaata tctttgggaa aatataaaaa gtcctgaaat
    15121 tttagaaaat ataaatcctg atgcgatttt taaaatgggt gagttggtga gtaaaaatcc
    15181 taaagaaatt tctatttgtg cgataggacc tttgacaaat atcgctatga ctatgaaaat
    15241 ttttaaagat tttgatataa atcttaaaga gctttttatt atgggcggca gttttgatat
    15301 gccttattac actaaagata caaattttgg ttttgatcct gaggcggcta gtatagtgct
    15361 aaattcaaga gctaaaatta cactcatacc ttataatgca accatgcaga ctttattaac
    15421 acacgaggat ttaaaagagt tgcaaggtaa gaatatttta tgtgatttta ttgttgaaac
    15481 tttaggtgtt tggattgatt atgcctataa aacacgtggt acaaagggaa cttggataca
    15541 tgatgcttta acgatagctt acgcattaga ttctagtatt gcagattttg atgagtgtta
    15601 tgctgatgtt atttgcgata gttctttggc aagaggtatg agttggcgtt gttttaaaga
    15661 accaaaaatg agtatggggg tggatttaag cactaaaaat tgtgttaaaa ttctaaaaaa
    15721 tgtagacaat gcaaagcttt taaaacttat aaaagagagg tttttaaaag gagtttgcta
    15781 tgaaaattat gaaagcataa cgacttaatt ttccaagtaa gataaaaaat atagttttta
    15841 aaaaagaata tttcgcaaaa ccaagtccca aggcaaaaag atctcctact aaaggtaaaa
    15901 aagtaaaaaa agcaaatata cttccaaatt tagcaaaatt agcattgaaa ttttctaatt
    15961 tttttaagga tttgctaaag tatttttcta aaattttttc ttttccaaaa tacgctaaag
    16021 cataagtact taaacttcct aaggtattac ccaaagtggc tacgataagt accaaattcg
    16081 gattaaaatc aagttttata aagcctaaaa caaaggcttc acttgctaag ggtaatagtg
    16141 tgcttgaaag aaaacacacc atgaaaagcc ccaaatagct aatatcatta tataaaaaat
    16201 caaacataaa attatgattt ttgtgtattt ttaagctcta agtctagata atatcctgtg
    16261 taagaacggg tttttttgtg ttctttagcg actttttcca cgcttcctgt gcttataact
    16321 tttccacctt taactccgcc ttcaggcccc atatcgatga tataatcagc atttttaatc
    16381 acatctaaat tatgttctat cacaaaaaca gaatttttaa gatcaactaa atgttgtaaa
    16441 actaagatga gtttattgac atcttcaaaa tgcagtcctg ttgtaggttc atcaagtata
    16501 taaagcgttt ttcctgtatc gctacggctt agttctttag caagtttgat tctttgtgct
    16561 tcacctccac ttaaggtggt ggcattttgt cctagagtta gataatctaa acccactttt
    16621 actagagtat ctaatttttg tttgatttta ggaacggctg taaaaaattc actcgcttct
    16681 aaaacactca tatttaaaat ttcactgata tttttgcctt tatatttgat ttctagcgtg
    16741 gcatcattgt agcgtttgcc ctcgcaagta tcacaaacta ccataacatc aggtaaaaaa
    16801 tgcatttcta ttttgatttc tccatctccg ctacatttct cacatcttcc acccttgaca
    16861 ttaaaagaaa agcgtccagc tttataacca cgcattttgg cttctttagt ggcggcaaaa
    16921 agatttctga tttcatccat agcacctgta taggtggcag gatttgaacg tggtgtgcgc
    16981 ccaattgggc tttgatcaag ataaatgact ttatcaagtt tttcaagtcc ttctatttgt
    17041 actccgccaa gttttttaac ttttttcgca cggtttaatt cctcttgtgc aaaaggaagt
    17101 agggtttgaa gtatcaaaga gctttttcca gaacctgaaa ctcctgttat agcgactaaa
    17161 ttttgcaaag gaaattttac gcttaaatct tggatattgt taatatttac atttttaagc
    17221 tcaagccatt ctttctgtgt tctgttttga agttgtgaaa tttgtttttt accattcata
    17281 taaagtgcag tttcgctttt gctttttaaa agttctttat aagttccact aaatacaacc
    17341 tcacccccaa attttcctgc ttttggacca atatctacaa taaaatctgc ttcttctatg
    17401 gtcattttat catgctctac gacaattagg gtattgccct tttgttgtaa atttcttaaa
    17461 gttttaatca gttttgcagt atctctttca tgaagtccta tgctaggctc atctaagaca
    17521 tacatcactc cgcttaaacc actgccaatt tgtgaagcta tgcggattct ttgtgcttca
    17581 cccccactaa tcgttcttgc atcgcgccct aaagaaagat aacctagccc cacatcatac
    17641 aagaaaaaca atctttcgtt gatttctttt aggataggtt tagaaataag tttttgttgc
    17701 tcgcttaaat aagaaaaatt tttctcatct gcaaaaaagg ccgtactatc ttctatgctc
    17761 atatctaaaa tttcacccaa gctttttttg gctactttca cggctaaact ttcgggtttt
    17821 aaacgatgcc caccgcagtc tttacaaatt ttttcactca tatattcggc taaatctttt
    17881 tcatctttta gcatttcata agccatttta accacgcctt caaaagtgcg ttttaggcga
    17941 tttcttttcc aaagaaattc tatagttttg gcattaccat acaatacaag acgtttttgt
    18001 tcttcgttta attgcataaa aggtattttg ataggaattt cattttgttc gcaaaaggcg
    18061 attaggaatt tataataata acttttatta aaaccataca tgattttaac agcaccgttt
    18121 tcgagactta aattttcatc gatgattttt ttcatatcta aagtataacg aattccaagt
    18181 ccatcgcaag cttcacatgc tccttttgga gaattaaaag aaaagcttaa aggttcaagt
    18241 ggaacaaagg aaattttaca atcaaaacaa gctgaatgct cgctaaaatg atagtgttta
    18301 ttaaggttta tttcctcatg atttaaaact tctatttcta tttctccaaa gctttcctgt
    18361 aaaccttttt ctatatcgct tgcaagacga gaaagtaaat cttcttgaat ttcaagtcta
    18421 tctatgacaa gtttaatggt gtgttttttg gttttggcta gttcaatttc ttcatcaagt
    18481 cttaccaaaa ctccatcaat ttgagctctt acatagcctt tgttgcgtaa attttcaagc
    18541 aaatctgcat aagttccttt tttttctcgt atgagtgggg cgtagatgat gatttttgca
    18601 tcttttggaa attttaaaat ttcactgact atatcactta cactcataga tgaaattttt
    18661 tgtccacatt gatgacaatg ttgaatgcca actcttgcgt ataaaagtct tagataatca
    18721 taaatttcag tgatggttcc tacagtagag cgtggatttt tagaagtagt tttttgatct
    18781 atggcaatgg ctggagttaa accttcgatt ttatcgacat caggtttgcc taccttatct
    18841 aaaaattgtc tggcgtaagc acttaaactt tctatataac ggcgttgtcc ttcagcataa
    18901 agagttccaa aagcaagggt tgattttcca cttccgctca gtcctgtaaa aacaatgagt
    18961 ttgtttttgg gaatttcaag gtggatattt tttaggttat tttctcttgc gccaatgatt
    19021 tttatggtat cgttcatagt ctttcctaaa cattaaataa atttaagatt ttagcataat
    19081 aatattaaaa gaacttggat aaatccaagt taaaaattta taaaatttag cttattaagc
    19141 aaagagtggg tggttccaag tattgacaag gcatatacgc aaagtaaaat ttttctatga
    19201 gctgaaatat gcattttttc tatgatttta attcctataa aaactccaac catagaagct
    19261 atacctacta gtattccttt atgaataact tcagagtcta taactccaga atttgaaaaa
    19321 gatataatac cagagactga agcaaaaata acaaaaaaca aggataagga aacaactttt
    19381 ttactatcat agcctaaaaa ataagctaaa atcggagcaa ttaaaagtcc gccaccaatt
    19441 cccaaagaaa tagcaaaaat accagtaaaa gctccagcaa taaataaaat gacattcttt
    19501 acccaaacgc ttctttgatt ttgcacaatg ttttctttaa ttccaaaagc atatttgata
    19561 aaaaatatac aacttaccgc caaaaatacg ctagtaagag ctacatcact taaagctttt
    19621 aaaagcattc cgctaaagct tgcccctatg agccctccaa aacctatcat aataccatct
    19681 ttaagattta gatttttttt cttataatta atataagagc caaaaactgc tgcaaaaatc
    19741 atttgcaata ctgaaattcc gatagcatgg tgagcacttg ctccaagtgc gaacatagaa
    19801 ggaacgataa tcatacctcc accaatgcca aaaagtccag aagcaatacc tgaaatgatt
    19861 cctatgatta gataaggtaa atctgtgatt tccatagctt ttcctaaaaa atattaaata
    19921 tttcaaatac ggaataattt tatcttatta agctaagtat tatcttagtt ttttataaca
    19981 atagaatatt ttttggtaac tttaagcatc gtaaaaatgt ttcaaaatat tataaaatat
    20041 aaagatttta taata
//
LOCUS       DARGEY010000015        19414 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.015, whole genome shotgun sequence.
ACCESSION   DARGEY010000015 DARGEY010000000
VERSION     DARGEY010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19414
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.015"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            122..877
                     /locus_tag="SF008_000520"
     CDS             122..877
                     /locus_tag="SF008_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8232822.1"
                     /translation="MKKILSIALVALVGLFLGACSDSKNKESNASVELKVGTAPNYKP
                     FNYKENSKLTGFDTDLVEEIAKKNGIKIVWVETNFDGLIPALKAGKIDMIASAMSATD
                     ERRQSVDFTKPYYMSKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQ
                     VQSNKDLNIAVLALKNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFSFAFDK
                     NKQKDIIEIFNKGIDEAKTDGFYDTLIKKYELE"
     gene            complement(901..1539)
                     /locus_tag="SF008_000521"
     CDS             complement(901..1539)
                     /locus_tag="SF008_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEG8232823.1"
                     /translation="MKLVLFDLDDTLIQGDSAKLWLKFCVEKGFLPQEYLEKIVFYQK
                     QYQEKKLDMDEFMTFFLQSVKGKNEDRISSLVDEFIKIYIKPYEKAKELIIKYQDQRC
                     IIISATAEFLVRKIASFLGVRESIAIKCERVGDKFSGKAYGIYSFKEGKVLRLKEYLG
                     KDYEKWMKDSYFFSDSINDLPLLESVSKAFVCNGDEKILKIAKERKYEILTF"
     gene            complement(1536..2525)
                     /locus_tag="SF008_000522"
     CDS             complement(1536..2525)
                     /locus_tag="SF008_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8232824.1"
                     /translation="MAYLKIKNFKKAYGDKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVTKPDLLLLDEP
                     LSALDAKIRKHLRVQIKEIQKELELTTIFVTHDQEEALELSDRIILMNEGKIIQNSNA
                     NNLYFLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEAGDKIALKFNLSLAKELK"
     gene            complement(2529..3308)
                     /locus_tag="SF008_000523"
     CDS             complement(2529..3308)
                     /locus_tag="SF008_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8232825.1"
                     /translation="MNENLSLKAKIYHYAVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVSPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNMGGTAWILIFTYFTIALPFIYRALDNAMSNV
                     NLNELIASNAMLGGSLMGAIFKLVLPNLRNGILVAVFLSFSFLIGEFLYANILVGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            complement(3309..4148)
                     /locus_tag="SF008_000524"
     CDS             complement(3309..4148)
                     /locus_tag="SF008_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEG8232826.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFILAPSKICNFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSLENSHLNACKMLGGGNFLYWLKIALPLLAPALFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLAITFIANFLSKKYNF
                     KVL"
     gene            complement(4145..4955)
                     /locus_tag="SF008_000525"
                     /pseudo
     CDS             complement(4145..4955)
                     /locus_tag="SF008_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
     gene            complement(4952..6277)
                     /locus_tag="SF008_000526"
     CDS             complement(4952..6277)
                     /locus_tag="SF008_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HEG8232827.1"
                     /translation="MKKVILTSAMLCSVLFGVQEYEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANITREEKIGTFKSKGNRETDFYLPFKNQPIQGHSGIKYIPKKDVFWVI
                     SDNGLGKKYNSYDSMLYAHEFKFDFKNSKYELLKTVFFKDSDKKYPYPITTETTKERY
                     LSGADFDTESIQVINDEFYIGDEFGPYLLHFDKNGNLKEVFDVYVEGKKLISPDNPSL
                     KFSDKPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGKEYLRI
                     IEFDVKNKKFTGKTYKYFLEDKSHSIGDFNMIDDKYGIIIERDQKEGTKDKACKEGED
                     TKHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFE
                     TIEGVDIVDDSHIVVENDNNFPYSSSREPNKTDDNEFILLEVKDFLKSK"
     gene            complement(6288..7334)
                     /locus_tag="SF008_000527"
     CDS             complement(6288..7334)
                     /locus_tag="SF008_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEG8232828.1"
                     /translation="MSKKFFLSLGLVALLFSNSQAIDENLIKAAQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYGIEHSDTDMSSAQEIAKFKAEKKNASGDIGDIGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITVGDVSVAAQAVSAVLAANYALGGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            7451..8434
                     /gene="corA"
                     /locus_tag="SF008_000528"
     CDS             7451..8434
                     /gene="corA"
                     /locus_tag="SF008_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HEG8232829.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSAAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKSDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKIIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            8455..8997
                     /gene="mog"
                     /locus_tag="SF008_000529"
     CDS             8455..8997
                     /gene="mog"
                     /locus_tag="SF008_000529"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HEG8232830.1"
                     /translation="MDTINIGILTLSDRASSGIYEDKATAEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAMCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIKECLEPVFPAIPYCIDLIEGA
                     YIEANDEVIKVFRPKKKCQN"
     gene            complement(8994..9179)
                     /locus_tag="SF008_000530"
     CDS             complement(8994..9179)
                     /locus_tag="SF008_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HEG8232831.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLIRANKF"
     gene            9307..10494
                     /locus_tag="SF008_000531"
     CDS             9307..10494
                     /locus_tag="SF008_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEG8232832.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYNLIINIAWIGFGFLYLKELLILNNTRFENTLFLLSFLIITS
                     ILNLPLSIYESFIKDKAHGFSNMTVKLFIKDTMKSLILTLIFGFLILYALLFCYDFFG
                     TFWWIAAFIFAFCIIVIINLIYPTLIAPIFNKMKKLDDENLLKKISSLMKQCGFSANG
                     VYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFVHKDII
                     KALFNGVIIMFLLFFVFANLPEFVYLESHLEGVNGGVFALLFILANIFSFLISPILNA
                     LSRKNEFAADQHGAKVTSKEDMKNALIALARENKAFIKTSKIYAFFYLSHPSISDRIK
                     ALS"
     gene            10491..11306
                     /locus_tag="SF008_000532"
     CDS             10491..11306
                     /locus_tag="SF008_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEG8232833.1"
                     /translation="MTIKNALMEAKSSLKGYENEAVFILCEYLKKDKAWLFLNQDIKI
                     DHEPYFELIKRFKSGEPFEYIFEKVDFWGLEFNIKKGVLIPRYDSEILLFQILNLCKK
                     NTFNGILEIGFGSGILSIVLAKELELKITACDINPKALELALENAKLHKVDHLIDFKL
                     CHFKQIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDK
                     KVKFLACEFGYDQKEILEKILYQNNFIVDFFKDEQGYNRAFIAKFTNMRYDKK"
     gene            11319..11789
                     /locus_tag="SF008_000533"
     CDS             11319..11789
                     /locus_tag="SF008_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HEG8232834.1"
                     /translation="MKAVNLFLLASIIGVELILGIVVAPTIFFPQNLIGEGVLSHFQS
                     GLMMTQIFIKMGYLLIFVSVVNFLYEIYSLIKDEMKFKIKFSKFMLSLLILILSLIFV
                     FYFTNTIIELQNLGENTTKTQEFISIHNASEVVIKIILIMQVFLYFLSFKIAKK"
     gene            11828..12577
                     /gene="flaC"
                     /locus_tag="SF008_000534"
     CDS             11828..12577
                     /gene="flaC"
                     /locus_tag="SF008_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HEG8232835.1"
                     /translation="MMISDATIMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATDGLSID
                     NQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNANYLKENAAAFVAAQSNMQLQSKIANLLQ"
     gene            12612..13244
                     /locus_tag="SF008_000535"
     CDS             12612..13244
                     /locus_tag="SF008_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEG8232836.1"
                     /translation="MTLEQILEKTKNVRLVAASKYVDASIIEKLFDQGIVEFGENQVQ
                     ALAQKKENLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKENIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
     gene            complement(13256..16858)
                     /gene="dnaE"
                     /locus_tag="SF008_000536"
     CDS             complement(13256..16858)
                     /gene="dnaE"
                     /locus_tag="SF008_000536"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEG8232837.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGMEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLELNLGNPTPPNFKFTREYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGPEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGIIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLEFEGLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGTKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLYHTDFIISDSIVEEISNKYA"
     gene            17108..17293
                     /locus_tag="SF008_000537"
     CDS             17108..17293
                     /locus_tag="SF008_000537"
                     /inference="COORDINATES: protein motif:HMM:TIGR02174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232838.1"
                     /translation="MAEELQSDFKDVEVEFEIGGRGDFIVEVDGKVIFSKTQLINCES
                     ERFPYQNEINQLIKNRV"
     gene            complement(17306..17635)
                     /locus_tag="SF008_000538"
     CDS             complement(17306..17635)
                     /locus_tag="SF008_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HEG8232839.1"
                     /translation="MKFYGIKNCNSVKKAIDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(17632..18972)
                     /locus_tag="SF008_000539"
     CDS             complement(17632..18972)
                     /locus_tag="SF008_000539"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HEG8232840.1"
                     /translation="MWAKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVIK
                     IGRIAGQFAKPRSSDFEELDGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAT
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLSGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKARK"
     gene            complement(18996..19409)
                     /gene="uraH"
                     /locus_tag="SF008_000540"
     CDS             complement(18996..19409)
                     /gene="uraH"
                     /locus_tag="SF008_000540"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HEG8232841.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
BASE COUNT         6863 a         3267 c         2597 g         6687 t
ORIGIN      
        1 tatttaaata tcatctaaaa gcacaacatt aatataactt ttctaaaaat tgatccagac
       61 ttaattaaat ataaatttaa aataagtata attttaaaac attttatatc aaaggaaaaa
      121 aatgaaaaaa atattaagca ttgctctagt tgctttagtt ggtttatttt taggtgcttg
      181 tagtgattct aaaaataaag aatcaaatgc aagtgtagaa ttaaaggttg gaactgctcc
      241 aaattataaa ccttttaatt ataaagaaaa ctcaaaactt acaggttttg atactgattt
      301 ggttgaagag attgccaaaa aaaatggtat taaaattgtt tgggttgaaa ccaatttcga
      361 tggattgatt cctgccttaa aagctggcaa aatcgatatg attgcctcag ctatgagcgc
      421 aactgatgaa agaagacaaa gtgttgattt taccaaacct tactatatga gtaaaaatct
      481 ttatcttaag ctaaaaaaca acgactctct tcaaacaaaa aatgatttag aaggtaaaaa
      541 aataggagtt caattaggaa ctttacaaga aaatactgca aaagctatca aaaatgcaca
      601 agtacaaagc aataaagatt taaacatagc tgttttagca ctaaaaaaca acaaaattga
      661 tgctattgta gctgatcaag atactgctaa aggtttttta gctgaaaatc cagaattggt
      721 aagtttctac caagaaacag atggaggaga aggctttagt tttgcttttg ataaaaataa
      781 acaaaaagat attattgaaa tatttaacaa aggcatagat gaagcaaaaa ctgatggatt
      841 ttatgatact ttaattaaaa aatatgaatt agaataagcg tgaattttca cgcttatagc
      901 ttaaaaagtt aaaatttcat attttctctc ttttgcaatt tttaaaattt tttcatcgcc
      961 attacataca aaggctttgc taacagactc tagtaaaggt aaatcattga tagaatcact
     1021 aaaaaaataa gaatctttca tccatttttc ataatcttta cccaaatatt ccttaagtct
     1081 taaaaccttg ccttccttaa agctataaat cccataagct tttccactaa atttatcacc
     1141 cacacgctcg cattttatgg ctatgctttc tctcactccc aaaaaagagg cgatttttct
     1201 aactaaaaat tcagccgtag ctgaaattat aatacacctt tgatcttgat atttgattat
     1261 aagttcttta gctttttcat aaggttttat ataaattttt ataaattcat ctactaaaga
     1321 tgaaattcta tcttcatttt tacccttaac actttgaaga aaaaaagtca taaattcatc
     1381 catatcaagc tttttttctt gatattgttt ttgataaaaa acgatttttt ctaaatattc
     1441 ttgaggtaaa aaaccttttt caacacaaaa tttaagccaa agtttagcac tatcgccttg
     1501 tattaaagta tcatctaaat caaataaaac aagcttcatt ttaactcttt tgctaaagaa
     1561 agattgaatt ttaaagcgat tttatcacct gcttcataag tactatgagt gctaaaattt
     1621 aaagtatcta ccttaaattc aatttcttgc actctaaccc tatagcgtat gatattacct
     1681 agcaatgatt tttctttgat cttagcctct aagccttcgt tagaaatttc tatggtttca
     1741 ggacgcaagg ctatatcttt tttaaaatcg tgttttaaac ccaagctatc aagctcttta
     1801 gggcttaaaa tattgtaatt tcctataaag ctagccacaa aatgagattc tggcaaaaaa
     1861 taaagattgt ttgcgttgga attttgtatg attttaccct cattcattaa aataatccta
     1921 tcggataact ctaaagcttc ttcttgatcg tgcgttacaa aaatagtggt gagttcaagt
     1981 tctttttgaa tttctttaat ttgcaccctt aaatgcttac gaattttagc atcaagtgcc
     2041 gataaaggct catcaagtaa aagtaaatca ggtttagtca ccaaagatct tgctaaagcc
     2101 actctttgca tttgtccgcc tgaaagctta tgtggataag ttttagcgta ttcttcaagc
     2161 tcgacgagtt ttaacatttt tttcactctt ttttctatgt cctttttatc catttttttg
     2221 atctttaaac caaaagctac attttcaaaa acgttaagat ttggaaaaag agcgtaattt
     2281 tgaaaaacca tacctatatt tcttttttga ggacttaatt tggtaagatc tttatcattt
     2341 aaagaaattt ttcctccatt aatttggcta agccctgcta tacaccttaa aagagtggat
     2401 tttccacagc cacttgggcc caaaagggtt ataaactcac cctttttagc actaaaatta
     2461 atatcttcaa aaataatttt atccccataa gcttttttaa aatttttaat ctttaaataa
     2521 gccatttttt actccttaat caaactagct ataaaagttg ttataaaaat taacacaaaa
     2581 taaactatta ccaaagcact agaataatgc ccactttgat ttttgatatt ataaagataa
     2641 acttgcaaag tctcataagc acttcctaca agaatatttg catataaaaa ttcgcctatt
     2701 aaaaaagaaa aacttaaaaa aactgccacc aaaattccat ttcttaaatt aggcaagaca
     2761 agcttaaaaa tcgctcccat taaagaacct ccaagcatag cattagatgc gatgagttca
     2821 tttaaattga cattagacat agcattatct aaagccctat atataaaagg caaagctata
     2881 gtaaaataag taaaaatgag tatccaagct gtgcctccca tattgtcagc ataaagttgc
     2941 aaaagcccta cacagctaac tataggaggt acagcaaaag gcatgataat aagtatattt
     3001 acaaaggctt ttaattttaa aaaataataa tttagcacaa aaaccaaagg ggaaacaaga
     3061 atcacagaaa gtaaaatact gcccacacaa acaagcaaag aatgccaaag agcaagtaaa
     3121 aatctttcat catgaaaaag ttcttgatac catttaagcg taagatcatc aggcaaaaca
     3181 cttacacccc aagaagtgga aatagaatat aaaaaagtag ccattaaagg caaagctaaa
     3241 aataaaaaaa ccaaaaacaa aactgcataa tgataaattt tagcttttaa actcaaattt
     3301 tcattcattt aaagcacctt aaaattatat tttttagaaa gaaaattggc tataaaggta
     3361 atagcaagca tgataatagt tataatgatg cttaaagcac tagccatata aggatcaaga
     3421 ttgatatcgc ctgcgattaa agcagcgatt cttacagggg cgacattaaa atttcccgaa
     3481 cttaaagcat aaatagtcgc ataagctcca aaagcattgg caaataaaat cacaaaaaca
     3541 ccaaacaaag caggagcgag caaaggcaaa gctattttta accaatataa aaaattgcct
     3601 ccacctaaca ttttacaagc atttaaatgt gaattttcaa gacttttaaa agctggaagc
     3661 aaaagcaaga ttgccaaagg aatttgaaaa tacacataaa caatatttac cccgaaatta
     3721 gcataaacac taacaaaagg ctctatacct aaattcttca aaaacacatt aactacacca
     3781 ttgcttccaa gaactataat gaaagcaaaa gctaaaggaa ctcctgaaaa attacttatc
     3841 atagtattta aagaaaagag aaaattacat atttttgatg gagctaaaat aaataaagaa
     3901 tagctcgcca aaagccctat taaaagtcca aaaatactag aaataaaact gatttgtaaa
     3961 gaatttataa tgctttgtag atagaatttg gactcaaaaa tatgtataaa attggctaaa
     4021 gaataaattt catcctcttc tacataaaaa gcattaaaaa caatccaaat caaaggtgct
     4081 atcataaaaa aagtaaaaac tataaaaaaa ggtaaaatac ttaaaaaggc tagaaatttt
     4141 tctttcattt tctggccttt aaaatttcat cattatatct cttatcgtgt ttaagtccta
     4201 aaatttcaca gacactgcca caaatttcat cctgttttat cttagcattt tcatacgaaa
     4261 aagcactacc aaaagtgaaa aaaggcacta aaatttcatc ttcgcttaag cctccatgac
     4321 ttttaccctc tgtcatacca tgatcgcttg tgatgattac attaatacct tgttctaacc
     4381 aagtaggcaa atactcagaa atcaaaacat caactttttt ggttttatta gcatactcga
     4441 tagagtgtga gccaaattta tgtcctgcat catctatatt catagagtgt ataagagtaa
     4501 aatctagatt atatttgttt cttaaatgct ccccatctgc aaataaatga gaatctaaat
     4561 aatcatcttc ataataaaaa tgtccataag gtaaagttaa attttcatct tctatatggc
     4621 gatgtaaaga aggaataaat tcttttttat tataaagctc aaaaacccaa tgataagctg
     4681 cgcctccagc ttttaagcct tgttctttgc aaaggtcaaa aatgcttgtt tgttttgaaa
     4741 aactcgattt attattaatt atcccactta aaacaggctt tacgcctgtt aataagcact
     4801 cgtataaagg gacgagacat actaggaagt tcgcattcta aagaataaaa tttgcctaaa
     4861 ttctctttgc aaagtgcatt caaatatccc atatttatac tagtgctttt acaatttaag
     4921 ccatcaagca caactaaaat aactttggac atcatttact ctttaaaaaa tcttttactt
     4981 caagcaaaat aaactcatta tcatcagtct tattaggttc tctacttgaa gaataaggaa
     5041 agttattgtc attttctaca actatatgag agtcatctac tatatccaca ccttctatgg
     5101 tttcaaaagg aaaaacaaat ttatcattta ccaaaggctt tttagaaatt ttatttctat
     5161 ccttaatatt taaaagatct atataagaaa ttttttgagc ttcatgagtt ttatcatcta
     5221 atttaacctt ataaattctt ttaaattgag ctacattatt aaaacaatgc ttagtatctt
     5281 caccttcttt gcaagcctta tctttagtgc cttctttttg atctctttct atgatgatgc
     5341 cgtatttatc atctatcata ttaaaatcac ctatggaatg gcttttatct tctaagaaat
     5401 atttataagt ttttccggtg aattttttat tttttacatc aaattctatg attcttagat
     5461 attctttacc tttttcattc tcataagcgt tgttattata aatgcttcct tctaaaagca
     5521 aataaagttt agaaccatct ttagagcttg ccatagcttc aaagccttta gaacgcttga
     5581 tattaaattt ctcattttct ccatcaggct tatcgctaaa ttttaaactt ggattatcag
     5641 gagaaataag ttttttaccc tccacataca catcaaaaac ttctttcaaa ttcccattct
     5701 tatcaaaatg aagcaaataa ggaccaaatt catcacctat ataaaattca tcattgataa
     5761 cctgtatact ctcagtatca aaatcagccc cacttaaata cctttcttta gttgtttcgg
     5821 tggttatagg ataggggtat tttttatcac tatctttaaa aaaaactgtt tttaaaagtt
     5881 cgtattttga gtttttaaaa tcaaatttaa actcgtgagc ataaagcata gaatcataag
     5941 aattatactt tttacccaag ccattatcgc taattaccca aaaaacatct ttttttggaa
     6001 tatattttat cccactatgt ccttgtatag gttgattttt aaaaggtaaa taaaaatctg
     6061 tttccctgtt tcccttagat ttaaaagttc caattttttc ttctctagtg atatttgcaa
     6121 atttcccata agttttaaaa aaatcaggag catccttagg aggttttact gtacttttag
     6181 aatctatgat aatatgccct gctaaattgg cctcatactc ttgaactcca aataaaacac
     6241 tgcaaagcat agcacttgtt aaaataacct ttttcatcca atctccttta tttcatatcc
     6301 actataactt tttcttgcca aagttgtggt aattctttag cgcttttttc ccaagctttt
     6361 tgatctttga ttgctcttgc atttttgtat tgctcacttg gtaaaagttt ggcttttata
     6421 tcatctggca aggtaatatg atcaattctt attggccttg cataaccttt tgctagattg
     6481 atttgtcctt tatcagaaag tataaactca cgagctaatt tagccgcatt tggatgtttt
     6541 gcgtatttat tgataatagt tgtataaccc gaaataacac taccatcagc agggattaaa
     6601 acttcataac gatctttgcc cactttatct ctatagccta aaccattaaa atcccaaact
     6661 aaacccactt caacttcacc tttttcaaga ttggctatac ttacatcatt atttacaagt
     6721 cttccttgtt tagctaaagt attaaaaaaa gctaaagcag gacttaaatc tttttcatcc
     6781 ccacctaagg cataattagc tgccaaaact gcactcacag cttgagctgc tacacttaca
     6841 tcacccacgg taattttata atttccctta agcaaatctt gccaagtttt aggtatatct
     6901 tttactacat ctttattgac tataaaagct atggttcctg tataagctaa aagccaattt
     6961 ccatctttat ctttagccca agttggaatt tgatcccagt aacttgtctt aaaaggctga
     7021 gccactcctt gtttaaccgc tatctctcca aaagaagccc ctatatcccc tatatcaccg
     7081 cttgcatttt tcttttcggc tttaaattta gcaatttctt gagctgaact catatctgta
     7141 tcactatgtt ctatgccata aagattttta agatctgccc aagtatcctt ccagtttgcc
     7201 caagtatcag gcatagctaa agaatttacc ctaccttctg cttgcgcagc tttaatcaaa
     7261 ttctcatcaa tagcttgtga atttgaaaac aataaagcaa caagacctaa acttaagaaa
     7321 aattttttac tcattttttt cctttcaaaa aatattttgg aaatttaatg agttttagaa
     7381 acattttaga aacaagttaa tttttaagca aacaaggtta taattttaaa gtcataaaca
     7441 aggagcgatc atgctttata tttatatcaa aactcaaaat gctttagttc aaagaatcaa
     7501 ttttaatctc gatagccaag aactaccgca aaatatttta tggattgatt tacttcatcc
     7561 aagtgcagca gaaattgctt ttatatcaag tgaatttaat cttgagtttc ctacaaaaga
     7621 agaaagggaa gaaatagagc ttagcgcaaa atattgggaa gataatgcga caataaccat
     7681 caatgctcat tttttagtaa gagatcttaa aagtgatgaa gaagatagga atttaatcaa
     7741 gcttcgcaca gaaattgtta cttttgctac cgctaaaaat atcttattta ctataagata
     7801 taacgaattt agcacttttg aagaaattca agcaaggatt ttagctagtc cgaagaattt
     7861 tgaagatggt tttgatatta ttgataaaat gtttgaagta cgcgttgaaa aagatgcgga
     7921 tttactagaa tggatagata aagaagcaag acgcttaaga acaagtgttt tagaaaaaaa
     7981 agatgaatat agttatgatg aaatgctaaa ggatatttca agtttgcaag agcttaatat
     8041 gcgcgtaaga gattctttat ttgataagcg tcgtgctatg acttctttgc taaaaagcga
     8101 taaaatcgat aaagatataa aacaaaatct cactatagtt ttaaaagact taaattcttt
     8161 ggttgaattt agtgtttcgc aacttaatat cttagataat attcaaacta ttttagccag
     8221 ccaaatcaac atagaacaaa acaaaatcat taaaattttt accgttgcaa ctgttgccat
     8281 gatgccacct actttaatag gaactgttta tggtatgaat tttaaattca tgcccgaact
     8341 tgaacttcac tatgcttatc ccatagtgct tggtgtaatg gtaatttcta tcattttacc
     8401 tttggttgtt tttaagaaaa aaggatggtt ataaaaattt attaaggaga aacaatggat
     8461 acaataaaca taggaatttt aaccctaagc gatagagcaa gtagtggcat atacgaagat
     8521 aaagccactg ctgaaattga aagagtgtta aattcatata taaaaaatga tattatttat
     8581 cataaagaat taatccctga tgattatgat ttgatcatta aaaaattact ttatctagca
     8641 gatgaaaaaa aatgtgattt gattgttaca agcggaggta caggtccagc acttcgtgat
     8701 gtaaccccag aagccacgga agctatgtgt gataaaatga tgccaggttt tggagaactt
     8761 atgcgcttag aaagtttaaa atatgtccca acagctatac tttcaagaca gagtgcagga
     8821 attcgcaata aatcttttat cattaattta ccaggaaatc ctaaggctat aaaagaatgc
     8881 ctagagcctg tttttccggc tataccttac tgtatcgatt tgatagaagg tgcttatata
     8941 gaagcaaatg atgaagttat taaggttttt cgccctaaga aaaaatgtca aaattaaaat
     9001 ttattagctc tgataagtct gcttaattgt ctagcaagca gacttgccga agcttcatct
     9061 ttgcttatct tttgcacttt atttttaaac ttacaaagtc tgtcatctaa aatcacatca
     9121 ttgattggaa ttttaggctt ttctttttgt ttttgtgaaa tctttttctt aaaaaacatt
     9181 ctttaatcct ttttttataa atatacacca acttagttga aaagaatatt attttagatt
     9241 ttaaactatt aactttattt cattatttta agctagaatt cgcaaaaaac caatcaagga
     9301 aaaataatga ctttaattgc aattttatgt ctttacacag cacttttatc ttggatttcc
     9361 tatgctcaaa ttcgtttctt agaaagagaa aaagacaaac aagctcaaat tttaagcgaa
     9421 aaagactatc aaaatgcagc agatattgcc atcgaaaatg aaaaatttaa actattttcc
     9481 aatttttata atttaatcat caatattgca tggataggtt ttggattttt atatcttaaa
     9541 gaattgctta tcttaaacaa cactcgtttt gaaaatactt tatttttatt atctttttta
     9601 ataatcacaa gtattttaaa tctaccttta agtatttatg aaagttttat caaagataaa
     9661 gcccatggtt tttcaaatat gactgtaaaa ctttttatca aagacactat gaaaagtctt
     9721 attttaactt taatatttgg atttttaatc ctttatgctt tgcttttttg ctatgatttt
     9781 tttggaactt tttggtggat tgcggccttt atttttgcct tttgtattat agtgattata
     9841 aatctcatct accctacctt aatagcacct atttttaata aaatgaaaaa actagacgat
     9901 gaaaatttgc tgaaaaaaat cagctctttg atgaaacaat gtgggtttag tgcaaatggg
     9961 gtttatgtta ttgatgcaag caaaagagat aagcgtttaa atgcttattt tggtggactt
    10021 tttaaaagca aaagagtggt gctttttgat acattattaa aagccttaaa tgaaagagaa
    10081 cttttagctg ttttaggaca tgagcttgga cattttgttc ataaggatat tatcaaagct
    10141 ttatttaacg gcgttataat tatgttttta cttttttttg tttttgcaaa tttacctgaa
    10201 tttgtttact tagaaagtca tctagaagga gtaaatggtg gcgtgtttgc tcttttattt
    10261 atcttggcaa atatttttag ctttttaatc tctcctatac ttaacgcctt aagtagaaaa
    10321 aatgaatttg cagctgatca acacggagct aaagttacaa gcaaagaaga tatgaaaaat
    10381 gcattgatag ctctagcaag agaaaataaa gcttttatca aaacaagtaa aatatatgca
    10441 tttttttatc tcagtcatcc aagtattagt gatagaatca aggctctttc ttgactataa
    10501 aaaatgctct tatggaagct aaatctagct taaaaggtta tgaaaatgaa gcagtattta
    10561 tactctgtga atatctaaaa aaagataaag cttggttatt tttaaaccaa gatataaaaa
    10621 tagatcatga accttatttt gagcttataa agcgttttaa atctggagaa ccttttgaat
    10681 atatatttga aaaagtggat ttttggggct tagaatttaa tataaaaaaa ggcgttctaa
    10741 tccctcgcta tgatagtgaa attttacttt ttcaaatttt aaatttatgc aaaaaaaata
    10801 cttttaatgg gattttagaa ataggatttg gaagcggaat tttaagcatt gttttagcca
    10861 aagaacttga attaaaaatc acagcctgtg atatcaatcc caaagcctta gaattagctt
    10921 tagagaatgc caaattacac aaagtcgatc acttgattga ctttaaactt tgtcatttta
    10981 agcaaattaa agaaaattat gattttattt tttcaaatcc accttatatt aaaaattcat
    11041 atcctataga tatttgggtg caaaaagaac cgaaagaggc tttatttggc ggagaaaaag
    11101 gatatgaaat tctagaagaa atcatacatt tttcccttga taaaaaagtt aaatttttag
    11161 cttgcgaatt tggctatgat caaaaagaaa ttttggaaaa aattttatat caaaataatt
    11221 tcattgttga ttttttcaaa gatgaacaag gttataatcg tgcttttata gctaaattta
    11281 caaatatgcg ttatgataaa aaataaaagg agaaactctt gaaagctgtt aatttatttt
    11341 tacttgcctc tatcataggg gttgaactca tactaggaat agttgttgca ccaacaattt
    11401 tttttcctca aaatcttata ggagaaggag tgttgagcca ttttcaaagt ggcttaatga
    11461 tgacgcaaat ttttattaag atgggatatt tgctgatttt tgtttcagtg gttaattttt
    11521 tatatgaaat ttattctctt ataaaagatg aaatgaaatt taaaataaaa ttttcaaaat
    11581 ttatgctgag tttgcttatt ttgattttaa gcttaatatt tgttttttat tttactaata
    11641 ccataattga actccaaaac ttaggcgaaa acactacaaa aactcaagaa tttatcagca
    11701 tccataatgc aagtgaagtg gtgattaaaa tcatcttgat aatgcaagtt tttttatatt
    11761 tcttaagctt taaaatagca aaaaaatgat aaaatattaa ataaatccaa aagagaagga
    11821 gtaggccatg atgatctctg atgcaactat aatgcaacaa aattattatt taaataatgc
    11881 acaaaaagct agcgataaag ctttagaaaa tattgcagct gttcgcgcaa taagtggagt
    11941 tgatagtgct aatttagcta ttgctgattc tttaagatct caatcaagca ctatagatca
    12001 aggtgtcgca aatgcttatg atgctatagg ggttttacaa attgcagatg ctagccttac
    12061 caatatctct caaagcgcag atagacttaa tgaactttca gtaaaaatga acaatgctgc
    12121 acttaatgat tctcaaaaag gaatgctaag aacagaagca acacgcatac aagaatccat
    12181 caatgattct tttaataatg caacttataa tggaaaaaat gtctttcaaa ctatgaattt
    12241 tgtagtaggt agcggaactg aaactacaaa tttaaatcca ttagcaacag atggattaag
    12301 catagataat caagatagta ttacaaattt tatggatcaa cttggaagtt taagaagtga
    12361 aataggctca ggtatcaatg ccatcacatc aaatattaat gcaagtgttc aaaatagcat
    12421 caactcaaaa gcagctgaaa ataatttact aaataatgac atggcaaaaa atgttaatga
    12481 ttttaatgcc aattatctaa aagaaaatgc tgctgctttt gttgctgcgc aatccaacat
    12541 gcagcttcaa agcaaaattg ctaatttatt acaataaaat aagccctaaa tagggcttat
    12601 tttttatcaa aatgacttta gagcaaattt tagaaaaaac caaaaacgtt cgtcttgtag
    12661 ccgcaagcaa gtatgtcgat gcaagtataa ttgaaaagct ttttgatcaa ggtatagtag
    12721 aatttggaga aaatcaagtc caagctctag cacaaaaaaa agaaaatctt gatgaaaaaa
    12781 aactagacat aaaatggcat tttataggaa cgctacaaag caacaaaatc aatctcttaa
    12841 tcaaacaaaa acctatatta tggcactctt gtaatggtat taaaatagct aaagctatgg
    12901 acaaaagact tgattataaa ttaaatactt tattagaaat caatagtgca aatgaaaata
    12961 gcaaaagcgg tctagatcca aatcaagccg tagaagaata tttacaaata caagaagaat
    13021 gctctaattt aaatctttgt ggcgtaatga gcataggatc acacagccaa gataaagaaa
    13081 atattataaa aagctttgaa actacattta aaatttatga aattcttcaa aaacatgggg
    13141 ctaagatttg ctctatgggg atgagtaatg attttgaaat tgctataaaa tgcggatcca
    13201 acttggtaag actcggaagc attttattta aaaatcttaa gtaaaacaat cttacttaag
    13261 catatttatt agaaatttcc tctactatac tatcagagat aataaaatct gtatgataaa
    13321 gcaggcaaga tcccgcgcta ataactttta aaacaagttt tttattattt ttttcattag
    13381 gattatgtgc atttctagca atttcatgaa tttcatagat taattctcta tttaaccttg
    13441 tcaaatctag ctctatgata tttttttcaa attccttagg ttctgcggta aaatgatttt
    13501 cttctttatt tttaaaatct ttttttgtgc caaatttttt tatagcttta atctcaccat
    13561 cttcaagact ttgcaagtct ttaattgctt ttaaaaaaaa gctgggcttt tcccctcctt
    13621 cagctttaaa tcccaataca aaaccataag cattattttt caaattttca tctttaatga
    13681 tattttctat ttcttctaca ttactttcaa atacagtagc atcaaacgaa gaataataat
    13741 ccaaaatttc aattctacca taacgcttat tatttttact catcatagat ttaaaatctt
    13801 caattttacc tatacttaaa atttctccat tgttttttaa accttcaaac tctaaacttt
    13861 taacataatc tatggcatta atttgttcat aaaatcgatc taaaggatgg cctgaaacat
    13921 aaattcctaa aatttctttt tcatatccca atttttccat cacttcaaat tcttcatttt
    13981 tgggagtaaa atttacttga acacctgaag ttaactcctc ttcaccaaaa agagaacttg
    14041 cagcattttt tcttacttca gccattttac gcgatgcttc gctaagattt tccatattat
    14101 caaacaaagc ttttctagta aaaccaaact catcaaaagc ccctgcctta ataagacttt
    14161 ctaatgttct acggtttatc ttggtaggat ctatcttacc taagaaatca ttaatatcct
    14221 taaattctcc atcttgcctt gcttcaagta aattttcaac tgcaggaata cccacacttt
    14281 ttatagcccc aagtccgtat ataatagcat ccttgccatc ttgctctaaa gcactaaatt
    14341 cacggatcgc tttgttaatc gatggaggta aaagtttaat attcattttt ttcatctcat
    14401 caatataaac agcaatttta tccacattgt tttcttcgct tgttaaaagc gctgccataa
    14461 attcactagg ataataagtt tttaaataag ctgtttgaaa agtaatcaac gcataagccg
    14521 cagagtgaga tttattaaaa ccatatcctg caaattttac gataagctcc cataaatcct
    14581 cagcttttgc tctatcatat ccttgttttt ctgctccatc tgcaaaatca gttttaagct
    14641 ttttcatctt ctcaggatct tttttaccca tagcacgacg cactacatca gcacctccta
    14701 aagaaaagcc acctataatt tgaacaattt gcataacctg ttcttgataa acaataatcc
    14761 cataagtagg ctctaaaacc ttttctaaac tgtcaaaagg atattctata ctttttaaac
    14821 catgctttct gtcgataaaa tcatcaagca ttcctgattc catagggcct ggacgataaa
    14881 gcgcaagaac cgcaatgata tcttcaaaac gctctggttt taagcgtgca tttaagcttt
    14941 gcataccgcc tgattcgatt tgaaaaattc ccaaagtatt tccactttgt atggttttat
    15001 aaactttgct atcatttaca tctatagttt cccaaataat gtctttattg taacgctttt
    15061 taataagctt gatcgcatta ttgattactg ttaaggtttt aagacctaaa aagtcaaatt
    15121 ttatcaaatc tacatcttct aaatgatctt tagaatactg cgttaccaaa tgtctttcat
    15181 catttttact ttgtctaaaa agcggagttt tcttccataa actttcatta gaaattacaa
    15241 cacctgctgc gtgcataccc gcattgcgat ttaatccttc taaagctctt gcatactccc
    15301 aaacttcagg acctttagga tgacgatcaa taaattcttt gattttaggt tctttttcat
    15361 aagcagcatc aagagtgatt ttaagctctt caggcacaag tttagcaagc tcatcagcat
    15421 cttgaatact catatcacaa actctagcca catcacgaat caccccttta gccaaaagtt
    15481 taccaaaggt aatcacctgt gcaaccttat ccgctccata tttatcaatc acatagtcaa
    15541 tcacttcagc acgtctgtct tgacaaaaat ccacatcaat atcaggcatg ctcacacgct
    15601 caggatttaa aaaacgctca aaaagtagac tataaggaat aggatctaaa tccgtaatcc
    15661 ttaaacaata agaaaccaaa cttcctgcag ctgatcctct tccagggcct actggaatac
    15721 ctttatcttt agccacttta ataaaatcat gaacaataag catataacct gaaaatttca
    15781 tatttttaat gatgttaatt tctacttcaa gtctttgttt gtattcttca tgcttgcttt
    15841 catcgataaa ttttaatctc tcttcaagtc cctttttaca aagttcttca aaaactatgt
    15901 catcattatc aaagctaaat tcttttgttt cttcaggtaa gataatatta tgatctttag
    15961 catattctct tgtaaattta aaattcggtg gagtgggatt gccaagatta agctctaaat
    16021 tacatttttg cgcgatttct tgtgtatttt ctatagcttc tggaatatct gcaaaaagct
    16081 cactcatttg ctcagggctt ttaacataaa attcatgcac actatgacgc attctatcag
    16141 ggtcattaag tttttttccc atagctatac acataaaaac ctcatgggca gccgctcttt
    16201 ctttaaaagt ataatgcgta tcatttgtag caataatttt tatatttaat tctttagaaa
    16261 gtctgataat atcatcatct atcattcttt gatcacctat accatgacgc atgatttcaa
    16321 aataaaaatc atctttaaaa acttttttat accataatgc tgcttctttt gctgcttcat
    16381 agccttttgc accaaaacgc acatttcttt cactataagt atttaagtgc caatttactt
    16441 caccttgcaa gcaagcagaa gaacaaataa gaccttcgct ataatcttcc aaaagctttt
    16501 tattgatacg cggataataa tacaaacctt taatataact ttgagaactt aaatacatta
    16561 aattttgata tccgatctca ttttttgcat acaaacaaag gtgaaaacgc tgacgagaac
    16621 ttttatcatc taattcatca tgattatgta aatacgcttc cataccaatg ataggtttta
    16681 aaccttgtgc tttcattgtt tgataaaaat caattgcccc aaacatattt ccatgatctg
    16741 tcatagcaac acttgtagca ccctgctctt ttaaagtcaa agctaattct ttaagtttat
    16801 tggctccatc aagcaaagaa tattctgtat gtaaatgcaa gtgtgtaaat tgactcattt
    16861 tcttccttta attttttaag gcttatttta attttgataa aaattataaa tttttctcgc
    16921 tgaatttgaa agaaattagc cctaaatttc aacttaaatt tgacaaaaag gcaaaaattc
    16981 agccaaaata aactataata aagtctaaga ttttaatctt aataaaaaga acttttcaaa
    17041 ggatgaaatg atgaaagtaa aaattgctta ttgcaatctt tgaaattatc gcccacaagc
    17101 tgcaaggatt gcagaggaac tacaaagcga tttcaaagat gttgaagtag aatttgaaat
    17161 tggcggcaga ggtgatttta tcgttgaagt agacggaaaa gttatcttct ctaaaacaca
    17221 acttattaat tgcgaaagtg aaagatttcc atatcaaaat gaaattaatc aattaataaa
    17281 aaatagagtg taatcaaaca ctctatcata acattttctc atattcctta ccaatatata
    17341 tgttttgctc atactcgata ataggacgct taatacaact tggattttct aatacaattt
    17401 tttcaagttc tttttcattt aaatttttaa ctttttcttt gtttaagcca agttttttag
    17461 aagttaatcc agcagtattg ataagttctt caaaagattt ttgttttaac catgtgtata
    17521 aaatatcttg attaatcttt ttaatatcca taaaatcaaa cacaatacct ttttgtgtta
    17581 aagcatctat agctttcttt acagaattgc aatttttaat accataaaat ttcattttct
    17641 agcctttttt accaaatctg cgattaaaaa agcaagttct aatgcttgat ccgcattaag
    17701 tcttggatcg cattgagtct cataacgatc ttccaagctt tgagcagtaa cattgcttgc
    17761 accacctgtg cattctgtta catctttccc agtcatttca agatgcactc cacctggata
    17821 aaccccttcg cttattgcaa tctcaaaaaa agatctcact tcttgcataa ttttatcaaa
    17881 ctcacgtgtt ttaaaattgc ctgcttttac cgtatttcca tgcataggat ctatgctata
    17941 tactaaattt aaaccttcac ttttaagttt agagaaaatt tttggcaaat tattgataat
    18001 tttatctgca cccatgcgga taataatatt taatcttcct tcttcattat ttggatttaa
    18061 aacatttgct aaagctatga tatcatcagc acttgcacta ggtcctattt taacccctaa
    18121 aggatttttt actccactta aaaaatgcac atgagcttca tcaagcgccc ttgttctttc
    18181 acctatccaa agcatgtgag ctgaacaatc gtaaatttct ccacttaaac tatccactct
    18241 agttaaagct tcttcataag gcaaaagtaa agcttcatgt gaagtataaa cactaacttc
    18301 tcttagactt ggagtattac ttgtattaat tccacaagct tccataaaag ctaaagcttg
    18361 tgaaattttt tcactgatat cagtatattg cttatggagt tcactctttt ttaaaaagcc
    18421 caaattccaa cgatgtactt catgtaaatc tgctaaacca cccttagcaa atccacgcaa
    18481 caaatttagc gttgttgcgc tttgataata agcttcaagc attctatgtg gatcaggaat
    18541 gcgtgcttgt tcactaaatt caaaaccatt aataatatca ccacgataac taggaagact
    18601 tataccatct aactcttcaa aatcactact tcttggcttg gcaaactgcc ctgcaatacg
    18661 accaattttt ataacaggac atccaccagc aaatgtaagt actatagcca tttgaagtaa
    18721 aattttaaac atatcacgga tatttacagc gccaaaattt tcaaaacttt cagcgcaatc
    18781 tccaccttga agtaaaaaag cttctttttt acaaactctt gctaaagact tttgaagatt
    18841 tctcacttct ccagcaaaaa ccaaaggagg aagtttctca agtcttgcta aaactctatt
    18901 catttcctct tgatctggat agataggttg ctgttttata ggatagtttt tccaagaatt
    18961 cttagcccac atggtttttt ctttcgtttt atttatcagc ttcctctata agttgaataa
    19021 ccaaaaggag aaagggttat tggaacatga taatgtttct gatctttaga aagctcaaaa
    19081 cttacctcta caaaaggata aaaagtattt attttgtgtg atgtgtaata gtcttttgta
    19141 aaaaatttaa gcttataaat tccaaaagcc ctattttcag ctttttcata tggtaataaa
    19201 tctcctattc taccattttc ttcggtaaat tcttcactta cttttttcca ctgttgattt
    19261 gcttccaact tataaagctc aacttttact ttaggagcag gttgtccaga agtaatatcc
    19321 aagacatgag tacttaattg atattcagta gcactcaaaa acattggcac gcttgctagt
    19381 attaataaag tttttttaat agaaaacatt ttct
//
LOCUS       DARGEY010000016        18871 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.016, whole genome shotgun sequence.
ACCESSION   DARGEY010000016 DARGEY010000000
VERSION     DARGEY010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18871)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18871)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18871
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.016"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            132..1475
                     /locus_tag="SF008_000541"
     CDS             132..1475
                     /locus_tag="SF008_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HEG8232842.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVVKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLAMRFALEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGLIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKIVVVASIFLILSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FNTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGTLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            1486..2136
                     /locus_tag="SF008_000542"
     CDS             1486..2136
                     /locus_tag="SF008_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEG8232843.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(2133..2804)
                     /locus_tag="SF008_000543"
     CDS             complement(2133..2804)
                     /locus_tag="SF008_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthetic enzyme MqnA/MqnD family
                     protein"
                     /protein_id="HEG8232844.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGFKASMEHKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTLNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSKYIDLCAKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQKYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(2810..3436)
                     /gene="upp"
                     /locus_tag="SF008_000544"
     CDS             complement(2810..3436)
                     /gene="upp"
                     /locus_tag="SF008_000544"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEG8232845.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEV
                     SKDFSLKEIEISTPIQKTIVKKLDEKIMICPILRAALGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIEVCNFLKSQGVKKIKFISIL
                     AALQGLQKFSQTHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(3433..4668)
                     /locus_tag="SF008_000545"
     CDS             complement(3433..4668)
                     /locus_tag="SF008_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEG8232846.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSHDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEIDVHSVEEIVNFCKALAPTVGGINLEDIAAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFAVDSKEKTLKDVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDTIVGTGRSDYPNQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFNEKAYFESLK"
     gene            complement(4670..6061)
                     /locus_tag="SF008_000546"
     CDS             complement(4670..6061)
                     /locus_tag="SF008_000546"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEG8232847.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDEGKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGRYREFTGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVRFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNVKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYEKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFINKNNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLEVDEC
                     KKRIENFLKVRGK"
     gene            6126..6941
                     /gene="salC"
                     /locus_tag="SF008_000547"
     CDS             6126..6941
                     /gene="salC"
                     /locus_tag="SF008_000547"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HEG8232848.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKAL
                     KIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLTQNKTTLNAFKANLKSK
                     NQSYEQFRANFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANI
                     YLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGGFSPVLNGKNGY
                     ELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR"
     gene            complement(6978..8309)
                     /locus_tag="SF008_000548"
     CDS             complement(6978..8309)
                     /locus_tag="SF008_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEG8232849.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIITAAEIAEADAIFPGYGFLSENQNFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPPYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(8311..8766)
                     /gene="accB"
                     /locus_tag="SF008_000549"
     CDS             complement(8311..8766)
                     /gene="accB"
                     /locus_tag="SF008_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HEG8232850.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSVKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
     gene            8914..9474
                     /locus_tag="SF008_000550"
     CDS             8914..9474
                     /locus_tag="SF008_000550"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HEG8232851.1"
                     /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDDVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            9523..10527
                     /gene="pseB"
                     /locus_tag="SF008_000551"
     CDS             9523..10527
                     /gene="pseB"
                     /locus_tag="SF008_000551"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HEG8232852.1"
                     /translation="MFNGKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNAPCMRYFIGDVRDKERLSAAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPVNLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLISEGAKELPITDTRMTRFWISLEDGVKFVLSNFERM
                     HGGEIFIPKIPSMKITDLAHALAPNLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKFVDKDNDFSINALGEKGQKVKDGFSYSSDNNPLWASEKELLEIINHTEGF
                     "
     gene            10529..11659
                     /gene="pseC"
                     /locus_tag="SF008_000552"
     CDS             10529..11659
                     /gene="pseC"
                     /locus_tag="SF008_000552"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HEG8232853.1"
                     /translation="MLTYSHQNIDQSDIDTLTKALKDEILTGGKKVDEFEEALCEYVG
                     VKHACVLNSATSALHLAYTALGVQEKIVLTTPLTFAATANAALIAGAKVEFIDIKNDG
                     NIDEKKLEARLLKDSKNIGAISVVDFGGNSVEIDEISSLAKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNKELITKIKLLRSHGIIKKRLWDS
                     DMIELGYNYRLSDVACALGINQLKKLDHNLEKREEIASFYDKEFEKNPYFSTIKIKNY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGVGVQVHYKPTYEFSFYKKLLGEIKLRN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCE"
     gene            11680..11994
                     /locus_tag="SF008_000553"
     CDS             11680..11994
                     /locus_tag="SF008_000553"
                     /inference="COORDINATES: protein motif:HMM:NF027579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
                     /protein_id="HEG8232854.1"
                     /translation="MLAKLERLCNKLACELFPIPRSITGQGFRDSLEILNKTLGGGGI
                     LKFHSIKSGTKVFDWIVPDEWNVKEAYIITSEGEKICDFKKHNLHLLNYSEAIDKEIE
                     LE"
     gene            12025..12962
                     /locus_tag="SF008_000554"
                     /pseudo
     CDS             12025..12962
                     /locus_tag="SF008_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859336.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
     gene            12959..13744
                     /locus_tag="SF008_000555"
     CDS             12959..13744
                     /locus_tag="SF008_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002884337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside N(3)-acetyltransferase"
                     /protein_id="HEG8232855.1"
                     /translation="MKYFLEHNDKKYSDKDLIDAFYQLGIKRGDILCVHTELFKFGIP
                     LLSRNEFLQTILNCFFEVIGQEGTLIMPTFTYSFCKNEVYDKINSKTKMGALNKYFRK
                     QTGVKRTNDPIFSFAIKGAKEELFLKDTTSCFGENCVYEVLAKENGKYIIFGLNEGHA
                     LVHYAEEKNTTFCRYFKNFKGILINEKRKEKTITIDYYVRDLQQSYLCDINKINPIIQ
                     ETQNYKKINFAKNFIEIYNTREYVQAICQALTNDKLAIYKKDR"
     gene            13741..13965
                     /locus_tag="SF008_000556"
     CDS             13741..13965
                     /locus_tag="SF008_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8232856.1"
                     /translation="MMKQFYEILENILETKVDENTNLSMENCKNWTSLAHIDIIMSLE
                     EEFEIKFSKDELSQLKSQNELLKAIKEKLC"
     gene            13991..14867
                     /locus_tag="SF008_000557"
                     /pseudo
     CDS             13991..14867
                     /locus_tag="SF008_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807225.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
     gene            14867..16430
                     /locus_tag="SF008_000558"
                     /pseudo
     CDS             14867..16430
                     /locus_tag="SF008_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
     gene            16420..17481
                     /locus_tag="SF008_000559"
     CDS             16420..17481
                     /locus_tag="SF008_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HEG8232857.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     VIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPNFFMPSTACY
                     LHQLLNLSPKTIAFDLGQACAGYLYGLFVAHSLIQSGLGKILLVCGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNETFFELGSDGRHFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPALLCELDTPKEFKASLSAFGTGLSWGSA
                     VLNFKDLYTKDILIYTKEK"
     gene            17481..17702
                     /locus_tag="SF008_000560"
     CDS             17481..17702
                     /locus_tag="SF008_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8232858.1"
                     /translation="MTKTEFLEELKEAMHRDEDLNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFALKITAEDLKNCQKVSDLINLAKLD"
     gene            complement(17716..18871)
                     /locus_tag="SF008_000561"
                     /pseudo
     CDS             complement(17716..18871)
                     /locus_tag="SF008_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865679.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2920 family protein"
BASE COUNT         6601 a         3073 c         2878 g         6319 t
ORIGIN      
        1 tgataaagta aaaatgtaat tgtatctttt tttctttaat ttaagtttaa atacaaaaat
       61 aaaattttat ttcccttaaa gttttaataa gatagaatac ccgctttaga tcattatcaa
      121 atggaaattt tttgaaacaa tttggactag atagacgaac ttttaaaatt ttactagctg
      181 gttatattat tattgcattg tttggggctt tattgctaca ttcaagctgg gcacatacaa
      241 ctcctattga ttttttagat gcctttttta caagcacatc tgctgttagt atgacaggat
      301 tagtagttaa gaacactgcg gttgatttta ccttagcagg acaaattatt atcttagctt
      361 tggtgcaaat tggaggcttg ggatatatgg gtataggttt atttgtttat atactcatac
      421 gcaaaaaagt tggttttagt gcaagaaatt tactaaaaga gtctttattt tatccatcaa
      481 tggatggttt atttaaattt tttaaaaagg ttttgctgtt catttttact atagaattga
      541 taggtgctat acttcttgcc atgcgttttg cccttgaaat gaattttaag aaagctttat
      601 ggtttggaat ttttcattct attagcgctt ttaataattc tgggtttact atatttgaac
      661 atgggcttat agcttataaa catgatatag caattaatct tattatcact tctttgatta
      721 ttattggagg gcttggatat tttgttttgg ttgaattata cttttttcaa agaaaaaaat
      781 tgcaaaattt aagcctacat acaaaaatag ttgttgttgc aagtattttt cttatactct
      841 cttcaacact tattattttt gcttttgaat actcaaatcc tcaaactata ggacattttt
      901 cattttttga taaaatttta agctcatatt ttatcgctat taactaccgt acagcaggat
      961 ttaatacctt agatatggga catttgcatg atgcaagctt attttttgga tcattgttta
     1021 tggttattgg tggtgcacca ggtggaacag ctgggggtat gaaagtaaca actgtaatgg
     1081 ttttattgct ctatgcttat tggagtatcc gcgatggaag agttagaatt tttggacatg
     1141 aaattccaag agaaactata tctaaagctt ttatcatagc tgtaggttca gctgtttata
     1201 tagtaatagc tgttattttg ctttccttgc tagagtcaaa atttgatttt atagccttgc
     1261 tttttgaaac ttcttcagct tttgcaactg taggaatttc agtaggaaat ggtggaactt
     1321 tatctttatg cgctttgttt agtgatccta gcaaggtaat tatcatcatt atgatgctaa
     1381 gtggtaggat aggtgttttt gcttttttac tctcggtatt caaacaagac aaagctattc
     1441 atttaaaatt ccctgaagga aaggttaatt tataaaggta aaatcgtgaa aaatcttaat
     1501 tatggaatta taggacttgg aaaatttggc tcagttgtag cagatgaact cattgctgga
     1561 ggtcatactg ttatcgttgc agataaagat gaggaagctt taaaaagcat acaaaatcct
     1621 ccaagttatg cttatatttt agattctaca aatatttcag ccctaaaaga agcaggcttt
     1681 catgatgttg aagttgttat tgtcagcata ggagaaaatg ttgaaaaatc aatccttact
     1741 cttatggcgc ttaaagatat aggtgttaaa aatatcattg ctaaagcaac ctctaacatc
     1801 catggtcaaa ttctttctaa gttaggcgcc acaaaggtta tttatcctga aaaagaaagt
     1861 gctaaaagac tagtaaaaga atttttaacc aaagatgctg attatgaagt ttttgatctt
     1921 tcagcaaata ctatacgagc tattaagatc aatatagatg aaaaattagc aggaaattct
     1981 ttaaaacatg tagcacaaaa tatgaaagtg atttcttata aaaaattaaa tagcgactgg
     2041 gaaatactac ctgatttaga aaccacgaca gtttatagtg gagatgttgt aattctcctt
     2101 ggaacagtta aggaacttag agaatttgaa cactaagcaa gatttaaagc cttgcaagcc
     2161 tttacaaaac gctttaaggc tgttttttct ttggtagaaa ttttatgata tataacttca
     2221 tctaaataat atctaacatc ttttatatct aaatcccttg ttttggcata tttttgaagt
     2281 atataatagg gaattttaat ctttgttttt ggaaattttt tcaaaatttg tttatataaa
     2341 gctttttttt gcacacaaga aaatctagca aaaacaaaag gcaatcctgt tttttcatgc
     2401 cattttgcac ataaatcgat atatttagaa ggatctttta gataaagctt taaagcctta
     2461 tcgcctataa ttacttttcc atcttgtttt aatactttag ctaaagcatt tgaagttgct
     2521 gaacttggat ctttggcatt taatgtattt ttttctacta aaacacttaa aactctttta
     2581 ttggcacaaa tacccaaatc taaattttta tatttttttc tagcgctttc tatgcttgaa
     2641 atgatagctg catcaattct tctataaaat aaatctttat ttagcttact tggaactcct
     2701 tttttatgct ccatacttgc tttaaaacca ttaggtaagg gatatttctt aagatatata
     2761 tgcaaaggta aaagattaat ataatcaatt tttccaaaaa tcatctcttt taaagagtgt
     2821 taaacactct atctcctgca tctccaagcc ctgggataat ataacctttt tcatttaaac
     2881 cttcatcaat acaagccaca aaaacttcta catcatcatg cgtttggcta aatttttgca
     2941 aaccttgtaa agcagcaagt atggatataa attttatttt tttaactcct tggcttttta
     3001 aaaaattaca aacctctata gcagtcccac ctgtagcaaa cataggatct ataacaatag
     3061 cggtgcgttt ttttgcatct ttgggaagtt tttgaaaata aaaatccgcc tttaaagtct
     3121 cttcatttct cacaaacccc aaaaatccaa cacttgcatc aggaatcatc ttaaaaacac
     3181 tttcaagcat tcctaatgca gctcttaaaa taggacaaat cataatcttt tcatcaagtt
     3241 tttttactat agttttttgt ataggtgttg aaatttcaat ttcttttaaa gaaaaatctt
     3301 tactcacttc aaaaagcaaa aaagatgaaa tttcatcgat taacatacga aattgaaagg
     3361 gctttgtctc tttagccctt aaaattccta acttatgttc gatcaatgga tgattgatac
     3421 aatgaatatt tttcatttta agctttcaaa ataagctttc tcgttaaaat tttttacctt
     3481 agccacacca tcttttaccg cagctgctgc tacagctgta cttactgcag cttttactct
     3541 ttcatcaaaa ggttttggta tgacataatc tcttccaaat tctaaggtac ttaaattata
     3601 agccttttta actgcatcac ttacaggaag ttttgcaaga tctgctaatg ctttagcagc
     3661 cgctactttc atattttcag tgattttact tgcacgcaca tctaaagccc cacggaaaat
     3721 aaaaggaaaa cctaaaacat tattgatttg atttggataa tcacttcttc ctgttcctac
     3781 aatcgtatct tttctaagtc tagctacatc ttcaggcatc acttcaggaa taggatttgc
     3841 caaagcaaaa atcacaggat cttttgccat gcttaaaacc atttcatcat caagaatttt
     3901 tggcgcacta agtcctagga aaacatcagc tccttttaaa acgtctttta aagtcttttc
     3961 cttagaatca acagcaaatt caagcttttg aggagttaaa tcatttctat ctttagaaat
     4021 cactcctttg ctatctacta aaataatatt ttcaacccct aaatttctat acatcttagc
     4081 acttgctata cctgcggcac ctgcgccact tacaaccacc ttaatgtctt taaatttttt
     4141 accgcttatc tccattgcat tcataagccc tgcagttgaa ataatagctg ttccgtgctg
     4201 atcatcgtgc attacaggaa ttcctaaatc ttgcaaagcc gcttcgattt caaaacattt
     4261 tggagcagct atatcttcta aatttatccc gcccacagtt ggagccaaag ctttgcaaaa
     4321 atttacaatc tcttccacac tatgaacatc aatttctata tcataagcat tgacatttgc
     4381 aaatttttta aacaaacaag ccttaccttc cataacaggt tttgaagcct gcgctcctat
     4441 gtttccaagt cctaaaacag cagaaccatc actaactata gctactaaat tagccttatt
     4501 tgtataagta taagcaagct cattatcttt agcgatttca aggcaaggtt ctgcaactcc
     4561 tgggctatac gccaaagata gatcatggct tgtagccatt ggcttacttg gtacaatatc
     4621 aattttccca cctaaatggt attttaaagc ttcttctttt aaattcattt tattttcctc
     4681 taacttttaa aaaattttct attctttttt tgcactcatc aacctctaaa aattctaata
     4741 cttcaaaaat actaggactt accgcactcc ctgttaaagc tatgcgtata ggctgagcca
     4801 aatcttttaa ctttgcttct tttttttcta aaaaatcatt tgtaaaatct tcaaaatctt
     4861 tacctgtttt ttgatcttta agtgtattag caaatgcttg gagcaattct aaattatttt
     4921 tgttaataaa tttttgtact gcattttcat cataattttg cggtgcatta actatacttt
     4981 ttgcaccatt gataatatca tgcaaggttt ttgcacgctc tcttaataaa tcaagtaaaa
     5041 atcctgcctt ttcataaaca gataaatcaa agccaagatc cttaagctga cggttaatct
     5101 cttcaaaagg caaagtttta atataatgag cgttaagcca ttcaagcttt ttaacattat
     5161 aacaagatgc gcttttatta atatgataag ggtcaaaaag ttttttcaaa tcttctaatg
     5221 aaaaaacctc atcatcacca tggctccaac ctaaacgcac aagaaaatta agcaaagctt
     5281 gaggtaaaat tcccatttct ttgtattcca taacatcagt tgccccatgt ctttttgaaa
     5341 gctttttacc atcttctcca tgtatcatag ccacatgaaa aaatttagga attttaaaac
     5401 ccaatgcctc ataaagcaca atttgtttag gagtatttga aagatgatca tctccgcgaa
     5461 tcacatcact tacccccatt aaagcatcat caataacaac agtaaaatta taagttggag
     5521 ttccatcact tcttgcaatg ataaaatcat ccattatatc ctctgcttta aatctcacct
     5581 cgcctttaac cccatcttca aaaacaatct caccgctttg aggtgcttta atacgcacaa
     5641 caggctctat accctgaggt ggcgtgcctg taaattctct atatcttcca tcatatcttg
     5701 ggcgctcttt ggcagcttct tgcttggcgc gcaattcttc taattcttct ttactcatat
     5761 aacaataata cgctttacct tcatctaaaa gctttttaac atattcttta taaagatcaa
     5821 aacgctctga ttggtaagtt acttctccat catgttctaa accgcaccat ttaaaagctt
     5881 cgataattgc tttagtagct tctttggaat ttctttttaa atccgtatct tcgatacgaa
     5941 gtaaaaaatt tccaccattt tttctagcgt ataaataatt ataaagagct gttctaagtc
     6001 cacctatgtg caaataccct gttgggcttg gagcaaaacg cgttgtaagt ttttcgtgca
     6061 ttttttgcct tttcttaaat ttttattgat ataatgcgat atttatactt aaataaaggt
     6121 ttgaaatgaa aaaaatttta ttaagttttg cattttttgc aagtttagct agtgcaaata
     6181 ccattaatgc tatagccgta gttgtagata aagagcctat cacaacttat gatatagatc
     6241 aaactatgaa agcacttaaa attgatagaa ataaagcttt aggcgtactc atcaatgaaa
     6301 aaatggaaat ttcacaaatg aaacaactag gtattgtagt caatgatcta gagcttgatg
     6361 atgctataaa taaaatgctt actcaaaaca aaacgacttt aaatgctttc aaagcaaatt
     6421 taaaatccaa aaatcaaagc tatgaacaat ttcgtgcaaa ttttaaaaaa gatttagaaa
     6481 aaagaaagct ttatgaaaaa atcgcaagta tggcaaaaac tgattttagt gatgatggag
     6541 caaaaaaatt tttcgaacaa aataaagata aattcacttt ttatacacaa attaatgcaa
     6601 atatttatct atcaaacaat cctcaaactt tagaaaatat caaaaataca aaaaaaacaa
     6661 tccttaaacc acaaaatgca tctttaaaca caagtaatgc cgatccaaga cttttagggc
     6721 ttttatcaca aattcctgtt ggaggctttt cccctgtttt aaatggaaaa aatggctatg
     6781 aactctatga agttaaaagc aaagatgggg cacaaactcc tgaatatgaa caagttaaaa
     6841 atgaagtttt aaacgcttat gtaagcgaac aaagacaaaa tttcatacag gattattttg
     6901 ataaactccg ctctaaaatc aatatagaat atttaagata aaaattacaa ttaaaatttc
     6961 cctttaatag ggaaatttta atgtcttgca agataatttg tatcgtaatt attattaata
     7021 aaatcaggat tttccatcat agaaagatga aaatctttgg ttgtttttat cccacttata
     7081 agcaactcat ctaaagctac tttcattttt gcaatagctt tattacgatc ttctgcccaa
     7141 actacaagtt tgcctatcat agaatcataa taaggaggca cgctatagtc ttgataacaa
     7201 tgactttcca ttctgacatt gcgtcctgcg ggtggaatgt atttagtaat cttacctgga
     7261 cttggcaaga aagttttgga atcttcggct gtgattctac attctataga atgcccattt
     7321 aatttaatac tttcttgaga tggtaaagca taaccttctg ctactttaat catttgttct
     7381 atgatatcaa tcccacttac catttcactt acacagtgtt caacttgcaa acgcgtattc
     7441 atttctataa aataaaaatc caaattttta tctaccaaaa actcaaaagt tcccgcacct
     7501 tcatatccta tagctttagc tgccttaata gcagtttcat gaagtctagt gcgtgttttt
     7561 tcatcaagca aaatcgcagg ggattcttct ataagttttt gatggcgtct ttgcatagaa
     7621 caatctcttt cgcccacatg aatcacattg ccaaaactat ctcctataac ctgtacttct
     7681 atatggcgtg gattttgtat gtatttttcc atatacatag ttccatcgcc aaatgctgtc
     7741 atagcctcgc tttcagccga ccaatacgct ttttcaagat ctttttcatt ttcaaccaca
     7801 cgcataccac gaccaccacc acctgcagct gcttttaaaa tcacaggata acctatttct
     7861 ttggcaagtt ttttagctgc ttcagctcct gccaaagccc catcgcttcc tgggatcaca
     7921 ggtacgcctg ctctttgcat gacttgtttt gcttttgatt tatcactcat taaattcata
     7981 gcttccacag aaggacctat aaatttgatg ttatgtttag cacaaatttc aacaaaattt
     8041 tgattttcac ttaaaaatcc gtatcctgga aaaatcgcat ctgcttcagc aatttcagct
     8101 gctgtaataa tggctgggat atttaaatag ctttcagaac ttcttgcttt gcctatacaa
     8161 atgcttgcat cagcgtattt taaatacaaa gcatctttat ctgcttcaga gtacacacaa
     8221 attgcttttt tgcccatttc tttaatcgtt cttaaagcac gcagtgctat ttctccacga
     8281 ttagcaatta atatgctttt aatttccatt ttataatttc tccaccgcaa ataaaggcat
     8341 tccaaattct acaggctgac catcagcaac taaaatttca gcgatcctac aatcaaattc
     8401 cgcttcaatt tcattcatga ttttcatcgc ttcgataata gctatagtat cgcctttttt
     8461 aaccgtacta cctactttta caaaaggtgc tgcacctgga cttggagctt gatagaaagt
     8521 tcctaccata gggctattta tacttggttt gtttgatttt acactttgac taggttgagc
     8581 ttcgtttaca acgcttacat tgataggttg tggagctgga actggaggac aaacaggagc
     8641 tggaacatcg cagcacatat ctctttcaag ttctatttca aaaccatctt gttctttgat
     8701 cttaatttta ctaatatttg cttcagcaaa aaggtttact aactctttaa tttcttcttt
     8761 tgtcataaaa ttctcctaca aaatttaaga acttaacctt gtattatata aaaaaacttg
     8821 aaatttaact ttaaaaaaga aaaaaatcat aaaaaatata gattttttag gttataatcc
     8881 ttacaaacaa ttacaaatat taaaaggtta aaaatgggct taaaagcgga taattggata
     8941 agaaaaatgg cattagaaca caagatgatc gaaccatttt gcgaagcaaa tataggaaaa
     9001 ggtgtggtaa gctatggact ttcaagctat ggttatgata tacgcgtagg acgtgagttt
     9061 aaaattttta ccaatgttaa ttcaactgta gtggatccaa aaaatttcgt agaagaaaat
     9121 gtagtagatt ttgaaggtga tgtatgtata gttcctgcaa attcttttgc cctagctaga
     9181 actatagagt attttaaaat gcctgatgat gtcttagcta tttgtcttgg caaaagcact
     9241 tatgcaagat gtggtatcat cgtcaatgtt accccttttg aaccaggttt tgaaggacat
     9301 attactatag aaatttcaaa tactacgcct ttacctgcaa aaatttatgc taatgaaggc
     9361 atagcacaag tgttgttttt acaaggtgat gaaaaatgtg acaccactta taaagataaa
     9421 aaaggcaagt atcaagctca aacgggcata accttgccaa gaattttaaa ataggaacac
     9481 ttgttgcttt aattttaaaa aacttaagca aaggaaggca aaatgtttaa cggaaaaaat
     9541 atcttaatca cgggcggaac aggctctttt ggaaaaacct atactaaggt tttgctagaa
     9601 aattataaac ctaataaaat catcatttat tctcgtgatg agctcaaaca atttgaaatg
     9661 gcaagcgttt ttaatgctcc ttgtatgcgt tatttcatag gagatgtaag agataaagag
     9721 cgtttaagtg ctgctatgcg tgatgtggat tttgttatac atgctgctgc aatgaagcat
     9781 gtgcctattg ctgaatataa ccctatggaa tgtataaaaa caaacataca cggtgcgcaa
     9841 aatgtcatcg acgcttgttt tgaaaatggg gttaaaaaat gtatcgctct tagtacggat
     9901 aaggcttgta atcctgtaaa tttatacggt gcaaccaaac ttgcaagcga taagcttttt
     9961 gtcgctgcaa acaacatagc aggtaacaag caaacacgct ttggtgttac aagatatggc
    10021 aatgttgtag gttcaagagg ttcagtggtg cctttcttta aaaaactcat cagcgaagga
    10081 gctaaagaac ttcctatcac cgatacgaga atgactcgtt tttggatcag ccttgaagat
    10141 ggagtaaaat ttgtactgag taattttgaa agaatgcatg gaggagaaat ctttatccct
    10201 aaaattcctt cgatgaaaat caccgatcta gcccatgctc tagctcctaa tttaagccat
    10261 aaaatcatag gcataagagc aggagaaaaa ctacatgaaa tcatgatttc aagcgatgat
    10321 agccatttaa cctatgaatt tgaaaactac tatgctataa gcccgagtat taaatttgta
    10381 gataaagata atgactttag tatcaatgcc ctaggcgaaa aagggcaaaa ggtaaaagat
    10441 ggtttttctt atagctcgga taataatcct ttatgggcaa gcgaaaaaga acttttagaa
    10501 atcatcaatc acaccgaggg tttttaaaat gcttacttat tctcatcaaa acatcgatca
    10561 aagcgatata gatacgctta caaaagcttt aaaagatgaa attttaactg gaggtaaaaa
    10621 ggtagatgaa tttgaagaag ccctttgcga atatgtgggc gtaaaacacg cttgtgtatt
    10681 aaactcagct acttcagctc ttcatcttgc ctacacagca ctaggtgtcc aagaaaaaat
    10741 cgttttaacc actcctttaa ccttcgctgc tacggctaat gcagccttaa tagctggagc
    10801 taaggtagag tttatcgaca ttaaaaacga tggcaatatt gacgaaaaaa aactagaagc
    10861 aagactttta aaagatagta aaaatatagg agctattagc gtggtggatt ttgggggaaa
    10921 tagcgttgaa atagatgaaa tttcaagcct tgctaaaaaa tacaatatcc ctttaatcga
    10981 tgatgcaagc catgctttag gtgccttata taaaagtgaa aaagtaggaa aaaaagccga
    11041 tctttctatc ttttcttttc atcctgttaa acccatcact acttttgaag gcggggctgt
    11101 ggtgagtgat aataaagagc ttatcaccaa aatcaagctt ttaagaagcc atggtatcat
    11161 taaaaaaagg ctttgggata gcgatatgat agaacttggc tataattacc gcttaagcga
    11221 tgttgcttgt gctttaggga taaaccagct taaaaaactc gatcacaatc ttgaaaaaag
    11281 agaagaaatt gcaagttttt acgataaaga atttgaaaaa aatccttatt tttccacgat
    11341 aaaaatcaaa aattataaaa aaagctcaag acatttatac cctatcttgc tttttcctga
    11401 attttattgt caaaaagaag aactttttga aagcttgctt catgcaggag ttggtgtaca
    11461 ggtgcattac aaacctactt atgagtttag tttttataaa aaactcttag gagaaataaa
    11521 actccgaaat gcggataatt tttacaaagc cgagcttagc ataccttgtc atcaagaaat
    11581 gaatctaaaa gatgcaaaat ttgtaaaaga tactttattt agcattcttg aaaaagttaa
    11641 aaagggatat tgtgaataag ctagacttta gaagccaaga ttttagccaa actggaaagg
    11701 ctatgtaata aactagcttg cgaacttttt cctatcccta gaagcatcac agggcaaggt
    11761 tttagagata gcttagaaat tttaaataaa actctgggcg ggggggggat actcaaattt
    11821 cactctataa aaagtggcac aaaggttttt gactggatag tccctgatga atggaatgtt
    11881 aaagaagcct atatcatcac ctcagaagga gaaaaaattt gtgattttaa aaagcataat
    11941 ttacaccttc taaattatag cgaagctatc gataaagaaa tcgaacttga ataacttcaa
    12001 aatcatcttt actccataga agaaatgccc gatgctattc cttatgtaac gagttattac
    12061 aaaagacgtt ggggattttg tctcacgcat aatgaaagaa aaaaactcaa aaaaggcaaa
    12121 tacaaagtct atatcaatgc gaaacatgat gaaaatgggg ttttggatta tgctgatttt
    12181 atcctaccta gtacgcaaaa ttcaaaagat gaaattttaa tttcaaccta tctttgtcat
    12241 ccttccatgg caaataatga gcttagtggt cctgtggtgg ctattttcct agcaaaatgg
    12301 cttttgagtt taaaagaaag aaggtataat taccgctttg tcatcattcc tgaaaccata
    12361 ggctctatag tctatcttag caaacattta gagcatttaa aaaaacatgt taaagcaggc
    12421 tttgtgcttt cttgcttagg cgatgatcat gcttactcac tcatacacac acccaaaaaa
    12481 acactctaag tgataaagtt gccttgcata cgcttaaaaa taaaaaaaat ttcaaagctt
    12541 ttagtttttt agatcgtgga agcgatgaaa gacaatacaa tgctccgctt gtaaatcttg
    12601 gcattgtagg agtatgtcgc acaagatacc tagaatacga acaataccac accagcaaag
    12661 atgatctcaa ttttatctct gaaaaaggtt taatgggtgg acttcaaagc atacaagaaa
    12721 tgattttaaa tctagaaatc aacgctgtat atgaaaacac catagtatgc gaacccaatc
    12781 ttggcaaaag aggactatat cataccctta gcactgccaa tgacattcct ttagcttgta
    12841 attttctagc ttactgtgat ggagagaatg atatcatcga tatagccaat atcttaaata
    12901 tgcaagctta tgaatttaaa gaacttttga aaaaaataaa attttatgga ctagtaaaat
    12961 gaaatatttt ttagaacaca atgacaaaaa atactccgat aaggatttaa tagatgcttt
    13021 ttatcaacta ggtataaaaa gaggcgatat tttatgtgta catacagaac tttttaaatt
    13081 tggcatacct ttgctttcta gaaatgaatt tttacagact atactcaatt gtttttttga
    13141 agttataggt caggaaggca ctttgatcat gccaaccttt acttatagtt tttgcaaaaa
    13201 tgaagtttat gacaaaataa attccaaaac aaaaatggga gcattaaata aatattttcg
    13261 caaacaaaca ggagtaaaac gcacaaacga tcctatattt tcttttgcta taaaaggagc
    13321 aaaagaagaa ttatttttaa aagatacaac aagttgtttt ggggaaaatt gtgtttatga
    13381 agttttagcc aaagagaatg gaaaatatat aatttttggt ttaaatgaag ggcacgctct
    13441 agttcattac gcagaagaaa aaaatacaac tttttgtaga tattttaaaa attttaaagg
    13501 tattttaata aacgaaaaaa ggaaagaaaa aacaataact attgactact acgttagaga
    13561 tttgcaacag tcttatttat gcgatattaa taaaattaat cctataattc aagaaacgca
    13621 aaattataaa aaaataaatt ttgctaaaaa ttttatagaa atttataata ctagagaata
    13681 tgttcaagca atatgtcaag ccttaaccaa tgataaatta gccatatata agaaagatcg
    13741 ataatgaaac aattttatga aattttagaa aatatacttg aaaccaaagt agatgaaaat
    13801 acaaatttaa gcatggaaaa ctgcaagaac tggacttctt tagctcatat tgatatcatc
    13861 atgagtttag aagaagaatt tgaaatcaaa tttagcaaag atgaattaag tcagctaaaa
    13921 tctcaaaatg aacttttaaa agctattaag gagaaattat gttaaaaaaa ctaaaaaact
    13981 atttaaactc atagaagaaa aaaatgcttt gcataaaaaa tgtttagatg gattgcaact
    14041 ttcagatgaa gaatataatg atttagaaaa acttatcatc tattataaag atacattaaa
    14101 catcaatcta gaagaacaag ctaaaagtta tatagttgta ctcaatgaca ctctagaaga
    14161 aactaaatat tttatagaat ttggaaaata tagatatagc actttagcag aagtaaaaaa
    14221 tatggtatat ttcaatgaaa attatatgaa gcaatacatg gtgggacttg ctatatcttc
    14281 ttttatttgg aatgctcata ttgaagttag aagatatttt gctaaatata tagataaaaa
    14341 acaagatcga aaaagcactt atcttgaaat cggtcctggt catggagaat tttttgttaa
    14401 agcactaaga agtcaaaaaa tttatagaat attatggaat agatatttct cctataagtt
    14461 gtcaaatgag caaagatatg gtagaaaatc aatttggagc aattaatcaa aataatttta
    14521 aatgtgattt tatatgtaaa gatttcacta aatgcaattt caacaataaa gcagatttag
    14581 ttgtaatggg agaagtcttg gagcacgtag aacaaccttt acagtttatg aaagatgtaa
    14641 aaactttact gaatgatggt ggagaaattt ttgcaaccat ccctatcaac gctcctgcta
    14701 ttgaccatat ttatttattt tcccatcctg atgaagttaa agatttgctt aaaaatgcag
    14761 gtttaaaaat caaagaatgc gaatatttta tggcaaataa ttattcttta gaaaaagcat
    14821 taaaaacaaa aaatgccatt gttatggcag tggttttgga aaaataatga atcttttttc
    14881 acctcattta aaacgcaatg agcttataaa atttgccaaa gaattagact ttagtaaaag
    14941 tcaagatctt cttattaata tccatagaaa tcatactttt gaaggagtgc aaagcatcat
    15001 tgctcctttt ttacattttg ctaatttaag agctgagttt aatttcagct cttatgatga
    15061 tagcttgagt tttgataact ttaaataagc tagtttagaa cttttatggc tagatttaac
    15121 ccgctataaa aataatgtgc aaaattttat agaagaaaga cttttagaac taagaaaaat
    15181 ttcacaaaac cctattttag ttcttagttt aggagaattt aaaacagata aaaaaatttt
    15241 aaattgtgaa atttttaaca tagaaaaact cataaaagag tattttgatg aagaagatat
    15301 tttagactta gctaaagaag aacttacagg ctctaagctt aataataaag ccttgatttt
    15361 cttggcacaa attttaggac ttagtctcat ccctgcactt gtaaaacccg ctcttaaagc
    15421 tcttgtactt gatcttgata ataccttgta tcaaggaatt ttaggtgaag agggtataga
    15481 taatcttaat ttaagtcctt tgcacaaaac cttacaagaa aaaattaaaa cttttaaaaa
    15541 acaagggttt ttacttgccc tagcttcaaa aaatgaagaa aaagacgcaa aaaaactttt
    15601 tgaaataagg aaagatttca tcttacaatg ggatgatttt gatgctagaa tgatcaattg
    15661 ggagccaaaa ggtgaaaata tcttaaaaat tgctaaaaaa tttaatataa atactaacgc
    15721 tatgcttttt atagatgata atatcgccga gcttgaaaat accaaaatta caggcgttaa
    15781 aacactttta tgcgatgaaa atatacttta taaaatcaaa ctttttccta atcttttaaa
    15841 actttcaaat taccaaagaa gatcaaattc gtgccaaaga tatagcagcc aatgctttaa
    15901 gagaagagct taaaagctta agcgatgaag aatattttca aaatcttgaa atcagcttaa
    15961 attttagcaa aaatgatctg caaaatatcc ctcgcattag cgaactttta ggcaaaacca
    16021 atcaatttat cgctaattac acacgcttaa atcaagaaaa agtcgcacaa cacatgcaaa
    16081 aagaactcat tgtaagtgtg agcatgagtg ataaattaag cgatagtggg attatcgcta
    16141 tttttgtttt ttcttgcaaa gaaggaaatt tatttatcga tgatctttgc atttcttgta
    16201 gggctttagg tagaaaactt gaaactagaa tgttttttaa agcctttgaa ctagctttac
    16261 atttctttga tcttaaaaac aataatgcaa ggctttacta tcaaaaaggc gaaagaaata
    16321 tgccattttt aagcttttta gaacaaattt ctaaagaaat tgaaaaaaac tcagcccttg
    16381 tttcatttca aaatttaaac tttaaaggac ttataatcca tgaaaactag atttgataaa
    16441 gccaaaattt caggcatttg cgtaagcgta cctgaacata aaatttgcat tgatgatgag
    16501 ttagaaagcg ttttttcaaa tgatattaaa acccttaaaa gaatgaaaaa agtcataggc
    16561 ttaaacacgc gttatatttg tgatgaaaac acttgtgtaa gcgatcttgg caaacacgca
    16621 gccaatacac ttttacaagg tttaaatata gataaaaata gccttgacgc actcattgta
    16681 gtaactcaaa gtcctaattt tttcatgcct tctacggctt gttatttaca ccaactttta
    16741 aatttaagcc ctaaaaccat agcttttgat ttaggacaag cttgtgcagg gtatttatac
    16801 ggcttatttg tcgctcattc tttaatacaa agtggcttag gtaaaatttt gctcgtttgt
    16861 ggggatactt taagcaaatt catccatcct aaaaatatga atttagctcc aatttttggc
    16921 gatggagtaa gtgcaacttt gattgaaaaa acggatttta atgaaacctt ttttgaactt
    16981 ggaagcgatg gaagacattt tgataaactc atcattccaa aaggtgcgat gagaatacct
    17041 aaagcagata tttttaacga tgattcgctc atgcaaactg aggagtttag acaattagaa
    17101 aatctttata tggacggagc aaatattttt aatatggctt tagaatgcga acctaaaagc
    17161 tttaaagaaa ttttagaatt ttctaaagta gatgaaaaag acattgcttt tcatcttttt
    17221 catcaatcta atgcgtattt ggttgattgt attaaagaag agttaaaact taatgatgat
    17281 aaagttccta atttcatcat ggaaaaatac gctaatttaa gcgcttgttc actacctgcc
    17341 ctactttgtg aactagatac tccaaaagaa tttaaagcga gtttgagtgc ttttggtaca
    17401 gggcttagct ggggaagtgc cgtgctaaat ttcaaggatt tatacacaaa agatatttta
    17461 atttacacaa aggagaaata atgacaaaaa ctgaattttt agaagagctt aaagaagcta
    17521 tgcatagaga tgaagactta aatgaagata tgctacttga tgatatagac gagtgggata
    17581 gtttggcttt tgtatctgtg atggtgcttt ataaaaatct ttttgcttta aaaatcacag
    17641 ccgaggactt gaaaaattgt caaaaagtaa gtgatttaat caatttagca aagcttgatt
    17701 aaaaccttta aggttttaat cttttatcgt taattcaaat ttatctccca catctttaaa
    17761 cataaacact ttatttccac aaggataaga gatggaattt tcttgcatga aagattttct
    17821 tttttgcaat ttttcaagca ttaaaggaag ttcttttcta aataaggctt tatcaggtat
    17881 accacaacca tgatctaaat ttttaataaa ttttccatca attttatttt catctatcaa
    17941 atttaagctt acatcgtaac ctaaaatttt taatatttgc atggtttgtt gtttaaaatt
    18001 ggcaggcgtt agaggatctt tatcgctatg ataactcaca taaataatat ttttattttt
    18061 ttgactttgt aaaattaaat gatctttatt taacaatgtt ctaataaaat aattttcatt
    18121 attaaaaaaa taaggtgaat tttctttacg cgtccagtgg gtttttagaa aacaactcac
    18181 aaaaaaatga tcgccctgca tatacatatc cccattagta tctttgcttt taaattccaa
    18241 ctctctacca ataatataat taagcggtgg aacagccgaa cccgaattat caatcacacc
    18301 atccacatac caaggagcta tctttgctat gagcaaggct aagtatcctc cataagaccc
    18361 ccccccataa atttttggta aatctgcaag ttttggaaag cgtttaacta gatcttttaa
    18421 agcattgata tgatcaatag ctgccataat gccaaaattt tgatattctc cacgcgaagg
    18481 aataaaagtt gcacttagtc tttcttcaaa atcataaggc aatcgattta acatttttat
    18541 tctgtcataa tctcgctcaa atattcacaa tgactaacta cagtattatt ggctaattga
    18601 tcacatggaa tattgtattt acgaagcact ttttctatta attttaaatc atcttttgta
    18661 aaatctgcta atgttgaata cttttcaaca tccgaacgcc tttgacaaaa acaatgataa
    18721 aaaacatgca ctgctacaac atcaaaattt ttagcaatat aatttctata agagtctaaa
    18781 aaatatatat ttgcattggc tccataacct cctattataa aaactatagc tttaatctct
    18841 ttttcatcat cataacttat acggtattca a
//
LOCUS       DARGEY010000017        18842 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.017, whole genome shotgun sequence.
ACCESSION   DARGEY010000017 DARGEY010000000
VERSION     DARGEY010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18842
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.017"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..722)
                     /locus_tag="SF008_000562"
     CDS             complement(<1..722)
                     /locus_tag="SF008_000562"
                     /inference="COORDINATES: protein motif:HMM:TIGR01444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HEG8232859.1"
                     /translation="MNSNDIVLLKCGEVSYKIYLPNRNIDYIQKKIYNELIPYEYEML
                     QDFLKKAKKNTIIVDIGANIGNHSLYLAAHGFDVCAFEANQTLCDIFKISIKLNGFKN
                     LKLYEFGLSDKKEMAVLDNLNPENLGGQSLKIEDFGNIFLHPLDDIKFEKDISIIKID
                     VEGMETKVLNGAINTIKKYRPLLYIEAINSIEFKRINVILEKLDYVYWNTFNATPTHL
                     YYPKERLEYKDILSNVSYHNAL"
     gene            complement(742..1965)
                     /gene="wecC"
                     /locus_tag="SF008_000563"
     CDS             complement(742..1965)
                     /gene="wecC"
                     /locus_tag="SF008_000563"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002952841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HEG8232860.1"
                     /translation="MNQFNKVCVIGLGYIGLPTAAIFASRKIKVIGVDINQNIVDIIN
                     KGKIHIVEPGLDILVHMVVNDGYLKATTLPEEADAFIIAVPTPFKGDNHEPNLDYIEM
                     ASKAIAKVLKKGNLVILESTSPVGTTEQMAKWLAEERSDLSFPHQCGEVSDIKIAHCP
                     ERVLPGQVIRELVENDRIIGGMTQKCAEYAIRLYKIFVQGECIMTNARTAEMTKLTEN
                     SFRDLNIAFANELSILCDKLDINVWELIKLANRHPRVNILQPGCGVGGHCIAVDPWFI
                     VYQNPNEAKIIKTAREVNDNKPNFVVQKIKKKIKDILGPKIACLGLAFKPDIDDLRES
                     PALDIVIKLASENASQILVVEPNIKQLPLKLQNKRNIKLVCLSQALDEADVVAVLVRH
                     KEFIEVQSDKVVSFC"
     gene            complement(1952..3100)
                     /gene="wecB"
                     /locus_tag="SF008_000564"
     CDS             complement(1952..3100)
                     /gene="wecB"
                     /locus_tag="SF008_000564"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018060478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HEG8232861.1"
                     /translation="MKKILIVFGTRPEAIKMAPLVKIMENRNDVNFRVCVTGQHRQML
                     DQILNIFDIKPDYDLNIMQENQDLYDITLKILCGMKNVLNDFKPNIVLVHGDTTTASV
                     TALAAFYQKIKIAHVEAGLRTYNICNPWPEEANRQIIGVLANIHFTPTVKSAENLIKE
                     GKNKEGIFITGNTVIDALFYMTEKIKNDKTFKIKVLSSIGNEYKINDNKKFILVTGHR
                     RENFGEGFLQICEALKIIAINNPDIDIVYPVHLNPNVQKPVKMLLLNISNIYLINPLK
                     YEEFIYLMSKSYFIITDSGGIQEEAPSLGKPILVMRETTERPEAVEAGVVKLVGACKQ
                     NIIRESQKLIDDQDEYEKMSKAYNPYGDGRACEKIINILIKGKNNESI"
     gene            complement(3155..4102)
                     /locus_tag="SF008_000565"
     CDS             complement(3155..4102)
                     /locus_tag="SF008_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HEG8232862.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLAKNLDENFNQAVNLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTSEDVLIAISNSGETEE
                     ILKIIPAIKKRKIPLIVMCGKKNSTLVKQSDIFLNIAVEKEACPLQLAPMSSTTATLV
                     MGDALAAALMKVRNFKPDDFALFHPGGSLGRKLLTKVKDLMVSSNLPIVHPDTEFNDL
                     VDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKASDKPRFDFKAKEIMSTNPKVVDA
                     DAMASKAEEIMLKYKIKEIVVSKENKVVGIIQFYAIGEI"
     gene            complement(4112..5770)
                     /locus_tag="SF008_000566"
     CDS             complement(4112..5770)
                     /locus_tag="SF008_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HEG8232863.1"
                     /translation="MKKILILLFSCILCFGAVDVSQIISAEDQGSTTTSIDQNLSSNY
                     DIANKENNLTKIHQILVFGAHLFNGNFKNYNQRVYNPDYKMAVGDQISLKIWGAVEFS
                     QVLVVDSQGNIFIPKVGAVNLLGVKNSALVSVIKARVNKIYKSNVFVYADMNAYQNVS
                     VFVTGSVNAPGLYQGLSSDSVIQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVNGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVSAYNKMQFSKVLLRTGDEVEFHPEYVSENITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKANPQSNMQALQVFRKSVARTQKELINAQLKELETLALT
                     SGSVTAQGAAIRAQQAKTILEFIQRAKQVEPKGQIVIDNPKSYNSVILEDGDTINVPS
                     KNNLIIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     GIDMKPGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            complement(5772..6890)
                     /locus_tag="SF008_000567"
     CDS             complement(5772..6890)
                     /locus_tag="SF008_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HEG8232864.1"
                     /translation="MEENKTLLEKIKDLSIFDSFKIIWFIMIFVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQTNGILSLLGSTSTASEDLNYLKGYIESSDMLKILDGKIKLKSL
                     YQEQHIDLPFKIWDSSSIESYLKYYQARVKVHTDETTKLLQVEVEGFTPKSAHLIAQT
                     IMQESEKFINEISHKAAREQMAFAENEVQKYKERYQKAQNDLIAFQNKYGVFDPLKQA
                     EAKASLVAQIETNLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIEATFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIVKFIKMIIEEHKY"
     gene            complement(6890..7552)
                     /locus_tag="SF008_000568"
     CDS             complement(6890..7552)
                     /locus_tag="SF008_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8232865.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGYNGAG
                     KSTLMRLLSGAELPDSGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGKE
                     LQEKVKFVEDFAEIGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHNVAEIKEWCDKIIYMKNGQITVYDDVDEGIAVYQG
                     KA"
     gene            complement(7549..8331)
                     /gene="kpsM"
                     /locus_tag="SF008_000569"
     CDS             complement(7549..8331)
                     /gene="kpsM"
                     /locus_tag="SF008_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide transporter KpsM"
                     /protein_id="HEG8232866.1"
                     /translation="MLNVIHALFFRELKTRFGKNRYLGYIWVVGEPMSVVLLVTIIGT
                     VIREYHHQVMPEGISIFMFLISGVMPFFMFRSIVTQLMNGIGANLSLFAYKPVKPIHV
                     FIARTLLEFCIYFVIFITVLFFAGWFFRLDVFPVHLLGVLFCIFLLICSAFALGICFA
                     IVWHFVEPLRTLLAYFSIVFYWSSGIIFPTWLTPRPLLDIFYYNPLLHIMELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFIYYYNRQALTAAKKE"
     gene            complement(8403..8810)
                     /locus_tag="SF008_000570"
     CDS             complement(8403..8810)
                     /locus_tag="SF008_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232867.1"
                     /translation="MDERILEFIKNEQLLSWAMIDEKGVYTASAFYAFDEKNLAFIIA
                     SHEDTKHIRLASENSSIALNIAKESKIAFLKGVQAKAEFKMASKEQMKIYFSKFPFAK
                     LDKSAKIYALELFWLKFTNNALGLSKKLEFCKK"
     gene            8885..9448
                     /gene="ciaI"
                     /locus_tag="SF008_000571"
     CDS             8885..9448
                     /gene="ciaI"
                     /locus_tag="SF008_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HEG8232868.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSVSYANNEEGKTL
                     NLKHQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDENHQNAIMNNFTNKLSDLLKQNQTDDKDINASMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            9485..10174
                     /gene="dut"
                     /locus_tag="SF008_000572"
     CDS             9485..10174
                     /gene="dut"
                     /locus_tag="SF008_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HEG8232869.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFTWKHWKNISSPTNWENVRIEIVDIWHFILSLLLEEYRDKNNKDFKAIA
                     TEVNAVSVFQDFCKEEEYPNEGDIYSILNDIELIIHKCSGFGFNLEELLSIYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNNGYKDGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEECYKKA"
     gene            10176..10889
                     /locus_tag="SF008_000573"
     CDS             10176..10889
                     /locus_tag="SF008_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HEG8232870.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLILMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYALHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINQKYYHYDNTNEVSTLKTIFEIFKIFIKFIGILLLCTLALFLPFINIFVYYLAF
                     YYLFHKLLMIDVTSTILDKESFKNFHSDFSPLEFKFSTLCFYLLSSVPLLGLFLQVFF
                     VIFLTHLGYQRILKLKAKA"
     gene            complement(10872..11837)
                     /gene="tilS"
                     /locus_tag="SF008_000574"
     CDS             complement(10872..11837)
                     /gene="tilS"
                     /locus_tag="SF008_000574"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEG8232871.1"
                     /translation="MQIKNEILSLLKRGKNLLAFSYGSDSSALFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKQAPKFQSNFEKKARDFRYDFFEKICLEQ
                     DYDYLILAHHLNDQFEWFLMQLSRGAGLAEILGMQEYEKRSNYTLLRPLLFISKDEIS
                     SFLKEKDIFYFHDESNENEKYFRNYIRKNFSNAFVSKFHQGLKRSFSYLGEDRKKLYD
                     FENIKEIQGLLICPKNESLIARAVKMKGLLLSTAQRKEFLKGDCVLGGKIALVYKNEQ
                     AIVFEYETCQKLPKNFKEECRIAKIPRLLRAYLYNHKIDISSLSF"
     gene            complement(11827..13146)
                     /gene="rimO"
                     /locus_tag="SF008_000575"
     CDS             complement(11827..13146)
                     /gene="rimO"
                     /locus_tag="SF008_000575"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HEG8232872.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGRLSAYELCDEPNKADVLIVNT
                     CGFIDSAKKESINVILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQSENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIVAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGI
                     RAARILYFYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCAFVKDFGFDRVSVFAYSKEEDTAAFD
                     MEQVPFKVINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            13219..14316
                     /gene="prfB"
                     /locus_tag="SF008_000576"
     CDS             13219..14316
                     /gene="prfB"
                     /locus_tag="SF008_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEG8232873.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASMLYRMYLRFCEREGF
                     KVETLDFQEGEETGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKAE"
     gene            complement(14477..14791)
                     /locus_tag="SF008_000577"
     CDS             complement(14477..14791)
                     /locus_tag="SF008_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232874.1"
                     /translation="MKKILTSALALGAMTLIVDCGDGDLVELKNNGNDQAMFDLGNQE
                     IMKKYPNYKLYDYTSVRTISDINNPEGKIKEMKRDLEIDKTPYSNYVFLLNPNDKKTI
                     KL"
     gene            complement(14913..16031)
                     /gene="truD"
                     /locus_tag="SF008_000578"
     CDS             complement(14913..16031)
                     /gene="truD"
                     /locus_tag="SF008_000578"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HEG8232875.1"
                     /translation="MNLAEENTIFKPLYSLKHSPINAYFSKNSDDFVVREKPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHSKLKILEIFTHENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQG
                     FANYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     GRFKARDISAMGLLIGAKAYETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEE
                     LKWRYDEEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(16000..16821)
                     /locus_tag="SF008_000579"
     CDS             complement(16000..16821)
                     /locus_tag="SF008_000579"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEG8232876.1"
                     /translation="MNKEDFIIKAFLNEKNGDDGAIIDDWCFSKDLFFENVHFKREWF
                     SLEQIATKAMLVNISDAISMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GTLKPNHVFIKPKLRASFFYEVAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYTLYSGEEYEILFAFDEKERQNIETIAKKHGVKLNIFGKAVKGKYEFSGREHHF"
     gene            16908..17981
                     /locus_tag="SF008_000580"
     CDS             16908..17981
                     /locus_tag="SF008_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HEG8232877.1"
                     /translation="MKKLELRIFRFDKTKDYEAYYKPYIYDNYENFASFYDLLLQVQD
                     DDIYFDFDKDEDTYIVVNKQIIPLFTPLEKIAKEFDFSLCIEPLSTKRAIKDLIIDKN
                     DFLDKYKYLEKFGDEEDKKLYAKYDYLYYASEILDYLPEYIGDGVFYLASKMIEKYPE
                     KKIEILKTLADKEKGIFYHLESKNEILETTIKNLQNEILNLGLFDKNILHFDLPKTNA
                     FDNEIKELKEIKHNFKDFNIAFYGFNACDTLKSKLKAKFISYENSIKNNGFSLLNLNP
                     TLSYKIAADIVLDAYDSGADFMVVKEEKDFYLFDTCAKKLMQTSGREFEDFYILSRFE
                     FLALIEGIQAPSLKNHTLKVSLI"
     gene            17978..18361
                     /locus_tag="SF008_000581"
     CDS             17978..18361
                     /locus_tag="SF008_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEG8232878.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIHTAKP
                     LFIISKNSPFLSIPFSKEALFESLNEFDNALKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            18354..>18842
                     /locus_tag="SF008_000582"
     CDS             18354..>18842
                     /locus_tag="SF008_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmD family RNA methyltransferase"
                     /protein_id="HEG8232879.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPPKEKTKKTKETKLYT
                     NIESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALMAAEA
                     LSNHALKAYAIELDAKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPP"
BASE COUNT         6565 a         3251 c         2382 g         6644 t
ORIGIN      
        1 tccaaagcat tgtgataaga aacattggat aatatatctt tatattctaa tcgttcttta
       61 ggatagtata aatgtgtcgg cgtagcatta aaagtattcc aataaacata atctaacttt
      121 tctaatataa cattaattct tttaaattct atactgttga tagcttctat atataacaat
      181 ggtctatatt tttttatagt atttattgcc ccatttaaaa ccttagtttc catcccttct
      241 acatctattt ttattataga aatatctttt tcaaatttta tatcatcgag aggatgtaaa
      301 aaaatattac caaaatcttc aatttttaaa gattgtcctc ctaaattttc aggatttaaa
      361 ttatctaaaa ctgccatttc ttttttgtct gataatccaa attcatataa ttttaaattt
      421 ttaaatccat ttaactttat acttatttta aatatatcac aaagtgtttg attagcctca
      481 aaagcacata catcaaagcc atgtgctgca agatataaag aatgatttcc tatatttgct
      541 ccaatatcaa ctataatagt attctttttc gcctttttta aaaaatcttg aagcatttca
      601 tattcataag gaattaactc attgtaaatc tttttttgta tataatcgat atttctattt
      661 ggaagataga tcttatagct tacttctcca cactttaata aaacaatatc attagaattc
      721 ataacataat ccccttagtt attaacaaaa acttacaact ttatcggatt gcacttcgat
      781 aaattcttta tgtcttacta gtactgcaac aacatctgct tcatcaagtg cttgacttag
      841 acaaactaat tttatatttc ttttattttg taattttaat ggtagttgtt ttatatttgg
      901 ctcaacaacc aatatttgac tagcattttc acttgcaagt tttataacta tatctaaagc
      961 aggagattct cttaagtcat caatatctgg tttaaatgcc aatcctaaac aagcgatctt
     1021 aggccctaat atatctttaa tttttttctt tattttttgc acaacgaaat ttggtttatt
     1081 gtcattgact tctctagccg ttttaataat cttggcttca tttggatttt gatatacaat
     1141 aaaccatgga tccactgcta tacaatgtcc tccgactcca caacccggtt gcaaaatatt
     1201 aactctagga tgacgattag caagttttat aagttcccat acatttatat ctaatttatc
     1261 acataaaata gataattcat tagcaaatgc tatatttaaa tctctaaatg aattttcagt
     1321 aagtttagtc atttccgctg ttctagcatt tgtcataatg cattcgcctt gaacaaaaat
     1381 tttatatagc cttattgcat attcagcaca tttttgagtc atacctccaa ttattctatc
     1441 attttctaca agctctctta taacttgtcc aggtaaaacc ctctctggac aatgggctat
     1501 tttaatatcc gacacttcgc cacattgatg aggaaaactc aaatctgatc tttcttctgc
     1561 aagccacttt gccatttgtt ctgttgttcc aactggagat gttgattcca agattaccaa
     1621 attacctttt tttaaaactt ttgctattgc tttagatgcc atctcaatat aatctaaatt
     1681 tggctcgtga ttatctcctt taaaaggagt tggcacagca ataataaaag catcagcctc
     1741 ttcaggtaat gttgttgctt tgagataacc atcatttaca accatatgta ccaaaatatc
     1801 taatccaggc tctactatat ggatttttcc tttatttata atatctacta tattctgatt
     1861 tatatccaca cctataacct taatttttct actagcaaaa atagcagcgg taggaagacc
     1921 tatataaccg agtccaatga cacatacttt attaaattga ttcattattt ttccccttta
     1981 ttaatatatt tataattttc tcacaagccc taccatctcc ataaggatta tatgctttgc
     2041 tcattttttc atactcatct tgatcatcaa ttaacttttg tgattctctt ataatatttt
     2101 gtttacaagc tccaactaat tttaccactc cagcttctac ggcttctggt ctctctgttg
     2161 tttcacgcat taccaatatg ggctttccta aactaggagc ttcttcctgt ataccacccg
     2221 aatcggtaat tataaaatac gattttgaca taagatatat aaattcctca tatttaagag
     2281 gatttattaa ataaatatta gaaatattta aaagaagcat ttttacaggt ttttgcacat
     2341 taggattcaa gtgaacagga taaactatat cgatatctgg attattgatc gcaattattt
     2401 ttaatgcttc gcaaatttgc aaaaatccct caccaaaatt ttctctacgg tgtccagtca
     2461 ctaaaataaa ttttttatta tcatttattt tatattcatt accaatagaa gataaaactt
     2521 ttattttaaa agttttatca tttttaattt tttccgtcat ataaaacaat gcatcaataa
     2581 ctgtattgcc agtaataaaa ataccctctt tattttttcc ttcttttata agattttcag
     2641 cacttttaac cgttggggta aaatgaatat ttgccaaaac acctataatc tgtctatttg
     2701 cctcctcagg ccaaggatta caaatattat aagttctaag tcctgcttca acatgtgcta
     2761 tttttatttt ttgataaaaa gcagccaacg ctgtgacact cgccgttgta gtatcaccat
     2821 gtactaaaac aatatttggt ttaaaatcat ttaatacatt tttcatgcca caaaggattt
     2881 ttaaagtaat atcatataaa tcctgatttt cttgcataat gtttaaatca taatcgggtt
     2941 taatatcaaa aatatttaga atttgatcta acatttgtct atgttgccca gttacacaaa
     3001 ctctaaaatt aacatcattt ctattttcca ttattttaac tagcggagcc atttttatag
     3061 cttccggtct tgtgccaaat actattaaaa tttttttcac caaataaaaa ctccttttaa
     3121 tttttcacta attataatat ataaaaaatg caaattaaat ctcccctata gcataaaatt
     3181 ggataatacc tacaacctta ttttccttag atacaacaat ttctttaatt ttatatttta
     3241 gcataatttc ttctgcttta cttgccatag catcagcatc aactacttta ggatttgtac
     3301 tcatgatttc tttagcttta aaatcaaatc ttggtttatc acttgctttt aaagcacgac
     3361 gcaaatcccc atcagtgata ataccaacca atttttcatt ttcaagtact acacaaagtc
     3421 ctagttttcc actagtcatc acatcaacaa gatcgttaaa ttcggtatca ggatgaacta
     3481 taggaaggtt gcttgaaacc ataagatctt ttaccttggt taaaagctta cgacccaaac
     3541 ttccccctgg atgaaaaagg gcaaaatcat caggcttgaa atttcttacc ttcatcaaag
     3601 cagcagctaa agcatccccc ataaccaaag ttgcggttgt cgaagacata ggagcaagct
     3661 gcaaaggaca agcttccttt tccacagcta tatttaaaaa tatatcgctt tgctttacaa
     3721 gggtggaatt ttttttacca cacattacta taagtggaat tttacgcttt tttatagctg
     3781 gaatgatttt taaaatttct tcagtttccc ctgaatttga aatagcaatt aaaacatctt
     3841 cagaagttag cattccaaga tctccatgca aagcctctcc tggatggatg aaaaagcttg
     3901 gcgttcctgt acttgctaaa gtagctgcta tcttagcacc tatatgaccc gatttaccca
     3961 ttccactgac tatgcaacgc cctttggtat ttagcatcaa attcacagct tgattaaaat
     4021 tttcatctaa atttttagcc aaatccaaaa tagcttgcgc ttctttttca aagacttctt
     4081 tggctatttc aagagtattc atttttaaac cttaaagatt aagcacaaca ttggttgcaa
     4141 tagcaatttg ataaagaatt tgagttaaca ttgaaaaaat ttgcaaattc tcactatcta
     4201 cttttggcaa tactaacaca gaatcgcctg gtttcatatc tataccacta tgatattttt
     4261 cagcttttcc attgcttcgt atcaccaaaa cttttgaagt atccgctctt tctccataac
     4321 ctcctgcaag attgatataa tatcttaaat ctttgccctt atcatacaca aaagctccag
     4381 gtaaagaaac ctcaccttga actatgatga gattattctt acttggtaca ttaatagtat
     4441 caccatcttc taaaataacc gaattataag actttggatt atcaatgaca atttgaccct
     4501 taggctctac ttgcttagct ctttggataa attctaaaat cgtttttgct tgttgagctc
     4561 ttatagctgc accttgagct gtaacagaac cactagttaa agctagagtt tcaagctctt
     4621 taagctgagc attgataagt tctttttgag ttctagctac actttttcta aacacttgta
     4681 aagcttgcat gtttgattgt ggattagctt taattaattt agaaatatct tctaaagtcg
     4741 ttcctttacc cacaactaaa gtttttaaac cattatgctc gccatttaca cttatagtta
     4801 tattttcaga aacatactca gggtgaaatt ctacctcatc tcccgttcta agtaaaactt
     4861 ttgaaaattg cattttatta taagcactga catcaagttt atgatcttca ccataacttt
     4921 ttacgatagc attagtcacg ataggtttag cacctgatac tctagctaag tcagctaaag
     4981 ttttaatatc atttgaaagt tcaaaacgaa aaggtctttg cacatcaccg ttaacaaaag
     5041 cgtaattttg aacatttcct actaaaataa catctccact tctaaaagga aaaagatcca
     5101 tttgcccctt tagtaaaaaa tcatataaat caatattttt tatcacgctg ttattacgca
     5161 aaatttgaat atctctaaaa cttccatatt ctaaatttat accccctgct ttatcaagat
     5221 actggatcac tgaatccgaa ctaagtcctt gataaagtcc tggagcatta acgcttcctg
     5281 ttacaaaaac actgacattt tgataagcat tcatatctgc ataaacaaaa acattgcttt
     5341 tatagatttt attaacacgt gcttttataa cacttacaag ggcgctattt ttcacaccta
     5401 gtaaatttac agctcctact ttagggataa aaatatttcc ttgagaatcc accactaaaa
     5461 cttgcgaaaa ctcaacagct ccccaaattt taagactgat ttgatcacca actgccatct
     5521 tataatctgg gttataaact ctttgattgt aatttttaaa atttccatta aaaagatgag
     5581 cgccaaatac taaaatttga tgaatttttg taagattatt ttctttattt gctatatcat
     5641 aatttgagct taaattttga tctatgctag ttgtagtaga accttgatcc tctgctgaaa
     5701 tgatttgtga aacatccaca gctccaaaac ataaaataca actaaaaagt aaaattaata
     5761 tttttttcat tttaatactt atgctcctct attatcattt taataaattt aacaatccca
     5821 aaaatcaaag ataatacaat aaatgctgtt aaaatatcat aaattctttc aggatatttt
     5881 gcgctttctg gaatatctgg actttgaatg atgacaagtt gttttatttt tcttaatgct
     5941 tctattctag cactttcata agcttttaaa gctgcttcat aagctttttg cgcaaaagta
     6001 gcttctatag ttagatcttg aaatttagca gccaaatcat taagcttttg agaagaattg
     6061 ttagctgaaa ttttagattt ttcccttaaa agctgttttt taatcgcttc aatttctgct
     6121 ttaagtgcta ctacttcagg tgctgcatca ttcatatagc tttgtaaagt taaaagttta
     6181 gcttcttttt gagctaaatt agtctcaatt tgcgcaacca aacttgcttt agcttcagct
     6241 tgtttcaagg gatcaaaaac cccatattta ttttgaaaag caatcaaatc attttgtgct
     6301 ttttgatatc gttctttgta tttttgtact tcattttcag caaaagccat ttgttctcta
     6361 gctgctttat gagagatttc gttgataaac ttttcacttt cttgcataat agtttgagca
     6421 atcaaatgag ctgatttagg tgtaaaacct tctacttcta cctgcaaaag cttagtagtt
     6481 tcatccgtat gcaccttaac tcttgcttgg taatatttaa gataagattc tatcgaactt
     6541 gaatcccaaa ttttaaaagg caaatctata tgttgttctt gataaagact tttaagttta
     6601 attttcccat ctaaaatttt taacatatca cttgattcta tataaccttt tagataattt
     6661 aaatcttcgc ttgctgtaga agtactacca agcaaagaca aaattccatt tgtttgagca
     6721 ctttctccac ttgttgatct aacatctaaa atcatcgtgc ttacatatct tggcgctgca
     6781 atcaatgtat aataaatcac aacaaaaatc attataaacc aaataatttt aaaagaatca
     6841 aatatactta aatctttgat tttttctaat aaagttttat tttcttccat taagcttttc
     6901 cttgatatac agctattcct tcatctacat catcataaac cgtgatttgt ccatttttca
     6961 tataaattat tttatcacac cattctttaa tttcagctac attatgagat accataatca
     7021 cctttgattt gcttaatctt tctctatata atttcacgct tttttcccta aaagcaggat
     7081 ctccaacagc tccagcctca tcgatcaaat aataatcaaa atcaaaagcc atactaagtc
     7141 caaaagctat cctagcactc attcccgaag aataagtctt cataggctca tcaaaaaatt
     7201 ttcctatttc agcaaaatct tccacaaatt ttactttttc ttgaagttct ttacccttgt
     7261 atccatacac cctagctaca aatttagcat tatctctggc agttaaagaa ccttgaaaag
     7321 ctccatttaa acccaaaggc caagataatt ttttattagt aattatcttg ccactatcag
     7381 gaagctctgc tccgcttaaa agtctcatga gagtggactt gcctgcgcca ttatatccca
     7441 ttaaacctat gctacaattt tcaggaaatt caaaagtaaa atttttaaaa acataatgcc
     7501 ttccaccact aaataaagga taagatttag ttagattaat tagcttgatc attctttttt
     7561 tgccgccgtt agagcttgtc tattatagta gtaaataaaa agccctataa ataaaacaag
     7621 taaaatccaa aatatagcat aaaaataact atattcatct tgcaaaggat aattttcaaa
     7681 aaaattaaat cttaaaagct ccattatgtg aagcaaagga ttgtaataaa atatatcaag
     7741 taaaggacga ggagttaacc aggtgggaaa tataatccca gaactccaat aaaatactat
     7801 actaaaataa gctaataaag ttcttaaagg ttctacaaag tgccaaacaa tagcaaaaca
     7861 aatccctaaa gcaaaagctg agcatatgag taaaaaaata caaaataaaa ctccaagtaa
     7921 atgaacagga aatacatcga gtctaaagaa ccaccctgca aaaaaaagca cagtgataaa
     7981 aatcacaaaa taaatacaaa attcaagcaa agttctagca ataaatacat gtataggttt
     8041 tacaggttta taggcaaaca aagataaatt tgctcctatt ccattcataa gctgagttac
     8101 tatacttcta aacataaaaa aaggcataac gcctgaaatc aaaaacataa aaatagaaat
     8161 tccttcaggc ataacttgat gatgatattc cctaataaca gttcctataa tagtcaccaa
     8221 aagcacaaca ctcataggct ctccaactac ccatatatat ccaagatacc tattttttcc
     8281 aaatctagtt tttaactctc taaaaaataa agcgtgaatt acatttaaca tttattttct
     8341 atacctaaca atttacataa accataatca taactcattt ttttaaacaa aatcataaaa
     8401 atttattttt tacaaaattc aagcttttta ctaagtccta aagcattgtt agtaaattta
     8461 agccaaaaaa gctctaaggc ataaattttt gcacttttat caagtttagc aaagggaaat
     8521 ttagaaaaat aaattttcat ttgctccttg cttgccattt taaactcggc cttagcttgc
     8581 acacctttta aaaaggctat tttactttct ttggctatat taagtgctat acttgaattt
     8641 tcactggcta atcttatatg cttagtatct tcatgagaag cgataataaa agctaaattc
     8701 ttctcatcaa aagcataaaa agcactagct gtataaacac ctttttcatc aatcatagcc
     8761 caagataaaa gctgctcatt ttttataaat tctaaaattc tttcatccat attgtaaaaa
     8821 ttatactaaa atatttttaa aaataaccga tttttaattt aaactataaa tataagggga
     8881 agaaatgcaa attgatgcta gcaaaaacca aagtttttcg atggattata caacaaaaag
     8941 tggcaaacat ttagccttat ctatgtatga caatcaaagc gtgagttatg caaataatga
     9001 agaaggtaaa actcttaatc ttaagcatca gtatggcttt agctttactt ttgaaggctc
     9061 taagctcaca caaaatgatc ttgatgagat taaaaatgct atgaaagaag ttgaacctat
     9121 gatcaaagac tttttagcaa attctaaagt cggagagtta aagccaaaag aaattataga
     9181 atcagctatg caaatggcaa atgttctacc aacaccaaat gatgaaaacc atcaaaatgc
     9241 tattatgaat aattttacaa ataaactcag tgatttacta aaacaaaatc aaacagatga
     9301 taaagatatc aatgcttcca tgcttgaaga tagcaaaaaa cttcttgatg aagttttaga
     9361 acaaatgaaa aaacaacttg aaaaacagca agaaaaagcc aaggaaaatc aagataagac
     9421 agatgatagt ttaaatcttt acgcttaaat catataatat taaaaattat caaggagttt
     9481 ttaaatgaca aatatcgaaa ttttagaaaa tatgctcaaa ctccaacaaa aactcaacga
     9541 tgaaacaaac ggcttaaatt gggaaaatgg ctacaccaaa gaaggaaaac tgatcagttg
     9601 gagacgctgt atttatatgg aatgtgcaga acttatagac tcttttacat ggaaacattg
     9661 gaaaaatatt tcaagtccaa caaattggga aaatgtgcgt atagagattg tcgatatttg
     9721 gcattttatt ttaagtcttt tacttgaaga atatcgcgat aaaaacaata aagatttcaa
     9781 agctatagcc acagaagtta atgctgtaag cgtgtttcaa gatttttgca aagaagaaga
     9841 ataccctaat gagggtgata tttatagcat tttaaatgat atagagctta ttatccataa
     9901 atgcagtggt tttggattta atcttgaaga attactttca atatatttta ctttagctat
     9961 taaatgtggg ctaaatcttg aaattcttta taagacctac ataggtaaaa atgttttaaa
    10021 tatttttaga caaaacaatg gttacaaaga tggtagctat aaaaaaactt ggaatggcaa
    10081 agaagacaat gaagttttag ctcaaatttt agaacaagag cttgattttg atactattta
    10141 taaaaaacta gaagaatgct acaaaaaggc ataatttgga tattttaaaa cttgcaatca
    10201 aagatttttt aagtcttaaa tttttaaaat ttgccttaat tcctttgatt tttagcctta
    10261 tactgatgct ttttttagga gtacttggct tttcggcctt gcttgattat tttaattctt
    10321 tatttagcgt tggagaggat tcgttttggg cgtggtttta tgcccttcat tttgtacaaa
    10381 ttttaatcac catcataagt tttttatttt caggttttat tgttgttttt gcttcggttt
    10441 ttttagccct ttttatcact tcttttctta ctccttttat cgctaaagaa atcaaccaaa
    10501 aatattacca ttatgataat acaaacgaag tttcaaccct aaaaactatc tttgaaattt
    10561 ttaaaatatt tataaaattt atagggattt tattgctttg caccttggct ttatttttac
    10621 cttttatcaa tatttttgta tattatcttg ctttttatta tctctttcac aaacttttaa
    10681 tgattgatgt tacaagcacg attttagaca aagaaagttt taaaaatttt cattctgatt
    10741 tttcgccttt agagtttaaa tttagcactc tttgttttta tctactctca tcagtgccac
    10801 ttttaggact ttttttgcaa gtattttttg tgatttttct cacacattta ggctatcaaa
    10861 gaattttaaa actaaaagct aaggcttgaa atatcgattt tgtgattata taaataagct
    10921 cttaaaagtc ttggaatttt agctattcta cactcttctt taaaattttt aggtaatttt
    10981 tgacaagttt catattcaaa aacaatagct tgttcgtttt tatatacaag tgctatttta
    11041 ccacctaaaa cacaatcacc ctttaaaaac tcttttcttt gcgctgtgct taaaagtaaa
    11101 cctttcattt tcactgctct agcaatcaaa ctttcatttt taggacaaat aagaagtcct
    11161 tgaatttctt tgatattttc aaaatcataa agttttttcc tatcttcacc aagataagaa
    11221 aagcttcttt ttaaaccctg atgaaattta ctcacaaagg cattagagaa attttttctt
    11281 atataatttc taaaatattt ttcattttca ttactttcat catggaaata aaaaatatct
    11341 ttttctttta aaaaagatga aatttcatct ttacttataa agagtaaagg acgtaaaagt
    11401 gtataatttg atcgtttttc atactcttgc atacctaaaa tttcagccaa acctgcgccc
    11461 cgtgaaagtt gcatcaaaaa ccattcaaac tgatcattta aatgatgggc taagataaga
    11521 taatcataat cttgctcaag acaaattttt tcaaaaaaat catagcgaaa atctctggct
    11581 tttttttcaa aattactttg aaatttagga gcctgtttta tgaaaatttt tttatgaaat
    11641 ttcaaagcaa gttctttggc ttttaactct tctaaatcac tattttttct agttttataa
    11701 tttatcatca caagatcaaa gtcgatcttt tcttgcatta aaagataaaa aagcgcacta
    11761 gaatcacttc cataagaaaa agcgagtaaa tttttacccc tttttaaaag ggataaaatt
    11821 tcatttttaa tttgcatcta cttttcttaa agccttagca aggagctttt tatcaaggtt
    11881 ttgtaaaatt tcacattcat aaatttgccc catttctaaa tttccacatt cactttcatt
    11941 gataagaatt tctccatcaa tctctctatc ccatcttaga tctttagctg cgatgaaaaa
    12001 ctctccctcg ctactttctc ctgtgcaaac tactaaacgc ttttgcccta cttctttttc
    12061 aaaacttttt tctatcactt catcaacaat tttttctatg attttaagcc ttttattgat
    12121 cactttaaaa ggcacttgct ccatatcaaa agcagctgta tcttcttcct tggaatacgc
    12181 aaaaacactc actctatcaa aaccaaagtc tttaacaaat gcacaaagtt cttcaaaatc
    12241 cgcctcactc tcacctggat gtcctacgat aaagcccgtg cgtaaaaagc tatttggcgc
    12301 acttttcatt aaatttagca tttctttaag tcttgtgcta tttgccccac gcttcatgat
    12361 tttaagcata ttatcactta tatgctgcaa aggcatatca aaataattta caaaaatttc
    12421 agaagctata atgcgtttga tcaaagcttc actcgcactc gtaggataaa aatataaaat
    12481 tctagccgct cttatacctt tgattttttc cacctcatcg attaagcgta taagtccatc
    12541 tttttcaccc ttatcaaaca aataagaact tgtatcttgt gcaataaaag aaaagtcctt
    12601 ataacctcta gctaccaaat ctttaagctc agctacaatg ctacttattt cgcgagattt
    12661 taacttgcct ttaaaacttg gaatagcaca aaaagagcat ttttgattac aaccttcggc
    12721 aatttttata aaagcatggg aatttgaacc tgtgataatg cgtttggaat tttcactctg
    12781 taaataagtc gaatttgaaa ataaatttgt ttttttaagt atcatttcgt cgattctttc
    12841 ataatcaccc acacctgtga aaagatcaac ctcaggaagt tctttcataa gttcttcgcg
    12901 gtaacgctgc atcaaacaac ccgtaaccac caaaagagaa tctttttttc tttgttcgtg
    12961 caaatccaaa atcacattaa tactttcttt ttttgcacta tcgataaaac cacaggtatt
    13021 tacgattaaa acatcggcct tatttggttc atcgcaaagc tcataagcac taagacgtcc
    13081 tagcatgatc tcactatcga ctaaattttt attacaacct aaagacataa gataaagttt
    13141 tgacattttt ttcctatatt aaagttttct tttgatataa tttttgattt taaaatataa
    13201 ttatagcaaa gaaattttat ggataattac gaatttagcg aacttttaaa aactttaaaa
    13261 aacaaagtcg gcaacatagc ctccatcatc aagcctgaaa atatccaaac aaggcttaaa
    13321 gaaatcgaag agcttgaaaa ttctccttct ttttggagcg atgtaaaaca agcagggatc
    13381 ataggcaaag aaaaaaccaa aatcaccaat ctacttaaaa actatgaaaa tgcttttaat
    13441 gccctaaatg acgcaagcga actttttgat ctggctaata gcgaaaacga tacagaaacg
    13501 cttgaagctt tatttaatga cgcaccaaaa cttgaagata ccatcacaag tcttgaaatt
    13561 tccatgcttt taagcgggga aaatgatggt aaaaatgcca ttgtttccat tcacccaggt
    13621 gcgggtggaa cggaaagtaa tgactgggca agcatgcttt ataggatgta tttaagattt
    13681 tgcgaaagag agggttttaa agtcgaaact ctagactttc aagaaggcga agaaacagga
    13741 cttaaagatg tgagtttttt ggttaaagga gaaaatgctt atggttattt aaaagctgaa
    13801 aatggcattc accgtttggt aagaacttct ccttttgata gtgcaggacg ccgccataca
    13861 agcttttcaa gtgttatggt aagtcctgag cttgatgatg atatagaaat tgaaattgaa
    13921 gaaaaagaca taagaataga ttattacaga gcaagcggtg caggcggaca acatgttaat
    13981 aaaacagaat cagccgtgag aatcacacat tttccaaccg gtatagtcgt acaatgccaa
    14041 aatgacagaa gtcagcacaa aaacaaagcc accgctttta aaatgctaaa atctcgtctt
    14101 tatgaacttg aactcatgaa acaacaagat agtgctaata ctggagaaaa aagcgagata
    14161 ggctgggggc atcaaatccg ttcttatgtg cttttccctt atcagcaagt taaagataat
    14221 cgcagcggag aagctttttc tcaagtggat aatattcttg atggggatat caaaaaaatg
    14281 atagaaggcg ttttgattgc tttaaaagca gagtaacagg ctttaaaaat aagtaatttc
    14341 cgcaaaatgt cagtataaaa aggaattaga aagatagcgg gattttcccg cttgttttat
    14401 tatcttgcat aaaacctaag agcatcattc acagaataat aaactctttt cttaaaatct
    14461 ttatcgcaat aaacactcac aactttatag tctttttatc gtttggattt aataagaaaa
    14521 catagtttga gtatggagtt ttatctattt ctaaatcacg cttcatttct ttaattttgc
    14581 cttctggatt gttaatatca ctaattgttc tgactgaagt ataatcataa agtttataat
    14641 ttggatattt tttcataatc tcttgattac ctaaatcaaa catagcttga tcgttgccat
    14701 tgttttttaa ctcgactaaa tcgccatcgc cacaatctac aatcaaagtc atagctccta
    14761 aagccaaagc acttgttaaa atctttttca ttatttttgc tcctagtttt aaaattaaat
    14821 taatataact atacctaaat ttaaaattta aatatcattt ttgcaataaa ttctaaagta
    14881 aaaatcacgt aaaaatttaa ctcataatta tttcattcaa acaaattttt atgcaaaatt
    14941 tcttctaaaa ccacagtagc ataagagcct ttttgcaaga aaaactctat acaaaaatga
    15001 gctttttctt catcataacg ccattttaac tcttctaaat atccccacat aaagcgtctt
    15061 gaaccttgca ttttagcctt aaactccaaa gtatctttaa aaatttcatt ttctaaattt
    15121 aaggccaaac cttctcctgt ttcataagcc ttagcaccga ttaaaagccc catggcgctt
    15181 atatctcttg ccttaaaacg cccaagctca gcacttaaat cctcgcataa aaaacacttt
    15241 ccaaaaggat aatgccctaa aacctcacct tttaaaagct taaaaaattg ttcttgtttt
    15301 ttaagttcct tagcttcttc tttagaaatt ttataaattt ggatcaattc tttttcgcta
    15361 aaatcatttg caaaatgtga taactccact cttttactca aatagcgatt aaaaagctca
    15421 ctttgaaaag ctgaaattaa aaactctttc atttttacat ttttcatttt tttgccacgc
    15481 aaaatttcaa gcccttcttt ataattatcc ccaaattttc caaaacgctg ataaccaaaa
    15541 taattcgcaa aaccttgttt atccaaattc atcaaagctt gttctagctt taaagcatcg
    15601 cttggcaaaa ctttttttaa gcgtatgaaa aaagaatttc cttttaaatg ccctattctt
    15661 agcttgtttt catgggtaaa aatttctaaa attttaagtt tagaatgaga aaaatttgac
    15721 aaaaaactct caaatttttt aggcatagaa aggtattgaa aggttgatcc ttgcttgtct
    15781 ttaagccctg cataaccaaa atctcttatt ttaaccccgc ttgcttcact taaaattttt
    15841 aaagcttcat ttgtggttaa atctttttta ttgatatgca aaataagatg ttcacccttg
    15901 ccgctaaatt catacaaagg cttttcacgc actacaaaat catcgctatt tttactaaaa
    15961 tacgcattaa taggactatg ttttaagcta tacaaaggct taaaaatggt gttctcttcc
    16021 gctaaattca tattttcctt tcactgcttt tccaaagata tttaatttca cgccgtgttt
    16081 tttggctatt gtttctatat tttgccgttc tttttcatca aaagcaaaca aaatttcata
    16141 ttcttctccg ctataaagcg tataatcatc aagtttttta aaccaagaaa taccgcattt
    16201 atttaaagct aaaagtcttg ataaatcttt gcttaaacca tctgaaatat ccatagcaca
    16261 agaaattaaa ggtgcgactt cataaaaaaa actagctctt aattttggct ttataaatac
    16321 atggtttggt tttaaagtgc ccccattttg taaaatttca agccctttta aacttcgccc
    16381 taattttcct gtataagcaa gtaaatgtcc tttttttaaa ccttttctaa aaacggcttt
    16441 atcgttaatc tttgaaatga tagtaagact aatgtctatt ttatcattgc ttatagtatc
    16501 accgcctatg atttttatat taaatttcct agctgttttt aaaaaacctt tttgcaaggc
    16561 tttgatctca ttttcgctta aattttttgg taaagcaagt cctaaaagtg cgtattttgg
    16621 tacagcattc attgaaatag catctgagat attaacaagc attgcttttg tagcaatttg
    16681 ctctaagcta aaccactctc ttttaaaatg cacattttca aaaaacaaat ccttactaaa
    16741 acaccaatca tcaataatag ctccatcatc gccatttttt tcatttaaaa aagctttgat
    16801 aataaaatct tctttgttca taatgcgtga ttttataaaa tttcctttta aattctagtg
    16861 aattttagaa taattttata taatataaaa atatttaagg aaaaaccatg aaaaaattag
    16921 aattaagaat ttttagattt gataaaacca aggattatga ggcttattat aaaccttata
    16981 tttatgataa ttatgaaaat tttgcaagtt tttatgatct gcttttgcaa gttcaagatg
    17041 atgatattta ttttgatttt gataaagatg aagatactta catagttgta aataagcaaa
    17101 tcataccact ttttacacct ttagaaaaaa tagcaaaaga atttgatttt agtctttgta
    17161 tcgagccttt aagcacaaaa agagccatta aagatcttat catcgataaa aatgattttt
    17221 tagacaaata caaatatctt gaaaaatttg gtgatgaaga ggataaaaaa ctttatgcaa
    17281 aatatgatta tttatattat gcaagtgaaa ttttagacta tcttcctgaa tatataggcg
    17341 atggagtgtt ttatttggct tcaaaaatga tagaaaaata tcctgaaaaa aagatagaaa
    17401 ttttaaaaac tctagcagat aaagaaaagg gtatttttta tcatcttgaa agcaaaaatg
    17461 aaattttaga aacaacgatc aaaaacctac aaaatgaaat tttaaattta gggctttttg
    17521 ataaaaatat tttacacttt gatttaccta aaaccaatgc ttttgataat gagatcaaag
    17581 aacttaaaga aattaaacat aattttaaag atttcaatat agctttttat ggttttaatg
    17641 cttgcgatac tttaaaatcg aaacttaagg ctaaatttat ttcctatgaa aacagtataa
    17701 aaaataatgg ctttagcttg cttaatctaa atcctacgct aagctataaa atagccgcag
    17761 atattgtttt ggacgcttat gatagcgggg ctgattttat ggtagtaaaa gaagaaaaag
    17821 atttttatct ttttgatact tgtgctaaaa aacttatgca aacaagtgga agggaatttg
    17881 aagactttta tattttgagc cgttttgagt ttttagccct tatcgaaggt atacaagctc
    17941 catcattaaa aaatcacact ttaaaggtta gtttgatatg aaaatctctt tagaatgcaa
    18001 agatctcatc atagaaaaaa ctttagaact ttttttaaaa gatcatttgg taatgaaaaa
    18061 aaattgtgat ttcatcatta gcgatgaaaa aattcatacc gcaaaaccct tatttatcat
    18121 ctctaaaaac tctccatttt taagcatacc atttagcaaa gaagccttgt ttgagtcttt
    18181 aaatgaattt gataatgcct taaaagcagc agctttgcaa cttgcacttg aacaaaaaag
    18241 actgcttgaa gaaaaaattg acgctattgc tttggaattt aaaaaagatt atgaaaataa
    18301 aatcgatctt gccataaaag atcttaaaaa caaactcgta aaagcactta atgatgaatg
    18361 atgaatttat aagcgttaaa gactttttta atcacaatga aaaaagaaaa aaatttcttc
    18421 aaaaacaaga aattaaacct cctaaagaaa aaacaaaaaa aactaaagaa acaaagcttt
    18481 atacaaatat agaaagtggt aaatacaaag ggaaaaaact acttttacct agtcttacaa
    18541 caacaagaag tactaaaagc atagtcaaaa gttgtgtttt taatgtaata agagaagatt
    18601 taagaagtaa aattttcatt gaagcctttg gaggaagtgc tttaatggcg gctgaagcac
    18661 taagtaatca tgctttaaaa gcttatgcta tagaacttga tgcaaaagct tataaaattg
    18721 ctttagaaaa tgctaaaaat atagatccaa atttagaagt gatccatgca aatacttttg
    18781 aaattttacc taaactcata gaaaattcaa aaaatgaaat catattatat cttgacccac
    18841 ct
//
LOCUS       DARGEY010000018        18704 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.018, whole genome shotgun sequence.
ACCESSION   DARGEY010000018 DARGEY010000000
VERSION     DARGEY010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18704)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18704)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18704
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.018"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..139)
                     /locus_tag="SF008_000583"
     CDS             complement(<1..139)
                     /locus_tag="SF008_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8232880.1"
                     /translation="MIINQIYSIDSCDDVELNIKRGSKLEFRLTYDDSKEIEAIVCII
                     PG"
     gene            complement(201..941)
                     /locus_tag="SF008_000584"
     CDS             complement(201..941)
                     /locus_tag="SF008_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEG8232881.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDDEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            complement(938..2026)
                     /gene="pstA"
                     /locus_tag="SF008_000585"
     CDS             complement(938..2026)
                     /gene="pstA"
                     /locus_tag="SF008_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEG8232882.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQITEKSWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLVQKGEIELKFNSNFFLNGDSKSPENSGILSSVVGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAGAIGETAPLMIIGMIAFIPDVASSIFDPTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVVLNLSAILLRKYFQGKLK"
     gene            complement(2023..2937)
                     /gene="pstC"
                     /locus_tag="SF008_000586"
     CDS             complement(2023..2937)
                     /gene="pstC"
                     /locus_tag="SF008_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEG8232883.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVVT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFVITLIINMFSVYLINRFHKRKNL"
     gene            complement(2947..3942)
                     /locus_tag="SF008_000587"
     CDS             complement(2947..3942)
                     /locus_tag="SF008_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEG8232884.1"
                     /translation="MKKILSLSVASLALCGALNAADLKIAGSSTVYPFTSFVAEEYAS
                     IKNTKTPIVESLGTGGGFKVFCEGTTDISNASRPMKLSEFETCKKAGVTDIVGMMIGY
                     DGIVLAQNKTNAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTIEELVMSDVSKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGIFGYSFLVSNSDKINAANIDGVTPSEESIADEKYELARSLFIYINAKKNPKEAF
                     DFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVKDRKILNDELVKAGKVF"
     gene            4122..4625
                     /gene="ctf"
                     /locus_tag="SF008_000588"
     CDS             4122..4625
                     /gene="ctf"
                     /locus_tag="SF008_000588"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HEG8232885.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
     gene            4668..6044
                     /locus_tag="SF008_000589"
     CDS             4668..6044
                     /locus_tag="SF008_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HEG8232886.1"
                     /translation="MTYFSLEFSILMIAFFAIYWTFKNDYKIQNILILIFSYIIYILI
                     NPYFALVLFIYTFFIHYFALLIFVRRKRYIFATCMAFIILNLCFFKYFPSIKGSVDEI
                     LNFFGLEFLNIDLVLPIGISFYTFTSITYLVEVYQKRRLESFLNLATFLSFFPTLLSG
                     PIMRSSFFFEQAYQKREFKHANLIIILLVFGIVKKVLIANYLGIYAKSILDFPQSYNF
                     IQLLSAIYAYAIQIYCDFSGYVDLVCAFALMLGFTLPPNFNMPYLAKNLKDFWARWHI
                     SLSTFIRDYIYIPLGGNRKGIPRTVANILIAFILSGMWHGNTLAFIVWGLLHGIGIVF
                     IHLLTLSKFSLQKIPALGRFLTFQFVCFTWIFFYYSKNLEDAIEYFKACYYNFFQIPS
                     YNDIYMLVAFGVLFMIYPLFINFKEYCIKILNLTPFLLKPFIIAFILLLVFAFMPDGI
                     PDFIYSSF"
     gene            6045..7055
                     /locus_tag="SF008_000590"
     CDS             6045..7055
                     /locus_tag="SF008_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HEG8232887.1"
                     /translation="MSVVRFFFILIIVLGLVVVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLPQTNEETTNQENKSIDENLSKIDKVLNTLENDENTS
                     HKETNPTLIQDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFVKNSNIKYLVVLLGANDPWDIKKGGSYHRFGSPS
                     WIDIYTSRVDEIIKIAKKHKAKVFWFEIPPVKREELNKKIQILNKIYSDEILKNKEIF
                     INTKLFFSVNDQYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            7042..8220
                     /locus_tag="SF008_000591"
     CDS             7042..8220
                     /locus_tag="SF008_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEG8232888.1"
                     /translation="MLVNKFKIILLFFIIFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVLKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKTKGAKINLDTTLDKKKFK
                     IGFLFKAKQNTNAFSIKDAKNRSYELRTTQINKWSYKELELDLPLQISALQKDAELGG
                     YFITNKNNNVFLDTIAINGAKSDLWLSWNQEVVKKELELLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDMHQFMQDSGGKNKWIEQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
     gene            complement(8223..9593)
                     /locus_tag="SF008_000592"
     CDS             complement(8223..9593)
                     /locus_tag="SF008_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEG8232889.1"
                     /translation="MKIILSIFLAFFLSACGVKLSLPKEVDLTQEQMKDLNLTYDWYR
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALARADLIDYDLYPTLSGNLGFGADKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLSNLEQMEELYNYKYKLGKIEELDLLNIEQSLLRAKQNLLGN
                     DQNRNLLIKNLQDLLAKQEGFAYIEYFKTLSLNDFKTLSPDFNIPLKALAYRADVRSK
                     LNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEILSGNVKISLPFLDYG
                     RVKQNIKISQFTYEQLLISYEQALQSAMNEFALNYKDYQSDTLLLQNLQNINIKQELI
                     TKAYYEKYILGKSELKDYLDANNTLNSTQQEFLRARFNLLKTINSYYQITALSFNDEN
                     LEFPKY"
     gene            complement(9595..11520)
                     /locus_tag="SF008_000593"
     CDS             complement(9595..11520)
                     /locus_tag="SF008_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8232890.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYVFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKNLQERSQNAKKLLNDLELAHKLDSKPNELSGGQQQRVSIARALINGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNTQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLTLKTMSKEKKTFTLLKNQAFECFKIAYSSILAHKLRSILTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIEIRPGKGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRLYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTILTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            complement(11520..12692)
                     /locus_tag="SF008_000594"
     CDS             complement(11520..12692)
                     /locus_tag="SF008_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEG8232891.1"
                     /translation="MKKKIVLIILIAILGSVGAYFIFFNNDEKISYLTQKIQKKDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIANKQYQREQKLYAAKASSLENLETQKNNYYTLKANVAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEVRMEIAEADVSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSS
                     SSSSSSSSSNAIYYYAKFYVANKDDFLRIGMSIQNEIVVASAKAVLAVPTYAIKSDPK
                     GYYVEILENQKAVKKYVKLGIKDSINTQILEGVNEDEELIVSSSADGLAPKMKLRF"
     gene            complement(12771..13961)
                     /locus_tag="SF008_000595"
     CDS             complement(12771..13961)
                     /locus_tag="SF008_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG8232892.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTAHLVCKIL
                     DEFGIKYQKNIAKTGILAIIEGKKKSQKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVDAVFGCHLWGPLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMTT
                     QFVNNIQSVISRRLAPYEAGVITVGQICAGTTYNVIPTNAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAVLIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMALE
                     FLNL"
     gene            complement(13970..14739)
                     /gene="ppk2"
                     /locus_tag="SF008_000596"
                     /pseudo
     CDS             complement(13970..14739)
                     /gene="ppk2"
                     /locus_tag="SF008_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002849683.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
     gene            14946..16649
                     /locus_tag="SF008_000597"
     CDS             14946..16649
                     /locus_tag="SF008_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HEG8232893.1"
                     /translation="MRIFGIILLSFCLCFASILSLNEAFNVKSNSYNNSISIDIELGK
                     DIYLYSNKLKLYINEKDISSLINLPQSSTRGNENVYYQKLNLALPNLLLERFAKNTTN
                     LIKLEFQGCSEQGLCYNPQTWYFDLISKKDAFEISKPYKAQKTDKKTKIESEESSIAN
                     FLATDNFFWILLSFFGYGLLLSLTPCILPMIPILSSLIVAKSNAKFSKKYSFFLSLIY
                     VFFMSLAYAIAGVIASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPLRF
                     QTFIHKKSEKGKGVLGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSALFI
                     MSFGMGIPLLFIGLGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSRIIEENYILIAYG
                     ILGVFFSVFMGIFEKSFTIISKIKKSILILILAYSLSIFLGGLFGAKNFLNPLNFNTI
                     SASKHALSYDYINNFEQLKQEIQTNTKPIMLDFTASWCENCKLLDELTFSDERIIQKM
                     QNYKLIKVDVSENNNEQIKTMKEFNVFGPPVLIFFENGKEKLKITGFISADDLLKKIE
                     P"
     gene            16646..17314
                     /locus_tag="SF008_000598"
     CDS             16646..17314
                     /locus_tag="SF008_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEG8232894.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEETQIDFLGVLDDQIAD
                     KIHHGGYHKAIFANSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDVHQIS
                     NAILQVSEPRKPCVKISRIHNNSNFTHEIFKTGLSGWYYKVLQVGQIRKHENIKILEK
                     NSTSLSVFELNQLFYSPHQILKQNPNLLDKLEKLNSLISQNWHETIHKRLKNTYDISY
                     MDSL"
     gene            17365..>18704
                     /locus_tag="SF008_000599"
     CDS             17365..>18704
                     /locus_tag="SF008_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG8232895.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENIIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPDFSKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLNKNENMAKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFILLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGIL"
BASE COUNT         6325 a         3148 c         2546 g         6685 t
ORIGIN      
        1 cacctggaat aatacaaaca atagcttcta tttctttact atcatcataa gtcaatctaa
       61 attctaattt acttcccctt ttgatattta attctacatc atcacaagaa tctatagaat
      121 aaatttggtt tataatcata ttaaaccttt ttttggaaat ttttaattaa ttatatcatc
      181 aaatttccaa aaaataaatc ttatccaaaa gcaccgctta aataagcctt ggttttttct
      241 tgttttggat tttcaaaaaa ttctttactt tcaccaaatt ctataagctc tccaagatga
      301 aaaaatgctg tataatcagc tacgcgtttg ccttgttgca tattatgcgt aaccatgatc
      361 atagaaagat tatggcttaa ttcttttaaa agctcttcta taacacctga gctaatagga
      421 tcaagtgcgg aagttggctc atctaaaagt aaaagcttag gttttatcgc caaagctctt
      481 gcgatacaaa ggcgttgttg ttgtccgcct gaaagagcta gggcattttg ctttaattta
      541 tctttaacct cttcaaaaag ccctactttt tgtaagcaat ccaccactaa agcttcttca
      601 tcatctttgt ttttaatcat accatgaagc tttggtgcat aagagatatt ttcataaatg
      661 ctttttacaa aaacattagg ttgttgaaaa accatgccta catttttgcg taaggctact
      721 acatcttgat ttttaacatc ttttccttca atttctacta aaccatcgat ttttgcgatt
      781 ttatcattca ttctgttaaa acaacgcaaa aaagtggatt taccacatcc tgaagcaccg
      841 atgagtgcgg taattttgtt ttgttctatt tgcatattga tatcaaacaa agcttgtttt
      901 tttccataaa ataaatttaa atttgttgtt tttgctatca ctttaatttt ccttgaaaat
      961 attttcttaa taatatcgca ctaagattta acacgactaa aagtcctaaa agcacaataa
     1021 tacccgctgc ggttctttct aaaaatgcac gctctggcat agccgaccat gagtaaattt
     1081 gagcaggtaa aacgctagtt ggatcaaaaa tcgaacttgc tacatcaggg ataaatgcta
     1141 tcataccaat aatcatcaaa ggtgcagtct ctcctatagc ccctgctaaa gtcaaaatag
     1201 aacctgttaa aatcataggc atagccaaag gtaacataat accttttacc atttgaacct
     1261 ttgtcatacc taaggcataa gcagcatttt tcatattgat atccacactt tttaaggccg
     1321 ctttggttga aacaatgata ataggcaaac tcatgatcgc caaagtaagc ccacccacta
     1381 aagcacttga acgaggcatt ccaaaaagat tgataaacac tccaagtcct aaaagtccaa
     1441 acaagatact aggaatactt gcaaggttgt taatacacac ttctataaaa tgtgtaagga
     1501 tattttgtgg tgcaaattct tctaagtaaa ttgccgctgc aacgcctata ggaacactca
     1561 caaccataca aacaagcata acaagcaaag tccctacaac tgaagataaa attcctgaat
     1621 tttcaggaga ttttgagtcc ccatttaaaa agaaattgct attaaattta agctctatct
     1681 cgcctttttg cacaagatca tcgactaaag ttctttgttt ttcactaagg cgattatatt
     1741 tttgcttcat atattgatct acttctgaat ttgccaaaag ccaagatttt tcagtgattt
     1801 gtcctgttct tatttttctt tgttctgcgc gagataaaag atcataagca ggagaatttc
     1861 tattagcctc tacaaaaata taagtttgct taaaagcagg aaatccaaga taagccacac
     1921 ttcctaaaaa gatacaaaga aaaattaaat taatataaag ccccatttta caaagtcttt
     1981 taaaagactt tgaagctttt tgtctttttt taaaaagttt tttcataaat ttttcctttt
     2041 gtgaaagcga ttgataagat aaacgctaaa catattgatg attaaagtga tgacaaaaag
     2101 caccaaacct aaagaaaaag cacttaaagc caaagaacta tcaaaagctt gatctccact
     2161 taaagcttct acgattttta ccgttaccgt tgtcatatct tctaaaaaat ttaaagttaa
     2221 atttggacgc aaagaagctg ccatcaccac tatcatagtt tcgcctaagg ctcttgaaag
     2281 tcctaaaaga caagctgcaa ctataccagg aatagcctca ggtaaaatca cggcaaaaac
     2341 cacttctttt tttgtcatac ctaaagcata agcgccatta atccttttct cgcttactgc
     2401 ttcaatgcaa tcttgagata aagaagccac tataggtact atcatgatcc ccatgataaa
     2461 acctgcgcct aaagcacttt gaaagcttgc ttgtatgcca aataaagaaa aaaaccacac
     2521 tataaaaggc gctacaacta tagccgcaaa aaatccaaaa acaacagtag gaatccctgc
     2581 aatgatttct aaaataggtt ttaagtaatt tttagatttt ttgccagcaa aaacacctaa
     2641 atatatagca cacataaccc ctaaaggtaa agccgttagc atagcaatca atgaaatata
     2701 aaaagttccc caaaaaagcg atagcgcccc aaaaacacct tgtttactcg tgccatctgc
     2761 attcataaaa gctgcatcag ctgcccactg acttgagaat aaaaaggtaa caacgctttc
     2821 tttttgaaag aattttaaag cttcaattaa aattgtaagc atgatagcaa aacttactat
     2881 cacgcttaca aaagcacata aaaaaagtgc aaatttgatt attttttctt ttaacaaagt
     2941 ttttccttaa aaaacttttc cagcttttac aagctcatca tttaaaattt ttctatcttt
     3001 tacgtgtttt tgagaagctt ttaatttatc atcactcaaa ggaacaagtc ctattttttc
     3061 aagctctcca ccactttttg ccaaatcatc actcatataa atttttgcaa aatcaaaggc
     3121 ttcttttgga tttttcttag cattgatata aataaacaaa cttcttgcaa gttcgtattt
     3181 ttcatctgcg atgctttctt cgcttggcgt aacaccatcg atattagcag cattgatttt
     3241 gtctgaattg ctcactaaaa agctataacc aaaaattcca aaagcatcct tatcaatagt
     3301 aagtttggaa acgattagat tatcattttc accacttggg atataagcac catcttggcg
     3361 tatggtttta tactcgcctt tatactcagg aattttttta gacacatcac tcattacaag
     3421 ctcttctata gtatctcttg ttcctgaact tgatggtgga ccataaacac taattttacg
     3481 atttggtaaa tttttattga tttgattcca gtttgtataa ggatttggta taagttttcc
     3541 attttgtgga atttcttttg ctaatgctaa gaaaagttct ttttttgtga tatttaatgg
     3601 agcattggtt ttattttgag ctaaaactat accatcataa cctatcatca tccctactat
     3661 atcagttacc cctgcttttt tgcaagtttc aaattcgctt aatttcatag gtcttgaagc
     3721 attagaaata tcagtagttc cttcacaaaa taccttaaat ccaccccctg ttcccaagct
     3781 ctctactata ggagtttttg tatttttgat cgaagcatat tcttcagcta caaaagaagt
     3841 aaaaggatac acagtcgatg aacctgcgat ttttaaatct gctgcattta aagcaccaca
     3901 aagtgcaaga cttgccacac ttaaagatag aatttttttc attttttctc cttaacttta
     3961 aaaaagtaat ggaagtttaa aaaaacttgg aaacattttg gaaacatttt ttattttgta
     4021 tttttcttaa atataatttt taactatcaa aaaatttagc ttgtttttaa aaaaataata
     4081 tatcattata aaacatttta aattttaata aggagataag aatgctttct aaagaagttg
     4141 taaaattact caatgaacaa ataaacaaag aaatgtatgc ggcaaactta tatcttagta
     4201 tgagttcttg gtgctatgaa aacagtcttg atggagctgg agccttcttg tttgcacatg
     4261 caagcgaaga aagcgatcat gctaaaaagc ttatcactta tcttaatgaa acagattctc
     4321 atgtagagct tcaagaagta aaacagcctg aacaaaattt caaatcttta cttgatgttt
     4381 ttgaaaaaac ctatgaacat gagcaattta tcacaaagtc aatcaatact ttagttgaac
     4441 acatgctaac acataaagac tattctactt ttaatttctt acagtggtat gtaagcgaac
     4501 aacacgaaga agaagcactt ttccgcggta tagttgacaa gattaagtta atcggagaac
     4561 acggaaatgg actttattta gctgatcaat acatcaaaaa tattgcatta agcagaaaaa
     4621 aataatcttt gccctactat gggcaaatct cgctttggat tgaaggtatg acttattttt
     4681 ctctagaatt tagtatttta atgatagctt tttttgctat ttattggact tttaaaaatg
     4741 attacaaaat acaaaatatt ttaattttaa ttttctctta tattatttat attttaatca
     4801 atccttattt cgccttggtt ttatttatat ataccttttt tatacactat tttgccttgc
     4861 taatttttgt gcgtcgcaag cgttatattt tcgctacttg catggctttt attattttaa
     4921 atttatgttt ttttaaatac tttcctagca tcaaaggaag tgttgatgag atattaaatt
     4981 ttttcggttt agaattttta aatattgatt tagtattacc aataggaatt agtttttata
     5041 cctttacttc tatcacctat cttgtagaag tttatcaaaa acgccgttta gaaagttttt
     5101 taaatttagc aaccttctta tcattttttc caacattact ttcagggcct attatgcgaa
     5161 gttctttttt ctttgagcag gcctatcaaa aacgcgaatt taaacatgca aatttaatca
     5221 tcatcttgct tgtttttggt atagttaaaa aagttttaat agccaattac cttggaattt
     5281 atgctaaaag tattttagac tttccacaat cttataattt catacaactt ttaagtgcaa
     5341 tttacgccta tgcaattcaa atatactgtg attttagcgg atatgttgat ttagtttgtg
     5401 cttttgcttt aatgttaggt tttacccttc cgcctaactt taacatgcct tatcttgcaa
     5461 aaaacctaaa agatttttgg gctagatggc atatcagtct ttcaactttt ataagagatt
     5521 atatctatat acctttaggg ggcaatagaa aaggaatacc acgcactgta gctaatatac
     5581 tcatcgcttt tatactttca ggtatgtggc atggcaatac acttgctttt attgtttggg
     5641 gtttgttgca tggtattggc atagttttta tacatttgct aactttaagc aaatttagtt
     5701 tacaaaaaat tccagcttta ggaagatttt taacctttca atttgtatgt tttacttgga
     5761 ttttctttta ttatagcaaa aatctagaag atgcaataga atattttaaa gcttgttatt
     5821 ataatttctt ccaaattcca tcttataacg atatctatat gttggttgct tttggggttc
     5881 tttttatgat ctatccttta tttattaatt ttaaagaata ttgcattaag attttaaatc
     5941 ttactccatt tttgctaaaa ccttttatta tagcttttat tttacttttg gtttttgctt
     6001 ttatgccaga tggaattcct gattttattt attcgagttt ttagatgagt gtagttagat
     6061 ttttctttat tttgattata gtgcttggct tggttgttgt agttatgaat cagagtatta
     6121 gctcttatat agaacaaaaa tatcactttg cattctatcc tcataatgat cttttaaaag
     6181 aagccaatgg cttcaaaatt aaattagaac aaattcgtgc aattttaagc aacgaaccct
     6241 tgcctcaaac taatgaagaa actacaaatc aagaaaataa atcaatagat gaaaacttaa
     6301 gtaaaataga taaagttcta aacactttag aaaatgatga aaacacttct cataaagaaa
     6361 caaatccaac cttaatccaa gatgcaaata ttagttttat cgacaatacc aaattagaac
     6421 tacaaaatgg agatgagttt ttatttatcg gagattcttt aatgcaaggt gttgcaatag
     6481 ccttaaatag agatttaaga aatttaaatc ttaaggtaac cgatcttagc aaacaaaata
     6541 caggcctttc ttataaatcc tattttgatt ggtcaaaagc aaccaatgaa gcttttgtta
     6601 aaaactcaaa tattaaatat cttgttgttc ttcttggtgc taatgatcct tgggatatta
     6661 aaaaaggagg aagttatcat cgttttggct ccccttcttg gatagatatt tacacaagtc
     6721 gtgtagatga aatcattaag atcgctaaaa aacataaagc caaagttttt tggtttgaaa
     6781 tccctcctgt aaaaagagag gaactaaaca aaaaaataca aatacttaac aaaatttaca
     6841 gcgatgaaat tcttaaaaat aaagaaattt ttatcaacac taagctattt tttagcgtca
     6901 atgatcaata ctcagcttat ataaaagatg aaaacaatag aagtataaaa gtaagaacag
     6961 atgatggggt tcattttact ccaagtggcg caagagaaat gtctaaactt ttattagaac
     7021 acataaaact taaggaagaa aatgctagta aataaattta aaattatctt attgtttttt
     7081 attattttta ctagctctta tgcacaaaat ttaaatacaa atgacacaat agattccata
     7141 ctcaatcaaa acaaaaatca ctctgcttta acaagttatg tattaaaaaa agatcttaaa
     7201 aatctagaaa aaaaattaga aaaaaatcaa aacataggaa ttagaattta tggagattct
     7261 catatggcgg ctgatttctt tccgcgtgtc ataagaggat atttaatccg ttctaactct
     7321 ataggttttg cctatccttt acagcctaaa tatcaacaaa atcttaatct tgtttattct
     7381 tataaaaact ttgaaatttt aaactcaaga aatcctgcta atgctggaca taattttcca
     7441 ctaggtggga taatagccaa agcaaaaact aaaggcgcaa aaatcaacct tgatacaacc
     7501 ctagataaaa aaaaattcaa aataggattt ttatttaagg ccaagcaaaa taccaatgct
     7561 tttagcatca aagatgcaaa aaatcgaagc tatgagttaa gaactacaca aattaacaaa
     7621 tggtcttata aagaactaga acttgatctt cctttgcaaa tttcagcctt acaaaaggat
     7681 gctgaactag gaggatattt catcacaaat aaaaataata atgttttctt agataccatt
     7741 gcaatcaatg gtgccaaaag tgatttatgg ctctcttgga atcaagaagt tgtaaaaaaa
     7801 gaactagaac ttttacacaa tgatttaatt attcttgcct atggttctaa tgatgcactc
     7861 tttaaagggt ttgaaaaaca aaaatttaaa aacaatttaa aaaaatggat tagtatttta
     7921 aaaacttaca ataaaaacgc tgttatcatg ctaatctctc caccaactgt agttcaaaaa
     7981 caaggtaaaa actacaagct tgctcctgat ttttttacca tacgcaaagc attatatgaa
     8041 gttgctaaag aagaaaaaac tcttattttt gatatgcatc agtttatgca agatagtgga
     8101 ggaaaaaaca aatggataga acaaaagctt tcgctcaatg atgtacatct tactataaaa
     8161 ggctatgagc tgatggctaa aaagttactc gaggatttaa aaaatatcat cgattattaa
     8221 atttaatact taggaaattc taagttttca tcattaaaac ttaaagctgt gatttgatag
     8281 taagaattaa tggtttttaa aagattaaat ctagctctta gaaattcttg ctgggtagaa
     8341 tttaaagtat tgtttgcatc caaataatct tttaattcac tttttcctaa aatatatttt
     8401 tcataatacg ccttagtgat aagctcttgt ttaatgttaa tattttgcaa attttgtaaa
     8461 agcaaggtgt cgctttgata atctttataa ttcaatgcaa attcattcat cgcactttgc
     8521 aaggcttgct cataagaaat taaaagttgc tcataggtaa attgtgaaat tttgatattt
     8581 tgctttactc taccataatc taagaaaggt aaagaaatct taacattgcc acttaaaatt
     8641 tcaaatttaa aactatcatc gattttttta tcacttccgc ttaatgctcc acctaaagaa
     8701 atactaggca aaatagattt ttgcatggaa gaataatcct taaaggctga ttttaagcta
     8761 ttgagtttag atctcacatc tgcacggtac gctaaagctt ttaaaggtat attaaaatca
     8821 ggacttaagg ttttaaaatc atttaaagat aaagttttaa aatactctat ataagcaaaa
     8881 ccttcttgct ttgccaataa atcttgtaaa ttttttatga gtaaattacg attttgatca
     8941 ttgcctaata aattttgttt agctcttaat aagctttgtt ctatgtttaa aagatctaat
     9001 tcttctattt ttccaagctt gtatttataa ttataaagct cttccatttg ttctaaattt
     9061 gaaagataag ctcgaagcaa tttatctaca tcgttaaaat aagccagctc aaacacatca
     9121 tttaaagctg tattgatcat acttattttt aaattttcaa gatcataagc acttgctttt
     9181 gcactaaatt cactcgcact tgcactatct cttaatttgc cataaatatc aagctcatag
     9241 cttaaattta aagaattatt gaaattttta ctttgtttgc ctgaatttaa atctttatcc
     9301 gcaccaaaac ccaaatttcc acttaaagtc ggatataaat cataatcaat caaatcagct
     9361 ctagccaaag ccgaaagcaa agtttttcta gcaatattaa tatcactatt attcaataaa
     9421 acaaaattta gaaattcatt taattttgca ttatcataag atctatacca atcataagta
     9481 agatttaaat ctttcatttg ttcttgagtt aaatcaactt ctttaggcaa gctaagtttt
     9541 acaccacaag cgctcaagaa aaatgctaaa aaaatgctaa gtattatttt cattttattc
     9601 ctttgataat gcactaatag gatttaaatt tgctgcattt cttgcaggga aaaaaccaaa
     9661 aaccacaccg ataaacatag aacttaaaag tcccaaaagc acagaatagg catttaaaat
     9721 cataggaaaa tccgtactta aagtattaaa agcaaaaata acaaaaatcg ataaaatcac
     9781 acctaaaatc gcccctatag tacaaatcat aaccgcttcg attaaaaact gcatcataat
     9841 atcttctctt ctagccccta tagccatgcg tatgcctatt tctcttgttc tttcacttac
     9901 agaaacaagc atgatattca tcactcctat acccccaaca atcaaagcaa tcacagccac
     9961 acaagcggta agtatggttg tagtgcgttt atttgctgta atagcttgct taaaagtgtc
    10021 agaattaaaa gtaaaaaaat ccttttgtcc gcgtttaatt tctaaaattc ttataatagc
    10081 attttcagcc aaagttgaac tcacatcatc tttaacctta actatgattt cacgcaaatt
    10141 tctatctcct gtaagcttat tcatcagtgt tgtatagggt atataaagac gtactacatt
    10201 atcttctata ggcttgtctg tatctttttg caaaactcct ataatcttaa aaggttgaga
    10261 attaaaaagc accacacgac ctaaaatatt ttcacttttt tcatcaggaa aaagattttt
    10321 tttagcatta aaatccaata cagcaacatt ggtactattt tttacatcat cattatttaa
    10381 aattcttccc gcatctatcc ttaaaccttc tatagcaaaa ttatttaccc ctactccttc
    10441 agctcttgcg cttaaagaaa tattggtata agttgccact cctgaagtat ttgaatgagc
    10501 atcaactgct tctaaatatt ctaaagatct tagcgtttct aaatcactaa aattaagcct
    10561 tgttttaccc gaacgcaaat ccccaaatcc ttttccaggg cgaatttcaa tagtatttgt
    10621 cccaagtctt gcaatagact caagcacttt agcttgagag cctaatccta aagctacaac
    10681 acaaactaca gaagcaatac ctatgatgat tccaagcata gttaaaatag aacgaagttt
    10741 gtgtgcaagt atggaagaat aagctatctt aaaacattca aaggcttgat ttttaagcaa
    10801 agtaaatgtt tttttctctt tagacattgt ttttaaagtg agtttttctt gagctttttc
    10861 ctttttagta tcgcttaaaa tttctccatc tttaatctct ataacccttt tagcctgtgc
    10921 tgcgattttt ggatcgtgag ttactaagac tatagtatga ccttgtgtgt taagtttttg
    10981 taaaatttca agcaccataa taccactttt actatccaaa gctcccgttg gttcatcagc
    11041 taaaataagc tctccgccat tgattaaagc tctcgctata gaaacgcgtt gttgctgccc
    11101 tccgcttaat tcgtttggct tagaatctaa cttgtgagct aattctaaat catttaagag
    11161 ttttttagca ttttgacttc tttcttgtaa attttttccc gcataaactg caggtaaaga
    11221 aacattttct ttagcactca gcaagcttaa aagattgtat ctttgaaata taaagcctat
    11281 tttttcacgc cttaatcttg ctttttcatc attattaagt ttagtgactt catactcatc
    11341 aaaaacataa gttccactac ttggcgtatc taatgttcct atgatattca aaagtgaagt
    11401 tttaccactt ccactttgtc ctataatagc aacaaattca cctttttcta tacttaaact
    11461 tacatttttt aaaatggcat tttcgcctat atttttgcaa atatttttaa gaaaaatcat
    11521 taaaatctca acttcatttt aggagctaag ccatcagcac ttgagcttac tatcaattct
    11581 tcatcttcat ttacaccttc taaaatttga gtattgatag aatctttaat gccaagtttg
    11641 acatattttt taacagcttt ttgattttcc aaaatttcaa cataatagcc ttttggatcg
    11701 cttttaattg cataagttgg cactgctaaa acagcctttg cacttgctac gacaatttca
    11761 ttttgtatac tcataccaat acgcaaaaaa tcatctttat tggctacata aaattttgcg
    11821 taataataaa tagcatttga tgagcttgag cttgaagaac tcgaacttga tgagcttgag
    11881 cttgtactag aatcactcac ttcagtatca gctggatcta tacttgcaat cttagcatga
    11941 taagtttttt gaggatcatt aagcaaagaa aaatcaagct ctgttcctac ttttatctta
    12001 ctcacatcag cctctgctat ttccattctt acttccattt cgtctaaatt agctatacgg
    12061 actatagtag gagtgttttg attagcatta actgtttgtc cttcatctac agctacatta
    12121 atcacaacac catccatagg agcagtaatg gttgtataac ctaaatcttt ttgtgcattt
    12181 ttaagagtga tttcaagctg aactacttga gcattaagct ctgcaacatt ggcttttaaa
    12241 gtataataat tatttttttg agtttctaaa ttttcaagag aacttgcttt agctgcataa
    12301 agtttttgct ctctttgata ttgcttattc gcaatctcaa gggcaacttt tttactctct
    12361 aaattagcct tagcactttc aagctgagct tttgtaatat ctaaatcgtt ttgttgttta
    12421 tctttatcaa tttgagcgat caaatcacct tgctttacat gagttcccac atcaacataa
    12481 agttttataa tttgtccact aacttgagca cccacatcga cttgatcttt ggcatatacc
    12541 tttcctactg cctctatggt ttgagatata tctttttttt gtattttttg agttaaatag
    12601 ctgatttttt catcattatt aaaaaaaata aaataagccc caacacttcc aagtattgca
    12661 attaaaatga ttaaaacaat cttctttttc ataataacaa atcctaaaga aaaatcaaga
    12721 ttaaatttta ctcatttttt gtgaattttt tgtgaatttt taattctatt ttataaattt
    12781 aaaaattcta aagccatcat cacatcaccc tgcattaaaa cttttaaatt ttcatcatcc
    12841 caacaaaaag tagaactatg atgcaaagct ggatgattta aatcctttga aattccaaca
    12901 aatacataag cccccattct ttctcgtgtt aaaaaagcaa aatcttcagc ccccatgtca
    12961 ggtttagaag aaacaatgat attttcttct cctaagacct ttgcaaaagc ttttcttgct
    13021 attaaaacag ctttttcatc attaatcaat ggaggaaatt ctttagtata tttaagctta
    13081 taatctccgc cattggattt tgctgtagca gcagccactt cttctaaaga actttttaaa
    13141 atatcttgcg ttttatcatt taaaaagcgc acagttcctt ttaaataagc atttgtagga
    13201 ataacattat aagtagttcc tgcacaaatt tgacctacgg taatcacccc tgcttcataa
    13261 ggggctaaac gtctagaaat aacactttgt atattattta caaattgcgt tgtcataatt
    13321 ataggatcta tacaagtgtg cggatgagct ccatgccctc ctctgccaat aaattccaaa
    13381 tcaaaaatat ccgttccagc catcatttca ccacttacaa tttgagcagt attttcaagc
    13441 aaaggccccc ataaatgaca accaaaaact gcatcaacat aaggattttc caatacacct
    13501 gattctatca taggtttagc tccaccgctt ccctcttctg cgggctgaaa cataaattta
    13561 atcgtgccac aaaattcatc tttaagctca tttaatatca aagcagctcc caaaagccct
    13621 gctgtatgtc catcatgtcc acatgcatgc atcttaccat caatttttga agcatagctt
    13681 agattagttt tttcttgcac aggcaaagca tccatatccg ctcttaaaag aacacatttt
    13741 ggttttttct gactcttctt ttttccttct ataatagcta aaattcctgt ttttgcaata
    13801 tttttttgat atttaatgcc aaactcatct aaaattttac acactaaatg ggctgtattt
    13861 tcttcttcaa attcaagctc aggatgcata tgaatttgat gtcttaaatc aactacttta
    13921 tcatagtact ttagtgctaa attttcaacc agcttttgca ttcttttcct taatctaaat
    13981 cttttatttt ctcatctgct tttttactgt caagtttttc caaattcgcc tccatttttc
    14041 gtatttcttc ttctccacta cgcactaatt ttgcatcaat tttggaaaaa tctccagttt
    14101 ttttatttgg atattctacc ttagaaagta taaaacgcaa taaatttaat cttgcttttt
    14161 tcttatcatc agaagaaata atagtccaag gacaagttgg agtattagat gctaaaagca
    14221 tagagtattt agctaaagta tatttatccc ataattcttg cgatttttga tccacaggag
    14281 ataatttata ttgtttaagt ggatcgcttc ggcgtttttc aaaacgtttt tttgctcgtc
    14341 ttttgatact gaaaaataaa atttaaaaaa aataatatca ctatttgaaa tcatattttc
    14401 aaacaaaggc acttctctta aaaaatcttt atgttgttgc ggtgtacaaa aacccataac
    14461 cggttctact cctgcacgat tataccaaga tctgtcaaaa atcacaatct caccggctga
    14521 gggcaaatgt gctatataac gctgaaaata ccactgtgtt ttttccacat cactaggttt
    14581 ttcaagagcc acaacgcggc aaccacgcgg atttaaatgc tcaatcaaac atttaatcgc
    14641 cccacctttt ccagccgcat cacgcccttc tataagtata agaaccttta aacccttggc
    14701 tttaacatga ttttgaaatt tcaaaagctc aatttgcaaa ttctttaaat ctttttcata
    14761 cttctattat acttttcttt cttttaacag aaacataaat ttcattcttt ttaacaaccg
    14821 cttgcgtttt tggagaatta ttttcttgca ttttcaaacc tttataaagt atttaaagtg
    14881 aatttaccat aataaattat aattgaagct aaaaataaag gaaaaaataa gtttttagga
    14941 aatttatgcg tatttttggt attattttat taagtttttg tttatgtttt gcttctatat
    15001 tatctttaaa tgaagctttt aatgtaaaat caaactctta taataactct atctcaattg
    15061 atattgaact tggaaaagat atttatcttt attctaataa acttaaatta tatataaacg
    15121 aaaaagatat aagttctttg attaatctac ctcaaagttc tacaagaggt aatgaaaatg
    15181 tttattatca aaaattaaat ttagctttgc caaatttatt actagagcgc tttgcaaaaa
    15241 ataccacaaa tttaatcaaa ctcgaatttc aaggctgttc tgaacaaggc ttgtgttata
    15301 atcctcaaac ttggtacttt gatctcattt ctaaaaaaga tgcttttgaa atttcaaaac
    15361 cttacaaagc tcaaaaaaca gataaaaaaa ctaaaattga atctgaagaa agctctatag
    15421 caaatttttt agcaacagat aacttttttt ggattttgct aagttttttt ggctatggac
    15481 ttttactctc cttaacacct tgtattttac ctatgattcc gattttatct tctcttatcg
    15541 tagcaaaaag taatgctaaa ttttcaaaaa aatatagttt ttttctctct cttatctatg
    15601 tttttttcat gtctttagcc tatgctattg ctggagttat agcaagtttt ctaggagcaa
    15661 gtattcaagg aattttacaa aaacctatta ttttaattct ttttgctcta attttcatag
    15721 cttttgcttt tgctatgttt ggagcttttc gttttgaatt gccattaaga tttcaaacct
    15781 ttatacataa aaaaagcgaa aaagggaaag gagttttagg tatagccatc atgggatttt
    15841 tatctgcttt aatagtaggt ccttgcgtag cagctccttt agcaggtgct ttaatttata
    15901 tagccaatac aggcaatgct ttattaggtg gtagtgcgct ttttatcatg agttttggca
    15961 tgggtatacc tttgcttttc ataggcttag gattaggttt tattaaacct ggtttttgga
    16021 tggaaaaagt aaaaattttc tttggttttg ttatgttggc tatggctatt tggatacttt
    16081 ctagaattat tgaagaaaat tacattttaa ttgcctatgg aattttaggt gtatttttta
    16141 gtgtttttat gggaattttt gaaaaaagtt ttacaataat ttctaaaatt aaaaaaagta
    16201 ttttaattct tattttagct tattctctaa gtattttcct aggaggactt tttggggcta
    16261 aaaatttctt aaatccttta aatttcaata ctatatctgc ctcaaaacat gctttaagct
    16321 atgattatat caacaatttt gaacaattaa agcaagaaat acaaacaaat acaaagccta
    16381 taatgcttga ttttactgca tcttggtgtg aaaattgcaa acttttagat gaattaacct
    16441 ttagcgatga aagaatcata caaaaaatgc aaaattacaa acttatcaaa gttgatgtaa
    16501 gcgaaaataa taatgaacaa attaaaacca tgaaagaatt taatgttttt ggcccacctg
    16561 ttttaatttt ctttgaaaat ggaaaagaaa aattaaaaat cacgggtttt atcagtgctg
    16621 atgatttatt aaaaaaaata gaaccatgaa aattcaaagt ttgcaaatag ggaaaattaa
    16681 aaactataaa aatttccaaa gcgcatttat taaagatact tacctagaag aaacacaaat
    16741 tgattttcta ggtgttttag atgatcaaat agctgataaa attcatcatg gaggctacca
    16801 taaggctatt tttgccaact cttgtcaaaa ctatcccata tgggaaagat ttcttaataa
    16861 aaagctaaat tttggctcaa tgggtgaaaa tttgagcatc gatgggcttt gcgaacaaaa
    16921 tgtttgcata ggtgatgtac atcaaatttc aaatgcaata ctgcaagtaa gcgaacctag
    16981 aaaaccttgt gtaaaaattt ctagaattca caataattca aattttacac atgaaatttt
    17041 taaaacgggc ttgagtggat ggtattataa agttttacaa gttggacaaa tacgaaagca
    17101 tgaaaacatt aaaattttag aaaaaaattc tacttcactt agtgtatttg aactcaatca
    17161 acttttttac tccccgcatc aaattcttaa gcaaaatccg aatttattag ataaattaga
    17221 aaaattaaac tctctcatat ctcaaaattg gcacgaaacg atacacaaac gcttaaaaaa
    17281 tacttacgat ataagctata tggatagctt ataagttttt aaagttattt ttaggtaaaa
    17341 taattctttt tcgaaaggat aatcatgcaa agacaaacat ggagtagcac actaacttat
    17401 attctaacag ttgctggagc aaccatagga tttggagcaa cttggcgttt tccctatctt
    17461 gtaggagaaa atggtggcgg tgcttatgta ttagtttttt gtatagctat gattatcata
    17521 ggcattcctg ttattttagt tgaaaatatc ataggcagaa aagcgatgac aaatagcgta
    17581 gatgctttca aacaaaaatg gcaaagtatt ggatatatgg gacttttagg aagctttggc
    17641 ataatggctt actacatggt acttggagga tgggttttag tttatatttg ggaattaacc
    17701 ctagggaatt ttagtcttgc caatgtagta agcaaagaat ttactcatca gttttttaac
    17761 gacaaaatag ccttcaatcc tttaggagtt ggtattttta ccactgtttt tgtaattatt
    17821 aattatatta ttttaaaaag aggcattata gatggtatag aaaaatccgt aaaattttta
    17881 atgcctttat tatttatctg tcttattatt gttgtaggac gcaatttaac ccttgatgga
    17941 gctatggctg gagttaaatt ttatcttgaa cctgatttta gtaaaatttt atcaccaaaa
    18001 cttttaatcg atgttttagg acaagtcttt tttgctttat ccctaggttt tggggtaatg
    18061 ataacacttt catctcatct taataaaaat gaaaatatgg caaaaaccgc tatttataca
    18121 ggggttttaa atactatcat agctgttttg gctggtttta tgatttttcc agcacttttc
    18181 tcagcgggac ttgctccaga tagcgggcct tctttggttt ttgaaacttt acctatagca
    18241 ttttctcata tccattttgg caccattgtg tgtattttat tttttatctt actcttgatt
    18301 gcagctttaa ccacaagctt gccaatttat caagttatta ttagcgtatt agaagaaaaa
    18361 tttaaatatt ctaaaaatct ttctattaac ctaactctag ggtttatctt catacttggc
    18421 aatcttccct gtattctaac ttatgggcct tggcgtgata ttgttatcat caaaggaaaa
    18481 aacatttttg atagttttga tttcattagt ggaaatattt tgtttgtttt aactgcattt
    18541 ttttgctgca tttatgtagg ttggatttta ggtaaacaag aaagtctaaa agaacttagc
    18601 aataacaata cacttaaaag ttcatggttt ggaatttggt tttattatgt aaaatatata
    18661 gtgcctttga ttattttaat catttttatc tatggaattt taaa
//
LOCUS       DARGEY010000019        18535 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.019, whole genome shotgun sequence.
ACCESSION   DARGEY010000019 DARGEY010000000
VERSION     DARGEY010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18535
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.019"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(107..4660)
                     /gene="rpoC"
                     /locus_tag="SF008_000600"
     CDS             complement(107..4660)
                     /gene="rpoC"
                     /locus_tag="SF008_000600"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEG8232896.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMGAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIVKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEGKNI
                     VANRRNAAVLLVEPKIKTPFKGVINIENIHEDVIVSIKDKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILVEDGEPVVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYHLEPKTVIFVHDGDKIAQAD
                     ILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(4653..8789)
                     /gene="rpoB"
                     /locus_tag="SF008_000601"
     CDS             complement(4653..8789)
                     /gene="rpoB"
                     /locus_tag="SF008_000601"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEG8232897.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLVGLRLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLANEKEFIKSLSDEELLNYA
                     RDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(8898..9275)
                     /gene="rplL"
                     /locus_tag="SF008_000602"
     CDS             complement(8898..9275)
                     /gene="rplL"
                     /locus_tag="SF008_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEG8232898.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMIAGGA
                     AAGGAAAAAEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(9296..9775)
                     /locus_tag="SF008_000603"
     CDS             complement(9296..9775)
                     /locus_tag="SF008_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEG8232899.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLGVSKVAAKFEENNDKFE
                     IKTAHIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(9927..10628)
                     /locus_tag="SF008_000604"
     CDS             complement(9927..10628)
                     /locus_tag="SF008_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEG8232900.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(10684..11109)
                     /gene="rplK"
                     /locus_tag="SF008_000605"
     CDS             complement(10684..11109)
                     /gene="rplK"
                     /locus_tag="SF008_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEG8232901.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(11135..11668)
                     /gene="nusG"
                     /locus_tag="SF008_000606"
     CDS             complement(11135..11668)
                     /gene="nusG"
                     /locus_tag="SF008_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEG8232902.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(11678..11857)
                     /gene="secE"
                     /locus_tag="SF008_000607"
     CDS             complement(11678..11857)
                     /gene="secE"
                     /locus_tag="SF008_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEG8232903.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVVVISLFL
                     ALVDWLMSSIVSAIV"
     gene            complement(11876..11951)
                     /locus_tag="SF008_000608"
     tRNA            complement(11876..11951)
                     /locus_tag="SF008_000608"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11916..11918),aa:Trp,seq:cca)
     gene            complement(11964..12122)
                     /gene="rpmG"
                     /locus_tag="SF008_000609"
     CDS             complement(11964..12122)
                     /gene="rpmG"
                     /locus_tag="SF008_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEG8232904.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(12175..13374)
                     /gene="tuf"
                     /locus_tag="SF008_000610"
     CDS             complement(12175..13374)
                     /gene="tuf"
                     /locus_tag="SF008_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEG8232905.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(13443..13517)
                     /locus_tag="SF008_000611"
     tRNA            complement(13443..13517)
                     /locus_tag="SF008_000611"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13483..13485),aa:Thr,seq:ggt)
     gene            complement(13622..13698)
                     /locus_tag="SF008_000612"
     tRNA            complement(13622..13698)
                     /locus_tag="SF008_000612"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13662..13664),aa:Gly,seq:tcc)
     gene            complement(13705..13790)
                     /locus_tag="SF008_000613"
     tRNA            complement(13705..13790)
                     /locus_tag="SF008_000613"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13754..13756),aa:Tyr,seq:gta)
     gene            complement(13840..13915)
                     /locus_tag="SF008_000614"
     tRNA            complement(13840..13915)
                     /locus_tag="SF008_000614"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13880..13882),aa:Thr,seq:tgt)
     gene            complement(14031..14768)
                     /locus_tag="SF008_000615"
     CDS             complement(14031..14768)
                     /locus_tag="SF008_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG8232906.1"
                     /translation="MSILKIENLQKYYGSHHALKDINLEVKDKEVVVILGPSGCGKST
                     LLRCINGLEEIASGNIYIDNEKIDKDFKEWPRMRQKVGMVFQSYELFEHLSVEENILL
                     GPMKVQKRKKDKVLQEAKIWLEKVGLLHKIHAYPRELSGGQKQRIAIVRSLCMNPELM
                     LFDEVTAALDPEIVREVLEVMLNLAKEGMTMLIVTHEMGFAKAVADKIIFMDEGKIIE
                     ENDPKSFFKNPKSERAKKFLNLFDYHK"
     gene            complement(14770..15426)
                     /locus_tag="SF008_000616"
     CDS             complement(14770..15426)
                     /locus_tag="SF008_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8232907.1"
                     /translation="MLELLNTDTLLRLWQGLFVTLEISFISTIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWFFVVYFGFPRWFGWDLSSVSVAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFAYVIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(15419..16120)
                     /locus_tag="SF008_000617"
     CDS             complement(15419..16120)
                     /locus_tag="SF008_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8232908.1"
                     /translation="MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYF
                     KIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFNIHLEQIPPLNLICLSVEETLRP
                     SFACAIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
                     SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILP
                     LSFILLKFEKRLLYA"
     gene            complement(16135..16731)
                     /gene="nssR"
                     /locus_tag="SF008_000618"
     CDS             complement(16135..16731)
                     /gene="nssR"
                     /locus_tag="SF008_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HEG8232909.1"
                     /translation="MKDYLELLSSVGKLKKFQKNSILFYEGEEAKKFFILLKGKIRIY
                     KSTSSDKEITLHYFNPPNFIAEMPAFKKLNYPANAIFEEDGEILEIDFINFQNLCSEN
                     KEFNFLLISSLFDKIKILEKKLSQNALDLRTRLLKYLLENEKKLDTISQKQIAIDLNV
                     RAQSLSRVLKELKISELIDTKKGKIEILNKDMIIKELW"
     gene            16827..17210
                     /gene="ctb"
                     /locus_tag="SF008_000619"
     CDS             16827..17210
                     /gene="ctb"
                     /locus_tag="SF008_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HEG8232910.1"
                     /translation="MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWK
                     EHKAKIGNFWTGMLLGEGDYNGQPLKKHLDLPPFPQEFFEVWLGLFEESLNIVYNEEM
                     KTVILQRAQMIASHFQNMLYKYGGH"
     gene            complement(17207..>18535)
                     /gene="recG"
                     /locus_tag="SF008_000620"
     CDS             complement(17207..>18535)
                     /gene="recG"
                     /locus_tag="SF008_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEG8232911.1"
                     /translation="HAYDEKSFFMFENLQNFSKDLKYIEIYNFLKRLKAKKTHFKAHQ
                     INVFNIANWLKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAA
                     LMVYPKQAILMAPTSILAHQLYEEAKKFLPDFMNILFIKGGKKEKDLEQNIQKANLII
                     GTHALIHLESHNAVLVMIDEQHRFGSAQREKIHSLSKQEFAPHFIQFSATPIPRTLSM
                     IQSELLNFSFIKQMPFKKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLVSASD
                     NIPYLSLEQAKEYWQSHYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISLP
                     RLSMIVIVGAERLGLATLHQLRGRVGRVGLKSTCYLYTKLKEIPSRLKEFASTLDGFK
                     IAELDLKNRLSGDLLDGFMQHGNEFKFFDFSKDEEILEKVKKDLAKKMPN"
BASE COUNT         5878 a         3689 c         2465 g         6503 t
ORIGIN      
        1 aatacttcta gaagaaaaaa ataaaataga aaaagtttta aaaatttatt ttaatgattt
       61 agatacactg tattaatata gccccgaagg gctataaaat agagttttat tcttgttctt
      121 taagttttaa attttgttcg ccataaagcc ctgttccaac aggaatcatt ctacctagaa
      181 taacattttc ttttaaatct tctaagtagt caaatttacc tgctatactt gcttcagtta
      241 aaactttggt agtttcttgg aatgaagccg cagaaatcac actatcactt ccaatcgctg
      301 ctcttgttac acctaaaagc acaggctcgg caatagctgg ttctccaccc attctaatga
      361 ttctttcatt ttcttcacgg aatttacgtc ttgaaaccaa atcaccttca ataaatttcg
      421 tatgtccact atctacaact tttacttgtc ttagcatttg agaaacgata acttctatat
      481 gtttatcaga aatcacaaca ccttgtccgc gataaacttg ctgaatttca gaaatcaaat
      541 aataatgcaa ggctttttca cctaaaattt taagcacatc atgactcgaa acaactccat
      601 ctgtaagttt ttcacctgca tgaataaact ctccatctct tacttgaata tgttttgatt
      661 tgtcgattaa atactcagca cttgttccat cttctgcttg gataataatt ctttctttag
      721 aacgcaaagg cttatcaaaa cgaacaacac catcaatttc tgcaatcaca gccgcatttt
      781 ttggttttct tgcttcaaaa agttcagaaa ctcttggaag acctcctgta atatcctttg
      841 atttagctgc tgcttttgga gtttttgcta aaatatctgc ttgagcaatt ttatcgccat
      901 catgaacaaa aataacggtt tttggttcaa ggtgataacg cacagcttta tcaccttttc
      961 ctgcaattac caaagttggt ctaactccgc taggtaaata ctcattaatt actaaagaac
     1021 gcttacctgt agcttcatca atttgctcat cagcactata acctgcttca atatcctcaa
     1081 agcttacaac accatcaatt tctgcaatga tagtattatt ataagcatcc cattctgcaa
     1141 tcacttttct ttctttttta ggagcacttg caatgatagt atttgcgtca tcgatttttt
     1201 cactatcgtt aaattctatc ttagattctc ttgggatata gtgtcttttt gcttctctat
     1261 cattttcatc agcaatcact acaaagaatc ctttttcttt aacaatatca ccttttttaa
     1321 cattttttac tctatctaaa ccatcgcctt taaggatgta aaatttgagt gttccttttt
     1381 cgcctgcttt gatattttga actacaggct cgccatcttc tactaaaatt tcactcgcaa
     1441 aaggaatacg atttggtaca ttccaaccct ctttaatcac ttctacgata ctttcatttt
     1501 cttctacttg catgccgctt tgatatggca aataaagttt tccatctata ctgccactta
     1561 cacctgctaa ttcatttggt ttagcaagat cgtattttct taatatgtat tttacttctt
     1621 gttttttatc tttaatagaa acaatcacat cttcatgaat attttctata ttaatcacac
     1681 ctttaaatgg agttttgatt tttggctcca caagtaaaac cgccgcattt ctacgatttg
     1741 ctacgatatt tttaccttct ttgtttttat aagttttaag attataaaat cttataaaac
     1801 cttctttttg tgcgcttact tgtctatctt gtaaatccgt acttgcagtt cccccgctat
     1861 ggaaagttct tagagttagc tgcgttcctg gttcaccgat agattgagcg gaaataattc
     1921 ccactgcttc gcctggtttt actaatttac cttcaccaag attgatacca taacattttg
     1981 cacaaattcc ttttttagct ttgcaggtaa taggagtgcg gatattgaca ctttttatac
     2041 cgctttcgcc aagaattttt gctttttcct catccattaa agtaccttct gcaaaaagca
     2101 cagaatttgt aataggatca atcacatcct cagctaaaac cctgcctaaa attctttctt
     2161 ctaaagtttc tataatagaa ctatctgcgg taatttcatt gatttcaaca ccctcatgtg
     2221 ttccacaatc ttcaatggta atttttacat tttgtgcaac atcgatgagt tttcttgtca
     2281 aataacccgc atttgctgtt ttaagagcgg tatctgcaag accttttcta gcaccgtgag
     2341 ttgaaataaa gtattcaaga acatttagcc cttcacggaa atttgaaata ataggcgttt
     2401 cgataataga accatcaggt ttggtcataa gtcctctcat cgcagcaagc tgagaaattt
     2461 gagctgcact acccctagca ccagaatctg ccatcatata aatagagtta aaaccttctt
     2521 tatctttttc tacaagcttc atcatttctt ttgaaagaac attgtttgta cttttccaaa
     2581 tatcaatgat tttattgtat ctttcccctg aagtaatcaa accgagatta taagaatttt
     2641 gaatttctct tacttgtttt tttgcttcat cgatagcttt ttgtttatca ttaggaacaa
     2701 taatatctgc aatcgaaatt gaaatacctg ctttagttgc atattcaaaa cctaaatttt
     2761 taagtctatc caagaaactt gctgtaatct ctaaaccacc ttgtttataa acataatcca
     2821 caagcgcagc aatgtctttt ttctttaaga ctttattcca actattttca ggcacaaaat
     2881 caggcaagat ggatttaaca atcaatcttc ctgctgtagt ggtaatcttt ctaccatcta
     2941 ccatagtttg tatgctcgca tgaatatcca aacacttgct ttcaagtgcc atcatcactt
     3001 catcaatgcc tgtacaaatt ttatgcgaac ctttagcacc tgctttttcc aacgaaagat
     3061 aataaattcc taaaaccata tcttgcgatg gaacggttac agacttaccg cttgctggta
     3121 aaagaatatt cattgatgaa agcataagca ctttacattc tgcaatagcc tcttgagaaa
     3181 gcggtacatg cactgccatt tgatccccat caaagtctgc gttaaatgct gcacaaacca
     3241 aaggatgaag ttgtatagcc ttaccttcca ctaaaacagg atgaaaagct tggatagaaa
     3301 gcttatgcaa agtaggtgca cggtttagca taacaggatg tccctttact acctcttcta
     3361 aacattccca aacttcattg gttttatttt ctatcatttt tttagcttgt tttactgtgg
     3421 ttgcataacc tttttcttca agcttagcta aaagatgtgg cttaaaaagc tctaaagcca
     3481 tttttttagg taaaccgcat tgatccattc taagttttgg acctacaaca ataacgctac
     3541 gacctgagaa atccaccctt ttacctagta gattttgtct aaaacgtcct tgtttccctt
     3601 tgatgatttc acttaaagat ttcaatgggc gtttatttgc tccttttaca gcattagcac
     3661 gacgaccgtt gtcaaaaagc gcatcaacag cctcttgaag cattcttttt tcatttctga
     3721 taatgatttc aggtgcatca agttccataa gttttttaag acgtgtattt ctattgataa
     3781 cacgacgata taagtcattc acatcagaaa ctgcaaattt cccaccatct aaagccacta
     3841 aaggacgcaa atctggcggt aaaactggaa gatttgtaat catcatccat tcaggacgat
     3901 ttggtacagc ttcgtcgcta tcggtattgg cgtttaaatt tgaatttaag aaattttcta
     3961 caacttttaa gcgtttaatg atagtttttt tcttagcctc tgaatttgta gcccccattt
     4021 cttctttaag ttgatttaaa agcgctacaa gatctaaatt tgcaagtaaa tcacgaacaa
     4081 cttctccacc cattcttgct ttaaagccgc tattttcata gcgttgcatt aaattttgat
     4141 attgctcttc gttcaaaaca tcgcaatatt ccactttttt agtactttca ttatcataga
     4201 aagcatcacc tgggttttca acaatataag cttcataata aagcacgcgc tcaagatctt
     4261 tcatcttaac acccaaaagc gttcctatac ggcttggaag agaattaaca taccaaatat
     4321 gagccacagg agttacaagc tcgatatgcc ccattctaga acgacgcact tttgaatttg
     4381 ctacttcaac accacatttt tcacacttaa cgcctttaaa acgcattttt ttgtatttac
     4441 cgcaaagaca ctcataatct cttataggtc caaaaatctt tgcacaaaaa agcccatctc
     4501 tttcaggctt taaggttcta taattaatag tttctggttt ttttacttct ccataagacc
     4561 atgatttgat tttttcagga cttgcaagtc tcagttgaaa tgcttcaaaa tctctaggtc
     4621 ttgcatcttc tttaatttct attactttaa atttactcat tatcttcatc cttatcaaaa
     4681 atctcaacat ctaaagcaag agatttaagc tcattggtta atacaaaaaa tgtttcagga
     4741 attcctgttg ctggaacatt ttcacctttt gtcaatgctt tataagcact aaatctacct
     4801 tctacatcat ctgattttat ggttaacatt tctcttaaag tgtgagccgc tccataagct
     4861 tcaagtgccc aaacttccat ttctccaaat ctttgtcccc caaagagtgc tttaccaccc
     4921 acaggttgtt gggtaaccaa gctataaggt cctgtacttc ttgcatgaac tttttcatca
     4981 accaagtgat ggagttttag catatacata catcctacat gaacacgctc tgcaattttt
     5041 tcccctgttc gtccatcgta aagttctgtt ttgccatcca tatctatctt agccatttta
     5101 aaaagcttgc taaattcttc tatatttaca ccttcaaaaa caggagtaga aaatttaact
     5161 cctttactcc agtctctagc atagtttaaa agctcttcat cgcttaagct tttaataaat
     5221 tctttttcgt ttgcaagtct tggaatagaa caaatttcaa gcattttcgc tcttaattct
     5281 ttaagaaaat ctttttgctt tctatcaaaa atttcttgaa tttgatcccc aagtctaagt
     5341 ccaactaaac ctaaatgact ttctaaaatt tgacctatat tcatacgact tggaacgcca
     5401 agtggattaa gcgcaatatc cacgctctta ccatttggca aataaggcat atctacttca
     5461 ggaactatag ttgaaactat acctttattt ccatgacgtc ctgccatttt atcaccgact
     5521 ttaagctttc tttttgtagc aatataaact ttaacaagct taattacccc acttggtaaa
     5581 atatcatctt tttctaaaat ttcaagcttt tcatcgtgtt ctgcttttaa ttttttcttc
     5641 tcattttgga aatgattttt taaatcatcg tattcttttt gaatctcttt agaataagct
     5701 ttaatcaaag ttgttaaagt aaaacgattg attttttcaa gttcgctaat atctgcagtt
     5761 tgtccttttt tataattttt atctccaatt ttttgatcgc tatttaaaga ggctttggaa
     5821 agaagagcac aaacacgaag catttcttct ctatccatca tcaaaagtct atcatgatgc
     5881 tctttttcta aagccatttt ttctttatca taagatttta ttgcgcgatc atctttttca
     5941 tagccttttt tagtgaaaat tttaacatcc acaacaacac cctctaaaga agcggttgca
     6001 taaagggatt tattcacaac atgtcctgct ttttctccaa aaatcgctct taaaagtctt
     6061 tcttcaggag ttggtttaac ctcacctttt ggagaaacct tacccaccaa aatcatacct
     6121 ggtttgatat gggtaccaat ttttgcaata ccgctctcat caagatgcgc aacatcttct
     6181 tcttttacat ttggaatatc tttggtaatt tcttctatac cgtcttttag ttctcttgct
     6241 tcaatttctt tttcataaat gtgcacgctt gtaaaagtat cttcacgaat aattctctca
     6301 cttacaacta tagcatcctc atagttataa ccattccaag gcataaaagc gattaaagca
     6361 tttttaccta tagcaagttc gccttgatcc atagaaggac catctgcgat aatttgtcct
     6421 gcttttacta tatcaccttt tttaacaata gggtgttgaa tataatttgt attttgattg
     6481 gttcttaaat ttttctccat agtgtaatgg tcaataaatg gacctttatc atcttcacct
     6541 aaaatgaaaa tgcttttatt atccactttc tcaaccacac cgccacgctt tgctttaaca
     6601 gcttcccaag catcacgcgc aataatttgt tccatacctg ttcctactat cggagctgaa
     6661 gcagtaagaa gtggcacagc ttgacgttgc atgtttgaac ccattagtgc tctgtttgca
     6721 tcatcgtgct ctaaaaacgg aatcaaagaa gccgcaaccc caacaaccat acctgagcaa
     6781 agatcgatta attgcacttc ttcgcgtctt gcaagtatag tttcaccatc ttgtctagcc
     6841 tcaacaaatt cttctactat attgccttta gcatcaacct tagttgaagc tggtgcgata
     6901 aataagcctt cttcttgtgt tgctgtaaga taaacaactt cattagtcac tttaccattt
     6961 acaacttttc tatatggtgc ttcaacaaag ccaagttcgt ttacttttgc ataagtagaa
     7021 agagtgttaa tcaaaccaat attttgacct tcaggtgttt caactggaca aattctacca
     7081 taatgtgtcg cgtgaacatc acgcacttca aaacctgctc tttcttttac aagtccacct
     7141 tcaccaagcg ctgataaacg acgcttatga gtaacctcgc ttaaagggtt ggtttgatcc
     7201 ataaattgcg aaagctgacc tcctgtaaaa aattcaatga tagttgtagt aatcatttta
     7261 ggattgatta aatcataagg cattacttta tcaagatccg catttaaaga agtaaattta
     7321 tctctgatcg ccttttgcat ttttgcaaga cctaaatgaa gttcattggc taaaagttca
     7381 cctatagaac ggatacgacg atttcctaaa tgatctctat catcaatatg tcctttacca
     7441 ttttttactt taattaaata ttttgcagtt ttaataatat cttcattagt caaaacagta
     7501 acatactcag gtacttcaag acctaattta tggttcattt tcatacgacc taccttggta
     7561 agatcgtatc tttcaggatt gaagaataaa tcatttacaa aagccttcgc tgcatctttt
     7621 accacaggtt cacctgggcg cataactttg taaattctaa tcgcagctaa atcattttca
     7681 tcatcgatat tttcactttg tttaagaagt tttagagttt ctccatcttg agcaaaggag
     7741 ttaataatcg ctgcatcaac gccattagcc aagtcatttg ctatatcaaa acttttttgc
     7801 tctttaatct tagcaagctt actctcatct aacaaagtta aagaatcaaa taaaacctct
     7861 ccactttctt tatcaataat aggatttgct aaataacgat taagtaaaat ttctacagga
     7921 tattctatcc attttaaacc gtctttaata agctgttctg cttttttctt tgtaagtctt
     7981 tttccagctt gatgaacgat ttttcctttt tcatctttaa tatcatattc tattctatcc
     8041 ataaaatcat ttggattaaa ttctgttaaa aatttatctt ttttcacatg tatagtctga
     8101 ataggataaa acaacttaat aatatcttgt tttttatacc ctaaagctct aaaaagcata
     8161 gttacaggaa cttttctacg cttattgatt cttacataca aaacatcttt ggcatcgtat
     8221 tcaaaataaa gccacgaacc acgatcagga ataatttgtg ctgtataaac aagcttattt
     8281 gcaaccgttg aactttcttc ttctttaaaa ataacaccag ggcttctatg taattgattt
     8341 acaaccaccc tctcaacccc attaatgata aaagatacac gatctgtcat taaaggaatt
     8401 tcgcggatat aaatttcttg ttctttaata tcttttacgc caactttttc ccctgttttt
     8461 tcatcttttt catgcagagt aagacggatt ttcattttta aatttacaga ataagtcaaa
     8521 cctctttcca tgcattcgcg aatggtatat tttggcttgc ctatttcact actaacatat
     8581 tcaagactca atctattttg cggatcatga ataggaaaaa ttgatttaaa aactttttct
     8641 ataccacttt caccattatc aagatttaaa aaataatcaa aactcttttt ttgtaattgt
     8701 agaagatttg ggatttctat ttgttttgaa atgtttgaga agtctactct taaacgattt
     8761 cctaatttat tatctaacat atcgcacata cctcatggta aattttgtaa atttaaaaaa
     8821 gaagacctaa aaattaggta aaaataaaaa aagaagactt gccttggcaa atcttcttct
     8881 aactttaaag cttaaaatta cttaagttct actttagcac cagcttcttc aagttgtttt
     8941 ttagcttcct cagcttcagc tttagccaca ccctctttta gagttgaagg agtttgctca
     9001 actgcatctt ttgcttcttt aagaccaagg cctgtaagag cacgaacgat tttaataact
     9061 tcaatctttt tagcaccgcc atcagttaaa acgatatcaa attcagtttt ttcttcagca
     9121 gcagctgcag caccaccagc tgcagcacca ccagctatca ttacaggagc agcagacaca
     9181 ccaaattttt cttcaaactc ttttacaagt tctgataact caagaacact taaatttgaa
     9241 atatattcta atacatcttc tttagagatt gccatttttt atccttttat ttaatttatt
     9301 cagattcttt tttattttta agcgcattta aacctattgt gaaattggta attggcgcat
     9361 tccaaacttg caaaagcata gcaagcaact cattgcgtga aggcatttta gcaagagctt
     9421 taaccttagc aacatctgca acttcgcctt caatatgagc tgttttgatt tcaaatttat
     9481 cgttattttc ttcaaattta gcagctactt ttgaaacacc tagctgatct tcgccccaaa
     9541 gataaatatt tgtatcttta agaactagac ctgttttacc ggaattatta agagcaatgt
     9601 tagccaaagt atttttaaca atttgaactt ttacattgtt ttctcttgca ttatttctaa
     9661 gctcttctag tttttttgtg ctaagacctc tgtaattaca aactacaata gcttcactag
     9721 ctttaaaacc ttcttcaagt ttagcaataa tctcaacttt ttcgcttcta gtcacatttt
     9781 ctcctttccg attgagattt caagtagagt ggaaatccaa ttaagcttac gcctcgacta
     9841 tcttcaatct aaaataaaca tctcaaaaaa tcaaaaattt tttcaaatgt ttattttaaa
     9901 acaaaagagt tgcaaaaaag caactcttat ttcatatcaa gcaattcttg tgtttcaagc
     9961 tttacagaag ggctcattgt caaagataaa gccgcatttt taatatatct acctttagct
    10021 gcagcaggtt tatgtttgtt aattgccttt acaaaagtgc taacattgtc ccataattgt
    10081 tctttggaaa aacttacttt accaagacct gcatggatat ttccttgctt atcaacacgg
    10141 aaatttacct gaccactttt tgcattatta actgcttgag caacatccat agtcactgtt
    10201 ccagttttag gatttggcat taaacctttt ggccctaaaa ttctaccaac tttaccaaca
    10261 agtcccatta aatttggagt agcaatcaaa acatcaaaat tcatattacc tttttgaatt
    10321 tcttctacta aatcatcgct acccacaata tctgcaccag catttttcgc ttcatcagct
    10381 tttgcgtctt ttgcaattac agcaacacga acttttttac ccgttccagc aggtaaaaca
    10441 acagatcctc ttaccatttg atctgcatgt cttggatcaa cattaagttt taaagcaatt
    10501 tctacagtct catcaaattt agcagacttt aaagtcttta ttgtatcaat tgcatcgctt
    10561 aaagcatact ctttatttga atcaattttt tgtgataatt cttttaatct ttttgctatc
    10621 ttagccattt aattttctcc gcattttaaa gtgctaccgc cttttacctt ggcggtgaaa
    10681 ggattaatct acgatttcaa cacccataga acgagctgaa cctgcaataa ttttagcagc
    10741 ttgatctcta tctttagtat ttaaatctgc aattttctta tctactattt ctaaaacttg
    10801 agcacgagtt aacttaccca ccttattttt aagtggatta tccgtacctt tagaaattcc
    10861 agctgctttt ttgatcaaat ccgtagctgg cggttgtttt gtaataaaag taaaactttt
    10921 atctgcataa acagtgataa caacagggat attaaaacct gccatatctt ttgttctttc
    10981 attaaaagcc ttacaaaact ccataatatt aacaccttgc tgacccaaag caggaccaac
    11041 aggtggtgat gggtttgctt ttgtggcagc aatttgcaat ttaatttcgc ctacgacttt
    11101 tttagccata acaaatctcc ttacttgata taaattaaat tattttctca acttgagaat
    11161 ataagatctc cactggagtt gaacgtccaa aaatagaaac atttaatttt aataaaccac
    11221 gaaccatatc atactcttct acaattgcag taaagtttgc aaatggccct tctgtgattc
    11281 tcacattttc cccttcttca aaagaaatct ttggtttagg cgctgcacga ttgtgaactt
    11341 tttccaaaat caaattaata tctttttctg ttaaaggggt tggctttttg gattctccaa
    11401 taaaacgacc aacctttgga agagattgaa tgcgatgcca aagctctgta tttaaatcaa
    11461 gaagtgcaaa aacgtatcct gaatacaaac ttctttcgct aatcttctcc tttccattct
    11521 taaattcaat aacatcttca gttggaacaa caatttcttt aagttgttct tcaattccgt
    11581 tatcttttac taaattttca atggctcttt taactgccat ttcactgcca gcataagttt
    11641 gaattgcata ccatttatga gtactcattt actctcctta tacgatcgca gaaacaatag
    11701 aggacataag ccaatccact aacgccaaaa acaaagaaat caccacaaca accacaaaaa
    11761 ctgtaatata ggcatttctt acctgttctt ttaaaggaaa aattactttc cttaattcgg
    11821 cttttgataa tttaaaataa gttattaatt tttccattta tttaaacctt aattatggca
    11881 gggcaagagg gattcgaacc cccaaccatc ggatttggaa tccggcgctc taccgttgga
    11941 gctattgccc taagggcgca agcttaactt tttagcttaa cttctttgtg aagtgtatgt
    12001 ttttttaatc ttgggcaata tttttttaat tctaattttt cagtagtatt tttactattt
    12061 ttataggtgc tataattaat atcaccacat tcttcacact ttaaaccaac tttaattctc
    12121 atttcaattt tccttaaaaa attaaagcca agcttttaac ttggctttat taaattattt
    12181 aataatttta gaaacaacac ctgaaccaac agttttacca ccttcacgaa tagcaaaacg
    12241 agttccttct tcaagtgcta ctggagcgat caagcttaca gtaattctca cattttcacc
    12301 tggcataacc atttcaacac catcagctaa tttaatcgaa cctgtaacat cagttgttct
    12361 tacataaaac tgcggtctat agttgttaaa gaatggagta tgtctaccac cttcatcttt
    12421 atttaagata taaacttcag cttcgaagtc agtgtgtgga gtaattgatt ttggtttagc
    12481 aagaaccata ccacggataa cttcttcttt tttagtacca cgaagaagaa cacctacgtt
    12541 atctcctgct tcgccttgat ccatttcttt tctgaacatt tcaacacctg ttacagttgt
    12601 tgtttgagta tctttaatac caacgatttc gatagtatca cctactttta caacaccttt
    12661 ttcaattcta cctgtaacaa cagtaccacg acctgaaatt gagaaaacgt cttcaattgg
    12721 catcaagaag tctttttcag tatcacgagt tggagttgga atatagctat caactgcagc
    12781 cataagatcc ataatttttg ctgaccattc accatcttgt ccagctttag cttcttcaag
    12841 agcttttaaa gcagaaccag aaataatagg tgtatcatcg cctgggaaat cataagagct
    12901 taataattct ctaatttcca tttcaactaa ctctagaagt tcagcatcat caaccatatc
    12961 tgctttattc ataaaaacaa caatatatgg aacacctact tgacgagaaa gaagaatgtg
    13021 ctctctagtt tgtggcatag ggccatctgc agcagaaaca accaagatcg ctccatccat
    13081 ttgtgcagca cctgtaatca tgtttttaac ataatctgcg tgacctgggc agtcaacgtg
    13141 tgcatagtga cgattgtctg tttcatattc aatatgagaa gtagcaatag taataccacg
    13201 ctctttttct tctggagcat tatcgatatt atcataatct ttaagctctg ccaaacctct
    13261 tctagaaaga acagcagaaa tagcagctgt taaagtagtt ttaccatggt caacgtgacc
    13321 aatagtacca atatttacgt gtggcttatt acgtgaaaat ttttctttag ccattttttt
    13381 cctccgtata aaaaataaat tgagcaaagc aagtcttata tctatataat tttttcaatt
    13441 catggagctc atagcgggaa ttgaacccgc gacctctccc ttaccaaggg agtgctctac
    13501 ctctgagcta tacgagcgct cagaaaaatt atacacaata acagacaaca aaaactctta
    13561 aatgggatat atactgtaag ttaaaggttt taaaatacag ctcccagttc ttttaaatta
    13621 ttggagcggg aaacgggact cgaacccgcg accctcagct tggaaggctg atgctctagc
    13681 caactgagct actcccgcaa agcatggtgg tgagtcgtgg attcgaacca cggaaggcga
    13741 aagccagcag atttacagtc tgccctcgtt ggccacttga gtaactcacc ataaaaatat
    13801 tgctttttca atattctggt caaacactgc taaaataaat ggagctggtt aagggacttg
    13861 aacccccgac ctgctgctta caaggcagct gctctaccaa ctgagctaaa ccagcaaaaa
    13921 taaaagtaag attataactc aaaaaaaaaa ttttgtcaag acttttttag tttttctata
    13981 aaatttttag tcttgtaaat tttattatca taaaccaata ttatttttat ctatttgtga
    14041 taatcaaata aatttaaaaa tttctttgct ctttcgcttt ttggattttt aaaaaaactt
    14101 ttaggatcat tttcttcgat gatttttcct tcatccataa aaataatttt atctgctaca
    14161 gctttagcaa aacccatttc atgagtaaca ataagcatag tcataccctc ttttgcaaga
    14221 tttaacatca cttctaaaac ttctctgaca atctcaggat ccagcgctgc tgtaacctca
    14281 tcaaaaagca ttaactcagg attcatgcat aaacttctta ctatagcaat tctttgtttt
    14341 tgtcctccgc taagttctct tggataagca tgaattttat gcaaaagccc caccttttca
    14401 agccaaattt tagcctcttg taaaacctta tctttctttc ttttttgcac tttcataggc
    14461 cctaaaagta tattttcttc aacacttaaa tgctcaaaaa gctcataaga ttgaaaaacc
    14521 ataccaactt tttgacgcat tcttggccat tctttgaaat ctttatctat tttttcattg
    14581 tcaatataaa tattaccact tgcaatctct tcaagcccat taatacaacg caaaagcgta
    14641 gattttccgc acccactagg acccaaaatc accacaactt ccttatcctt aacttctaaa
    14701 ttaatatctt ttaaagcatg atgcgaacca taatactttt gtaaattttc tatttttagt
    14761 atactcattt tagctccatt ttttctctaa ttttcttgaa tataaagtga taggataaca
    14821 aagtataaaa aagataaaaa aaatcaaacc ataaataata aaaggtgcaa aatcatttct
    14881 attatgaaat tctataattt gttgccctac ttttacaagc tctaccgcgc cgattaaata
    14941 agcaaaggtt gtacttttga tcatgcgagt aagtaaattc atgctcatag gagttaaacg
    15001 acgcatagct tgtggaataa taacataagc aaaactttgc accgtattta aacctaaaga
    15061 tgatgcactt tcatactgat gttttggaat actctgtaag gaaacacgca ccaaatccat
    15121 catctcaaaa caaccccaaa tgctaaaaac aataatagct acacttacag aactcaaatc
    15181 ccacccaaac catctaggaa aaccaaaata caccacaaaa aaccatacta aaagtggcat
    15241 aacacgtaca aattctaaac ctaaacgaca aaaagcatag atataggtat ttttaaaact
    15301 cattaaaatt cccaaaaaca acccgcctat cgaagtaata atagtgctga taaatgaaat
    15361 ttcaagagtg acaaaaagcc cttgccagag tcttaaaagc gtatcggtat ttaaaagttc
    15421 aagcataaag caaccttttt tcaaacttta gcaaaataaa agacaaaggc aaaataatgc
    15481 acaaatatcc cataaacaac aaaaacaata gctcatctgt cttataggtt aaggaattta
    15541 aactcttcat taaattcacc aaatctggca aggcaataat gctaacaact gaagtttctt
    15601 tgattaaaaa tataatatta gcactaatac ttggcataga aatagccaaa gcttgcggca
    15661 aaatcacata acgcaaattt ccaaattttg aaaaacccaa agaaagtcct gcttcaaact
    15721 gctgttttct tatggcttca aatcccgccc ttaaactctc agccatataa gaacccccta
    15781 aaaaactaag tcctactata gcacaagcaa aagaaggtct taaagtttct tctacgctta
    15841 aacaaattaa attgagcggt ggaatttgct ctaaatgtat attaaattta ggcaaagcat
    15901 aatataagaa aaaaagttga attaataaag gcgtatttct tgaaaactct atataaagct
    15961 tgcaaatatt ttctaaaatt tttattttaa aataactcat taaaatgcaa aacaagccta
    16021 ttattaaaga aaaaataatt ccaaaaaagc ttagttttat cgtaagccaa gcagctgtta
    16081 aaaaagcggg agcttgagct aatataaaat caaaatccat tctctacctt aattttacca
    16141 aagttctttt ataatcatat ctttatttaa aatttcaatt ttaccttttt ttgtatcaat
    16201 aagttctgaa attttaagct cttttaacac tcgagataaa gattgcgctc taacatttaa
    16261 atcaattgcg atttgttttt gcgaaattgt atctaatttt ttttcatttt ccaaaagata
    16321 ctttaacaat ctcgttctta aatctaatgc attttgagat aatttctttt ctaaaatttt
    16381 gattttatca aaaagtgagc tgataagtaa aaaattgaat tctttatttt cactgcataa
    16441 attttgaaaa ttaataaaat caatttccaa aatttctcca tcttcttcaa agatggcatt
    16501 agcaggataa tttaattttt taaaagcagg catttctgct ataaaatttg gaggattaaa
    16561 ataatgcaaa gtaatttctt tatcacttga tgtactttta taaatgcgta tttttccctt
    16621 gagtaaaata aaaaattttt tagcctcttc gccttcataa aataaaatac tatttttttg
    16681 aaattttttt aattttccta cactagataa aagttctaaa taatctttca ttatataata
    16741 ttttccattc ttaacttatg ttaaatttaa tttatcttat ttttgctata ttaacgccat
    16801 aaaattaaca ttcaagaaag gcttatatga aatttgaaac aattaatcaa gaaagcatag
    16861 caaaactcat ggaaatattt tatgaaaaag ttagaaaaga taaggattta ggtcctattt
    16921 ttaacaatgc tattggaaca agtgatgaag agtggaaaga acataaagca aaaataggaa
    16981 atttttggac aggcatgctt ttaggcgaag gtgattataa tgggcaaccc ttaaaaaagc
    17041 atctagatct acctcctttt cctcaagaat tttttgaagt ttggctagga ctttttgaag
    17101 aaagtttaaa tatagtttat aatgaagaaa tgaaaacagt tattttacag cgtgcacaaa
    17161 tgatagcttc acattttcaa aatatgcttt ataagtatgg tggacattaa tttggcattt
    17221 tttttgccaa atcttttttt accttttcta aaatctcctc atccttagaa aaatcaaaaa
    17281 atttaaactc atttccatgt tgcataaaac catcgagcaa atctccactc aaacggtttt
    17341 taagatcaag ctctgctatt ttaaacccat ctaaagtgct agcaaattct tttaaacgac
    17401 ttggaatttc tttaagttta gtataaagat aacaagtgct tttaagccct acacgaccta
    17461 cacgaccacg aagttgatgc aaggtagcaa gtcctaaacg ttccgctcct acaatcacta
    17521 tcatactcaa tcttggcaaa gaaatgccca cttccactac tgtagtgctt agtaaaatat
    17581 ttccctcatc tctaaaacgc tctaaaattt catctttttg tttatctttc ccatgagtta
    17641 caaaaacttt ttcatagtga ctctgccaat attctttagc ctgctctaaa gaaagataag
    17701 gaatattatc actagcactc actaagggat aaataatgat aatttgatga tttttagcga
    17761 tttcttcttt gatcttctcg ctaagcttag aaaagccttc attttgtata caataagttg
    17821 tgatatcttt tttaaaaggc atttgtttaa tgaaactaaa atttaaaagt tcagattgta
    17881 tcatgcttaa agttcttgga ataggcgtag ccgaaaactg tataaaatga ggggcaaatt
    17941 cttgtttact taaagaatga attttctcac gctgagccga gccaaaacga tgttgttcat
    18001 ctatcattac aagtacggca ttatggcttt ctaaatgaat taaagcatga gtacctataa
    18061 taagatttgc tttttgaata ttttgttcta aatctttttc ttttttacct cctttaataa
    18121 acaaaatatt cataaaatca ggcaaaaatt tcttagcctc ttcataaagc tgatgcgcta
    18181 aaatactagt aggtgccatc aaaatagctt gtttaggata aaccatcaaa gccgcaccaa
    18241 gcaaaaccaa ggttttacca caccctacat cacccataat cacacgcctt ttggcttctt
    18301 ttgagtgtaa atctttttct atatctttta aggcgttaag ctgatcttta gtaagagaaa
    18361 aaggcaaatc tttaagccaa ttggctatgt taaaaacatt gatttgatga gctttaaaat
    18421 gcgttttttt agcttttaaa cgctttaaaa aattatatat ttctatatat tttaaatctt
    18481 tgctaaaatt ttgcaaattt tcaaacataa aaaaactttt ttcatcataa gcatg
//
LOCUS       DARGEY010000020        17943 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.020, whole genome shotgun sequence.
ACCESSION   DARGEY010000020 DARGEY010000000
VERSION     DARGEY010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17943
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.020"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            13..1986
                     /gene="uvrB"
                     /locus_tag="SF008_000621"
     CDS             13..1986
                     /gene="uvrB"
                     /locus_tag="SF008_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEG8232912.1"
                     /translation="MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNVLENKKGKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPYTLFDYFAIKNRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSATSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQMAYNKKHNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPANERAKL
                     VKELRKQMLEAAKALEFEKAAAIRDEINKLRDL"
     gene            complement(1981..3909)
                     /locus_tag="SF008_000622"
                     /pseudo
     CDS             complement(1981..3909)
                     /locus_tag="SF008_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856839.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
     gene            complement(3912..4520)
                     /gene="kdpC"
                     /locus_tag="SF008_000623"
     CDS             complement(3912..4520)
                     /gene="kdpC"
                     /locus_tag="SF008_000623"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HEG8232913.1"
                     /translation="MFRTLLSFFVVMLILCTLVYPFALNTVAKFIFPYQSSGSLVDKE
                     GRPTLDVSKAVGSKLLGQDFNKPYFLHSRTSVSNYNTSDTNESSVSLGGFNYAMSNPA
                     LKERVQKDLQKFLDENPQITKEQIPLDLLSASGSGLDPHISLQAALVQIPRISQSSKI
                     TKEELEKIIQENTESKFLGIFGEEKVNVLAVNIAIAKAMKKE"
     gene            complement(4522..6581)
                     /gene="kdpB"
                     /locus_tag="SF008_000624"
                     /pseudo
     CDS             complement(4522..6581)
                     /gene="kdpB"
                     /locus_tag="SF008_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
     gene            complement(6591..8280)
                     /gene="kdpA"
                     /locus_tag="SF008_000625"
                     /pseudo
     CDS             complement(6591..8280)
                     /gene="kdpA"
                     /locus_tag="SF008_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit A"
     gene            complement(8611..10035)
                     /locus_tag="SF008_000626"
     CDS             complement(8611..10035)
                     /locus_tag="SF008_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEG8232914.1"
                     /translation="MDFLTSLSEGGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCVGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIVLVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIVIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKAVLGDIVKEHPWTYAVMLLLISKFVNSQAAAISA
                     FVPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMVAGYL"
     gene            complement(10199..11449)
                     /locus_tag="SF008_000627"
     CDS             complement(10199..11449)
                     /locus_tag="SF008_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HEG8232915.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDSFYKHNVNSAFVDSKGLAKKSVYELLNEQILPPLFPTNK
                     SQELAKKIIECLNEEGYFEYDEEFLKEYSLEEIERVRARFKFLDPVGVGAKDYKEAFL
                     FALENMELDEDIDEFCRMLIMDFENIQNYTKEPLYKEALAVLKRFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            complement(11449..12177)
                     /gene="lptB"
                     /locus_tag="SF008_000628"
     CDS             complement(11449..12177)
                     /gene="lptB"
                     /locus_tag="SF008_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HEG8232916.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            complement(12170..12577)
                     /gene="tsaE"
                     /locus_tag="SF008_000629"
     CDS             complement(12170..12577)
                     /gene="tsaE"
                     /locus_tag="SF008_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEG8232917.1"
                     /translation="MKEFILAKNEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDARVDSPTFSIMQRYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            complement(12574..12819)
                     /locus_tag="SF008_000630"
     CDS             complement(12574..12819)
                     /locus_tag="SF008_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEG8232918.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVG
                     DIITLHFTEYTQKYKVLAIPSTKSIPKNAQNEYVVKL"
     gene            12974..14194
                     /locus_tag="SF008_000631"
     CDS             12974..14194
                     /locus_tag="SF008_000631"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEG8232919.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFNPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGDLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVMVIGRESSNDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            14207..14650
                     /locus_tag="SF008_000632"
     CDS             14207..14650
                     /locus_tag="SF008_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEG8232920.1"
                     /translation="MKVLLIKDVKAFGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFEIANLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTLKSLGVHEVSVKLGHAIHAKFNINIKAE"
     gene            14650..15192
                     /gene="hslV"
                     /locus_tag="SF008_000633"
     CDS             14650..15192
                     /gene="hslV"
                     /locus_tag="SF008_000633"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HEG8232921.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHTDLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            15189..16508
                     /gene="hslU"
                     /locus_tag="SF008_000634"
     CDS             15189..16508
                     /gene="hslU"
                     /locus_tag="SF008_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HEG8232922.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGDLDESAIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELDFNDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            16505..17380
                     /gene="era"
                     /locus_tag="SF008_000635"
     CDS             16505..17380
                     /gene="era"
                     /locus_tag="SF008_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEG8232923.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENF
                     LSLNPQVPHIIALNKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDE
                     IVKYLDEHEYFYDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINRTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFITVKKNW
                     QKDEEFLKKLLNDEN"
     gene            17367..>17943
                     /locus_tag="SF008_000636"
     CDS             17367..>17943
                     /locus_tag="SF008_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232924.1"
                     /translation="MMKINSLNKINFIKSTDLLYAQRTGISKEDELFNNLTADFKLSK
                     PFDYQIAFFKHNEIYHCFLAPVYKLKKSRFCFPEPLIFQALFDERFIEESDYCVLNLY
                     DQTLYLYFYQEGKFINLKKIENFNPGNMDLFFKQNRFTELLKHYESKLLLYQDLNTIK
                     HYFSSQIKCLNLNDILDKNSLLKLSSYSIKNL"
BASE COUNT         6556 a         3110 c         2626 g         5651 t
ORIGIN      
        1 taaagtagaa aaatgttaga acttaccagc gaatttaaac ctagtcctga tcaacaagaa
       61 gccataaaag gtatagtaaa aagtataaaa aaaggcaaca aatatcaaac cttactaggc
      121 gttacaggaa gtggaaaaac ctttaccatg gcaaatgtca ttaaagaact taatatgccc
      181 actcttatca tgagtcacaa caaaagcctt tgtgcacaac tttatagcga atttaaaggc
      241 tttttttcta aaaatcatgt ggaatatttt atatcttatt atgattatta tcaacctgaa
      301 gcctatattc cacgcactga tgttttcata gaaaaagaca gctccactaa tgaagactta
      361 gagcgtttaa gactgagtgc cactgcttct cttttaagtt atgaagatgt agtttgcata
      421 gctagtgttt cggcaaatta tggacttggt aatccaaatg aatacatagg catggtttta
      481 atctttgaac taggtatgca aatttcacaa aaagaacttt taaaaaaact tgtagatatg
      541 ggttataaaa gaaatgataa tttttttgat cgtgcagatt ttagagttca aggagatatt
      601 atagatattt atccagctta ttatgaagat gaagtagtaa gacttgaatt ttttggcgat
      661 gagcttgatg ctatgtatca ttacaatgtt ttagaaaata aaaaaggtaa agatttaaaa
      721 cgcttcatac tctatcctac aagccagttt agtgtaggtg aaacaagact aaaacaagcg
      781 ataaaagaca taaaagcaga acttaacgaa cgccttgctt attttgaaca tgaaaataaa
      841 ctcgtagaat atcaacgcct taaacaaagg gttgaatttg atcttgaaat gcttacaagc
      901 acaggaatgt gtaaaggcgt tgaaaattat gcaagacatt taacagggct taaagaaggt
      961 gatactcctt atacgctttt tgattatttt gcgattaaaa ataggaaatt tcttgttata
     1021 gtcgatgaaa gccatgtatc tttaccacaa tttagaggta tgtttgcagg agatagaagc
     1081 agaaaacaaa ctttggtaga ttatggtttt cgtttacctt cagccttgga taatcgtcct
     1141 ttaatgtttg atgaatttat ccataaaaat tgtcaatttc tttttgtttc agccacacct
     1201 gcacctttag aacttgaact tagcaaagaa aacatctttc atcaaatcat gcgtcctaca
     1261 ggactgcttg atcctttaat agagttaaaa gatagtgata atcaggttga aattttattt
     1321 gatgaggcta aaaaagtcat acaaagaaac gagcgagttt tagtaactgt actgactaaa
     1381 aaacttgccg aagagcttac aaggtattat ttagagcttg gtataaaagt caaatacatg
     1441 cactcagata tcgatgctat agaacgcaat gaaattataa gaggtttaag aagcggtgct
     1501 tttgatatgc taattggcat taacttactt agagaaggac tagacctacc tgaagtttca
     1561 ctcattgcca ttatggatgc agataaggaa ggctttttaa gaagtgctac aagtttaatc
     1621 caaaccatgg gaagagcagc tagaaatgtc aatggtaagg ttttgctttt ttgcaaaaaa
     1681 atcacaaaat ccatgcaaga agctatggat accaccaatg aacgccgcaa acttcaaatg
     1741 gcttataata aaaaacacaa tatcacgccg acttcagtta aacgccatat tgaagagagc
     1801 ttgaaaaatg aagaggattt gggcgaaatt tatcgcaaag gtaaaaaact agaaaaaatg
     1861 cctgctaacg aaagagcaaa acttgtcaaa gagttaagaa aacaaatgct tgaagcagct
     1921 aaagcacttg agtttgaaaa agctgctgca attagagatg agattaataa attaagggat
     1981 ttataataaa aatatatccc ttgttctaac tcctgcctca ttaagtaaag cacttaaaat
     2041 ttcatactga aagtcttgca agggacgttt ttcttttaaa actataccta taaccccttt
     2101 agttttttcc catcttctat aggtaaatac atagcattag cattaggcag ggtattcgta
     2161 caaacacctg ctctttcttt atttgttgca acccattgag caatagcaat ctcatcggca
     2221 ctaaaacaat tttttaacat ttgcttatca tcgttaaaaa aaagcaaagg tttcgataaa
     2281 atattgtttt tatttatagg ataaataata ataggcaaat ttaataattt taaagcttga
     2341 tttccaagtt gttcccaaag ctcttgtttg cttttcactc ttgctaaatt ttcactattt
     2401 tcaagtaaaa tagctgttct ataagctctt ttagtgagtt ctttagattg caattttaat
     2461 cttctagtaa aaacagctgt taaaaatcca actataaaca tagttgtaaa agtaataata
     2521 tttccactat catgaacttt aagactaaaa ataggttcta aaaagaaaaa attataaatc
     2581 aaaacactta ccaaagaaga ataaaaggcg aaaattttat tgtcagaaat aaaagaagaa
     2641 gcaaaaactg ctaaaataaa aatcataact atattacttg gctgagtatt aaatttatga
     2701 aatacaaaag ctataaaagt tgctaaaagc aaaactcctg tgatttttaa aaaacctaaa
     2761 aaatcaaaac cttttttact tcgtatttta ggagtagaaa tttgattttc attgacaaga
     2821 tataaatcaa tattgggtgc ttttttagcg acagcttcaa aaatctcttc tttaaacttt
     2881 ttttatcttt atttttgcct aaaacaattt tagagacatt gctaaggctt gaatactctg
     2941 caatttgtct tgctatatca tcatcatata cgctaatgat ttcagcatca aaacttttag
     3001 ctagttctat attttcttct aaggcttttg cttctttaat attgggattt tttatataaa
     3061 gcgcactcaa tttagcatga aaagctaaag caagtcttgc agctgcacga ataacctttg
     3121 catttgaagc attaatacaa actaaaatat gctctccagt atgataagct aaatcatcat
     3181 taataagcct ttgttcactt gctcttaaat tcactcttga agcaagtctt cttaaggcaa
     3241 tctcacgcaa agctataagt ctttcttggc gaaagaaatt ttcaagtgct agtttagctt
     3301 gtttttcctt ataaatttta ccatcttgca ttctttttaa aagcttatta ggttcaatat
     3361 caacaagttc aaacctgatc agcctcatca aaaatacgat caggaatacg ctctttaact
     3421 tctatcttac tgatattagc gactaaatca tttaagcttt ctaaatgttg tatatttaaa
     3481 gtagtataaa catcaatccc tgcttttaga agttcttcta tatcttgaaa acgcttttca
     3541 ttacgcaagc ctttagcatt agtgtgtgca agctcatcta ctaaaaccaa agcaggcttt
     3601 ctcttaaggg tagcgtctaa atcaaattct tttaatacta tatttttata aggaatttca
     3661 agattagcta tactttcaaa accttgtgtt aagccattgt ttcaggtcta tcgtgaggct
     3721 ctatatagcc taaaacaaca tcaactccat tatcccttaa agttctagct tcacttaaca
     3781 tagcataagt ttttccagaa cctgcagcat aacctaagaa aatttttaat tttgcaagtt
     3841 tgtttttttc ttcttcctta gctttaacct caagtttttt agaatttgtt caggactttg
     3901 tctttgcatg tttattcttt tttcatggct ttagcaatag ctatattaac agctaaaaca
     3961 ttaacctttt cttccccaaa aatccctaaa aatttagact cggtattttc ttgaatgatt
     4021 ttttctagtt cttctttggt gatttttgaa gattgactta tcctaggaat ttgcactagg
     4081 gctgcttgaa gactgatatg aggatcaaga cctgatcctg aagcacttaa taaatccaaa
     4141 ggaatttgtt cttttgtaat ttgcggattt tcatctaaaa atttttgcaa atctttttgc
     4201 acacgctctt ttaaagcagg atttgacata gcataattaa atccacctaa acttacactg
     4261 ctttcatttg tatcgcttgt attgtaattt gacacagatg ttcttgaatg tagaaaataa
     4321 ggtttattaa aatcttgacc caaaagcttt gaacctaccg ctttgcttac atccaaagtc
     4381 ggacgacctt ctttatctac taaacttcca cttgattgat aaggaaaaat aaattttgca
     4441 actgtattta aagcaaaagg ataaacaaga gtacacaata ttagcattac cacaaaaaaa
     4501 ctaagcaaag ttctaaacat atcacactcc taaaattcta agtatccaag ctataggaat
     4561 atcaattatt ttttatccct ataaaaggtg cgatcatacc acccaaacca taaatactta
     4621 aatttcttaa aagcaaatgc tcgcttttca taggcttaaa tttaactcca cgcatagcaa
     4681 taggtatgag caaaggtata ataatagcat taaaaataag tactgataaa atagcgcttt
     4741 gcggggtagc taaatgcata atatttaaaa tttgcatttg aggtaaaacc acactaaaca
     4801 tagcaggtaa aatagcaaaa tacttagcaa tatcatttgc catactaaaa gttgtaagac
     4861 tgcctctagt aataagcaaa ccttttccta tttcaactac ttctaaaatt ttagtaggat
     4921 tagaatcaag atctatcata ttggctgctt ctttggctgc ttgagttcct gagttcatag
     4981 ctatacctac atcagcttgt gcaagagctg gagcatcatt ggttccatct cctgtcatgg
     5041 ctactatctt accttgggct tgttcttttt taatagcttc tattttatct tcaggcttgc
     5101 attctgctat aaatccatca agccctgctt ctttggctat agtagctgct gttaaaggat
     5161 tatctccggt acacattaaa gtttttatgc ccatttttct aagctcatca aagcgctctt
     5221 taagtcctgg ttttactgtg ttttactgta tcctttagat aaatcactct taaaattttt
     5281 tcatttttac acactaccaa aggagtacca ccaagatttg aaatttccat taccttcgtt
     5341 tctaaatcgc taggaatttt tccattcatt tcgcttatat aagctcttat agcatcaaaa
     5401 gcacctttgc gaatttttat attatcttgc aaatccacac cactcattct attttgagcg
     5461 ctaaattcga taaattcttt aatatcatta ccttctaatt cataacccat tttttgagcc
     5521 aatgcaacta tgcttttacc ttctggagtt tcatctttta aagaggataa aacacaagct
     5581 ttaatcattt cttctttact tataccttga acttcataaa attcatttgc caaacggttt
     5641 ccaaaagtaa tcgttcctgt tttatctaaa atcatagtat caacatcacc acaactttca
     5701 acagccttgc ctgaaagtgc gatcacatta aaacgcgtta ccctgtccat acctgctatt
     5761 cctatagctg ataaaagccc cccccctata gttgtaggaa taagacatac aagcaatgct
     5821 actaaccatg aaataggcaa actcacgcct aaaaattgca taaaaggata taaacttaca
     5881 accaccacca aaaaactcaa actaagtaca attaaaagag tattaagagc aatttcattt
     5941 ggagtttttt gacgcgcagc accttctaca agattgatca ttttatctaa aaaactttcc
     6001 ccagctccaa ctaaaatttt aatctttaaa aaatcagtta aaaccgtagt cccacctgta
     6061 acagaagaaa aatcaccgcc cgcttcacgc ataacaggtg cactttcacc tgtaatagct
     6121 gattcatcaa cacttgcagc accttctata atttctccat cattaggtat aagttcacct
     6181 gctttaacta aaactatatc acctattttt aactcgctag aattaagcat ttcttcactg
     6241 ccatcacttt ttatgcgtct agctttagaa tcctttttgc tttgtcttaa ggtagctgct
     6301 tgggctttac cccttccttc tgcaatactt tctgcaaaat ttgcaaaaag caagattata
     6361 aataaaataa aagtgattaa gatgttataa attctttcat cagaatttcc attaaataaa
     6421 gtaggaaaaa tacttaaaat caaagtaaga atcgatccaa cttccaccat aaacataaca
     6481 ggatttttta ccatcaagcg tggatcaaat tttaaaaatg ctccttttat ggcattattt
     6541 aaaatttctt ttgtaatgag tttattttgt tttttagaca ttgactctcc ttaatgccat
     6601 aaagataaat attctgcaac gcttgataaa gtaagcactg gaaaaaaagt aagtgcagca
     6661 aaaatatata taatacaaac aagcacaaac ataaaagtta aattatctgt ttttaaagaa
     6721 tttgcagtat tttcttgtgt atttttagcc aaaagcgatc cagctatagc aagctgagct
     6781 attaaaacca aataacgccc acaaaacata gcaaaagctg tgcttaaatt ccaaaataaa
     6841 ttatcatctt ttaaaccttc aagtcctgaa ccattatttg ctgccgaaga actaaattca
     6901 tacaaaattt gagccaagtc atgaaagcta ggattgctta tactatcttt tgcaaaaaca
     6961 acagctaatg cacttaaaac aaggattaat aaaggatgga taagaattac caaagctata
     7021 agcttcattt gtgcgctttc tattttttta cccaagaatt ctggagttct acctatcatt
     7081 aatgcacaaa taaacacggt taagagcaca taaataatca tattcataag ccctactcct
     7141 tcgccaccga aagctacatt tagcatcata tttagcaaag tagcactgat acttaatgga
     7201 tttaaactat cgtgcatatt attaacgctt cctgcagtaa aagcagtagt tacagcacta
     7261 aataaactcg aaccatctgt gccaaatctt atttctttac cttccaaatt tcccaaattt
     7321 gcatttaaac ccaaagaatc caaatttgga tttgacattt tttcgctaaa ataaattaaa
     7381 agcaaagaaa tgataaaaat aatccccatt gcaccaaaaa taactccccc ttcttttccc
     7441 ataagagcaa aaccttgtct ttcttttcta tgataaacca tcaatccaaa agctacaaca
     7501 caggcactag gaataagcat catggataaa atttgcaaaa aatttgtaag taaagcagga
     7561 ttttcaaaag gcatgcttga attagcacca aaaaaaccac ccctatttgt ccctaaatgt
     7621 tttatagact caagagctgc aacaggacat gtggcaatgc tttgaaattt attttctaaa
     7681 gtaagcacgc taaaatttgc gtgataattt tacaccacgc cttcagagat aaaattacag
     7741 ccaaaataaa acttaaaggc aacatcaaac gcgtaataat acgcgtaaaa tcttcataaa
     7801 attcccattt gcataccaca taaagcacga caaaaagcca tacaagcaga atatccactt
     7861 gcacttgaaa caaacatagc aagtaaaatg cctgtatttt gggaaagcaa acttaaagca
     7921 ctctctccac tataatgctg aaggtttgta tttgtagtaa aactaattac agtgtttaaa
     7981 ttcaaatccc ctttcataga atttatcgaa ttgggattta aaaaaagttt atcttgcaaa
     8041 taaaaaatca cgaaagaaaa aatagccact aaggcattaa aagcaattaa atgcaaagaa
     8101 taatttttgc caagtcatat tttttctatc aattgcacaa attttataaa ttaagttatc
     8161 aattggatta aaaataaaat caaaaatagt ttttttacag cttgcaattt tataaagata
     8221 gtttccaaaa attaaagcca atataaaagc tataatcagt gttattaaaa tttctagcat
     8281 atttttcctt taaaattttt caggatataa taagcataaa ataaataaag agcaagtatt
     8341 aagcttaact agtaaaaaca tcatccgcat gtcctagttt gaatttcaca aaaatggata
     8401 aaaaatcata aactaccaaa agctaaaagc aaaagcaaag ataacatcca taggatagcc
     8461 ctttctcatt gattcaaaat aggatttatt ctatccttgt taagcttata ttttgattaa
     8521 tactaatttt atgatttatt tataattttt atttacatta aacaaaaaga taaatggaga
     8581 atttagcagg aacaatcctg ctaaaatttt ttaaagatag cccgctacca tagcgataaa
     8641 ataacccgct atacaagaag taattacacc tataagacct ggtaaaataa aactatgatt
     8701 aataacaaat ttaccaatat gagtagtacc tgatctgtca aattgtatag tagctaaatc
     8761 gcttggataa gttggtaaaa tataataccc ataacaagca gctgcaaaag caacaatcac
     8821 accgggttca acaccaattc ctaaagccaa aggaacaaaa gccgaaatag ccgctgcttg
     8881 agagtttaca aatttcgaaa tcaaaagaag cattacagca taagtccaag gatgctcttt
     8941 tactatatct ccaagcactg ctttcatcat aggagtatga actgcaaaca tagtatcagc
     9001 catccaagaa attccaaaaa ccgcaacaag tgctatcatg ccagatttaa aaatttcatt
     9061 agagccaatt ttctttgcat ctgttttagt aaagataaca atcaaagaac ctgctaaaag
     9121 catgaacatt tgaatgactg agaccataga taaaacgtcc attttaggat tgcctaaagc
     9181 atctacttga ggaatgccat tttttacaac ttgaccccaa tttggacgta aaaaatcaaa
     9241 tacgcccagt aaagccacta aaacaatagc tcctaagaaa atccacattg caacccaatt
     9301 gctctttgga agtttaacac ctaaaagtgt tttagaatcc ccataaacat attttttaaa
     9361 ttcaggatct ttaagttttt cttgaaatac ctcatcttta tccaaatcct tccctctaaa
     9421 ccaagaaaaa attcctacac acaatacgcc aaacaatgta ctaggtatag taatttgaag
     9481 aagattgata taaccatcaa aacccgctaa tttatgatta gcatttaaaa gcaaagcggt
     9541 caaactcaca acagccacag atacaggaga tgcaataata cccatttgtg atgatataga
     9601 agctgctgcc attggacgct cgggacgaat accgttttta atcgctatat cgtaaataat
     9661 aggcataata gtataaacca catgtcctgt tccacaaagt atagtcaaaa agcaggttac
     9721 aaaaggcgct aatatcgtta aaaatttagg attgcgtctt aaaattcttt ctgctatttg
     9781 aagcataaca tcaagaccac cacttgcttg caaagttgca cttgcaacca ctaccgctaa
     9841 aattgtaagc ataacatcta tagctggttt tccaggtttt atatgaaaag caaatacaag
     9901 cattaaaata cctataccac caagcaaacc aagcgctata ccaccttttt ttgcaccgta
     9961 aaaaagacaa attaaaacga taatgatttg gattgcaaat tgccctccct cactaaggct
    10021 tgttaaaaag tccattttaa ctcctttgaa aattaatatt taaaaacagt tattattgta
    10081 tcacattttt aaattaaaga ataatatttc taaaaataaa acaataattt tttatattat
    10141 ttaaattaaa tttaaatata aaacaaaagt gtaatgggtt tgatagattg atagaatttt
    10201 atccttcaag ttcatataat ttttttctat ctgtagagct tgctatatta agatgtttgc
    10261 gatattttgt aatagttctt cgccctatat ctactttaaa ttcttctttg attaattcta
    10321 aaattttact atcgcttaaa ggtttattgc gatcttcatt ctttactaaa tttgccacaa
    10381 attctttaac acctacattt gaagtctctc cctcttcatc aagagcaaaa gcaaaaaaat
    10441 cacgcaaagg gataagtcct ctttcacaac ttaaatattt atttgccaca gctcttgata
    10501 tagtcgaagc attgcgttct aaatcaagtg ctaaatcctt aaaagtcata ggttttatct
    10561 cttttcccat gaaaaaatca tattgatatt ctactatcat aagccctatt ttataaagag
    10621 tagcttttct catcgctaaa gcatcaacta aattttttgc ttctttgatg taatgactta
    10681 aaaaatcatg ctctaaacca tcagtttgga ttgaaatttc aggataataa tcatcattga
    10741 tttttacttt aatttcacca ttttctttat aaacaaaaat atcaggaaca attatacgag
    10801 aatcttcaaa atattccaaa aaagggggag tgctaaagcg cttaagtaca gctaatgctt
    10861 ctttatataa aggctctttg gtatagtttt gtatattttc aaaatccata atcaacattc
    10921 tacaaaactc atcaatatct tcatctaact ccatattttc aagagcaaat aaaaatgctt
    10981 ctttgtaatc tttagctccc actcctacag gatctaaaaa tttaaatctt gctcttactc
    11041 gctcaatttc ttccaaagaa tactctttta aaaattcttc atcgtattca aaatatcctt
    11101 cctcatttaa gcattctata attttttttg caagttcttg agatttgttt gtaggaaaca
    11161 aaggaggaag aatctgttca tttaaaagct cataaacact ttttttggca agtcctttac
    11221 tatccacaaa agccgaattt acattatgtt tataaaatga atcaaaataa ttcttaccct
    11281 tatcatgagt ttgtatcgaa tcttgaacat ttaagaaagg attatcctca gcaaatttat
    11341 ctaaattttc ttttaaatcc tctatatttg cttgtaaaat cggcaaccaa gagcgtaaag
    11401 tttgagaaat tttagtcttg ggtgcttggg tgattttttg ctttaacatc aatcaaggag
    11461 tttaaactcc gctcctaaat aatacttttt cacgtcttta ttggttgcaa tttcatcagc
    11521 attcccacta gcaagcaaag agcccgatct tataacataa gctctatcac aaatagccaa
    11581 agtctcacgc acattatgat cggtaattaa aaccccaatc cccaatcttt taagctcttt
    11641 aattaaagtt tgaatttcag ccactgctat aggatcaaca cctgcaaaag gctcatcaag
    11701 aagcaaaaac ttaggttcac acatcaagct tctagcgatc tcacaacgcc ttctttcacc
    11761 tccacttaaa cttaaacctt tccttaaacg aataggctct atacttaaga gttcaagcat
    11821 ttgctcaact ttatcatgta aaattttttt atctttataa aaaatctgag ccgctaaaag
    11881 caggttatct tctacactta aatccttaaa aatactactt tcttgaggta aataacctat
    11941 ccctgatcta gctcttttgt ttaaaggatc ttttgtcaca tctaaaccgt ctaaaagaac
    12001 ttttccacta cttggggaaa taagtccaca tatcatataa aaagttgtcg tttttcctgc
    12061 accatttggc cctaaaagtc ctacaacttc tccgctatta acctctaaag aaattccatg
    12121 tataatctta gtttttttaa taattttttc taaatttaca atttctaatt tactcataaa
    12181 tttcatactt tcttttgtca tctttaatgc taattttaat ctggatagta gaaattccaa
    12241 atttcattaa agtttttttc aaattttcac cgccccattc aaccaaatgc aaaccttttt
    12301 caaaaaaatt ttcaaataaa ccattcgcta aaagtccttc taaaccttct tgataaatat
    12361 cataatgata aatgcaaata tcatgatttt catatctttg cataatggaa aaagttggag
    12421 aatccaccct tgcatcaaga ccaagaaatt taacccaagc ttgcactaag cttgtttttc
    12481 cgctagccaa atctccttga agcaaaacaa caccttcttt aggcattatt tgaagcatcg
    12541 ttttgatctc attttttgct aaaataaatt ctttcataat tttaccacat attcattttg
    12601 tgcgttttta ggaatacttt tcgtgctagg tatagctagg actttatatt tttgagtgta
    12661 ttcagtaaaa tgtaaagtga taatatcacc caccttaacc tctttactcg ctttaacaat
    12721 aacgccatta atccccacta caccactttt acacatatct tcagaaatag ctcttctttt
    12781 cgtgatatta actacattta aaaatttatc tactctcata aaagcaattt tagcaaaaaa
    12841 aatcaatttt tggaacaaaa tttgcttacg cctttgcttt attttttaag aaaatagcaa
    12901 gtaaaaactt ttctttaatg aaatttggat acaattttac aattttcaaa tctattttaa
    12961 caaaggatat cttatgaaaa atgaagtaaa aaaagtagtt ttagcgtatt ctggggggct
    13021 tgatacgagc attattttaa aatggcttca agatgagtat aattgtgaag ttgtaacttt
    13081 tacagcagat attggtcaag gtgaagaact cgaacctgca agaaaaaaag ccctttcttt
    13141 aggcataaaa gaagaaaata ttttcattaa agatttaaga gatgaatttg ttaaagatta
    13201 tgtatttcct atgtttagag ccaatgcgat ttatgaagga gaatatcttt taggaacaag
    13261 tatagcaaga ccacttatag caaaaactca agcacaaatc gccctgcaaa caggtgctga
    13321 tgcagtaagt catggtgcca caggtaaagg aaatgatcaa gtgcgttttg aacttggtta
    13381 tcttgctttt aatcccgatt taaaaatcat cgctccatgg cgtgagtggg atttaaacag
    13441 tcgcgaaaag ctccttgctt atgcacaaaa acacggtatt gatatttcta agaaaaaagg
    13501 aaaatctcct tattctatgg acgcaaattt acttcatatt tcttacgaag gacttgtctt
    13561 agaagatcct gcacacgcac ctgaagaaga tatgtggaga tggagtaaaa gcccaaaaga
    13621 tgctccaaat gaaagtgaaa ttatagaact tgatttccaa aaaggagatt tagtagcgat
    13681 aaatggagaa aaactaagtc ctgcaggact tttaaccaaa cttaacgaac taggctgcaa
    13741 acacggtata ggacgccttg atatagtaga aaatcgctat gtaggtatga aaagccgtgg
    13801 ttgttacgaa acaccaggtg gtaccatact tttaaaagca cacagggcgc ttgaaagcat
    13861 cacgcttgat agagaagcag cacacttaaa agatgaactc atgccaaaat acgcaagttt
    13921 aatttacaat ggctattggt tctcgcctga aagaatgatg cttcaagcct taatcgatga
    13981 gtctcaaatt cacgccaatg gcagagtaaa actcgagctt tataaaggca atgtgatggt
    14041 tataggacga gaaagttcga acgatagctt gtttaacgca gcttattgta cttttgaaga
    14101 agatgaagtg tataatcaaa aagatgcagc aggctttatc aagcttaatg ctttgcgttt
    14161 tatcatcgca ggaaaaaatg gaagaaaatt ttaataaagg aataaaatga aagtattatt
    14221 aatcaaagat gtaaaagcat ttggaaaagc aggagaaata aaagaagtaa aagacggtta
    14281 cggacaaaat ttcttaatcg ctaaaggctt tgctaaagca gctactaatg aagttttaag
    14341 aaaatatgaa agcgacaaga aaaaagaggc tgaaaattta cgctttgaaa tcgcaaattt
    14401 agaaaaactc aaagaagaac ttagcaaaat cactcttgaa atttcaaaac ccgtaggtgc
    14461 aaatggaagt ttgtttggtg gcgtaaccaa agatgaaatc gctcacgccc taaaagaaca
    14521 aagccatata gaaatcgata aaaaaagttt agaatgtgat accttaaaaa gcttaggagt
    14581 ccacgaagta agcgtaaaac ttggacacgc aatccatgct aaatttaaca taaatataaa
    14641 ggcagaataa tgtttcacgc aacaacgatt ttagcttaca aaggtaaaaa taaatccgta
    14701 attggcggag atggacaagt aagctttgga aatacggtgc taaaaggcaa tgctgtaaag
    14761 attagaaaac tcaacaatgg caaagtttta gcaggttttg caggatcaac agctgatgct
    14821 tttaatcttt ttgatatgtt tgaaaatctc cttcaaagtt ctaaaggcga tcttttaaaa
    14881 gcagcaattg acttttctaa agaatggaga aaagacaaat acctaagaaa acttgaagcc
    14941 atgatgcttg tacttgatag aaatcacatt tttctacttt ctggtacagg cgatgtggtc
    15001 gaacctgaag atgggcaaat cgcagccata ggaagtggtg gaaactatgc actttcagct
    15061 gctagagcct tagcaaaaca taccgattta gatgaagaag aacttgtaaa atcaagtctt
    15121 caaatcgcag gtgaaatttg catttatacc aataccaata tcaaaactta tgtaatcgag
    15181 gatgagaaat gaatctaact ccaaaagaaa tcgttaaatt tttagatgat tatgttatag
    15241 gacaaaaaaa agctaaaaaa atcatagcta tagctttaag aaatcgctac cgcagaatgc
    15301 aacttagccc tgagttgcaa gatgatatag tgccaaaaaa tatcttgatg ataggttcta
    15361 caggtgtagg aaaaacagaa atcgctaggc gtttagctaa aatgatgggc tttcctttca
    15421 tcaaaatcga agcaagtaaa tatactgaag taggttttgt aggtcgtgat gtagaaagca
    15481 tggtaagaga tcttgccaat gcagctttaa atttagtaaa aaacgaacaa agagaaaaaa
    15541 acaaagataa aatcgatgaa tttatagaaa ataaaatttt agaaaaactt ttgccacctc
    15601 taccaaaagg tatcagcgat gaaaaacaag aagaatataa aaacagtctt gaaaaaatga
    15661 gaactaaact aagaaatggc gatcttgatg aaagcgccat agagatagaa atttcacaaa
    15721 atatgtttga taccaatcct aacctacctc ctgaaatggg tgcaatgcaa gatatagtta
    15781 aggttatagg cgttggcagc aaaaaagtca aaaaagaaat gaaaatcaaa gacgctaaaa
    15841 atgctttaaa aaacgaagca ggagaaaaaa tcctagatca agaaagcatc aaaagcgaag
    15901 ccttaaaaag agcggaaaat gaagggatta tttttattga tgaaatcgat aaaatcgctg
    15961 tttcaagcgg aaattcaaac cgccaagatc caagcaaaga aggggtgcaa agagacttac
    16021 ttcctatagt cgagggatca aatgtacaaa caaaaatagg tactttaaaa accgatcata
    16081 ttctctttat cgccgcagga gcttttcatc ttagcaaacc aagcgatctt atccctgaat
    16141 tgcaaggacg ctttccttta agagtggaat tagatagtct tgatgataaa gctctttatg
    16201 aaattttaac acgccctaaa aattcacttt taaaacaata ctctcagctt ttaaaaactg
    16261 aaaatttaga acttgatttt aatgatgagg caattaaaga aatagcaaaa atagcttcaa
    16321 gagccaatga agaaatgcaa gatataggtg ctagacgctt acatactgtg atagaaaaat
    16381 tacttgaaga tttaagcttt gaagctgatg agtatgcggg taaaaaattc gtagtggata
    16441 aaaaaatggt agaagaaaaa ctcggagata tcatagaaaa taaagatctt gcaaggtata
    16501 ttttgtgaaa agtggctttg ttagcatcat agggcgtact aatgcaggaa aaagtacttt
    16561 aatcaattcc ttattagaag aaaaaatcgc cctagtttct cacaaacaaa atgccacaag
    16621 gcgtaaaatc aaagccatag tgatgcatga aaaaaatcaa atcattttta tcgatacccc
    16681 aggacttcac gaaagcggtg ctacgcttaa tcaactgctt gtccaaagtg ctattaaatc
    16741 catgggagat tgtgatgtga ttttatttgt ggcaagtgtt tttgatagta caaaagacta
    16801 tgaaaatttc cttagtctaa acccacaagt accacatatc atcgctttaa ataaagtaga
    16861 tttaaccgac aatgctacgc ttttaaaaaa acttagcgaa tatgcaaaat ttagccaaca
    16921 ttttaaggct atcattcctt attcttctaa gaaaaaaagc tataaaaaag gcttgttaga
    16981 tgagatagta aaataccttg atgaacatga gtatttttat gatcctgaat ttttaagtgc
    17041 gagtagcgaa aaagaacttt atagagattt catacttgaa agtatttatg aaaatttaag
    17101 cgatgagctt ccttatagta gcgaagtgct tatcaatcgc accaaagaca cacctaatct
    17161 tttaatccta gaagccaata tcatcacaga tacaaactct cacaagggta tgcttatagg
    17221 aaaagaaggg gcaactttaa aaaggatagg caaagatgca cgctttaaaa tttcaaaact
    17281 tgcacaaaaa aaagtacttt taaagctttt cataacagtg aaaaaaaact ggcaaaaaga
    17341 tgaagaattt ttaaaaaaac ttttaaatga tgaaaattaa ttcattaaat aaaataaatt
    17401 ttataaaatc tacagatttg ctttatgctc aaagaacagg aatatccaaa gaagacgaac
    17461 tttttaacaa tttaaccgca gattttaagc taagcaaacc ctttgactat caaatagctt
    17521 tttttaaaca taatgaaatt tatcattgtt ttttagcgcc tgtttacaaa ttgaaaaaaa
    17581 gtcgtttttg ctttcctgag cctttaattt ttcaagcttt gtttgatgaa agatttattg
    17641 aggaaagtga ttattgtgtt ttaaatttat atgatcaaac tttatattta tatttttacc
    17701 aagaaggaaa atttatcaat cttaaaaaaa tcgaaaattt caatccaggt aatatggatt
    17761 tattttttaa acaaaatcga tttacagaac ttttaaaaca ctatgaaagc aaattgctac
    17821 tttatcagga tttgaataca atcaaacatt acttctcatc tcaaataaaa tgtttaaatc
    17881 taaatgatat tcttgataaa aatagtttat tgaaattaag ttcatatagt ataaaaaatc
    17941 tag
//
LOCUS       DARGEY010000021        17920 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.021, whole genome shotgun sequence.
ACCESSION   DARGEY010000021 DARGEY010000000
VERSION     DARGEY010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17920)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17920)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17920
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.021"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            29..1048
                     /locus_tag="SF008_000637"
     CDS             29..1048
                     /locus_tag="SF008_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232925.1"
                     /translation="MNLKIFSIIVGILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNSYSPSIQTNNSSSDININNNTIQKQETNLLDENQSLNNNTFNTSISE
                     NNQSLNNNTNTSNNINTNENKQILDTDKEKLKQENKQAKIEALKKEISKQQKILERER
                     AVKKELQSNKSNKNKYLNTAREYLSIGKNSRLEPELSTENMKVYILDGKFLSQYRINL
                     LKDMLSVIQDNAKDYYLSIFVKMLPKGEMKLTIYNKEIIFSDMKKAYKYISLDRLSPY
                     LNNPKELNEHVAREEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEIIE
                     ISSIK"
     gene            1071..3683
                     /locus_tag="SF008_000638"
     CDS             1071..3683
                     /locus_tag="SF008_000638"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEG8232926.1"
                     /translation="MYDKNLEKEYYQICEERGYFEIDGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREKFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLVNAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYTKFVDKEVILPISKKAIKIIADKHVEKDFGTGVVKVTPAHDM
                     NDYEVGLRHNLDFISVFDEKGILNEHCLEFQGLERLEARERIVAKLKSLGFIEKIEEH
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSEKDLKDFYPNSLLITGFDILFFWVARMMFQSTNALHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNATNYLLLNESKFEDLENITLHSELAKYIYAKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVSIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIKDEIKAYMNFIIMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKISVELQNLRG"
     gene            3688..4698
                     /locus_tag="SF008_000639"
     CDS             3688..4698
                     /locus_tag="SF008_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEG8232927.1"
                     /translation="MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLENYQEGSLKVFDQEIKDLSQKKSKELRMLRKDIGMIFQNFALMERKNVFENV
                     AMPLRTHYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQ
                     RVAIARALALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVK
                     DIAQKALLLEHGQIIGSGAIDELFLRPNVKMKEFLGESDFLPEHGLNIKLYFPKEVAQ
                     NSVITHMARTLNIDFNIVWGKIEKLNGKALGNLVININEKDKDKVLDYIEKSGVLWEV
                     AS"
     gene            4695..5606
                     /locus_tag="SF008_000640"
     CDS             4695..5606
                     /locus_tag="SF008_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8232928.1"
                     /translation="MNEENISIVSAFFSRISQFFNEFSWQDIKEVSLSSITSFNENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLILLGVSIVINI
                     NNDENFFWQVIVFILFLGSLLYKGFKK"
     gene            5799..6572
                     /locus_tag="SF008_000641"
     CDS             5799..6572
                     /locus_tag="SF008_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8232929.1"
                     /translation="MKIKSLFIASILTLSLNANALETITVAATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKEGIKIAIPNDPTNESRALDIIAKKGLVKFKDKALKTPLDIID
                     NPKKIKFVELKPAQLPRALDDVDFAVINSNYALSANLNPAKDSVFIEDKESPYANILV
                     VRVGHENDPKIKALIQALQSDKIKQFIIEKYNGSVLPAF"
     gene            6621..7391
                     /locus_tag="SF008_000642"
     CDS             6621..7391
                     /locus_tag="SF008_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8232930.1"
                     /translation="MNLFKIIILAYILNLSSLFAQNITIGATPNPFGSLLELMKDDFK
                     NKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSPYVNYVVV
                     HSEDKNSEKTKVIDEILRSDKFKAIINEHYKDILIPAF"
     gene            7401..8177
                     /locus_tag="SF008_000643"
     CDS             7401..8177
                     /locus_tag="SF008_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8232931.1"
                     /translation="MNIKKIFLSVLFTISLSFGADKTIIIGATPTPYAEILNFSKPLF
                     QEKGWKLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTKLSSLGAIVLV
                     PMAIYSNSIKDIKDIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDIS
                     KNPKKLKFIELKAAQLPRALNDTDLAIITTNYALGAGLNPLKDGIFMEDKDSLYAIVL
                     ATRKGEETSQKSLVIKEILTSDKIKNFIIEKYKGSVIPTF"
     gene            8261..8923
                     /gene="flgA"
                     /locus_tag="SF008_000644"
     CDS             8261..8923
                     /gene="flgA"
                     /locus_tag="SF008_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HEG8232932.1"
                     /translation="MKIIFLTFFIVINYIQAASLEEIKTALAKEFRNNFPKIIISQID
                     LKITSLPKDFDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLK
                     SERAIKRGDKLGAFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKT
                     TALIRRNDPIIGILSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMI
                     IQ"
     gene            8920..9483
                     /locus_tag="SF008_000645"
     CDS             8920..9483
                     /locus_tag="SF008_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HEG8232933.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLSFKTE
                     NQANLEEICQENFKYTYFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQMGVIIAPPIIASYSKANNLE
                     QMENFIAGKWLDLLEIKHNLYEKWQNF"
     gene            9523..9999
                     /gene="coaD"
                     /locus_tag="SF008_000646"
     CDS             9523..9999
                     /gene="coaD"
                     /locus_tag="SF008_000646"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEG8232934.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPCY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVAHGGDVSSLVPKEILPFLKDQSCM"
     gene            9990..10568
                     /locus_tag="SF008_000647"
     CDS             9990..10568
                     /locus_tag="SF008_000647"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEG8232935.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPINKRAELLLFLADRAQHFEEILKTNQNKLIISDRSFISGMAYAKDFENDF
                     LFALNSFALENFFPQKIIFLKGDANLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISVEILTLDAKESKEKLHQQIKEFLQ"
     gene            10565..11791
                     /locus_tag="SF008_000648"
     CDS             10565..11791
                     /locus_tag="SF008_000648"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEG8232936.1"
                     /translation="MINALKGMKDLLDKDAYYYEKVIKTCEKVAKNYGFTFINTPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYHGSMFRYERPQKGRLREFHQFGVESLGIPNVYEDASIILMLVEIFSRLGIDFKLQ
                     LNSLGCSQCLPKYRDRLVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQNLLENAP
                     LLINNLCTSCQKDFETLQQILKDNGVKFELDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLGGKSGYGIGFAMGIERIITILEQKEEKIQREGIYLCAMDEIYIQ
                     KLLHIATNLRKEYKVLLSYEARKLAKHLENADKNNTEIFLCMGENEAQNESLFYKNLA
                     KKEEKMIKISDLKKVL"
     gene            11788..13623
                     /gene="speA"
                     /locus_tag="SF008_000649"
     CDS             11788..13623
                     /gene="speA"
                     /locus_tag="SF008_000649"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HEG8232937.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSM
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            13624..14262
                     /gene="cysE"
                     /locus_tag="SF008_000650"
     CDS             13624..14262
                     /gene="cysE"
                     /locus_tag="SF008_000650"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEG8232938.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGVWAVVNYRFAH
                     FFYIRNFKRIARMISGISQFLTGVDLHPGAELGRRIFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGTKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDVGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELENLILKQPESQK"
     gene            14435..15604
                     /locus_tag="SF008_000651"
     CDS             14435..15604
                     /locus_tag="SF008_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEG8232939.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QTIKNAAISAIEKGCGKYTAVAGIPEVLKAIQTKFKKDNNLDYETNEIITNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFIEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSEDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGKCDKDIEKMRQAFEKRRNLALDMLKQIPNISVYKPEGAFYLFVNIQKIEK
                     DSMKFCQKLLEQEKVAVVPGIGFGTDGYFRLSYATSDELIEKGLERISHFIANYK"
     gene            15610..16399
                     /locus_tag="SF008_000652"
                     /pseudo
     CDS             15610..16399
                     /locus_tag="SF008_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990380.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
     gene            complement(16423..16764)
                     /locus_tag="SF008_000653"
     CDS             complement(16423..16764)
                     /locus_tag="SF008_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEG8232940.1"
                     /translation="MKIIQWNGAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHVQVLSGKIWFEVEKEKFELNALDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     VQRVNAVLKKP"
     gene            complement(16834..17856)
                     /locus_tag="SF008_000654"
     CDS             complement(16834..17856)
                     /locus_tag="SF008_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG8232941.1"
                     /translation="MNLSFKTFDISNTQRSKAKKVQGKKYEIFLNENEHSLITPKVSF
                     KEILRYYYLYPKNAIPSFKLPFFKPDLSGFSTPHITWLGHSSLFISFKEYKILIDPVF
                     NTHASPISFINKAFKNAPVYNVNDFNEIFAVIITHSHFDHLDAKSVKALKEKARFFIT
                     PLKVGNYLKSYGVSEKKIIELDWWSGIEFGDLKIIATPAQHSSSRGDGKNKTLWASFV
                     MEFLSVDKRVFFSADGGYFTHFKKIGEYFGDFDLACLESGQFNIAWPYSHSFPEQILK
                     EAKDLNAKAVMPIHWGRFLAGTHAWNEVVKFLYENLDLPLITPKMGEAYEVGAKFKQD
                     FWWKEE"
BASE COUNT         6806 a         2603 c         2900 g         5611 t
ORIGIN      
        1 ttaactttct gtttttaagg gatagcaaat gaatttgaaa attttttcta ttattgttgg
       61 catattaatt gctgttattg tgatattagg tggaacatat tattatcttt ttgaatattc
      121 aaaaccaaag aattacacct taaataccaa cacttacacc gaacaaaaat cgtataccaa
      181 taactacgat aattcctatt caccctcgat ccaaaccaac aatagttcat cagatataaa
      241 tattaataac aataccatcc aaaagcaaga aacaaaccta ttagatgaaa atcaaagctt
      301 aaataacaat acatttaata catcaataag cgaaaacaat caaagcttaa ataataacac
      361 caatacaagt aataatatta atacaaatga aaataagcaa attttagata cggataaaga
      421 aaaattaaaa caagaaaata aacaagccaa aatagaagct cttaaaaaag aaatcagcaa
      481 acaacaaaag atcttagaaa gagaaagagc tgtaaaaaaa gaacttcaat caaacaaatc
      541 aaacaaaaat aaatatctaa ataccgctag agagtatcta agcataggaa aaaacagtcg
      601 tttagaacct gagcttagca cagaaaatat gaaagtttac attttagatg gaaaattttt
      661 aagccaatac agaatcaatc tgttaaaaga tatgctaagc gttatacaag ataatgcaaa
      721 agattattat ctaagtattt ttgttaaaat gctaccaaaa ggggaaatga aattaactat
      781 ctataacaaa gaaattatct tttcagatat gaaaaaagct tataaatata ttagtttaga
      841 tagattaagc ccatatttaa acaatccaaa agaattaaat gaacatgtag cacgtgaaga
      901 aattttagaa agacttaaac ttcaaattaa aaaagacggc aaaggaagtg atttttctaa
      961 acatatcaaa agtttgaaaa ctggacttaa tacagcacaa tatttcttcc cgttttgtga
     1021 aattatagaa attagctcta ttaaataagc taaaacaata aaggcaaata atgtatgata
     1081 aaaatttaga aaaagagtat tatcaaattt gcgaagaacg cggatatttt gaaatcgatg
     1141 gcaataaaac catacaagaa aaagataaaa atttctgcat tatgatgcct cctcctaatg
     1201 tcactggagt tttacacata ggacatgctt taacttttac tctgcaagat attatgacgc
     1261 gttacaaaag aatggatggc tataaggttc tttatcaacc agggcttgat cacgcaggta
     1321 ttgccactca aaatgttgta gaaaaacaac tccttgctca aggcattaaa aaagaagaac
     1381 taggtagaga gaaatttata gaaaaagtct gggagtggaa agagcaaagc ggtggaaaaa
     1441 ttttagacca aatgagaaca ctaggcatca ctcctgcatg gagtcgcttg cgttttacta
     1501 tggatgaagg tttggttaat gccgtaaaaa aagcctttgt agaactttat gataaaagac
     1561 ttattgtacg tggaaactac atgataaatt ggtgtaccca tgatggcgct ttaagtgata
     1621 tagaagttga atacaaagaa aacaaaggaa aactttatca tattaaatac tttttaaaag
     1681 atagcgatga atttttagta gtagccacaa cgcgtcctga aacttttttt ggcgatactg
     1741 cagttatggt gcatcctgat gatgaacgct atactaaatt tgtggacaaa gaagtgattt
     1801 tgcctataag caaaaaagcc attaaaatca tagccgataa acatgtagaa aaagattttg
     1861 gaacaggagt tgtaaaagtt actcccgctc atgacatgaa cgattatgaa gtaggactta
     1921 gacataattt agattttata agtgtttttg atgaaaaagg aattttaaac gagcattgtt
     1981 tagagtttca aggtttagaa cgcttagaag caagagaaag aatcgtagcc aaacttaaaa
     2041 gtcttggttt tatagaaaaa atagaagagc ataacaatca aataggatat tgttatcgtt
     2101 gcaacaatat agttgaacct tatatctcca aacaatggtt tgtaaaaaaa gaaatcgccc
     2161 aagaaagtat agaaaaagtt gcgcttggag aaagcaaatt ttacccaaat cactggataa
     2221 atagctttaa tgcttggatg aaagatttaa gagattggtg tatttcaaga caactttggt
     2281 gggggcatca aattcctgtg tattattgcg aatgctctca tgaatgggca agccaacata
     2341 cgcctaaaac ttgtccaaaa tgtcaaagtc aaaatttcaa acaagatgaa gatgtacttg
     2401 atacttggtt ttcttcagga ctttgggcta tgagtactct aggctgggga aatgaaaatt
     2461 ggggtaaaga taaaatttgg tctgaaaagg atttaaaaga tttttaccct aattctttac
     2521 tcattacagg ttttgatatt ttatttttct gggtggctag aatgatgttt caaagcacta
     2581 atgccttaca tcaacttcct tttaaagata tttatttaca tgctcttgtg aaagatgagc
     2641 aaggtagaaa aatgagtaaa agccttggaa atgtcatcga tccaaatgaa agcattaaag
     2701 aatatagtgc tgatatttta cgctttactt tagcacttct tgctatacaa ggacgcgata
     2761 ttaaacttag caatgataaa cttttacaag ttagaaattt tacaaataaa atttataatg
     2821 ctacaaatta tctgctttta aatgaaagta aatttgaaga tttggaaaat atcacacttc
     2881 attcagaatt agcaaaatat atttatgcca aatttcaaac ttgtgttaag gatgtaagag
     2941 aaaatttaga caattatcgc tttaatgatg cagccaatac tctatataaa ttcttttggg
     3001 atgatttttg cgattggggt atagagctta gcaaagccga aaaatcgagc gttaaagaac
     3061 ttggtagtat tttcaaagaa gctttaaaac ttttaaatcc tttcatgcct tttatcagcg
     3121 agtatttata ccacaaacta agcgatacag aacttaaaac aagcccttct attatgataa
     3181 gcaaatatcc aaaatttaaa gaacaagata aaaatataga aaaaatcttt tctttgctca
     3241 tagaaagcat agttagtatc cgccgtgcta aaagtttaat cgatcttgga aattctaaaa
     3301 tagaaaaagc ttatatcaaa tttaacgata aaaaaatcaa agatgaaatc aaagcttata
     3361 tgaattttat cataatgctc gcaaagtgcg agcaaataga atttagtgaa gaaaaattac
     3421 caaaggcaat atgtgatgtt agcgagaatt tagaaatttt tattacgctt gaaaatgttg
     3481 atttaagtgg tattttaaca agacttgaaa atcaaaaaaa taagcttgaa aaagaaagtt
     3541 tcaagcttaa ctccatgctt tcaaatgaaa aattcatcgc taacgcacct aaagaggtgg
     3601 tggagcaaaa taaagaagct ctagaaaatt taaaaattca acttgaaaaa atatcagttg
     3661 aacttcaaaa tctaagaggt taaaaatttg ataaaaataa aaaatttaaa aaaatattat
     3721 ggcaaggaac tcgtgataaa cgatgtttct ttggagatta aaaagggtga aatttacgcc
     3781 atagtaggtc atagtggagc tggaaaatcc actcttttaa gatgtattaa tggacttgag
     3841 aattatcaag aaggaagttt aaaagtcttt gatcaagaaa ttaaagattt aagtcaaaaa
     3901 aaatcaaaag agttaagaat gcttagaaaa gatataggga tgatttttca aaattttgcc
     3961 ctaatggagc gcaaaaatgt atttgaaaat gttgctatgc ctttaagaac acactatact
     4021 cagtgtaaat ttcatgccaa gctttttaat aaagaataca tgagcgaaaa agaaattgcc
     4081 caaaaagtca attccttact tgaaatcgta gggcttgatc ataaaaacaa atcctaccca
     4141 agagaactga gcggagggca aaaacaacgc gttgctattg ctagagcctt agctttaaac
     4201 ccaaaaattt tacttagtga cgaagctact tcggctcttg atccaaacac tacaaaaaat
     4261 attttagagc ttatatctaa aatcaatgct gaatttggga ttactgttgt tttagtaact
     4321 cacgaaatgg atgtggtaaa agacatagct caaaaagctt tattacttga acatggacaa
     4381 atcataggaa gtggagcaat tgatgagctt tttttaaggc ctaatgtcaa aatgaaagaa
     4441 tttttaggag aaagcgactt cttgcctgag cacggactta atatcaaact ttactttcca
     4501 aaagaagttg cccaaaatag cgtcatcact catatggcaa gaactctaaa tatagacttt
     4561 aacatagttt ggggtaaaat agaaaaactg aatggaaaag ccttgggaaa tttagttata
     4621 aatataaatg aaaaggataa agacaaggtt cttgattaca tagaaaaaag tggagtatta
     4681 tgggaggtgg catcatgaat gaagaaaaca tctctattgt cagtgctttt tttagtagaa
     4741 tttctcaatt ttttaatgaa ttttcttggc aggatattaa agaagtgagt ttaagttcta
     4801 tcacgagttt caatgaaaat tatgaaaaca ttttaaaacc tgcacttaat gaaacaattt
     4861 atatgagttt aatggctgta ctatttggat ttttattggc tatcattcct ggaattttac
     4921 ttgctatttg ggataaaaat ggaattaaag aaaataaaat cgcttatagt attttagatt
     4981 ttattaccaa tatattacgc gcctttccat ttttaattct tatagttgtt cttttaccac
     5041 tttctaaaat catagtaggc acaagcatag gtacaaatgc tgccatagtt cctttagcta
     5101 tcggaatagc tccttatttg gcaaagatgc ttgaaagcgc ttttaaagaa atagacaaag
     5161 gaatcataga agcagcaaaa agttatggtg ctagcaatat tcaaattatc ttcaaggtta
     5221 tctttagtga ggcccttcct gctataatta gcggaattac cctaactttg atctttacca
     5281 ttggtttttc tgctcttgct ggaactgtcg gtggtggagg tttgggagat gtcgctattc
     5341 gctatggtta tgaaagattt aacaaagaag ttatgattca aactgtagtt attttactta
     5401 tattagttca gttagttcaa attctaggta atttatttta tacttgggct aaaaatagta
     5461 aaactacata tatcattgcc actctattga ttttacttgg agttagtata gttatcaata
     5521 taaacaatga tgaaaatttc ttttggcaag taattgtttt tatcttattt ttaggaagtt
     5581 tgctttataa aggtttcaaa aaataaggag attatatctc cttttaagat aaatataagt
     5641 ttttttaagt aaaatttaaa caaaaaacta taaggaatta aaatgatgta tcagatgcgt
     5701 taatctgact atcaacaagt ttttatatac ttcttcctga tagtcagagt gaatttatta
     5761 agattaaagc aagcacaaaa tgactaaaaa ggaaaaaaat gaaaatcaaa tctttattta
     5821 tagcaagtat tttaacatta agtcttaatg caaatgcatt agaaaccatc acagttgcag
     5881 caactcccgt ccctcatgct gaaatcctag aacaagtaaa acctgattta gaaaaacaag
     5941 gctataaact tgaaatcaaa gaatttacgg attatgtttt acctaatcta gctgttgata
     6001 acggagaagc cgatgcaaat tttttccaac atactcctta tttggaagaa tttaataaaa
     6061 acaaaggcac caaacttatc aaagtagctg ccatacacat agaacctatg gctgtttact
     6121 ccaaaaaata caaaagtcta gatgatatta aagaagggat taaaatcgcc attccaaatg
     6181 atccaaccaa tgaaagtaga gctttagata ttattgcaaa aaaaggtttg gtaaaattta
     6241 aagataaggc tttaaaaaca cctcttgata ttatagacaa tcctaaaaaa attaaatttg
     6301 tagaattaaa gcccgcacaa cttccaagag ctttggatga tgttgatttt gctgtaatta
     6361 attccaacta cgctctctct gcaaatctaa atcctgcaaa agatagcgta tttatcgaag
     6421 ataaagaaag cccgtatgca aacattcttg ttgtaagagt gggacatgaa aacgatccaa
     6481 aaatcaaagc cttaatccaa gctctacaaa gtgataaaat caaacaattt atcatagaaa
     6541 aatacaacgg atctgtttta cctgcttttt aattttgtcc cttacctagg gacttttttc
     6601 ttaaatacaa aggagttttt atgaatttat ttaaaattat tatactcgct tatattctaa
     6661 atttatctag cctatttgca caaaacatta ctataggagc cactccaaat ccttttggta
     6721 gcttactaga actaatgaaa gatgatttta aaaacaaagg gtatgagctt aaaatagtag
     6781 aattttcaga ctatattttg cccaatcgtg cattagagga aaaagaactt gatgcaaatt
     6841 tatatcaaca caaacctttt ttagaagaat acaacctaaa aaaaggttca aatttaattg
     6901 caacaacgcc tgtacttata gctccagtag gagtttatag taaaaaaatc aaaaatttag
     6961 aaaatcttaa agaaggtgct agagttgcta tacctaatga tgcgaccaat gaaagcagag
     7021 ctttagagct tttagagaaa gcaaaattaa tagagcttaa caaaaatact ctaaaaaccc
     7081 cattggacat aaacaaaaat ccaaaaaaac ttaaatttat agaacttaaa gccgcacaac
     7141 ttccaagagc tttagatgat gttgatattg ctataattaa ttctaatttc gcacttggag
     7201 ccggtctgaa tccaagtaaa gatactattt ttagggaaga taaaaatagc ccttatgtaa
     7261 attatgttgt ggtacactca gaagataaaa atagcgaaaa aaccaaagta attgatgaaa
     7321 ttttaagaag cgataaattt aaagccatca ttaatgaaca ttataaagat atattaatcc
     7381 cagcttttta ggagtataat atgaatatta aaaaaatatt tttaagtgtt ttatttacaa
     7441 ttagccttag ttttggggcg gataaaacca taatcatagg tgcaacacca acgccttatg
     7501 ctgaaatttt aaatttctct aaacccttat ttcaagaaaa aggttggaag ttaatagtta
     7561 aggaatttaa tgactataat atacctaaca tcgctttaaa tgaaaaagat ttagatgcaa
     7621 atttatatca gcataaacct tttttagatg attttaatac ccacaaagga acaaaattaa
     7681 gttctttagg tgctattgtt ttagttccta tggctatata ttctaactcc ataaaagata
     7741 taaaagacat tcctaatggt gctaaaatcg ctatacctaa tgatgctacc aatgaaagca
     7801 gagctcttga tttactagct aaagcaaatt taatagagtt taaaagtcaa agcaccctta
     7861 aaacccctat tgacataagt aaaaatccaa aaaaacttaa atttatagag cttaaagccg
     7921 cacaacttcc aagagcccta aatgatactg atttggctat tattaccaca aactatgctc
     7981 ttggagcagg cttaaaccct ttaaaagatg gtatttttat ggaagataaa gatagtttat
     8041 atgctattgt tttagctaca agaaaaggtg aagaaacaag tcaaaaaagt cttgttatta
     8101 aagaaatttt aacaagcgat aaaattaaaa attttatcat agaaaaatac aaaggctctg
     8161 ttatccctac tttttaactc tatacaaagc cttctaaagg ctttgttaaa cttataaaag
     8221 ctaaaatact atttattgca ttataattct taggataaaa atgaaaatta tttttttaac
     8281 tttttttatt gtgataaatt atatccaagc agctagttta gaagaaatca aaacagcact
     8341 agctaaagaa tttagaaata attttcctaa aattataatt tctcaaattg atttaaaaat
     8401 aacatcattg cctaaagatt ttgatcaata tgaatttcta agaatcgcta atgggcgttt
     8461 taatcaagca caaggctttt taagggctga atttaaaact ccgcaaaata tacaaaaaaa
     8521 tgtatttttt agatatttca ttcaagcaaa tttagaagtt ttaaaaagcg aacgcgctat
     8581 aaaaagagga gataaacttg gagcttttga ctataaaagc gtattgattg attttgataa
     8641 agttccttta aatgccttaa ccttagatga tgtagataat cttgtagcta aaagcaatat
     8701 taacaaaaac gccattttaa gagcaaatat gtttaaaacc acagctttaa tacgccgaaa
     8761 tgatcctata atcgggattt taagcgaagc aaatgttgat gttttaatcg aacttgtggc
     8821 tttgcaaagt gcaaatatgg gcgaaaggat tcgtgcaaaa aacaaagaag gtaaagttat
     8881 gcaaggcatc gtagtgggta aaaataggat gattatacaa tgaaggtttt attaggaatt
     8941 tctggttcaa gcagtgtcaa tttaggctta aaattattaa aaaatctaga aaaccaatgc
     9001 gaactttatt gcattttaac ccaaggtgca aaacttagct tcaaaactga aaatcaagca
     9061 aatttagaag aaatttgtca agaaaatttt aaatacactt attttttaga tgataaaaat
     9121 ttaagtctaa gtgtagcaag tggatctttt ggaatagaaa aaaccatcat tgctccttgt
     9181 tcaatttcaa gtttagcaaa aattcacgct ggttttgcag acactctttt aatgcgtgct
     9241 gcagcagtgg ccttaaaaga aagaaaaaaa cttatcttag gcgtacgcga aatgcctttt
     9301 tctactttaa atttagaaca tatgttaaaa cttagccaaa tgggagttat tatcgcccct
     9361 cctattatcg caagctattc taaagcaaac aatctagagc aaatggaaaa ttttatcgca
     9421 ggtaaatggt tagatctttt agaaataaaa cacaatttat atgaaaaatg gcaaaatttt
     9481 tagtttaaat ttgttatatt tttaaaaaaa attggagcaa aaatgacttg tttatatcct
     9541 gggacttttg atcctattac caacgggcat ttagatgtta taaaacgggc tttaaaaatt
     9601 tttgatgaag tcatcgttgc catagcaaaa agtgaacata aaaaaccttg ctatgattta
     9661 gaaaaacgca aagaactagc cctgctcgca acacaaaatt taaaaaatgt taaaatcatt
     9721 gcttttgata atttacttgt agatttagcc aaagaattaa aagttaatac tataatccgt
     9781 ggacttagag cagtgagtga ttttgaatac gaattgcaaa ttggctatgc aaatcacgca
     9841 ctttgggaag atatggaaac catttatctt atgccaagtc taaaacatgc ttttatttca
     9901 agttctattg tgcgttctat agtagcacat gggggtgatg taagttctct tgttccaaaa
     9961 gaaattctac cttttttaaa ggatcaatct tgtatgtagt ttttgaaggt attgactgcg
    10021 taggaaaaag tacgcaaatt tcacttttaa aagaaattta caaagatgcc attttcacac
    10081 tcgaacctgg cggaacagaa cttggaaaac atttaagaga aattttactt aataaaactc
    10141 atcctattaa caaaagagct gaactcttgc tttttttagc tgatcgtgct caacattttg
    10201 aagaaatctt aaaaaccaat caaaacaaac tcattattag cgatagaagt tttatttcag
    10261 gcatggctta tgccaaagat tttgaaaacg attttctttt tgctttaaat agttttgctt
    10321 tagaaaattt ttttccacaa aaaattatct ttttaaaagg agatgcaaac cttatccaag
    10381 aacgcctcag tcaaaaagaa ctagatagta tagaaaaacg tggcattgag tattttttaa
    10441 gtgtacagga caaactcgaa aaagtgcttc attttttaaa agaaaaaatt tctgtagaaa
    10501 ttttaacact tgacgcaaaa gaaagtaaag aaaaattaca ccaacaaata aaggaatttt
    10561 tacaatgatt aacgctttaa aaggaatgaa agatttatta gataaagatg catattatta
    10621 tgaaaaagtg attaaaacct gcgaaaaagt agctaaaaac tatggcttta cttttatcaa
    10681 tacaccgcat ttagaacttt gcaccctttt taaaagaagc gtaggagaaa gttctgatat
    10741 agtaggtaaa gaaatgtatg aatttatcga taaaggtgaa aatcatgttt gcatgcgtcc
    10801 tgaaggaact gctggggtgg tgcgtgccta tatagaaaaa aaactcgata aaaacactag
    10861 tgtgaaaaga tggttttatc atggttctat gtttcgttat gaaagacctc aaaagggtcg
    10921 cttaagagaa tttcatcaat ttggagttga aagccttggc atacctaatg tttatgaaga
    10981 tgcaagcatt attttaatgc tagtagaaat tttctcacgc cttggtattg attttaaact
    11041 tcaacttaat tctttaggct gctcacaatg cttgccaaaa taccgcgata ggctcgttga
    11101 attcttagat tccaaagaag gtttttgtga agattgtttg cgtagaaaaa atttaaatcc
    11161 tattcgtgtc ttagattgta aaaatgagca ttgtcaaaat ttgcttgaaa atgctccgct
    11221 tttgatcaat aatttatgca cctcttgcca aaaagacttt gaaacactgc aacaaatttt
    11281 aaaggataat ggagttaaat ttgagttaga ttcaaaactt gtgaggggtt tggattatta
    11341 ttctaaaacg gcttttgaat ttataagcga tgaaatagga gcaaaggctg ctatcgcagg
    11401 tggaggacgc tacgatagac ttatagagta tttaggtgga aaaagtggct atggtatagg
    11461 ttttgccatg ggtatagaaa gaattataac tattttagaa caaaaagaag aaaagattca
    11521 aagagaagga atttatcttt gtgctatgga tgaaatttat atccaaaaac ttttgcatat
    11581 cgctacaaat ttaagaaaag aatataaagt acttttaagc tatgaagcaa gaaaactagc
    11641 caaacatctt gaaaacgcgg ataaaaataa tactgaaatt tttctttgca tgggagaaaa
    11701 tgaagcacaa aatgaaagtt tgttttataa aaatttagca aaaaaagaag aaaaaatgat
    11761 taaaatttca gacttaaaga aggttttatg atggattatg gtattgatat ttggggaaat
    11821 gaaaatttca ttatcaaaaa tggtaaagtt tgtatcaatt acgagaaaaa acctgctatt
    11881 attgatatag ttaaagaatt aagagatgat ggatacaagg ggcctttact tttaagattt
    11941 cctcatctta tccaaaaaca aattgaaaat atttacggaa atttcaataa agcaagaaag
    12001 gaatttggct ataaaggagg atttaacgct gtttatcctt taaaggtcaa tcaataccct
    12061 ggttttgtaa aaaatcttgt aaaacttgga aaagactata actatggact tgaagcaggt
    12121 tctaaggcag agcttttact cgctatggct tataataacg aaggcgcacc tattaccgta
    12181 aatggcttta aagatagaga acttatcaac ataggcttta tcgcagctga aatgggacat
    12241 aatatcactt taaccataga aggacttaat gaacttgaag ctatcataga catagctaaa
    12301 gaacgcttta aacctaaacc aaatataggc ttacgcgtgc gtttgcattc tgctggagtt
    12361 ggaatttggg caaaaagtgg tgggattaat tctaaatttg gacttacatc cactgaactc
    12421 atagaagcgg taaatttact caaagaaaac aaacttttag aacaatttac catgattcac
    12481 tttcatctag gctcacaaat taccgaaatt caccccttga aaaaagcctt aaatgaagca
    12541 ggaaatatct atacagaact tagaaaaatg ggagctaaaa atctaaaagc tatcaatctt
    12601 ggtggcggtt tagctgtgga atactcacaa tttaaaaatg aaaaaagtag aaattacacc
    12661 ctaagagaat acgctaacga tgtagttttt atcctaaaaa acatagccga acaaaaaaaa
    12721 gatttagagc ctgatatttt catagaaagt ggacgttttg tagcagctaa tcacgctgtt
    12781 ttaatcgctc ctgtattaga acttttttct caagaatacg cagaaaacaa actcatactt
    12841 aaaaaacaaa atccaaaact tatcgatgag ctttatgatc tttataaaag tataaaacct
    12901 tccaatgctt tagaatactt gcacgatagc atagatcatt tagagagtat tttaactctt
    12961 tttgatttgg gctatgtgga tttacaagat cgttccaatg ctgaaatttt aactcatttg
    13021 attacaaaaa aagccatctt gcttttaggc gataagcaaa atcctgcgga tttacttgcc
    13081 atacaagatg aagtgcaaga aaggtatttg gtaaattttt cgctctttca aagcatgcct
    13141 gatttttggg gtttagaaca gaatttcccc atcatgccac ttgatcgctt agatgaagaa
    13201 ccgacacgaa gtgcaagtat ttgggatata acctgtgata gcgatggaga aatttcatac
    13261 tctaaagata aacctttatt tttgcacgat gtagatgtag aaaaagaaaa ttattttcta
    13321 gggttttttc ttgtaggtgc ctatcaagaa gtacttggaa tgaaacacaa tctttttact
    13381 catcctactg aagctattat aagcatcaat gaaaaaggct atgaagtcga ggggattata
    13441 gaagcgcaat ccatacttga taccttagaa gatttagact atgatataca cgctatcatg
    13501 gatatactta atgaacgcat aagtaattct aagcttgtaa atgataagca aaaaaagcat
    13561 attttaggcg aactttatct tttcttaaat gataatggtt atttaaaaag cataggagtt
    13621 tagatgaatt tttggggtat tataaaagaa gatttttctc agccaaaggc acaagatcca
    13681 gcttttaatt cttgtataga actttttttt aattaccctg gagtatgggc tgtagtaaat
    13741 taccgctttg cacatttttt ttacataaga aattttaaac gcattgctag aatgattagc
    13801 ggaatttcac aattcttaac tggggtagat ttgcaccctg gagcagaact tggaaggcgt
    13861 atttttatag atcatgccaa tggagtggtt ataggtcaaa cagcaattat agaagatgat
    13921 gttttaattt atcaaggcgt tactttaggt ggaacaagcc ttgaaaaagg tactaaacgc
    13981 catccaacca taaaaaaagg agtgatcata ggctcaggcg caaaagtact tggcaatatc
    14041 accataggag aaaatgccaa aataggctca aatgctgtag tggttaaaga tgtaggtgca
    14101 aatttaactg ccgttggaat tcctgcttat attatcgaag agcgtaaaaa taaaaacatt
    14161 agagctatag atgcaaattg cgatgacaaa ctagaaaagt tagaaaagaa aattttagaa
    14221 cttgaaaatc ttatattaaa acaacctgaa tcacaaaaat aataattttt tataatacat
    14281 aaaattatat gtattattat gcgtattaat ttttcctaaa aaattaatac aaattttcac
    14341 atttattgaa atttataact catttttaaa ttaaatttat tgtaaaaatg caattttctg
    14401 ctaaaattaa acaaaaatta ttaaggattg aaaaatgctt acaaaaagat ctcaagtttt
    14461 agaagaatct atcactttag ctatcactgc acttgccaat gaacttaaag ccaaaggcga
    14521 ggatatcatt agtttttcag cgggtgaacc tgattttgac acaccacaaa ccatcaaaaa
    14581 tgccgctata agtgctattg aaaaaggatg tggaaaatac actgctgttg caggaattcc
    14641 tgaagtatta aaagctattc aaaccaaatt taaaaaagat aataatcttg attatgaaac
    14701 aaatgaaatc atcaccaatg taggtgcaaa acactctctt tttgaatgta tagaatgctt
    14761 agtagaaaaa gatgatgaag tgattatccc tagtccttac tgggtaagct atcctgaaat
    14821 ggtaaaattt gcaggtggaa aacctgtatt tatagaaggc ttagaagaaa atggctttaa
    14881 aattaccgct gaacaactaa aaaaagctat cacagctaaa accaaggttt taatgttaaa
    14941 ttctccttca aatcctgtag gatcgattta ttctaaagaa gaattaactc aaattgctaa
    15001 agttttagaa ggaactcaaa ttaccgtttt aagtgatgaa atgtatgaaa aacttcgcta
    15061 tgatggtttt gattttgtag cttttgcaag tgtaagcgaa gacgctttaa aacgtactgt
    15121 gactattaac ggacttagca aatgtggagc tatgccagga tggcgttttg gctatatggc
    15181 aagcaaaaat aaagccctaa tttcagccgt taaaagactt caaggacaaa gcacttcaaa
    15241 tatttgctcc attactcaac atgcagccat tcctgcttta aatgggaaat gtgataaaga
    15301 tatagaaaaa atgcgtcaag cctttgaaaa acgccgtaac ttagctttag atatgcttaa
    15361 acaaatccca aatatcagtg tttataaacc agaaggtgct ttttatcttt ttgtaaatat
    15421 acaaaaaata gaaaaagatt ctatgaaatt ttgccaaaaa ttacttgaac aagaaaaagt
    15481 tgccgttgtt ccaggcatag gttttggcac ggatggatac tttagacttt cttatgccac
    15541 aagcgatgaa ctcatcgaaa aaggtttaga aagaataagt cattttattg caaattataa
    15601 gtagtttcca tgaaaagacc tttacctttt atacttgcag ctacaaataa tggatctatg
    15661 attattaatc atcttgatag acatgatacg cctcaaggaa gttatggagt tggttttcag
    15721 tttttaaatt acggcagttt tgatccagag gaaattgatc tttgtattaa tcttttaaaa
    15781 ttacgcagag aatactacaa agataatgtc tttgccatag attgcggtgc aaatattgga
    15841 gctcacacta ttaagtgggc tatagaaatg cataactggg gggggggtat tagcctttga
    15901 agcacaagaa agactttttt atgctttagc aggaaatata gcaattaata attgttttaa
    15961 tgctaaggca atacatgcag ccattggaaa ccctgaaaaa aatcaaaatg aacttgaaat
    16021 tttaactcct gattatactc aaaaagcttc ttttggaagc ttagaattaa aatctcaaaa
    16081 caataatgaa tttataggac aaatacctca aaaaaaagaa aaagttcctt atttaaaact
    16141 tgataattta aattttaaaa gattagatct tattaaaata gatgtagaag gcatggaaca
    16201 agaagttata ttaggatgtt taaatcatat taaaactttt aaacctattt tacaaattga
    16261 aattattaaa tcaaacactc gagatattat caatatatta gaaaatttag aatatgaaat
    16321 ttttcaatcc ggaattaata tcttggctat ttataaggca gatcctgtaa ttaaccattt
    16381 aagttcttca aacccataaa ccttaaaata aaaggcttat ggctaaggct ttttaagcac
    16441 agcatttacc ctttgaacac tatctgattt atttaaactc aatcttatta tagaattttc
    16501 caatccacct aaagaatgcg ctacatttgc ctctaggctt atcatatcca aagcatttaa
    16561 ttcaaatttt tccttttcca cttcaaacca aattttaccg cttaaaactt gaacatgtat
    16621 agcaaaagga gctttatgct ctttcatcac gctatcttta gctaataaaa tttgaatttc
    16681 tttacctttt tcattatcaa ttaaaacatt gattttcact tcttttgggc taaattccgc
    16741 tccattccat tgaatgattt tcacaaaatc tcctttttta gttttataaa actatagcaa
    16801 aagccaaaat ataaattata aacttgtgtt aatttattct tctttccacc aaaaatcctg
    16861 tttaaattta gctcctactt cataagcctc gcccattttt ggtgtgataa ggggtaaatc
    16921 taaattttca taaagaaatt ttaccacctc attccatgca tgagttcctg ctaaaaatct
    16981 cccccaatgt ataggcatga cagcttttgc attaagatct tttgcttctt ttaaaatttg
    17041 ctcaggaaaa gagtgtgaat atggccaggc gatattaaat tgtccgcttt caagacaagc
    17101 taagtcaaaa tctccaaaat actcacctat ttttttaaaa tgtgtaaaat accctccatc
    17161 tgcgctaaaa aacactctct tatctacact taaaaattcc atcacaaaag aagcccaaag
    17221 ggttttgttt ttaccatctc ccctgcttga actgtgttgt gcaggtgttg caatgatttt
    17281 taaatcacca aattctatgc cgctccacca atcaagctct atgatttttt tctcactcac
    17341 cccatagctt tttagataat ttcccacttt taaaggtgtg ataaaaaatc gtgctttttc
    17401 ttttaaagct ttgacactct tagcatctaa atgatcaaaa tgtgaatgcg tgataatcac
    17461 agcaaaaatt tcattaaaat catttacatt ataaacagga gcatttttaa aagccttgtt
    17521 aataaaagaa ataggcgaag catgagtgtt aaaaacagga tcgatcaaaa ttttatattc
    17581 tttaaaactt ataaaaagcg aagaatgtcc aagccaagta atatgcggag tgctaaaacc
    17641 actcaaatca ggcttgaaaa aaggtaactt aaaagaaggg atggcatttt ttggataaag
    17701 ataataatac ctcaaaattt ctttaaaaga cactttagga gttataagac tgtgctcatt
    17761 ttcattaaga aaaatttcat attttttacc ctgcactttt ttagcttttg atcgttgtgt
    17821 attggaaata tcaaaggttt taaatgataa attcaaattt ttccttttat gtttattaag
    17881 attatatcta aaaagttttt agattaattt tattttattg
//
LOCUS       DARGEY010000022        16976 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.022, whole genome shotgun sequence.
ACCESSION   DARGEY010000022 DARGEY010000000
VERSION     DARGEY010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16976
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.022"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            59..193
                     /gene="rpmH"
                     /locus_tag="SF008_000655"
     CDS             59..193
                     /gene="rpmH"
                     /locus_tag="SF008_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEG8232942.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            190..516
                     /gene="rnpA"
                     /locus_tag="SF008_000656"
     CDS             190..516
                     /gene="rnpA"
                     /locus_tag="SF008_000656"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEG8232943.1"
                     /translation="MKNFDKFSTNEEFSSVYKVGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFVAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            513..854
                     /gene="yidD"
                     /locus_tag="SF008_000657"
     CDS             513..854
                     /gene="yidD"
                     /locus_tag="SF008_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEG8232944.1"
                     /translation="MICLKILRFYQKFLSPLKPAACRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRILRCNPFFKGGFDYPRVSKNFYPINLCFKPIFLAEKQLCFLYIPYKNKSFY
                     LIKIIFKRTNQ"
     gene            851..2437
                     /gene="yidC"
                     /locus_tag="SF008_000658"
     CDS             851..2437
                     /gene="yidC"
                     /locus_tag="SF008_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEG8232945.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVIYDYFFIPKQPLKIEQNIT
                     QKNQQNTSINNTPNIQNTTTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLK
                     DRKYQNEKGEFINLISKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQV
                     LKLTQNLSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALV
                     MDNKETIETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDVNQNPI
                     VFAYSDNEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIG
                     NWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMME
                     LYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILP
                     ILMGATMFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLV
                     QQWVINKIFAKEHHKKTSGA"
     gene            2441..3259
                     /locus_tag="SF008_000659"
     CDS             2441..3259
                     /locus_tag="SF008_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HEG8232946.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFTSSKNHKPETHEPKQENKIETKNEKNKSQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYDEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQNVIEK
                     IKIHGRGQTKPLDGVLIKIALEQLRAEFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            3252..4580
                     /gene="mnmE"
                     /locus_tag="SF008_000660"
     CDS             3252..4580
                     /gene="mnmE"
                     /locus_tag="SF008_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEG8232947.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGKLLEKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK
                     DAIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL
                     ENVFKNTQNKNFIKLSAQKDITLLKEELQNYFNSFDSEGIMVSSLDLINACKISSEAI
                     FRAKGLLEESSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK"
     gene            4591..6777
                     /gene="purL"
                     /locus_tag="SF008_000661"
     CDS             4591..6777
                     /gene="purL"
                     /locus_tag="SF008_000661"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEG8232948.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGNIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDKTPIRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVIGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPISEPKYLSEIKDYKFE
                     LKLSIQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGRLGASAIRIKENGASVA
                     MAIECNSRLNYVNPKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKASFEK
                     ENLSVYLLGESLGEFGGSMVMKIQDKKVSGSLKELDYKAEIALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKMFAISSVGVNLTSGFDDEKMIFDESASRAIVGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDNIELSKAELDKLYFESFKEQIQ"
     gene            6774..7544
                     /locus_tag="SF008_000662"
     CDS             6774..7544
                     /locus_tag="SF008_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family molecular chaperone"
                     /protein_id="HEG8232949.1"
                     /translation="MTLVLIILVILVFYWYYKTWGKQDFLNSATRGAKGFAKGFARGV
                     MEERMDEFKRRMNYYVIALLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSSKKELSLDEAFTILELPNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEKLKIGVEKFQKINEAYEKVKKHLER"
     gene            7547..9079
                     /gene="purH"
                     /locus_tag="SF008_000663"
     CDS             7547..9079
                     /gene="purH"
                     /locus_tag="SF008_000663"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEG8232950.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLDFEILSTGGTFKLLKENGIKV
                     IEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQND
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFSANFKALKGEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAVF
                     EGKKRIKIFTQESPFLIRGFDKYDFKHIDGGFVYQNSDEVGEDELKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAKAKEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHF
                     LH"
     gene            9178..9639
                     /locus_tag="SF008_000664"
     CDS             9178..9639
                     /locus_tag="SF008_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232951.1"
                     /translation="MFKTIGFKVSAAIFVVLLISFIVMQVILNLDFKNTANKMSRANL
                     NTVSTSVFQTMRMAMNLGDPEKIKEAIEDVKSIEGISDIKIYPSKDTIDLFEMKAPQI
                     SNDKRIIEQFSNPKIQALEENINGVVYLRLIRPLIADESCVTCHEMLMQEV"
     gene            10096..10629
                     /locus_tag="SF008_000665"
     CDS             10096..10629
                     /locus_tag="SF008_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEG8232952.1"
                     /translation="MSNKANSANEKSFLLLEQMLKSLFNVANKVSIVSQNENELAKKV
                     ENMVNQAGSIQKATRMMDKIADKTKLPSLNAGIEVARAGAFGLGFSVIAEDDRQLAQN
                     SEEFLGNVAQITKELLQSINEVNAELKKNTQSIQALNDDTALLVDDANEVKLCNEDAR
                     ALVTQCTEKIKISQENI"
     gene            10645..10764
                     /locus_tag="SF008_000666"
     CDS             10645..10764
                     /locus_tag="SF008_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002908971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCP-domain signal transduction protein"
                     /protein_id="HEG8232953.1"
                     /translation="MQENVEVSEKNEEISKILLQVADELKIVCHNLESELNQF"
     gene            10780..11214
                     /locus_tag="SF008_000667"
     CDS             10780..11214
                     /locus_tag="SF008_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HEG8232954.1"
                     /translation="MKKTLQIALAATFFAGCASTSVTSSTSKGNNELVQDQLFKIEKI
                     IVNGKTFDPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADTLQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGIFKISNENGKLVLSNDEMKIFFK"
     gene            11313..12290
                     /locus_tag="SF008_000668"
     CDS             11313..12290
                     /locus_tag="SF008_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HEG8232955.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKVVS
                     EFQKVLLIAPKQSDFENFKDIKNVEYFKCDTNDTWIRDFGAIDIVENGRLKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNEN
                     RNSHLNKTQIDIKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLVELPIPKPLYYEGRRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPSHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            12287..13174
                     /locus_tag="SF008_000669"
     CDS             12287..13174
                     /locus_tag="SF008_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEG8232956.1"
                     /translation="MSLQKKATLVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTAFSAFKIIKKALAFLMDEALPKEQVDKICTLI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            13171..14043
                     /locus_tag="SF008_000670"
     CDS             13171..14043
                     /locus_tag="SF008_000670"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HEG8232957.1"
                     /translation="MKIALIQQKFHLNKEQTIKKTCEFIEEASKQGAELVCLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLIASLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWFNKDKDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSGVEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFADLTKRFID"
     gene            complement(14055..15401)
                     /locus_tag="SF008_000671"
     CDS             complement(14055..15401)
                     /locus_tag="SF008_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEG8232958.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHHENLEQKNENQHYAKLEY
                     EQNVSILPQFTYNINFDAKRYKKYFFNPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFF
                     NKQIIPLSWFKNAINNANIQEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIP
                     FDYASDGILNTGAPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSNDRAKIYENLN
                     FITPLKEKFAIYSEDGKFFFESRIGAIYPYYKEDKNYFYGKIGSKKYKISKKDVSKFP
                     LQFNDKNLKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPRNSAAQKNSFN
                     HFDISTLSNSQKKDFLNRFGKAYLSLLYLPGHIMLYAGQITDNNIAIHNIWGLRKDAT
                     QRLLISSSVITSLEIGKNEILEDNLLLSRLKEISFINLNEQEKEQIKSYLENIQNK"
     gene            15450..16793
                     /gene="pif1"
                     /locus_tag="SF008_000672"
     CDS             15450..16793
                     /gene="pif1"
                     /locus_tag="SF008_000672"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HEG8232959.1"
                     /translation="MLDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGYCDDMMKLSALDRNQKQKEKLTKLKELLKTIELII
                     IDEISMVSANVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYAFSS
                     FFWQDLNFKNIKLSQPKRTQNMEFYNHLSLIRQGFLDEKILSFFESLRIDYKELENLE
                     DDYTLLCGINKKVNNINQEKLSKLETPLVCFKAQVKKEDKRIKDEELDSWIRSLNILE
                     ELNIKIGARIIFCVNNWDKNYYNGEQGIIEDILYEEEKIYISIIKNNGMKILLEPYTF
                     FMEELEQSGKDFVVNILASVTQFPIKLAYAITIHKSQGMSIEKLVCDIDHIFENGQLY
                     VALSRATNPNTLKIYSTKKINFGFYFANILKIDSNVIEFYKKHNFLDLEIQEQII"
     gene            16803..>16976
                     /locus_tag="SF008_000673"
     CDS             16803..>16976
                     /locus_tag="SF008_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232960.1"
                     /translation="MKKIFLSVFLVLSLNAQNLEIDKIRTDLYSKSGTNVLKKVEISL
                     EFDGNNLKENENKL"
BASE COUNT         6137 a         2045 c         3142 g         5652 t
ORIGIN      
        1 ataagtaaga ttaagataaa atacaagttt attttataat tttttaagga aaaatcaaat
       61 gaaaagaact tatcagccac atggcactcc aagaaaacgt actcatggtt ttcgtgttcg
      121 tatgaaaact aaaaatggtc gcaaggtgat caatgcaaga cgtgctaaag gtagaaaaag
      181 acttgctgtg tgaaaaattt tgataaattt agcacaaacg aggaattttc atctgtatat
      241 aaagtaggta aaaaatggca ttgcgaaggt gtgattattt tttatctgaa tagttatgaa
      301 aaaaaaatag cagttgttgc tagtaaaaaa gttggaaaag cagtggttag aaatcgttca
      361 aaacgaattt taagggcttt gtttgctaag tttgaaagat atcttcaaga tggcaaatat
      421 atttttgtag ctaaaaatga aatcactgaa ctttcttttt ctaggttaga aaaaaatcta
      481 aaatggggat tgaaaaaact agaatgtttc aaatgatatg cctaaaaata ctccgttttt
      541 atcagaaatt cttaagccct ttaaaacccg ctgcttgtag gtattatcct agttgttctg
      601 agtatgcgct ttggcagttt caaaaaaaga atttttttct agcttttttt tctacttttt
      661 ttagaatttt aagatgcaac ccttttttta aagggggttt tgattatcct agagtttcta
      721 aaaattttta tcctataaat ttatgtttta agcctatatt tttagcagaa aaacaacttt
      781 gttttttata tataccttat aaaaataaaa gtttttatct tataaaaatc atctttaaaa
      841 ggacaaatca gtgaataatt caaataatat ttttcagcaa aagcgtatac ttttagctgt
      901 tgtgatttct tttttatttt ttgttattta tgattatttt ttcattccaa agcaaccttt
      961 aaaaatagaa caaaacatta cacaaaaaaa tcaacaaaac acaagcataa ataacactcc
     1021 taatatacaa aataccacca caaatactcc aagtgcggct ttagtttcgc aagatagtgt
     1081 gatatctaag gttcaaagca agcattttga agcacaaatt gactcttttg gtagaatttc
     1141 tgctttttat ttaaaagata gaaaatacca aaatgagaaa ggggaattta taaatcttat
     1201 tagcaaggaa aatagtcctt atcctttaga aatgcgtttt agtgatccaa gtattaactc
     1261 agaggctttt aaaattcctt atgtcgctaa cgctagcaat ctttttgttg atgaaaatgg
     1321 aagtcaagtt ttaaaactca ctcaaaatct ttccggattg aaaatcgaaa aagatattac
     1381 tttttatcca aaagggaatt atgagataga agttaaactc agcaagaatg caaattattt
     1441 tataagtcca ggatatcgtc caaatattgc cgtagatagt tatacggttc atggtgcttt
     1501 agtaatggat aataaagaaa ccatcgaaac ttataaagat ggagatgtag aaaaggatga
     1561 aagtgctaat aatgtcgtaa tgacttcggc ttttgataga tactatgcaa ctttctttta
     1621 taattttgat aaacctttaa atgtggcaat cagcaaggat gttaatcaaa accctatagt
     1681 ttttgcttat agtgataatg aatttaaagc agggggctat ataggctcta aagaacatgt
     1741 gattttaaga agtatagatc cacgccttga agcagttgtt gaatatggtt ggtttacttt
     1801 tattgctaag cctatgtttg agtttttgaa tttcttgcat cagtatatag gaaattgggg
     1861 ttgggctatc gttgtgatga ctttaattgt gcgtattatt ttattcccgc taacttataa
     1921 gtctatgatt tctatgaata aacttaaaga tcttgctcct aaaatgaaag atattagaga
     1981 gcgttataaa ggcgatccac aaaaaatgaa tatgcacatg atggagcttt ataaaaaaca
     2041 tggtgcaaat cctatgagtg gttgtttgcc tatactttta caaattccta ttttctttgc
     2101 tatttatcgc gttttgctta atgctattga gctaaaagca gctccttggg cgttttggat
     2161 acatgattta tcggtaatgg atccttattt cattttgcct attttaatgg gtgcaacgat
     2221 gtttttacaa caacttatta cacctatgac tatacaagat cctatgcaag ctaagattat
     2281 gaaattttta ccagtgattt ttactttttt ctttatcact ttcccagcag gacttacgct
     2341 ttattggttt gtaaataacc tttgttcttt ggttcaacaa tgggttatca ataaaatatt
     2401 tgctaaagaa catcacaaaa aaacaagcgg agcatgaaaa atgaaaatcg aagccattga
     2461 tcttcaaagt gccttaacag aagcttcaag aagtttagaa tgttctgtga tggacttaga
     2521 atatgagatt attcagcatc caagaaaagg tttttttgga tttggaagaa aaaaggcaat
     2581 tatagaggct aaagcaaaaa aaaggatttt gaaaaaaaat cctaaaaaag aatttacaag
     2641 ttcaaaaaat cacaaaccag aaacacatga gccaaaacaa gaaaacaaga ttgaaacaaa
     2701 aaatgaaaaa aataaaagcc aaaaagaaaa atatacagta aaaagtgatg aaatttttga
     2761 tagttttcat cgagaaagca aaggagtgcg taatactcag gatattttag atgagattcg
     2821 cattcagctt gtaaaacttt tagaaagctc ccagtttaaa atagagctta gtgaacttag
     2881 aatgtatgat gaagattgcg ttttgattcg attggatggg gaagatgctg ctttgatgat
     2941 aggtaaagaa gcacatcgtt acaaggctat ttcttatctt ttacataatt ggatcaattt
     3001 aaaatataat cttttagtgc gccttgagat cgctcaattt ttagaaaatc aaattcaagg
     3061 tatgcagctt tatttacaaa acgtgattga aaaaattaaa attcatggac gcggacaaac
     3121 caaaccttta gatggggttt tgataaaaat cgctttagag cagttaagag ctgaatttcc
     3181 agataagtat gtaggaatta agcaaaataa tgatcaaaga tttgttgtaa taaacgactt
     3241 tttcaaaaaa gatgagtgat actatagcgg ctattgccac agctcatggt gtgggttcga
     3301 tttctattgt aagattaagc ggtgaaaggg ctttagaatt tgccttaaag cttagccaca
     3361 aaaccaaact taccccacgc catgctactt ttacaaaact ttttaatcaa aataatgaaa
     3421 ttatcgatga agctataatg atatatttta aagcccctta tagttttaca ggggaagata
     3481 tagtagagtt tcaaactcat ggaggattta gtgtgagtga agttttactc gaagaacttg
     3541 tgagtttagg agcaagactt gctttagcag gggaatttag caaaagagcg tgtttaaatg
     3601 gcaaaatgac tcctttaaaa gctttaaata tacaagatct catactttca aaatctgcac
     3661 ttgcagctaa aattatagca cgcaacatgc aaggaaactt aggaaaactt ttagaaaaaa
     3721 ttcgcacaga tttggttaaa accttggctt ttgtagaaac tagcattgat tatgctgatg
     3781 atgatttacc ttctgattta ttagaacaaa tttctactat gtgtgaagaa aattctaaaa
     3841 ttttaaaaga aatttataca ctttctcaaa gcaaaaaagg acttatagaa ggttttaaaa
     3901 tcgctattgt aggtaagcca aatgtaggca aatcttcgct tttaaatgcc ttgctttctt
     3961 atgaaagagc tattgtttca gatatagcag gcaccactcg tgatactata gaagagagct
     4021 ttaaattagg aacgcattta ttacgcatta tagatacagc aggtattagg gaaagtaaag
     4081 atgctataga acaaatcggc gtagctttaa gtaaaaaaag tttagaagat gcagatatta
     4141 ttttggcagt ctttgatgct tcaagagtgc aagataaaga agatgagaaa atttttgact
     4201 tattagcaaa tactgataaa aaaatctttt ggattttaaa taaaagtgat ttagaaaatg
     4261 ttttcaaaaa tactcaaaat aaaaatttta tcaagcttag tgctcaaaaa gacatcactt
     4321 tattaaaaga agaattgcaa aattatttta attcttttga tagcgaaggt attatggtaa
     4381 gttctttaga tcttattaat gcttgtaaaa tttcaagtga agcgattttt agagctaaag
     4441 ggcttttaga ggaaagttct ttagaacttt ttgcttttga gcttaattta gcgattaatg
     4501 aacttgcaag atttaccaaa gattttcaaa gagatgaaat tttagacgaa atgtttggta
     4561 atttttgttt aggaaaatga aaggataaaa atggacaaag aaaccataaa agcacataaa
     4621 atcagtgatg aagaatatgc acaaatttta gaaattttag gacgcgagcc aaatttatta
     4681 gaacttgggg ttatttctgc gatgtggagc gagcattgct cttataaatc cagtaaaaaa
     4741 tatcttaatg gttttccaac taaagcacct tgggtgattc aaggcccagg agaaaacgca
     4801 ggggttattg atattgggca aggtatggca gcagttttta aggtagaaag tcacaatcat
     4861 cctagcttta tcgagccttt tgcaggtgcg gctacgggag tagggggaat tttgcgtgat
     4921 gtttttacta tgggtgcaag agtggttgca gggctaaatt ctttaaaatt tggcaatatt
     4981 catgatgaaa aatgcggcaa acatcaaaaa taccttgtta aaggtgtggt aaatggaatt
     5041 tctcattatg gaaattgtat gggtgtgcca actataggtg gagaatgtgc ttttgatgag
     5101 tgttttaatg gaaatatctt agttaatgcc tttgctttag gggtttgtaa aagtgaagat
     5161 atcttttatg ctaaggctga aggtgtagga aatcctgtga tttatgtggg ttcaaaaaca
     5221 gggcgtgatg gacttggtgg agcggttatg gcaagtgata gcttcaatga agaaagcaaa
     5281 tctttgcgtc ctacagtgca aattggcgat cctttcagtg aaaaacttct tatggaagct
     5341 tgtttagagc tttttaaaac tgattatatt gtgggtattc aagatatggg tgctgcaggg
     5401 cttacttcaa gttcttttga aatggcagga agaagtggca gtggcatgaa actttactta
     5461 gataaaactc ctatacgtga aagcggtatg actccttatg agttaatgct tagcgagtct
     5521 caagaaagaa tgcttatttg tgcgaaaaaa ggctatgaag ataaggttat agaaattttc
     5581 aaaaaatggg atttagatgc tgtggttata ggtgaagtta ccaatacagg aaaaatggag
     5641 cttttttggc atgatgagct tgtagggctt attcctatcg agcctctaag tgaaaaagcg
     5701 ccgattttaa gtcgtcctat aagtgagcca aaatatttaa gtgaaattaa agattataaa
     5761 tttgagctaa aattaagcat tcaagagctt tttatacaaa tgcttcaaaa tgaaaatatt
     5821 aacaacaaag cttttattta tgatcaattt gattcaagtg tgcaaaccaa tactataaaa
     5881 gctgatggaa gattaggtgc tagtgccatt cgtatcaaag aaaatggtgc aagtgtggct
     5941 atggctatag aatgtaactc acgcttaaat tatgtaaatc ctaaaatagg agcagcttta
     6001 gcagtagctt cagcaggaag aaaagttgct tgcacggggg ctaagccttt ggcaataagt
     6061 gattgtttaa attatggaaa tccgcaaaat cctgaagtga tgtggcaatt tgcacaaggt
     6121 tgcgaaggca ttaaagaagc ttgtaaagag ttaaataccc cagtagtaag cggcaatgtt
     6181 tcactttata atgaaactga aggcgtaagt atttatccaa gtcctactat agtaagcgta
     6241 ggggttttag aagatgcaaa taaaacctta aaagctagtt ttgaaaaaga aaatttaagt
     6301 gtttatcttt tgggtgaaag tttaggggaa tttggtggat ctatggtaat gaaaatccaa
     6361 gataaaaaag tatcaggaag tcttaaagag cttgattata aagctgaaat tgcactttgg
     6421 gatttgcttt ataaagccaa tcaaaattct ttacttgagt gtgccaatag cgtaggaata
     6481 gggggtattg ctatgacttt ggcaaaaatg tttgctattt ctagtgtggg tgtaaattta
     6541 acaagtggtt ttgatgatga aaaaatgatt tttgatgaga gtgcaagtcg tgctatagta
     6601 gggcttagca aagaaaatga agaagctttt ttaaatttag ccaaagaatt tggagtaaaa
     6661 gcttataaat taggtgtgag tacaagccaa aaacatttta aacttgataa cattgagtta
     6721 agcaaggctg aacttgacaa gctttatttt gaaagtttta aagagcaaat ccaatgactt
     6781 tagttttaat tatactcgtt attttggtgt tttactggta ttataaaact tggggaaaac
     6841 aggatttttt aaactcagct acaagaggag ccaaaggctt tgctaagggt tttgctcgtg
     6901 gggttatgga agaaagaatg gatgagttta aaaggcgtat gaattactat gttatcgcac
     6961 ttttggcaaa aattgcaaaa agtgatggta gggtaagtga aaatgaagct gaaatgatca
     7021 aagatctttt agatgcaaat gccaaagatg aaaaagaaag agctttttta aaagcaagtt
     7081 ttaatgaaca taaagaaaat ttaagtgatg ctttttatgt ggcaaaagat tttttaaaag
     7141 aagtgccttt gcctaaaaat gagcgtttta atgtcttgcg tgtgcttgtt tttatggctt
     7201 taatcgatgc agattttaat gctaaaaagc gtgaaatttt agagcaaatc gctaaagcct
     7261 ttgatatagc aaaaagcgaa ttagacgctt ttatagcaag tctttcaaat ttaaaaagtt
     7321 ctaaaaaaga attaagtctt gatgaagctt ttactatttt agaacttcca aataatgcag
     7381 atttaaatgc ggtaaaaaaa caataccgca atttagcaaa aaaatatcat cctgatattt
     7441 taaatgcaaa caatgttagt gaagaaaagc ttaaaatcgg tgtagagaaa tttcaaaaaa
     7501 tcaacgaagc ttacgaaaaa gttaaaaaac atttagaaag gtaaaaatga gagcattact
     7561 tagtgtgagt gataaagaag gcatagtaga atttggcaaa gagcttgaaa atttagactt
     7621 tgagattctt tcaacaggcg ggacttttaa gcttttaaaa gaaaatggaa taaaagttat
     7681 agaagtgagt gattttacaa agagtcctga gctttttgaa gggcgtgtga agactttgca
     7741 tcctaagatt cacggtggga ttttgcataa aagaagcgat gaaaatcata tcaaacaagc
     7801 aaaagaaaat gaaattttag gcattgatct agtttgtgta aatttatatc cttttaaaaa
     7861 aaccactatc atgagtgatg attttgatga aattatagaa aatatcgaca taggtgggcc
     7921 tgcgatgata agaagtgcag caaagaacta taaagatgtg atggtgcttt gcgatccgct
     7981 tgattatgaa aaagtgattg agactttaaa aaaaggtcaa aatgatgaga attttcgttt
     8041 aaatttgatg ataaaagctt atgagcatac ggcaaattat gatgcttata ttgcaaatta
     8101 tatgaatgaa cgctttaacg gaggttttgg agcgagtaaa tttatagtag ggcaaaaagt
     8161 atttgataca aaatatggag aaaatccaca tcaaaaaggg gctttatatg agtttgatgc
     8221 cttttttagt gcaaatttta aagctcttaa aggcgaagca agttttaata atctaaccga
     8281 tattaatgca gctttaaact tagctagtag ctttgataaa gctccagcta ttgctatagt
     8341 aaaacatgga aatccttgcg gttttgctat aaaagaaaat ttagtacaaa gctatataca
     8401 tgctttaaaa tgcgatagtg ttagtgctta tggaggagtg gttgcaatca atgggactct
     8461 tgatgaggct ttagcaaata aaatcaatga aatttatgta gaagtaatca tcgcagccaa
     8521 tgtagatgaa aaagctttag ccgtgtttga aggtaaaaaa cgcattaaaa ttttcactca
     8581 agaaagcccg tttttaatcc gcggttttga taaatatgat tttaaacata ttgatggggg
     8641 ttttgtatat caaaacagtg atgaagtggg cgaagatgag cttaaaaatg caaagcttat
     8701 gagtcaaaga gaggcaagca aggaagaatt aaaagatctt gaaatcgcta tgaaaatagc
     8761 agcgtttacc aaatcaaaca atgttgttta tgtaaaaaat ggcgctatgg tggctatagg
     8821 tatgggtatg acaagtagaa tcgatgcagc aaaggcagca atcgctaaag ctaaagaaat
     8881 gggacttgat ttgcaaggtt gcgttttagc aagtgaagcc ttttttcctt ttagagatag
     8941 catagatgaa gcaagtaaag taggggttaa agctatagta gaaccaggcg gaagtataag
     9001 agatgatgaa gtggtaaagg cggctgatga gtatggtatg gcgctttatt ttacaggagt
     9061 aagacatttc ttacattaag tttaatggaa tgttatgttt tttacacata attcaataaa
     9121 aattaaataa attatgtgta aaatatttcc gaaaaatttt atttttagga aactatgatg
     9181 tttaaaacta taggatttaa ggtttctgct gcaatttttg tggtgttgct tataagtttc
     9241 attgtaatgc aagtgatttt aaatttggat tttaaaaata ctgccaataa aatgagcagg
     9301 gcaaatttaa ataccgtaag tacttctgtt tttcaaacaa tgagaatggc tatgaattta
     9361 ggagatcctg aaaaaattaa agaagccatt gaagatgtaa aaagtataga gggtattagt
     9421 gatattaaaa tttatccttc aaaagatact atagatcttt ttgagatgaa agcccctcaa
     9481 atttcaaatg ataagcgtat tatagaacaa ttttcaaatc ctaaaattca agctttagaa
     9541 gaaaatataa atggtgttgt gtatttaaga ttgatacgcc ctttgattgc agatgaaagt
     9601 tgtgttactt gtcatgaaat gctaatgcag gaagtgtgat tggggttatg gatatatcac
     9661 attctttaga aggtgtttaa aaagatataa gcaaaaccgg tcaatcttat attataatat
     9721 ttactattgc tttgattttt accctttgtg gtggttcttt taatgcttaa agttgttgtt
     9781 ggaaagcccg ttttagagct tttaaatcat gctaaagaat tagctcaagg aagcggcaat
     9841 tttaaaagct cgtatttcag ttaaaggtca agatgaaatt gctttagctt gtggatatat
     9901 caatcaattt atcgaaaaaa ctcacaaggc agttagcagt gcaagtcata atttaaaaaa
     9961 tgtagaaaaa caaagcaatc ttttaaattc aaatgctatt ttttaagtga tatcagttca
    10021 caaagtcata agcaaataga tcaaagtttt aaacttggtg caaatgttgg taatgaactt
    10081 agagaacttg ctagtttgtc aaataaggca aatagtgcca atgaaaaatc ctttttatta
    10141 ttagagcaaa tgcttaaatc tttgtttaat gttgctaata aagtatcaat agtatcccaa
    10201 aatgaaaatg aattggctaa aaaagttgaa aacatggtca atcaagcagg tagtatacaa
    10261 aaagcaactc gaatgatgga taagatcgca gataaaacaa aattaccatc cctaaatgct
    10321 ggcatagaag tagctagggc tggtgcattt ggactaggtt tttctgtaat tgctgaggat
    10381 gataggcagt tggctcagaa cagtgaagaa tttttgggaa atgtagctca aattacaaaa
    10441 gagcttttgc aaagtattaa tgaggttaac gcagaattaa agaaaaatac tcaaagtata
    10501 caagctttaa atgatgacac cgctttattg gttgatgatg ctaatgaggt taaattatgt
    10561 aacgaagatg ctagggcttt ggtaactcaa tgtactgaaa aaataaaaat ttcccaagag
    10621 aatatataaa atttactttc tcgtatgcaa gaaaatgttg aagtaagtga aaagaatgaa
    10681 gaaatttcta aaattctact tcaagttgca gatgagttaa aaatagtgtg tcataatctc
    10741 gaaagcgaac ttaaccaatt ttaaatttaa aggaataaaa tgaaaaaaac gcttcaaatt
    10801 gctttagctg caactttttt tgcaggttgt gctagtactt ctgttacttc atctacttct
    10861 aaaggtaata atgaacttgt acaagatcag cttttcaaaa tagaaaaaat tatagttaat
    10921 ggtaaaactt ttgatccaaa aaacgcagag gaaagtccaa atattagttt tgaaaataat
    10981 aaattttatg gttattcagg gtgtaatcgt ttttttggtt cttaccaaac taaggcggat
    11041 actttgcaaa tcgaaggtga tcgcgtagct tcaactcaaa tgctttgtca tccaatggat
    11101 gtaatggatt ttgaaaattc tttcctttca aatttcaaag gaatttttaa aatttcaaat
    11161 gaaaatggaa aacttgtttt aagtaatgat gaaatgaaga tcttttttaa ataataccct
    11221 aaagcctcga aatatcgagg taatcttctt aaatttgaca aaagtctaaa aaatgataca
    11281 attataattt tattatcaaa aaaggtagtt aaatgataaa atcaattcct gaatggagtg
    11341 agcaagaata cctcatgctt tctttacccc atgaaaaaag cgattggaat ccctacttag
    11401 aggaaatttt gcaaagttat aaagaatttg taaaagtggt aagtgaattt caaaaagttt
    11461 tacttatagc tcctaaacag agtgattttg aaaattttaa agatataaaa aatgtagagt
    11521 attttaaatg tgataccaat gatacttgga tacgcgattt tggagctata gatatagtag
    11581 aaaatggtcg tttaaaagct cttgatttta cttttaacgc ttggggaaat aaatttcaaa
    11641 gtgagcttga taatgctgta aattctaagc tttttaaaga aaaatttaaa gaggagctta
    11701 aaaaggttga ttttatttta gaaggaggaa gtattgactt taatggagag ggtgtgatgc
    11761 ttacaagctc tcattgtctt ttaaatgaaa atagaaattc tcatctaaac aaaacccaaa
    11821 ttgatataaa attaaaagaa atttttggtt taaaacaaat tatttggcta gaaaatggtt
    11881 tcataaaagg tgatgatacg gatcatcata tcgatacctt agcaagattt atagataaaa
    11941 ataccatagc acattgtatt tgtgaagatg aagaggatga gcattatttg cctttgcaaa
    12001 aaatgaaaga agagcttaaa aaaacaggct ttgatttagt agaacttcct atacctaagc
    12061 ctttatacta tgaaggaaga agattgggcg caacttatgc gaattttgtt tttataaata
    12121 atgctttaat tgtgcctttt tataaggata aaaatgatga aatcatagct aaaagacttt
    12181 ctaaagcttt acctagtcat aaaattatag gagtagatgc aagagtgttt ttacgacaaa
    12241 acggttcttt gcattgttct tgtcaaaatc gtttcaaagg tttaagatga gtttgcaaaa
    12301 aaaagcaact cttgtagcaa gtttatgtgc cattgtttta gccttggtta aatttatagt
    12361 aggcttaaca agtggttctg ttgcagtact ttcaagtgcg attgattctt taatggattt
    12421 tgctatttct gcttttaatt ttttggctct taaaaaaagc tcacaaaagg cgaatgaaaa
    12481 ttataatttt ggtttttcta aaattgaagc tttaatgggt ttgttagaag gtgtttttat
    12541 agttggcgtg gggattttta ttttttatga gagtatttta aagatttatt ataaagaaga
    12601 aattaaagat ttaaattcaa gcatctatgt gatgattttt gctttaatta tgactttttt
    12661 tcttgtactt tttttaaatt atgtagctaa aaaaaccaaa agtttgatta tagaaagtga
    12721 tgctttgcat tacaaaacag attgcttaac caatgcttgt actttagggg ctttggtttt
    12781 gatttatttt acaaatttac atattattga tgctattttt gggatagtga tcagtcttta
    12841 tacggcattt tctgctttta aaatcattaa aaaagcttta gcttttttaa tggatgaggc
    12901 tttacctaag gaacaagtgg ataaaatttg tactttgatt tctaataatc ctgaaataat
    12961 ttcctatcat gaattaaaga cgcgtaaaac tccaagttgt aattatttaa gcgtgcattt
    13021 ggttttttgc cctataattt cgcttttaaa tgcgcataaa atttcagatg aaatagaaga
    13081 aggtgtgcgt aagatgtttg aaaatgaaaa atgggatata caaattcatt tagatcctta
    13141 tgatgatgca gaacaagaaa ggcaaagaca atgaaaatcg ctttaataca acaaaaattt
    13201 catttaaata aagaacaaac tataaaaaaa acttgcgaat ttatagaaga agcctctaaa
    13261 caaggagctg agcttgtttg cttaggagaa cttcatcaaa gtgagtattt ttgtcaaagt
    13321 gaaaatgtgg atttttttga ctatgctaat gattatgaaa aagatgtgaa attttgggca
    13381 aatatagcta gaaaaaatca aatagtgctt attgcttcat tgtttgaaaa acgaagtgcc
    13441 ggactttatc ataatactgc agtggttttt gaaaaagatg gttctatagc aggcaaatat
    13501 cgcaaaatgc acatacccga tgatccttgt ttttatgaaa aattttattt tactcctgga
    13561 gatttgggtt ttgaacctat aaatacaagt ttaggtaagc ttggagtgct tatttgttgg
    13621 gatcagtggt atcctgaagc agcaagaatt atggctttaa aaggagctga gattcttatt
    13681 tatcccacgg caattggttg gtttaataag gataaagatg aagaaaaaca aagacagctc
    13741 aatgcttggc ttggcgtaca aaaaggacat gctatagcta atggtttata tgtagtagct
    13801 atcaataggg taggttttga aaaagatgta agcggggtag aagagggcat tagattttgg
    13861 ggaaattctt ttgtttttgg ccctcaaggt gaagaacttt gtcttttaga ttctcaaaac
    13921 gaatgtgtaa aaatcataga aatagataaa aaaagaagtg aaaatgtgcg tcgttggtgg
    13981 ccttttttgc gagatagacg catagaatat tttgcagatt taactaaaag atttattgat
    14041 taaatcaata aatcttattt gttttgtata ttttcaagat agctttttat ttgctctttt
    14101 tcttgttcgt ttaaatttat aaaacttatt tctttaagtc ttgataaaag caaattatct
    14161 tctaaaattt cattttttcc tatttctaaa gaagtgatga cgctagaact tatgagaagt
    14221 ctttgggttg catcttttct taagccccat atattatgta tggcaatatt attatctgta
    14281 atttgtcctg cataaagcat aatatgtcca ggtaaataaa gtaaactaag ataagctttc
    14341 ccaaagcggt ttaaaaaatc ttttttttga gaattgctaa gagtgcttat atcaaaatga
    14401 ttaaaagaat ttttttgtgc agctgaattt cttggtagat aaagtccaaa agctgaaaag
    14461 atatcacgag ttagtaaaga acaatctctt tcaaaattat aaccgcccca gccataaggc
    14521 aaatttaaaa cttgtgaaag ttgatttttt aaatttttat cattgaattg taaaggaaat
    14581 ttagatacat cttttttaga aattttatat tttttagaac ctatttttcc ataaaaatag
    14641 tttttatctt ctttgtagta aggatagata gcaccaattc tactttcaaa gaaaaattta
    14701 ccatcctcgc tatagatagc aaatttttct tttagtggtg tgataaagtt gagattttca
    14761 tagattttcg ctctatcgtt tgagaaaaat tccaaatttt tactttcaac aaatccaaat
    14821 ccagcttcac ctaaaacaaa agcataacgc ttatctttac taaaatgtga aattaagaca
    14881 ggggctccag tatttaaaat gccatcgctt gcatagtcaa aaggaattcc ttcattttca
    14941 aaaaaaggat tttttaagat agctctttgg gttggaagat ttttaatgat tgtattttgg
    15001 ataatcaaag ctttttgatt aagtttgcca aattcttgga tatttgcgtt atttatagca
    15061 tttttaaacc atgaaagcgg aataatttgt ttattgaaaa aataataagt attttttgaa
    15121 tttaaatata aaggaaagga ccaaaaaata ttttgtcctt tgtagttttt aaatgaatca
    15181 tgccaagggt taaagaaata ttttttatat cgttttgcat caaaattaat attgtaagta
    15241 aattgtggta aaatgcttac attttgttcg tattcaagtt ttgcataatg ttgattttca
    15301 tttttttgtt ctaaattttc atgatgaagc gaagttaaat tttttgttga acaagctgtt
    15361 aaaaatagca ctataaaagt aaaatataaa caagatttca taatcaacct tttagaaaaa
    15421 atagttataa ttaaagctaa ggaaatataa tgcttgataa actagaaaaa attttagctt
    15481 atgataatgt ttttttaagt ggtggcgctg gagttggtaa aagctttttg acaaatgagc
    15541 ttatcaaatc ttatagaaaa caaaaaaaat tagccatagc tcttggttct agtgctctat
    15601 cggcgtttaa tataggcggt gttactttac acagcttttt ttgtttaggg tattgtgatg
    15661 atatgatgaa attaagcgca ttggatcgca atcaaaaaca aaaagaaaaa ttaacaaaac
    15721 ttaaagagct tttaaaaacg attgagctta ttattatcga tgaaatttcc atggttagcg
    15781 caaatgtttt tgaaatgata ggctttagac ttaaaaattc tcaatttaat ggaaaaattt
    15841 tagttgttgg agattttttt caactgcctc cagtaattaa agaaaaaaaa gaaactttat
    15901 ttaaccattc ttattatgct ttttcttcat ttttttggca agatttaaat tttaagaata
    15961 ttaaactttc tcaacctaaa agaacgcaaa atatggaatt ttataaccat ttatctttga
    16021 ttagacaagg ttttttagat gaaaaaattt taagcttttt tgaatctttg cgaattgatt
    16081 ataaagaatt agaaaattta gaagatgatt atactttact ttgtggtatc aataaaaaag
    16141 taaacaatat caatcaagaa aaattaagca aacttgagac cccgcttgta tgctttaagg
    16201 ctcaggttaa aaaagaagat aagagaataa aagatgaaga gcttgattct tggattagaa
    16261 gcttaaatat attggaagaa ttaaatatta aaataggcgc tcgtattatt ttttgcgtaa
    16321 ataattggga taagaattat tataatggag agcaaggtat tatagaagat attctttatg
    16381 aagaggagaa aatttatatt agcattatta aaaataatgg gatgaaaatt ttacttgaac
    16441 cttatacttt tttcatggaa gaacttgagc aatcaggtaa agattttgtt gttaatattc
    16501 tcgcaagtgt tacacaattt cctattaaat tagcttatgc tattactata cacaaatcac
    16561 aaggtatgag tattgaaaaa ttagtgtgtg atattgatca tatttttgaa aatggacagc
    16621 tttatgtcgc tctttctcgc gctacaaacc caaatacttt aaaaatttat tctacaaaaa
    16681 agataaattt tggattttat tttgctaata ttttaaaaat agattctaat gtgattgaat
    16741 tttataaaaa acataatttt ttagatctcg aaatacaaga acaaatcatt taaaggcatt
    16801 aaatgaaaaa aatattttta agtgtttttt tggttttgag tttaaatgct caaaatcttg
    16861 aaatagataa aataagaaca gatttgtatt ctaaaagtgg gacaaatgtt cttaaaaaag
    16921 tcgaaatttc tttggaattt gatgggaata atttaaaaga aaatgaaaat aagtta
//
LOCUS       DARGEY010000023        16941 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.023, whole genome shotgun sequence.
ACCESSION   DARGEY010000023 DARGEY010000000
VERSION     DARGEY010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16941
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.023"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            38..556
                     /locus_tag="SF008_000674"
     CDS             38..556
                     /locus_tag="SF008_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004276398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232961.1"
                     /translation="MENFIKGERFIRKYKFYISAVVIILVAWFAGNFIISKINDYKTK
                     EANEIYANLIQDPSNKNLLEQLKNKNTNLYTIFLLKENINDLNNTAFQNELKQIYNNA
                     QTNTLLKNIIALSLGDKSIFLKNYDKLLEAYKLLEQNKIEEANVLLSQIKENSSLNQI
                     AKNLKHYQGITQ"
     gene            553..1551
                     /locus_tag="SF008_000675"
     CDS             553..1551
                     /locus_tag="SF008_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232962.1"
                     /translation="MKKIFLTLFCLIFLCACGTKRQYFEPKQTDGDLSHNSNLKSKIV
                     DWNLVSAKLSNNTAILKNNISIDKFKLPKNYMLLAYQDGEYFTADNNGNLKIFDNSYN
                     EIYNFQFDASVVGVASNGDDLALVLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANP
                     IFLDNIIVYPTLDGKILILSRNNLQVIKDVVISAENFFNNVIHLSVIGDKLIAATAKK
                     IIIVSPARTLYLDADIKDVALSDDGIFILEKDGTIIKTDYNLRKIAEKKFEFAIFVKS
                     NIYNNYLYIFEKTGYLIKMNLNLDNTQVFKLSEAIDKISFMGNGKFYYGDKILDLL"
     gene            1548..1838
                     /locus_tag="SF008_000676"
     CDS             1548..1838
                     /locus_tag="SF008_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tram-like protein"
                     /protein_id="HEG8232963.1"
                     /translation="MIKILEQTIKSLKLNLKPYDLSMLTRKKSYICAKDQNNILFMYT
                     GKTKFLMKDALFLENLAQQININNKYFFSMASLCSKAKNHLEMKGFNIYVAL"
     gene            1825..2454
                     /locus_tag="SF008_000677"
     CDS             1825..2454
                     /locus_tag="SF008_000677"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEG8232964.1"
                     /translation="MLLCDIGNSNANFLDDNKYFTLSIDQFLEFKNEQKIFYINVNEH
                     LKEHLKNQKNFINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDIISNS
                     IHLGGFILPGIANYKKIYSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGIYLLI
                     KDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNLLY"
     gene            2572..3918
                     /locus_tag="SF008_000678"
     CDS             2572..3918
                     /locus_tag="SF008_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEG8232965.1"
                     /translation="MGQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKMAL
                     AVGDIECDYMKKRYEEFKELYPYIKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVGFNQEIIHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFIDKSLFVKDAKKIVPSLKASDIYYAKGFGGVRPQVIDKTKGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLICNYLGMEFNEDKFSSELL"
     gene            3967..5409
                     /gene="pyk"
                     /locus_tag="SF008_000679"
     CDS             3967..5409
                     /gene="pyk"
                     /locus_tag="SF008_000679"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEG8232966.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRKVAKELHTRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIRAKVVSIDDQKIETIIENDGFLNSNKG
                     INFPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNIQKEIIQKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAVGIDPANAVDIMCQTI
                     IETEKRYPYNKFNDFNDLDNTDKIMRSSAHLATDLNADAIFSLTSSGKSAIKIARYRP
                     NIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSVRSSVEKGFMDEDKCY
                     LLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
     gene            5507..6142
                     /locus_tag="SF008_000680"
     CDS             5507..6142
                     /locus_tag="SF008_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232967.1"
                     /translation="MQVNTFSNIASMAQTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIDSSNAQTGLDSLLNGANLDTAKSILT
                     NIDFASLGYSGKNPLDMNTDELQQLVSEDGFFGVENTVNRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQDTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(6173..8635)
                     /gene="pflB"
                     /locus_tag="SF008_000681"
     CDS             complement(6173..8635)
                     /gene="pflB"
                     /locus_tag="SF008_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HEG8232968.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSDSGFKFTRESAPEDVSTFEEVESQEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVVMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDV
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLVRLQNSYDNDKDRYKILDTYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDST
                     DAGIYLNISKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDITKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPNIAREFYVN
                     LMHIAGLLNLERQKFKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAVGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(8645..9880)
                     /gene="serS"
                     /locus_tag="SF008_000682"
     CDS             complement(8645..9880)
                     /gene="serS"
                     /locus_tag="SF008_000682"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEG8232969.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKTA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSAKVNALENELEEIAHAIPN
                     IPDECVPVGEDEDENVELKKVLNPPSFDFTPKEHFELGESLNWLDFVRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDALKKYF"
     gene            complement(9891..10850)
                     /gene="trpS"
                     /locus_tag="SF008_000683"
     CDS             complement(9891..10850)
                     /gene="trpS"
                     /locus_tag="SF008_000683"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEG8232970.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTQIVPVGKDQIQHVEIARDIALKV
                     NNEWGEIFTLPKAKVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKMYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            complement(10847..11344)
                     /locus_tag="SF008_000684"
     CDS             complement(10847..11344)
                     /locus_tag="SF008_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEG8232971.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKVSEIFEQKGENFFREQEQKMADFFSSCEKACIATGGGFVNVSNLEKAGFCIYLKAD
                     FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEI
                     KKVIK"
     gene            complement(11331..12713)
                     /gene="der"
                     /locus_tag="SF008_000685"
     CDS             complement(11331..12713)
                     /gene="der"
                     /locus_tag="SF008_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEG8232972.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVINKVDNKKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEHYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRAHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            12815..13747
                     /locus_tag="SF008_000686"
     CDS             12815..13747
                     /locus_tag="SF008_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEG8232973.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGIFFIAYLLKRSKAHKEGGYFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFVVFKENIGIKGWIGILIAFDGVLLIAQPWAHNLNHSGFDLKNSVIGI
                     TSGFLAALALTSVRELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLD
                     FILAPFVMPSLTAWLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIV
                     GIILGDNLPSTMVFLGIIGIIFGGLILVKNKGKK"
     gene            13744..14559
                     /gene="kdsA"
                     /locus_tag="SF008_000687"
     CDS             13744..14559
                     /gene="kdsA"
                     /locus_tag="SF008_000687"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HEG8232974.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKVNIKKGQFLNPSDIKYSVKKVLQTRGIEDEGYEAAQKNGVF
                     VAERGASFGYGNLVVDMRSLVIMCEFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPCEALCDGSNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            14556..15020
                     /locus_tag="SF008_000688"
     CDS             14556..15020
                     /locus_tag="SF008_000688"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEG8232975.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            15020..15418
                     /gene="nusB"
                     /locus_tag="SF008_000689"
     CDS             15020..15418
                     /gene="nusB"
                     /locus_tag="SF008_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEG8232976.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNF
                     TLNLYNGILDNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVIN
                     EAIELAKELANDNSPKFINGVLDALIKAKK"
     gene            15415..16254
                     /gene="pyrF"
                     /locus_tag="SF008_000690"
     CDS             15415..16254
                     /gene="pyrF"
                     /locus_tag="SF008_000690"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEG8232977.1"
                     /translation="MKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFI
                     EELKKVDDFKIFLDLKIHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLS
                     KFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKK
                     IKEHTSSNFLTLTPGIRPFGETSDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAV
                     CEKILNKIHRKNISENDIEQNYEVIQQKEWDMCNHFEEWIKTQPDKEHALKEFYAKCG
                     IKY"
     gene            16251..>16941
                     /locus_tag="SF008_000691"
     CDS             16251..>16941
                     /locus_tag="SF008_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232978.1"
                     /translation="MNYQQLECDYFNLYNQFLSVDFQISLFEKDHKGLIKDFIFFYYQ
                     ILKQKDLSYLLEVRNKISLKVYNYMQEHSTSPKDLSLICLRENKHIKFFQIFYKALAY
                     FVAFRKKLDGEQKIKNLISNINDCFGYHFLNSDFNNLQNFQKSDLFTLPEKHLKYFHF
                     AMIHLCFMVLNPLNFKDSNRHLDKAINYLVDGTFEIYELIFKEYFLLFSKDKELKDEF
                     RKLKKLEFKILM"
BASE COUNT         6053 a         2664 c         2478 g         5746 t
ORIGIN      
        1 agctgttaaa aatgaactta acacagaaga acaatttata gaaaatttta tcaaaggaga
       61 gagatttata cgcaagtata aattttatat atctgctgtt gtgataattt tagttgcttg
      121 gtttgctgga aattttataa tctcaaaaat aaacgattat aaaacaaaag aagcaaatga
      181 aatttatgcc aatctaatac aagatcctag caataaaaat cttttagaac aacttaaaaa
      241 taaaaatact aatctttaca ctatcttttt actaaaagaa aatattaatg atcttaataa
      301 tacagccttt caaaatgaac taaaacaaat ttataataat gctcaaacaa acactttact
      361 taaaaatatt attgcattat ctttaggaga taaatcaata tttttaaaaa attatgataa
      421 attattagaa gcttacaaac ttttagagca aaataaaatc gaagaagcta atgttttact
      481 ttctcagata aaagaaaatt caagtttaaa tcaaatagct aaaaatctca aacattatca
      541 aggcattaca caatgaaaaa aatattttta acactatttt gtttaatatt tctatgtgct
      601 tgtggcacca aaagacaata ttttgaacca aaacaaaccg atggagattt aagtcataat
      661 agcaatttaa aaagtaaaat cgttgattgg aatctagttt ctgcaaaact tagcaataat
      721 acagctatct taaaaaataa tatttccata gacaagttta aacttcctaa aaattatatg
      781 cttctagctt atcaagatgg ggaatatttt actgcagata ataatggaaa tttaaaaatt
      841 tttgacaatt cttataatga aatttataat tttcaatttg acgctagtgt tgtaggagta
      901 gcttctaatg gagatgattt agcccttgta cttgcaaata atactatagt tcttgcaaat
      961 cgttctttgg gtattaaatt tagtcaaacc ctaacctcag ctccagctca agacagtcgt
     1021 accgctaatc ctatattttt agacaatatc atcgtatatc caacgctaga tggcaaaatt
     1081 ttaattcttt caagaaacaa tcttcaagtc attaaagacg tggttatttc ggcagaaaat
     1141 tttttcaaca atgtaatcca tctaagcgta atcggagata aacttatagc agcaacagct
     1201 aaaaaaatca ttattgtaag ccccgctaga actctttatc ttgatgctga cataaaagat
     1261 gttgcactta gcgatgatgg tatttttata ctagaaaaag atggcactat tattaaaact
     1321 gattataact taagaaaaat tgcggaaaaa aaatttgaat ttgctatttt tgtaaaaagt
     1381 aatatataca ataattattt atatattttt gaaaaaacag gctatcttat caaaatgaat
     1441 ctaaatttag ataatacaca agtatttaaa ctttcagaag ctattgataa aatttctttc
     1501 atggggaatg gtaaatttta ctacggagat aaaattttag atttgttatg ataaaaattt
     1561 tagaacaaac aataaagtct ttaaaattaa atttaaagcc ctatgactta agtatgttga
     1621 ctagaaaaaa aagttatatt tgtgctaaag atcaaaataa cattcttttt atgtatacag
     1681 gaaaaacaaa atttttaatg aaagatgcct tatttttaga aaatctagca cagcaaatta
     1741 acataaataa caaatatttt tttagcatgg cttctctttg ctctaaagca aaaaatcatc
     1801 tagaaatgaa aggatttaat atctatgttg ctctgtgata ttgggaattc aaatgctaat
     1861 ttcctagatg ataacaaata ttttactctt agtatagatc agtttttaga atttaaaaat
     1921 gaacaaaaaa ttttttatat caatgtcaat gaacatctca aagaacattt aaaaaatcaa
     1981 aaaaatttta tcaatcttga accttatttt ttatttgata caatttatca aggattagga
     2041 atcgatcgca tagcagcttg ttatactatt gaagatgggg ttgttgtaga tgcaggtagt
     2101 gctattacaa ttgatattat ttctaattct atacatcttg gtggttttat cttaccaggt
     2161 attgcaaatt ataaaaaaat ttatagccat atttcaccac gattaaaaag tgaatttaac
     2221 actcaagtta gtcttgatgc attcccgcaa aaaactatgg atgctttaag ttatggtgtt
     2281 tttaaaggaa tttacctact gataaaagat gccgctcaaa ataaaaagct ttatttcact
     2341 ggtggagatg gacaattttt agcaaattat ttcgatcacg caatttatga taaactttta
     2401 atctttcgag gaatgaaaaa gattataaaa gaaaatccca atttacttta ttaaaaatgt
     2461 tacaaaaatt ctcattgata tcaaacctta atgaaattta actttttgta aaacaaattc
     2521 aattaaactt tatttagaaa aaagtttatt aaaataaaaa aaggaaaaac aatgggtcaa
     2581 caagaatttg atgtgcttgt catcggagct ggaatttcgg gagcagcatt attttacgag
     2641 cttgcaagat atacaaatat taaaaatatt gctttgatag aaaaatataa tacagctgca
     2701 acattaaatt ctaagggaac gagtaattct caaaccattc attgtggaga tattgaaacc
     2761 aattatactt tagaaaaagc gcgaaaagta aaaagaacag ctgatatgat agttaaatat
     2821 ggactcatgc aaaatgcgca aaataatttc atgttttctc atcaaaaaat ggctctagct
     2881 gttggagata tagaatgtga ttatatgaaa aaacgctatg aagaatttaa agaactttat
     2941 ccttatataa aatttttcga taaagcaaaa atcaaacaaa ttgaacccaa ggttgtttta
     3001 ggagaagatt gcaatcaaga tagacctgaa aatatctgtg ccatgggtgt tgaaagcggc
     3061 gaggttttta caactgtaga ttttgggaaa atgagtataa atctaataga acaagcccaa
     3121 aaacaaaata aaaatacttt cgttggcttt aatcaagaaa ttattcacat agaaaaaaaa
     3181 gatgatattt ttatattaaa aacctcaaat catcaagaat accatgccaa aagcgtagtt
     3241 gtcaatgctg gggcgcactc tttatattta gcacataaaa tgaacttagg tatggataag
     3301 tcttgttggc ctgttgcagg aagtttttat ttaaccaaac aaaaactttt aaatggcaaa
     3361 gtttatatgg tgcaaaatcc taaacttcca tttgcagccc ttcatggaga tcctgatttg
     3421 cttgctgata tgaacactcg ctttggacct actgcacttg ttattccaaa actagaacgt
     3481 tatcatggtc taaaatcagt tccagaattt tttgaagcac taaaacttga taaaactgtt
     3541 ttaaaagtaa cttttaatat gtttaaagat gcaacaatta gaaattacat cttttataat
     3601 tatctttttg aactaccttt tattgataaa agcttatttg ttaaagatgc caaaaaaata
     3661 gtcccaagtc ttaaagcaag cgatatttat tatgcgaaag gttttggagg cgtaagacca
     3721 caagttattg ataaaactaa aggagaatta atgctaggtg aagcaagcat cacagaaacc
     3781 cctggtatta ttttcaatat gactccaagt cctggggcaa caagttgttt aggaaatgct
     3841 gaaagagatg caaagcttat atgtaattac ctaggaatgg aatttaacga agataaattt
     3901 tcttcagaat tattgtaatc attttgtttc tatttttagc tacaataatt tcaaaaggag
     3961 tttaccatgc ttaaaaaaac aaaaattgta gccacagtag gtccagcaag tgaaaaggaa
     4021 gaaattctac gccaaatgat tatcaatggt gtaaatgttt tccgtttaaa cttttctcat
     4081 ggaacacatg agtatcataa aaaaaactta gataccataa gaaaagtagc taaagaattg
     4141 catactcgta ttggaatttt acaagacatt agcggtccta aaattcgtac aggtgaactt
     4201 aaagaaccat ttgaattaaa aaagggtgat agacttgatt tttatcgtga aacaatttta
     4261 ggggagaaga ttgctcaaaa tcattacaaa atcagtatta atcaaaaatc cattttagat
     4321 atgttaaaaa ttgatgaata tatttatcta tatgatggat caattcgtgc taaagtagta
     4381 agcatagatg atcaaaaaat tgaaaccatt atagaaaatg atggtttttt aaactcaaat
     4441 aaaggtatta attttccgaa tactaaaatc aatattgatg ttattacaca aaaagataaa
     4501 aatgatttac tttggggtat aaaaaatgaa gtagattttt tagcaatatc tttcgtacaa
     4561 aatgcgcacg atattgatga agttcgtgaa attttagcac aaaataacgc aaaaatatct
     4621 atttttgcaa aaattgaaaa atttgatgca gtagaaaata ttgatgagat tattaaatct
     4681 agcgatggta taatggttgc aagaggagac ttaggtattg aggtacctta ttataaagtt
     4741 cctaatatcc aaaaagaaat tatacaaaaa gcaaacaatg cctctaagcc tgttattact
     4801 gcgactcaga tgcttttttc attagccaaa agcaaaaccg ccacaagagc tgaaatttca
     4861 gatgttgcaa atgctgtttt agatggaaca gatgcagtaa tgctaagtga agaaagcgcc
     4921 gttggtatag atcctgcaaa cgctgttgat ataatgtgcc aaactataat agaaacagaa
     4981 aaacgctatc catataacaa atttaatgat tttaatgatt tagacaatac agataaaatc
     5041 atgcgttctt cagctcatct tgcaacagat cttaacgctg atgctatttt ttctttaaca
     5101 agtagcggaa aatctgctat taagattgca agatatcgtc caaatataga aatcatagca
     5161 gtagggcatt ctgaaaaaac cttaaactct ttaagtatag tttggggagt taatcctgca
     5221 atcttggtta acaaaagtaa tgaacttaca gaattattaa aagactctgt aagatcaagt
     5281 gttgaaaaag gttttatgga tgaagacaaa tgctatcttc taactgcagg ctttccaaca
     5341 ggagtagaag gtactagcaa tcttatccgc attctcaata aagagcaaat tgcttattat
     5401 ctacaataaa acattaaatt cctttgaaaa taaggaattt aatgtcctta taaatttttt
     5461 aagccaaaag tcgatataaa ttaaagcctc acacaaagga gcaaatatgc aagtgaatac
     5521 tttttcaaat atcgctagca tggcacaaac acaagttagc aataagaagg cagatgatgc
     5581 taaggaaaac acaaaagaca aaaatgttca aagtgctaat tctagcaagg atgtagataa
     5641 aaataccctt gaaaaattaa atgcacttgg tggaaaaggc attacacaaa tttacctagt
     5701 tcagtttcaa cagcaaacaa tgaatgctgt aatagattcg agcaatgccc aaactggact
     5761 agatagtctt ttaaatggtg ccaatttaga tactgcgaaa tctatactta caaatattga
     5821 ttttgcatcc ttaggctaca gtggcaaaaa tccacttgat atgaatacag atgaacttca
     5881 acaacttgta agtgaagatg gtttttttgg agtggaaaat acagtcaatc gcatcgcgga
     5941 ttttgttatt aaaggcggtg gcgatgatgt tgaaaaatta aaaaaaggtc ttgaaggtat
     6001 gaaaaaagga tttgagcaag cagaaaaaat gtggggtgga gaacttcctc aaatcagtca
     6061 agatacaata gatgcggcac ttaaaaaagt tagcgatcgc atcgatgaac taggcggaaa
     6121 aactctagat cttcaagctt aactaaaaat gcttagaaat ttctaagcat ttttagttgt
     6181 tattaatatc aaaagtaaaa aattcactct taaaattatt aggtaaagtt ttatactgag
     6241 atatcgcagc ttcatagttc tttacttctt gatacaacat accaagagct gctttactct
     6301 ctttgttatt tttatctgta agtttagaaa gctgcaaaag cgctatagct gaatttggat
     6361 tatttgcacc tacggctgct acggctgcta aaaataaagt tttagtatct ttagctccat
     6421 aatcatcaat caaagaatta taaagcgcat aagcctcctc gtattgctgt gcaaaaatat
     6481 ccaaataagc taaagtttgt aaaataccct catcttttgc tcctgaaaca ttaatcaact
     6541 ctttaaattt ctgtctttct aaatttaaaa gccctgcaat atgcattaaa ttaacataaa
     6601 attccctagc tatatttggc ccaccaaaaa cactacgata atcaagtttt aaatttttaa
     6661 aatgaatttg agcattttga gcatattctt taatatttaa atttgaattt aaagaattaa
     6721 aatacaaaat atttgccaaa atatcttcag gcaactctga acgcaattta gcaattttca
     6781 catctacttg attattaagg ttattatttt tagcaacaat agcttcaaaa atcaaactca
     6841 aaggcgtatc tttttttgtt tcatctaaat aaggaagcat agaaatataa ttattattaa
     6901 ctaaaaataa catacttttt tgcatattag ctttaaaatt agaatcagca gctatattat
     6961 caagaatttc attgtaaagt ttagttatat caatatcaat taattttgca caaaacatag
     7021 caaaagcacc tgctaagtaa tttttaggat taagatgata tgaacttgaa aaatgcttat
     7081 aagcaagttc ataattttgc atttgggcat aagttaaagc caaattataa tgtaaaatac
     7141 tatgttctgg ataatccttg ataagttttt gaaattcttg gttagcaagg cgtaacttct
     7201 gatttaatgc atagttaata atattggcaa tttttacatt ggtagatgaa agagctttgc
     7261 ttatattaag ataaattccc gcatcagtac tatcatctac gaaatctgta acattagctt
     7321 ttttaatata taaagcagcc tgcttactat caaaaacctg ataaggtgca aaataaaaaa
     7381 gcaaatcgaa ttgatctttt tgttttttta acaaatcttt tgaaaaagaa ttttgagcaa
     7441 ctgctatatt aaaaagatcc ttatttaaac gaacttgaat tttataagta tctaaaatct
     7501 tatatctatc tttatcgtta tcataagaat tttgcaagcg cactaacata tcttgataat
     7561 ttcctgtttt aatatcaacc aatgttaaag ccgctaaact ctgattaaaa tctctttcaa
     7621 ttttcatcgc tgtgcttaaa gcgactttag ctttagcata ttctcctatt ctagcgtata
     7681 aaagacctaa agataaacta gattcaaaat tgccttgaga atttaattgc tgtatagcct
     7741 tggaatcaaa gtccattttt gcataaattt tagcagacaa atactttgca acatcagaat
     7801 acggctccac atctgttctt tgcaacattt gtaaggcctc agggtaatat cctttgtaat
     7861 aattaatcaa gcttaaataa taatcatata attttgattt tccttctttt ggaagataca
     7921 cttgagctaa atcaatataa tatctaaatt tttccttatc attaagcttt aaagcacaaa
     7981 cagcagcatt gatagcagct acactttgat tttctccatt ggctatagct ttcttgaagc
     8041 tttcaaaagc ttcttggaat ttattctcat tcatttgaga aacgcctaaa ttataattag
     8101 ataaagattc gttatatacg gcaacttgct cataaacttt taaagcctgt tcaacctcac
     8161 cctttaaata taaagcattt gctttttgga tcataccatc aattctttgc atatcattgt
     8221 atttatatga ttcatcaggc ataacaacag gttgttctaa aggcttagaa gctataatat
     8281 ctggtttaat ttttccttca ctaaaagtta aataaaaaag tgtaaaaact aaaatgcaaa
     8341 taatccccaa agataaaccc acaagagaca taaacttacg atctttatac caaggcgtag
     8401 gctcttgact ttcaacttct tcaaaagttg atacatcttc aggcgcactt tctcttgtaa
     8461 atttaaaacc actatcacta ttttcttgag gtaattcttc tggcaatgat gcaaattctt
     8521 catcttctgg agcttgcccc tcttgcccct taaatccctc taaactctca tcaagtcttg
     8581 gttgatttaa gccatcttcg ggtttttcta gtattatatc ttcttgttca gccatctata
     8641 ctctttaaaa atattttttc aaagcatcag gaatatgaat ttttccttct ttatcttgat
     8701 aattttccat aatcgctacc aaggttcttc ctactgccaa agatgagcca ttaagagtgt
     8761 gaacgagttc attttttcct tgttcgtttt tatagcgaat tttagcgcgt cttgcttgaa
     8821 aatcacgaca atttgaaacc gagctgatct cacgatattt attttgtcct ggaagccaca
     8881 cttcaagatc tacagttttt gccgcactaa aacccaaatc tccggtgcaa agcatcaaat
     8941 gtctatgcgc taaacctaaa gaactcagca aatcacttgc acactcaagc atttcattaa
     9001 acacgctatc actttgctca ggtttagtga tacttacaag ctctactttt tcaaactggt
     9061 gttgtcttat aatacctctt gtatcacgcc ctgcactgcc tgcttctttt ctaaaacaag
     9121 cactataaca agtcattttt atcggtaaag tttcactagc taaaatttct ccgctgtaaa
     9181 gattggttac tggaatttca gaagttgaga tcaaatacaa atcctcatca tctaccttat
     9241 acatatcttc tttaaatttt ggcaactgac ctgtcccaaa catagtagca ccatttacca
     9301 aaaaaggtac attaacaaat tcaaatccac gacttctatt aaaatctatc atataattta
     9361 ccaaagcacg gcttaataaa gctccttcgt tcttaagcac acaaaaacgg ctttgtgaaa
     9421 tttttacccc acgcacaaaa tcaagccaat ttaaactctc tcctaattca aaatgctctt
     9481 ttggagtaaa atcaaagcta ggtggattta aaactttttt aagctccaca ttttcatctt
     9541 cgtcctcacc cacaggcaca cattcatctg ggatatttgg gatggcatga gcgatttctt
     9601 caagctcatt ttctaaagca tttactttag cgctttgctc attaattttg cttttatttt
     9661 cgcttaattt tgcttttaaa ctttctttat cttcggctgt agcaagttct ttactgaatt
     9721 tattttgaaa agcttgaaat tcttctaaag ctgttttttc tttttttaaa cttgcaaaaa
     9781 gttcagcaag tttttttaag atattttcat caactttttt attttttaac tttttagcca
     9841 cttcatcaaa attattttgc aaatttttta aatctagcat tttctactcc ttaaagtccg
     9901 attttttcat aaattttttg cattttttct tgggcgattt ttcttgcttt tgtcgcacca
     9961 aaatccaaaa tttctttcaa atgcgaaggc ttttctaaaa gctcattata tttttctctt
    10021 gcttctttaa aataagcatt tacaagctcg tttaaataca ttttaaaatg tccataaccc
    10081 tcaccacctt tttcatagcg tatttgtaat tctttttgcc ctgattcatc taaaaaaagc
    10141 tttgcgattt taaaaatatt gcagttttca tgatcttttg gatcttctaa agcggtgcta
    10201 tctgtaacta tggaagaaat ttgttttttt aaggtttttt cactgctaaa aatatctata
    10261 gtattttgat aagatttact catttttgcc ccatcagtgc ctacaactac agctacttct
    10321 tcattaactt tagcctttgg aagggtaaaa atttcacccc attcattatt aacttttaaa
    10381 gcaatatcac gtgcgatttc aacatgttgg atttgatctt ttcccacagg aacaatttgt
    10441 gtatcaaaaa gtaaaatatc agctgccatt aaaacaggat aagaaaaaag cccatgtgaa
    10501 gcactaagcc ccttagcaac tttatccttg taactatgcg cacgctctaa taaacccata
    10561 ggagtaaatt gcgataaaat ccaataaagc tccataactt ccttaacatc actttgcaac
    10621 caaaaaacgc ttttttgagg atctatacca aggcttaaaa aagccgcagc agcttttaag
    10681 gaattttgtt taagtttttc tccatcttga gaagaagtca tggcatgata attagcaata
    10741 aacataaaca tttggctttt ttcttgtgca tctaccattt gcttaatcgc accaaaataa
    10801 ttacctatat gcaaatcgcc acttggctga aggcctgtta atactctcat tttatcacct
    10861 ttttaatctc gcttaaaagc tcatctatat ttttattttc tatatttaaa ataaaatttg
    10921 ccttttgttc atacttgctt aaacgctcat tatataattt ttttgcttta atttcatcat
    10981 aaaataaagg tcttttagaa atttcatctt tgtctaaacg cttttttaaa tattcaaaat
    11041 ctgcttttaa ataaatacaa aaacctgctt tttctaaatt tgaaacatta acaaaacccc
    11101 cgcctgtagc aatacaagct ttctcacaag aactaaaaaa atcagccatt ttttgctctt
    11161 gttctctaaa aaaattttcc cctttttgtt caaaaatttc actgactttt tgattaaatt
    11221 tttgttctat taaaaaatca ctatctaaaa aaacaagatc taaatcctta gctaaagctc
    11281 ttgctaaagt gctttttcca gaacccataa atcctataaa aacgatattt ttagctttca
    11341 tcattttctt tactgccctt tttacgcgaa gcaatcacta aaggcacacc ttcaaaatta
    11401 aattcttttc tgatttgatt ttgtaaataa cgcttatagc taaaatgcaa ggccttagga
    11461 cgattcataa taagtgcaat ttttggcggt gctaagtcat attgtactgc ataataaatt
    11521 ttaaccaatt tcccataatc atgcggcaaa ggatgtgctc ttgtggcatt ttctatcaag
    11581 gtattaagct tagaagtttg gattttttga gtgaaatttt caaaaatttg caaaatttta
    11641 tcgagtaaaa catgcaccct ttttccactt aaagctgata cgctaatcac gggtgcgtaa
    11701 gctagaaatt taaaacgatc aagacgcaat tcttttacag tcttatcaaa atccatctca
    11761 cttttatccc atttatttaa aacaataatc acacctaaat aatgcttagc cacaagccca
    11821 gcaatgcgtt catcaagctc gttaaagccc tcatgcgcat ctaaaaccaa aagtgctatt
    11881 tgagaatgag ataaaatttt ttccgtgcga tttagggcaa agcgttcgag tccttgaatt
    11941 ttaccccttt ttctaatacc tgcagtatca acaaattcta tcactttatc tttatgaact
    12001 acactttcat taacaggatc tatagtagtt cctgcaatag aacttacaac actgcgttct
    12061 tgtttaacca aagcatttaa aagacttgat tttccaacat ttacacgccc tacaataccc
    12121 actctgatat gattttgatc gacttcttta aattgaaatt cttttccttc ttcataatgc
    12181 tctaaaaaat cttctaaatt ttcttcttca tcggggatta aaaactcttc atgtaaaaat
    12241 ttttcaagcc attcataaag ttcatctaag cctacattat gggttactga aagattaaag
    12301 atttccttta cgccaaaatt tgcaaactcc caagcccttt cttcatcttt tttattatct
    12361 actttattaa tcactaaggc tataggtttt ccaagttttt ttaaagaata aaaaaactgt
    12421 ctatcctcat catcaggcgc taatttccca tcaactagat aaagtatgat atcgctttct
    12481 ttagctactt ttaaagtgtt ttttttcaca tttttaaaaa gttcatcact ttcatcaagc
    12541 cccccactat caataagcat ggcttttttt gaatgaatat gaatttgcgt tttatttgta
    12601 tctctagttg tgcctgaaat atcacttgta atagctattc tttgtcttgc cattctatta
    12661 aaaaggcttg attttcccac atttggctta cctataagta taatgctttg catttttttc
    12721 ctagaaaatt atatttttaa aattatataa aatttggctt aatattaagc aaaaaaagac
    12781 tagaattaac ccagatttta gtcaaggaaa aaaaatgcta aaagtaatca agcataattt
    12841 aggaatttat ttcatgattt tagcatgttt ggattttgca cttatgggag cttgtgcaaa
    12901 aattcttagc aaggaaatga gttctataga aattatgttt tttagaaata tcataggaat
    12961 ttttttcata gcctatcttt taaaacgatc taaggcacat aaagaagggg gatatttttg
    13021 gctcttggta tttcgtggag tagtaggcac gctttcacta tatatgtttt tctataatgt
    13081 ttcaaatatt acactaggtg gagcttttgc ttttcaaaaa actgctccta tttttattac
    13141 tttaatagct tttgttgttt ttaaagaaaa tattggcatc aaaggctgga taggaatttt
    13201 aatagcattt gatggagtgc ttttaatcgc tcagccttgg gctcataatt taaatcattc
    13261 aggctttgat ttaaaaaatt cagttatagg tatcacgagt ggatttttag ccgctttagc
    13321 tcttacaagt gtaagagaac ttagaaaatc ttacactaca gaacaaattg ccttttcttt
    13381 tatcctttta ggaaccttaa tgcctttaat ttctatgatc agtgctgaat tttttgaacc
    13441 acagcatctt gattctttac atttagattt cattctagca ccttttgtga tgccaagtct
    13501 tacagcttgg cttatcattg ccattatggg aactttaggc accatttatc aaattcatgt
    13561 cactaaagct tatggtatcg ctaaacaagc aggagtggtt gccggagtta gttatcttga
    13621 tgtagtattt agtatgatag ttgggataat tttgggagat aatttaccaa gtactatggt
    13681 ttttttaggt ataataggca ttatttttgg tggattaatt ttagttaaga acaaaggaaa
    13741 aaaatgaaaa aaatgatact cattgctggt ccttgcgtga tagaaagcaa agatttgatt
    13801 tttaaagttg ctgaacagtt aaaaaatttt aatgaaaatc caaatataga attttatttc
    13861 aaatcaagtt ttgataaggc caatcgcaca agtattaatt cttttagagg tcctggtctt
    13921 gaagaaggat taaaaatttt acaaagcgta aaagatgaat ttggtatgaa aatcttaacc
    13981 gatatacacg aaagcaatca agcaaaccct gtaagtgaag tagctgatgt cttgcaaatt
    14041 cctgcttttt tatgtcgtca aactgattta cttgtagccg cagcaaaaac taaggcaaaa
    14101 gttaatatca aaaaaggaca atttttaaac ccaagcgata tcaaatacag cgttaaaaaa
    14161 gttctacaaa cccgtggcat agaagatgaa ggctatgaag ctgctcaaaa aaatggtgtt
    14221 tttgtagctg aaagaggagc tagctttggc tatggaaatc tagtagtaga tatgcgttct
    14281 ttagttatca tgtgtgaatt tgctccagtt atttttgatg ctacccatag tgtacaaatg
    14341 ccaggggctg caggtggaag tagcggaggg aaaagcgaat ttgtagaacc tttagcaaga
    14401 gcggcagcag ccgtaggcat agatggcttt ttctttgaaa cacatattaa tccttgcgag
    14461 gctttatgcg atggatctaa tatgcttaat cttacacgcc ttaaaaattg cgttaataca
    14521 ttactagaaa tacaaaatat cataaaggaa aacaaatgaa tattattgaa ggaaaattaa
    14581 atttagactc aaatacaaaa attgctatca ttaatgcaag atttaatcat atcatcacag
    14641 atcgccttgt agaaggagca aaagatgctt ttttaagaca cggaggcaaa gaggaaaatc
    14701 taagccttat acttgttcct ggtgcttttg aacttccgta tgcgttaaaa aaagctatag
    14761 aaagcaaaaa atttgatgca atttgttgcg taggtgcagt aattcgtggc tcaactccgc
    14821 attttgacta tgtttcagca gaaaccacca aaggcatagc caatgtgagt ttaaatcata
    14881 atatccctgt aagctttggt gttttaacta cagatacaat agaacaagcc atagaaagag
    14941 ctggaagcaa agcaggcaat aaaggctttg aagctatgac aactgtaatc gagatgttaa
    15001 atttaagcaa ggagctttaa tggcaacgcg tcatcaagtt cgccaaagcg tcatctcctt
    15061 gctttatgct tttgagttaa attctcaaaa caacgttttt gtagatgaaa ttttagatga
    15121 aaaaaaaata cgcaatgaac aaaaaaattt tactttaaat ttatataatg gaattttaga
    15181 taatttaaac aatattgatg aaaccttaaa ttcatttcta aatgataatc aaattacagc
    15241 tttaggacat gtagaaagag ctatactaag acttggagct tatgagttac tttttaccga
    15301 tactcctagc gccattgtca tcaatgaggc tatagaactt gctaaagaac ttgctaatga
    15361 caattctcca aaatttataa atggagtttt agatgcctta ataaaggcta aaaaatgaag
    15421 ctttgtgtcg cacttgatct ttctacaaaa gaagaatgct tacaacttgc caaagaatta
    15481 aaaaatttag acatatggtt aaaagtaggt ttaagagcat atttaagaga tggttttaaa
    15541 ttcatagaag aacttaaaaa agttgatgat tttaaaatat ttcttgatct taaaattcat
    15601 gatattccca acactatggc agatgcttgc gaagaagtat caaaacttgg tgttgatatg
    15661 atcaatatcc acgcaagtgc tggaaaaata gccatacaag aagttatgac acggcttagc
    15721 aaattttcaa aaagaccttt agttttagca gtttctgctc ttacgagttt tgatgaagaa
    15781 aatttcttta gtatttatag acaaaaaatt gaagaagctg taattaattt ttcaaaaata
    15841 tcctatgaaa atggacttga tggtatggta tgctctgttt ttgaaagcaa aaaaattaaa
    15901 gagcacacaa gttcaaattt cttaaccctt actcctggaa ttcgtccttt tggagaaaca
    15961 agtgatgatc aaaaacgtgt tgctaatctt gcaatggcta gagaaaattt gagtgattat
    16021 atcgttgtgg gaaggcctat atataaaaat gaaaatccta gggctgtatg tgaaaaaatt
    16081 ttaaacaaaa tacacagaaa aaatataagc gaaaacgata tagagcaaaa ttatgaagta
    16141 attcagcaaa aagaatggga tatgtgtaat cactttgaag aatggattaa aactcagcct
    16201 gataaagaac atgctttaaa agaattttat gctaagtgtg ggataaaata ttgaattatc
    16261 aacaattaga atgcgattac tttaatcttt acaatcagtt tcttagcgtg gattttcaaa
    16321 tttcattatt tgaaaaagat cataaaggtt taattaaaga ttttatattt ttttattatc
    16381 aaattttaaa acaaaaagac ttgagctact tgcttgaggt aagaaataaa atttccctga
    16441 aagtttataa ttatatgcaa gagcactcca cttctccaaa agatttaagt cttatttgtc
    16501 taagagaaaa taaacatatt aaattttttc aaatatttta caaggctctc gcttattttg
    16561 tagcctttag aaaaaaactt gatggagaac aaaaaattaa aaatttgatt tcaaatatca
    16621 atgactgttt tggctatcat ttcttgaatt ctgactttaa caatcttcaa aattttcaaa
    16681 aaagcgattt gttcacctta cctgaaaaac atcttaaata ttttcacttc gccatgattc
    16741 atctttgttt catggtttta aatcctttaa attttaaaga ctctaatcgg catcttgata
    16801 aagcgattaa ttatcttgtc gatggaactt ttgaaattta tgagctcatc tttaaagaat
    16861 attttttatt gttttcaaaa gataaagagc tcaaggatga atttagaaaa ttaaaaaaat
    16921 tagaatttaa aattctaatg c
//
LOCUS       DARGEY010000024        16718 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.024, whole genome shotgun sequence.
ACCESSION   DARGEY010000024 DARGEY010000000
VERSION     DARGEY010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16718)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16718)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16718
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.024"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            33..248
                     /locus_tag="SF008_000692"
     CDS             33..248
                     /locus_tag="SF008_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HEG8232979.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLS
                     SMEISTLKKEKLHVKDELSQYLANYKK"
     gene            258..1355
                     /locus_tag="SF008_000693"
     CDS             258..1355
                     /locus_tag="SF008_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HEG8232980.1"
                     /translation="MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLGNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(1387..1983)
                     /locus_tag="SF008_000694"
     CDS             complement(1387..1983)
                     /locus_tag="SF008_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEG8232981.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFAYESNGRLCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDDMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFVEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNMIRTPLLDFAYMWFLKEKWGKLKII"
     gene            complement(2066..4130)
                     /locus_tag="SF008_000695"
                     /pseudo
     CDS             complement(2066..4130)
                     /locus_tag="SF008_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862692.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(4273..5211)
                     /locus_tag="SF008_000696"
     CDS             complement(4273..5211)
                     /locus_tag="SF008_000696"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HEG8232982.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVARLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADKLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEPTNGAHRNKEATAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
     gene            complement(5213..6427)
                     /locus_tag="SF008_000697"
     CDS             complement(5213..6427)
                     /locus_tag="SF008_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEG8232983.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAIQDAGFSEELDKEEFGIVS
                     ASGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVVGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVVSVMALRDGVVPPTINQLVKDDECDLDYIPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            complement(6454..6687)
                     /gene="acpP"
                     /locus_tag="SF008_000698"
     CDS             complement(6454..6687)
                     /gene="acpP"
                     /locus_tag="SF008_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8232984.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            6797..7465
                     /gene="tenA"
                     /locus_tag="SF008_000699"
     CDS             6797..7465
                     /gene="tenA"
                     /locus_tag="SF008_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HEG8232985.1"
                     /translation="MMLFSNLIKENQKIWNAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCYARLALNSNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELDIK
                     DESLVNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYK
                     EWILTYGSENFQNEAKEFEDFVNSYTSSVGAQKFQKLSEIFHTVTRLEVAFWEHSLRM
                     ELNL"
     gene            complement(7489..8346)
                     /locus_tag="SF008_000700"
     CDS             complement(7489..8346)
                     /locus_tag="SF008_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase iron-sulfur
                     subunit B family protein"
                     /protein_id="HEG8232986.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPMLTTCSTCMLTLTKAKNTLDKGAKERIN
                     IFLAQGGMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDAF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTNSKARLPIIHLSQLVGLALGLSKEMVGLDY
                     NIIDASKIA"
     gene            complement(8350..9315)
                     /locus_tag="SF008_000701"
     CDS             complement(8350..9315)
                     /locus_tag="SF008_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HEG8232987.1"
                     /translation="MKIIIDRFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPSSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKGCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHAWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRCPKGI
                     SSVSDIANLRVMAIKKGLNEGLGPDHAEAFYKDLVEGSGRLNEIYLALRSEGVIGSMG
                     KTDIAFKLMRAGKMNPMHVFGEDEIEGHKDLVKMIKAAQEAAVKE"
     gene            complement(9312..11147)
                     /locus_tag="SF008_000702"
     CDS             complement(9312..11147)
                     /locus_tag="SF008_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEG8232988.1"
                     /translation="MGEFSRRDFIKTACISVGALVASSSGVYALDDSSKMDKDANLPS
                     CDVLIIGSGGAGLRAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGD
                     SYKLHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGG
                     ASKKRCNYSADKTGHILMHSCLDDAISSGVKFLMDHELLDIGVVDGKCEGVVLRDIQS
                     GGIYPVLCKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPT
                     GVANGGTLITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGY
                     GEGLGAYVLCDVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIE
                     VAKFEDMSTKIAGIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDAS
                     FGKGVKTHELAQKWQVRFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLL
                     AKKLEDIQARYEKIRIPNPNEVMNTAFTDYVELGNLILLSRCACLAARNRLESRGAHT
                     REDYPKRDDKNFLKHSIVNLENDELKLSYKDVVVTEFSLDGRRVQ"
     gene            complement(11485..11895)
                     /locus_tag="SF008_000703"
     CDS             complement(11485..11895)
                     /locus_tag="SF008_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEG8232989.1"
                     /translation="MMDLKEIAQFLDDNAPAFLATLGTCGNPRVRPIQSPLLVGDKIY
                     FCTANTKGLFKHIKNYNGIEFCSCAKDGTFLRLRANAVFEPNLEVKKMMFKKYPYLVN
                     LYETPQNPKFEVFYLDHLSARMQFMNGEFKLFKA"
     gene            complement(11902..12645)
                     /gene="fabG"
                     /locus_tag="SF008_000704"
     CDS             complement(11902..12645)
                     /gene="fabG"
                     /locus_tag="SF008_000704"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HEG8232990.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKTIVESDGELSYLVNNAGVTNDKLALRM
                     KLEDFSSVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSDEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            complement(12717..14195)
                     /locus_tag="SF008_000705"
     CDS             complement(12717..14195)
                     /locus_tag="SF008_000705"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HEG8232991.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGSGRIIYQNLVRINKAIENKELEKNENLQKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDVSPKSGLNFIKD
                     LKEFCENLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAAQNENYKGMREEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFENL
                     LTMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKIKTYDEKPQMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNAAIKAVEAVDTCLGEIIECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQAKGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            14275..15336
                     /locus_tag="SF008_000706"
     CDS             14275..15336
                     /locus_tag="SF008_000706"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEG8232992.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKA
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLFCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKNNHSGLSPRMKLLAQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIAFWILVLISSSNAVNLTDGLDGLATVPSIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALIGFLWYNCYPAQVFMGDSGSLALGGFIGFLAII
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWVENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            15336..16544
                     /locus_tag="SF008_000707"
     CDS             15336..16544
                     /locus_tag="SF008_000707"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEG8232993.1"
                     /translation="MKISLFGYGKTTRAIAENLVDKFGPFDIYDDHFTETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPPKHKLIQKAKNLQSEYDFFYDVMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVMGGNVGTPLAELNPYAKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVVILPKIYANTPTKAHKISYEDEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALAIEKILLDTLSYELLNSFVMEKNKLEELKDSQNR
                     LWVNDTKATNESAVMAALSRYKDKKIHLIIGGDDKGVDLSNLFDFMKGFDIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYAERG
                     KVFKECVNKI"
BASE COUNT         5623 a         3196 c         2201 g         5698 t
ORIGIN      
        1 aattttaaat ttcactaata caaggagagt ttatgctaca tgaatataga gaattaatgt
       61 cagagctaaa aggtaaagat gctcattttg ataaactatt tgatcgtcat aatgaacttg
      121 atgacatgat taaagatgca gaagaaggta gaacttctct tagcagcatg gaaatttcaa
      181 ctttaaaaaa agaaaagctt catgtaaaag atgaacttag ccaatatcta gcaaattata
      241 aaaaataagg caaaacaatg tttggaagta aaataaacca ttctgatctt caaaaacttg
      301 aagaagaaaa taaaaatctt acacataaaa ttgaaaaatt tcaatcggaa aatttagaat
      361 taaaaaataa aattacatca ttagaacaag cggctttaga gtctaaactt aaaacagatc
      421 ttttaaatgt tttattaact ggggttttaa aaaatattac tattattcaa ggcgatatgt
      481 tagaaaatgt aaataaggca gaagttatct ctagctattc taaaacttct cttgctgaaa
      541 tggatgaact taaccatatt gctaattcta tcaatgcctc tttgggaaat attacagaat
      601 cagccaataa aacaagagat gttgcaggaa cattgcatag aagtgtagat gaaattacta
      661 atgtaattaa tctaattaaa gatgtttccg atcaaaccaa tcttttagct cttaacgctg
      721 ccatagaagc tgcacgcgca ggtgaacatg ggcgtggttt tgctgttgtt gccgatgaag
      781 taagaaaact agctgaaaaa acacaaaaag caaccacaga agttgaaatg aatatcaacc
      841 ttctaaagca aaatgcaaat gaaatgtata ctcaaagtga gcaagttgaa aaaatttcta
      901 tagattctaa tgctcatatt atgagttttt ccgaaaaatt tactcactta gtaaatgaag
      961 cgcattctac taattcaaat gcagttggta tcgcttcaga agctttcgta tctttagcaa
     1021 aactagatca tatagctttt aaattaaatg gttataaaga aattttttcc aaatcaggaa
     1081 agcaattagc cgatcataca tcttgtcgct taggaaaatg gcttgctagc acaggaaaag
     1141 aaagatttgg gcaaaataaa agcttcttaa aaattaacga gccacatgaa aaagttcatg
     1201 aaaatatgaa taatgctata acaatagcaa atacagaaga tattagcaaa gatattactc
     1261 aacacagcat aattaataaa tgcgaagttg ctgaaaatgc atcgcttgat cttttcaatg
     1321 tatttaaaga aatgcttgat gagtcagatc attaaaatcc taggttgaac ctttttaagg
     1381 tttaacctaa ataatcttta attttcccca cttttccttt aaaaaccaca tataagcaaa
     1441 atcaagcaaa ggcgttctta tcatattttt acattttttt tcaaaatcct gcaccttaac
     1501 ataaacagct tcaatctctt catcatcaac tccacctcca gaagaaattt tatctttttc
     1561 atcaacttct acgaaataaa agctttgctt gcttacacct gaaccaaacc ctgtataaaa
     1621 atctcctatt ttttctaaat ttttaggagc atatcctagt tcttctatac attcttcttt
     1681 tgctatttcc tctaaagata attttttatc cacaagccca gaacaaagct ctatagtata
     1741 gcccatatca tcatctttta cataatcttt atcatgcatt tgatgatacc aaagtggtat
     1801 acgaaattgg cgtacaaaaa taaaactttc taattcttta tgatacaaaa gcactgaaac
     1861 actatcttta gattctataa aatcccaagt gcaaagccta ccattacttt cataagcaaa
     1921 tctcttaggc ttaatataat ttgatttttc aaaagaaagt tcttttaaat ttttaaacgc
     1981 cataataaaa ccttttattt atttttcaca ttgtacttta tttttgcttt tttgaaaata
     2041 taaaggtgat taaagcctta aaaaattaaa aatcatattt ataacttaac caaaaacttc
     2101 ttccttctat ataatcttga tagcgatttg catatccagc aggattagcc ccatcccatc
     2161 ttgtaacttg cggatcaaag aaatttttat caaaaagatt ttgcactgca aaacttaagc
     2221 tagattgctt attgatttta taatttatcc ctaaatctac tatataaaaa ggcttatatt
     2281 tttgccatgg cagactacca ttaccgccac cttttgcttt agctatagta tcaagtcttg
     2341 ctcgtgtttt tatataggaa ctaaatttac ctcgctcata gtttaatttt aacattgcta
     2401 tatgtcttgg taaattttct attctatcac caccaaacca atttttttga ccatctttgt
     2461 agcgattatc cataaaagta taacttgaat ttaggctaaa gccattgtaa gttttggtat
     2521 taaatgcaaa ttctatacct ttagtctgcg tttttccaag attaatagga cgcttacaaa
     2581 caatgccatt gctacaatta atatcatttt gcatacctgt taaatcttca ctactgattt
     2641 gatttgtaaa atcagtaata aatcctgtaa tagaataatg tgcaaaatca aataccataa
     2701 aatcaacacc caattcataa tttatacttt cttctggttt taagtcaggg tttccaaaat
     2761 aagcattatt attggcataa ttataatatc catttgtcaa ctgcttggca gcaggagttt
     2821 tatagccttt tgaaacacct cctttcaagg ctatattatc atttaagtga taaaccaaat
     2881 aaaccctagg cgtaaattca gaatcaaaca aatcgctata aatataacgc aaacctgtag
     2941 taaaaatcaa atcatcggtt ataaaatact cattttcccc ataaagcgca accgtggttt
     3001 gatcaagatt tttacctctt atttgactac ctgcgcttgc ttgatcattt tttaatatct
     3061 cataatcaat ccttgcacca aaggtattta ctaaattacc gtattgacct aaattccaag
     3121 gtaaaacaac cttaccttct cctacccaaa tttggctatg cagctcctta tccttagtgc
     3181 taccatattg taaatatgag ttagttgaac caaaatcata gttaccatca tgattcaaaa
     3241 caatattatc cttaaaaagt tgtctttcac ttttaatagc cctactactt gtagaattca
     3301 ctgaaatttc attaatatat cgttctatat caaaatatat attattttta tcatctactg
     3361 tccaattaag cctagaacca aaacccaagc tagtaaaagc accttgggct atgactagca
     3421 atttgataat tatcaggtct ttgattgtta ttattccaaa ccggtgtagg ccattttaaa
     3481 tcagaagctg ccttatcata atacttcaac cttgcagaaa ttgataatgt atcttcaatc
     3541 aaaggagttg ctacataagc attaaatccc ccagcattac catagtgatt agagtgctgt
     3601 tgtaaaagag tattaaattc tatatttgct tcgattttat caggattttt cttagtgata
     3661 atatttatca caccgcctac agcatcactg ccataaagtg tagaagctgg accacgtata
     3721 acctcaatac gctctatcat agacaaaggt ggcagatatc ctgactcact gccactaaaa
     3781 ccattatcat aaaacccatt tgcaacactt tgacgttttc catcaattaa aactagagta
     3841 taagaactac caaaacctcg tatgctaaaa tcataagtgc ctgttttatt catagtcaca
     3901 tctacacctg gaatatctcc tatagcctct cctatatcct taattggctt tttttcaagc
     3961 tcttcttttg taatgataga aatactagca ggcgcatcaa ccaaatcttg ttcaaaacca
     4021 ctagcactaa ccacaacatc attaagttga tatttttctt ctgcttttaa caaagctcca
     4081 gataaaatta aaaaacacag taaacttttt ttaaatttta tatttttgat ttgagtcaaa
     4141 ttaattcctt taaaaataat tattttgata tttaaaatca tttttgaagt ataaaaaaag
     4201 aatactttta attaacttaa ttttgataac aattataaat aataaaatta tttaaaaaag
     4261 cgaagtaaaa gcctaagcct cttgataggc tccaagcttt aaaattttct gcatacgatt
     4321 tgcagaaagt tctcgtacat caatattttc aagttcattt agagattttt ttacataatc
     4381 agcaatagct actgctgtag cctctttatt gcgatgtgca ccatttgtag gctcatctat
     4441 aacatcatca attaaacctt gagattttaa atcatcagcc gttaccttca tagccttggt
     4501 tgcagcttca ctttttgcag gatcattcca aagtattgca gcacaacctt caggagaaat
     4561 tactgaaaaa acagaatttt tcatcattgc aagtttatct gcaaccccta tagctaacgc
     4621 cccgccacta ccgccttctc cgataactat agcaatggtc ggtattttca aatcacttaa
     4681 ttcatataaa tttctagcga tagcttcact ttgtcctctt tcttcagcac ctattccagg
     4741 ataagcacct ggagtatcta tcaaaaataa aataggaatt tgaaatttct ctgcaagtct
     4801 tgctactctt aaggctttgc gatatccttc aggatgtggc atcccaaaat ttctagcgat
     4861 tttatctttt gttccacgtc ctttttgctc accaattaca attatttttt tctctcctaa
     4921 ataacccata aaacaaacaa tagcaggatc atctctaaag gcacgatcac catgtatttc
     4981 gtgagcgtca tttaaaataa gttcaatata gtcaagagca taagggcgat ctggatgacg
     5041 cgctaattgc aaacgctgaa aatcacttaa attcttataa gttttagaaa tttctttttc
     5101 aagatttttc tttaaaattg atacagcttc agtatctcct ttaatctgag cattgataat
     5161 gtcctcgtca atttgctgaa tatttttttc aaaatctaaa taagaagcca tattaatcta
     5221 cttttttaaa tacaacacag ccatttgtgc caccaaaacc aaaagaatta ctcatcacca
     5281 cttttaaatc tacttttctt gatatatttg gaatataatc aagatcacat tcatcatctt
     5341 ttacaagctg attgattgta ggtggaacta ccccatctct taaagccata acactaacaa
     5401 ctgcttcaat tgcacctgca gcacccaagc aatgacctgt ttgtcctttg gtggaactta
     5461 taagcgggat attattgcca aaaagctctt taattgctgc tgtttcattt ttgtcattta
     5521 caggggttga agttccatgt gcattgatat aatctacctt tggattccct gccatattta
     5581 aagctttttt catagctctt aaaggcccat ctaaagttgg tgaagtaata tgatgcgcat
     5641 ctgcactttc tccaaatcca attaattcag cataaatcgt agcaccgcgt tttttagcct
     5701 cttcatattc ctcaaaaact aaagctccag caccttctcc catgacaaaa ccatctcttt
     5761 ctttgtcaaa tggtcttgaa gcatgctgtg gatcttcatt tctagttgat aaagctttca
     5821 ttgaagcaaa accacctata cccacaggac aaatcgcagc ttctgcacct acgactaaca
     5881 tctttttagc atttcccaaa gctatacttt tataagcttc tcctatagca tgagttcctg
     5941 ctgcacaagc tgtaacacaa gaaatatttg gccctttaag tccatgctct atagaaatca
     6001 aacctcctaa catatttaca agtgccgaag gtatgaaaaa aggggaaatt ttacgcggac
     6061 ctcgctcgga acaaataatg gaattttttt ctatgttagg caaacctcca ataccagaag
     6121 ccgaaacaat gccaaattct tctttatcta attcttcact aaatccagca tcctgtattg
     6181 cttctcttgc tgctttaatt ccaagttgta tgaaacggtc aatttttttt acttctttgc
     6241 catcaacaac ctctaatgga tcaaaatttt taacttcagc tgcaatttga acaggaaagt
     6301 ccgtagcatc aaaaagagta attttattta ctccgctttc tccattgcaa attgctttaa
     6361 atgaactttc tttatctaaa ccaagggcat tgatcatacc aatacctgta actacaactc
     6421 ttttcaagaa taagctcctt gcaagaaaaa aaattatttt tttagattgt caatataatt
     6481 tacaacatct tcaattttaa ttaatttttc agcatcacta tctggaattt ctacttcaaa
     6541 tttttcttct aaagccataa taagctctac aacatctaaa gaatcagcac ctaaatcttc
     6601 aataattttt gattccattt taactgcatc tgcatcaata cttaattgct ctactactac
     6661 tgcttttaca tcatcaaatg ttgccatttg ttctccttca aaaaattaaa ataaagcgta
     6721 ttttactata aaaagcttaa aatatttata gtttttcatt atacttgaaa ataaaatatt
     6781 aaaacataaa ggaaaaatga tgcttttctc taatttaatc aaagaaaatc aaaaaatttg
     6841 gaatgcttat ctacatcatg attttgttaa aaaattggaa gataaaagcc taaagcaaga
     6901 aaattttctt ttttatctca agcaagatta tatttatttg cttaattacg caaaatgtta
     6961 tgcaagatta gcacttaact caaatactgc aaaagaactt cgttttgcta tgaaatttca
     7021 aaattatata gttgaaggag aaatggaact tcatcgtgca attttatctc ttggcattaa
     7081 tgcagatgaa ctcgatataa aagatgaaag tttagtcaat atagcctatt cgcgttatat
     7141 gttaagcgta ggtgaaaatg gagatttttt agatatgtta gttgctctta gtgcttgcgc
     7201 tataggctat gcaaaaatag gtgctgaaat tataaatcgt ttaaaaaatg aaaatttaaa
     7261 agatcatcct tacaaggaat ggattttgac ctatggaagt gaaaattttc aaaatgaagc
     7321 taaagaattt gaagattttg ttaattctta tacttcaagt gttggtgcac aaaaattcca
     7381 aaaactcagc gaaatttttc atactgtaac acgcttagaa gtggcttttt gggagcattc
     7441 tttaagaatg gaattaaatc tttaaacatg ggctttttgc ccatgttttt atgcaatttt
     7501 acttgcatca ataatattat aatctaaacc aaccatttct ttagaaagtc ctaatgcaag
     7561 tcctactaat tgtgataaat gaataatagg caatcttgct ttagaattag tataatcttg
     7621 aaatctttct tgatagatat caagctgcat ttgacaaagt ggacaaggtg ttacaacaca
     7681 atcagcttga ttttcacttg cattattgac aatttgacta gacatttttt tcacagattt
     7741 ttctgcagga taagaagcat gaaaaccaca acaatcaagg cgtttttcaa aaggaactat
     7801 tttagcccct aaaacttcta ctacactttc aaaacttttt ggattggttg aactttcttt
     7861 tttaccgaaa gcatcttcag gtcttaaact atggcaacca taaaataaag ctacttttaa
     7921 atttgaaagc ggctttttca ccttgctttt taaattatcc aaatcctcat aaagctccca
     7981 caaaagactt gtaataggcg ttgaaccttg atatttcatt ccaccttgtg ctaaaaaaat
     8041 attgatgcgt tcttttgcac ccttatcaag agtatttttt gctttagtta aagttagcat
     8101 acaagtacta caagttgtaa gcattggcat tttcatctct tctgctaaag caatatttct
     8161 tgcattagct accaaagtcg caataggatc aacacactgc gcttgagaag ccccacaaca
     8221 actccacccc ttgatttcat tcaacttcca acccaaaata ggtgcaatag cttcaagtga
     8281 aattttagat tcttttgcag cttgagataa aacacaacct ggaaaaaaag cgtattcttt
     8341 ttgcatattt tactccttaa cagcagcttc ttgtgccgcc tttatcattt taaccaaatc
     8401 tttatgacct tctatttcat cctcgccaaa aacatgcata ggattcattt ttcctgcacg
     8461 cataagttta aaagctatat ctgttttacc catagaacct ataacaccct cagaacgcaa
     8521 agcaagataa atttcattca agcgtcctga accttcaact aaatctttat aaaaagcttc
     8581 agcatgatca ggccctaagc cttcatttaa acctttttta atcgccatca ctcttaaatt
     8641 tgctatatca cttactgaac ttataccctt tggacaacga tcagcgcact cttgacaatg
     8701 aacacaaagc caaagtccat tcattacgct gggttttaca tgcaacatag gatccttacc
     8761 tcgagagtct gccgctgcac gccaagcatg agtaaaaaca aaaggttgca tataatcgct
     8821 actatctgct tctaatttat tacactctga ggcacagcta ccacataaaa tacaatccca
     8881 ttgcttgcta atacgatcaa attcttcttg actttgttta cagccctttt ccgctgaaaa
     8941 ttcatttttt gccaccatgg caggacgaat ttttcttaaa ttttctatag aaggctccca
     9001 atccacaatt aaatcagaaa ttactctaaa atttccaagc ggagaaatgc gtatacttga
     9061 aggattatca tattctttta ataaatcttg cattttagta tcacaagcaa gataagaatg
     9121 cccattcaca cgaactgcac aagccccaca aattgcagat tgacaagagg cggtaaaatt
     9181 taaagtaata tcttttgttt ttttgataaa aagcaaaaga gagagcagag tttttccttg
     9241 tatatcctta tcatcaatat cataactttg ttcatatttt tccttgccat taaaacgatc
     9301 tatgataatt ttcattgtac tctccttcca tcaagtgaaa actcagttac cacgacatct
     9361 ttataactaa gttttaattc atcattttct aaatttacaa tgctatgttt taagaaattt
     9421 ttatcatctc gctttggata atcttctcta gtatgagccc cacggctttc aagtctattt
     9481 ctagctgcta aacaagcaca gcgagaaagt aaaatcaaat taccaagctc tacataatct
     9541 gtaaaagcag tattcatcac ttcattagga tttggaatac gaattttttc atatctcgct
     9601 tgtatatctt ctaatttttt tgctagaaga tcgagttttt cttgagttct aaaaatcccc
     9661 atattatccc aattttgact tcctagctct tctcgcaatt catacatttc ttgaccattt
     9721 ccgccattat ttgtaatttc tttaaatcta acctgccatt tttgagcaag ttcatgagtt
     9781 tttacccctt ttccaaaact tgcatcttta gcataatttg tcgcaccaat gcctgctaaa
     9841 tgccctgtta caactgcatc ggctaaagaa tttcccccta gtctattagc tccatgtata
     9901 gaaatgcaag aagcttctcc acctacataa attccagcaa ttttagtact catatcttca
     9961 aatttagcca cttcaattcc acccatagaa taatgcgccg ttggacggat aggtacagga
    10021 gtatctacta aatcaatatt ttcaaaaagc attgcagtgt gacgaatttt tggtaaatct
    10081 tttaaaattt tttcttttcc taagtggcgt acatcgcaca aaacataagc tccaagtccc
    10141 tcgccataac ctctaccttc acgaatttct gtttctatag cacgcgcaac cacatctcgc
    10201 ggtgcaagct ccattttttc atggtaattt ttcataaaac gctcaccacg attatttaaa
    10261 agatatcccc cttcaccgcg cgccgcttct gtaataagag ttccaccatt tgcaactcct
    10321 gttgggtgaa attgtatcat ctcaggatct tcaaaaccaa gtcctgctct aagagcagct
    10381 gccacaccat ctcctgtggc aataaaagga gttgaagttc tattataaaa tatccttgtg
    10441 tatccccctg tagcaatcac caaagctttg cataacacag gataaattcc accgctttgt
    10501 atatctctta aaacgacacc ctcgcatttt ccatccacaa cacctatatc caaaagttca
    10561 tgatccatta aaaatttcac accactacta atagcatcat ctaaacaaga atgcattaaa
    10621 atatgacctg ttttatctgc agaatagtta cagcgtttct tagaagctcc tcccattaaa
    10681 cgctgagcta ctccaccttg ctcatttctt gaaaacaagg ttcctataaa atccatatta
    10741 aaaatagcct ttccagctaa ttcgcaaaat tttaaagccg cgtcttgatc taccaaataa
    10801 gctccgcctt taatagtatc ataagcatgt aatttatagg aatctccatt agaaaaatca
    10861 gtaactccat taattccacc ctctgccata caagttgcgt tacgcgatgg catcatcttt
    10921 gtagctacta caacgcttaa ttttggattt tcttttctca ctgcggctgc agcacgcaaa
    10981 cctgctccac ctgatccaat tatcaaaaca tcgcaagaag gtaaatttgc atctttatcc
    11041 atcttagatg aatcatctaa agcataaact ccacttgaac ttgcaactaa agctcctaca
    11101 ctaatacagg ctgtttttat aaaatctctt ctagaaaatt cacccatatc attctcctta
    11161 tttaaaaaaa ttaataataa tttttaatgt aagtcaatct tacataaccg catgccaaaa
    11221 atccaaaaac aaactctcct ttcaatataa aatggattaa aaacaaattt ataatttagt
    11281 aaatataaaa aagcataaga taaataatca aagaagatag atgaatataa taaaataaat
    11341 attaaaaaat ttttgcaata tatcataatc tattccttgc aaattaaacg gaatgattat
    11401 accttaaaaa aataacaaaa agttaatatt aattaagata atatttatct taattaatat
    11461 atagttaata aaattatcaa atcattaagc cttaaaaagc ttaaattctc cattcataaa
    11521 ttgcattcta gcgcttaaat gatcaagata aaaaacttca aattttggat tttgcggagt
    11581 ttcataaaga tttacaagat aaggatattt tttaaacatc atttttttaa cttctaaatt
    11641 tggttcaaaa accgcattag ctctaagtct taaaaaagtc ccatcttttg cacaagaaca
    11701 aaattcaata ccattataat tttttatatg cttaaaaagt ccttttgtat ttgctgtgca
    11761 aaaataaatt ttatctccca caagcaatgg actttgtata ggacgcactc taggatttcc
    11821 acaagttcct aaagtggcta aaaatgctgg tgcattatca tctaaaaatt gtgctatttc
    11881 ttttaaatcc atcatttttc cttacatata taaaccacca ttgatcttaa gcacatcgcc
    11941 tgtcacataa gaggcataat cactaagtaa aaacgctaca caattagcca cttcttcagg
    12001 ttctgcaaag cgttttaaag ggatattgtc ttgataggtt tgtttgattt catcacttaa
    12061 aacttcagtc atatcgcttt ttatgaaacc tggagtcaca cagttaaagc gtaaatttct
    12121 acttgctcct tctttagcaa aagatttagt catagctatc attccacctt tactagcaga
    12181 ataatttact tgtccagcat tgcccatttc tccgacaata gaagcgatat ttacaacagc
    12241 accaaaacgt tttttactca tggtttttaa agcttctcta caacctaaaa aagctgagct
    12301 taaatttgta tctacaacgc tactaaagtc ctctaatttc attcttaaag caagtttatc
    12361 atttgtaacg cctgcattat ttacaagata acttaattct ccatcactct caactatagt
    12421 ttttacaccg ttttcaaact catcttcttt gcttgcatca aatttaatca cagcagcaac
    12481 gccaccactt gcaataattt catcttttaa agcatctgca agttcaggtt ttgaacgata
    12541 attgatccaa actttaagtc caaaacccgc caaagttttt gcgatagaag cacctattcc
    12601 cttacttgct ccagtaatta aaacattttt tccactaaat ttcattatct atccttaata
    12661 agtttaattt taaaaattgc aatcttaaca aatttcttat aaaaaaggca aacaaactaa
    12721 aataaagcct cattcatttc ttttggaatt tctaagtcta aaattttaag cacgcttgca
    12781 gcgatattgc taagccccat attatcttta atctttgaaa ctccctttgc ttgcacaaaa
    12841 acaaaaacat caaaagtggt gtgattggta agcaaatttc ctttttcatc ttgcatagcc
    12901 tcgcaatttc catgatcact tgtaatgata aaagcataat catgcttttt tgcacattct
    12961 ataatctcgc ccaaacaagt atccaccgct tcgacagcct ttatagcagc attaaaatca
    13021 cctgtatgtc caaccatatc tccatttgca aaatttacca ctataaaatc ctcacccttt
    13081 tctatgcctt ttttcactgc atcacacact tcaaaagcac tcatttgggg tttttcatca
    13141 taagttttta tcttggggct tgggattaaa acccttgttt cattttctaa aagctcttct
    13201 tttccgccat taaaaaagaa agttacatgg gcgtattttt cggtttctgc ggtatgaagc
    13261 tgactaagcc ctgctttaga aatcacttgc gctaaagtat tttcaatttt ttctttttca
    13321 aaaagcacag ggagtttaaa tttatcatca taaacactca tagtaagtaa attttcaaag
    13381 attttttcgc gttcaaactc tttaaaatcc ttagaattta acacttcaac aagttgtttc
    13441 attctatcat ttctaaagtt gataaagata atgccatctt cttctctcat gcccttgtaa
    13501 ttctcatttt gagctgcttt gataaactca tcagtaacat tttcatcgta agatttttgt
    13561 aggtattcta ataaatttgg cactttataa gccttaccta acaagcactc ataatactct
    13621 tttaccctat cccaacgctt atctctatcc atagcataaa aacgcccaca aagcgtagca
    13681 aaatgcacgc ctaagttttc acaaaattct tttaaatctt ttatgaaatt taagccactt
    13741 tttggactta catcacgccc atcagtgatt gcgtgagcaa aaacttcatt gccatttttc
    13801 gcacaaattt caagcatggc tttaaaatgc gtatccatag aatgcacccc gccatcacta
    13861 taaagcccta taatatgcac tcttttacat tttgctaaaa gtttttgtaa attctcattt
    13921 ttttcaagtt ctttgttttc aatggcttta ttaatacgca ctaaattttg ataaataata
    13981 cgcccacttc ctatacacat atgccctact tcactatttc ccatctgccc ttctggcaaa
    14041 cctacagcta aaccactcgt ttttagtaaa gaatttggga cttccttaaa aagcttttca
    14101 taacttggtt ttttagctgc ttcaaaagca ttaaacttac tattcttatt ataccctatt
    14161 ccatctgtaa taattaaaac gcatttttgc ttcatttttc tctcttttat aagaattttt
    14221 ttggttagat tttactaaaa ttaaactttt aaaaaccaaa aagaaggcta ggttttgtat
    14281 tatctttcag atttaagtca ttatgctttt tttacttata ttagtgtgcg tgcaggattt
    14341 gcatttttta tcgctttatg tttgtcttta tttttaatgc ctaaatttat tacttgggca
    14401 aaagctaaaa atgctagtca acctatttac gaatacgccc cagaaactca taaaaccaaa
    14461 tgccatactc caaccatggg tgggcttatt ttcattagtt ctgcagtaat cgcaagttta
    14521 ttttgtatca aatttgataa tatttttgct ataagtgctt tactttgttt gatacttttt
    14581 tgtttgatag gactcataga tgatttaggc aaagttctaa aaaaaaataa tcattcagga
    14641 cttagtccaa gaatgaagct tttagcacaa atcatcgctg gacttatctg catcttacct
    14701 ttatatttta gttcagagct tagcacggaa ctttttatac ctttttataa acaccctctt
    14761 tttgatatgg aaatttttgc cattgctttt tggattttgg ttttaatttc tagctctaat
    14821 gctgtaaatt taaccgatgg acttgatggc ttagctacag ttccaagcat tttttcttta
    14881 tctactttag ggatattctt atatttgagt ggaaatttaa attatagtga atatctactt
    14941 ttgccaaaaa ttcaaggact tggtgaagta gtgattattt gtgctgcatt aatcggtgct
    15001 ttaataggat ttttatggta caactgttat cctgcgcagg tttttatggg ggatagcggg
    15061 agtttagctt taggtggatt cataggattt ttagctatca ttagcaaaaa tgaaatttta
    15121 cttttactca taggttttgt ttttgttctt gaaactgttt ctgtaatttt acaagttgga
    15181 agttttaaaa tttttaataa aagagtattt aaaatggcac ctattcatca tcattttgaa
    15241 aaagttggct gggtagaaaa taaaattata gtgcgttttt ggatgatagc cttactttca
    15301 aatttacttg cacttgcatc aataaagcta agataatgaa aatttcactt tttggatacg
    15361 gaaaaaccac acgcgctatt gctgaaaatt tggtagataa atttgggcct tttgatatct
    15421 atgatgatca ttttacagaa acaaaaaaag atacactagg aaatttactt ttaaatccta
    15481 atgattttga tgataattta agcgatattg aaattcctag tccaggtttt ccaccaaagc
    15541 acaaactcat tcaaaaagca aaaaatttac aaagcgaata tgactttttt tacgatgtca
    15601 tgccaaaatc cgtttggata agcggaacca atggcaaaac caccaccaca caaatggcta
    15661 cacatttatt atcacacatt ggtgctgtta tgggtggaaa tgttggaact cctttagcag
    15721 agcttaatcc ttatgcaaaa ctttggatac ttgaaacttc atcttttacc ctacactaca
    15781 ctcataaagc taaacctgaa atttatgcac ttttacctat aagtcctgat catctttctt
    15841 ggcatggaag ttttgataat tatgttcaag ataagctaag cgttttaaaa agaatgaatg
    15901 aatgtgatgt agtaatactg cctaaaattt atgcaaatac tccaacaaaa gctcataaaa
    15961 taagctatga agatgaaaaa gatctagctg ttaaatttgg cattgatacg gaaaaaattt
    16021 cctttaaaag tcctttttta ctcgatgcta tcatggcttt agctatagaa aaaattctac
    16081 ttgatacttt aagctatgag cttttaaata gctttgtaat ggaaaaaaat aaactcgaag
    16141 agcttaaaga cagtcaaaat aggctttggg taaatgacac taaagctaca aatgaaagtg
    16201 ctgtaatggc tgcacttagt cgctataaag ataaaaaaat ccatcttatc atagggggag
    16261 atgataaggg tgtagatctt agcaatttat ttgattttat gaaaggattt gatatagaac
    16321 tctatgctat aggtattagt actgaaaaaa tgcttgatta tgcaaaaaaa gcgaatttga
    16381 aagcctataa atgtgaagtt ttatctaagg ctgtaaatga aatttcaaat cacttaagag
    16441 tcaatgaagt ggctctttta agtcctgctt gtgcaagttt agatcagttc aactcttacg
    16501 cagagcgtgg aaaagtcttt aaagaatgtg tgaataaaat ttaatttatt ttacaatcca
    16561 tacaaatata ttaaactttc caaaccccta aaaacaccct attctctcta aaaaccctaa
    16621 ccagcaacaa actctttttt aaacacgatt ctaagcacca tctaaaacaa caataaaaat
    16681 aaacatagga tttatatata aagtaagtaa tgaagaca
//
LOCUS       DARGEY010000025        16369 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.025, whole genome shotgun sequence.
ACCESSION   DARGEY010000025 DARGEY010000000
VERSION     DARGEY010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16369
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.025"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            93..1079
                     /locus_tag="SF008_000708"
     CDS             93..1079
                     /locus_tag="SF008_000708"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEG8232994.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNY
                     KQDIKIHLKIDTGMHRNGICVENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLS
                     LYAHRLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFRYNGKGELVLGNGKV
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            1082..1549
                     /locus_tag="SF008_000709"
     CDS             1082..1549
                     /locus_tag="SF008_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HEG8232995.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFRNFAS"
     gene            1653..3119
                     /locus_tag="SF008_000710"
     CDS             1653..3119
                     /locus_tag="SF008_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HEG8232996.1"
                     /translation="MKLDIMLDFANKASDIIANKIVPNTDIIMVVLLIVCGLYYSFLT
                     RFVQFRMLSSVFKILTEKNEGHAKEHISPFQALMISTASRVGIGNIAGISLALATGGA
                     GALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIKKALGSHFFGAFFA
                     FILIITYAYGFNGLQSQTMTSSFKVYYDMFNPNAAVDFASSSWPMIIGIVLTIFGAWM
                     FFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVIHMILQSAFDFKAIFGG
                     FAGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLIDVVVCTSSG
                     FLVLFSMAYLGLGESKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYY
                     AQANVKYLTNSKFVMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTNIISLLL
                     LGGIVNKVLKDFNMQQKSGIDPKFNASKLGIKNAECWD"
     gene            complement(3147..3875)
                     /locus_tag="SF008_000711"
     CDS             complement(3147..3875)
                     /locus_tag="SF008_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG8232997.1"
                     /translation="MIEVKNLQKKYGELEVLKNINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLELADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKLLLAKVGLADKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNVANRIFFMDKGKIAVDA
                     SPKEVFENPSNERLREFLNKVLNH"
     gene            complement(3868..4611)
                     /locus_tag="SF008_000712"
     CDS             complement(3868..4611)
                     /locus_tag="SF008_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8232998.1"
                     /translation="MNQKNIRIFVFFVIIILWGYFSFPIEILKIQDPSGVASYGYTEN
                     AKAYLKSYLITLLLTACAVIIGVIIGFSLAILHFSKFKTLNFIIDEYIDIIRGTPVIL
                     QLMIFAFVIFTFIDNLYAAILALGLNSSAYIAEIVRSGINSVDKGQMEAARAMGLDYK
                     TSMKEIILPQATKNILPALANEFISLFKETSVVGFISVIDITMQSQSLQAVLYNPKPI
                     IFTGLVYYVSVKIFSYFAKKLELRMNKND"
     gene            4694..4873
                     /locus_tag="SF008_000713"
     CDS             4694..4873
                     /locus_tag="SF008_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8232999.1"
                     /translation="MLEFPKNKVVFMEILDFILIVIFVFLMIVLVIGFNRQMMQKNKE
                     REERFKKYKKGEQNE"
     gene            4866..5435
                     /locus_tag="SF008_000714"
     CDS             4866..5435
                     /locus_tag="SF008_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEG8233000.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRARELNPDLEVVIASLNS
                     ELLVKGANSISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLTK"
     gene            complement(5465..5830)
                     /locus_tag="SF008_000715"
     CDS             complement(5465..5830)
                     /locus_tag="SF008_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HEG8233001.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKHFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            5953..6945
                     /gene="pheS"
                     /locus_tag="SF008_000716"
     CDS             5953..6945
                     /gene="pheS"
                     /locus_tag="SF008_000716"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEG8233002.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDE
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            6942..9263
                     /locus_tag="SF008_000717"
     CDS             6942..9263
                     /locus_tag="SF008_000717"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEG8233003.1"
                     /translation="MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDK
                     VVVGYVKEKIKHENSDKLSICQVDIGSETLQIVCGAANVDAGQFVAVATKGAIMSNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNG
                     LYNYRAIELKEEIQTNLLLSLRLAQIEGLGKNSIENLLNYATHSTGVLFNAYDLSSFS
                     EKDEEFTINLSKQVHGETKVSYKDKLLSFSGIFQNNESRCKDDSKIIIIEANYTDPLV
                     IADAKIYHKDQDEKMLYRSFRGSEPKLNLGMDFLLGIFEQIPNLVIYSSSQQILTDKE
                     LPIIPISIESISDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLS
                     DICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNLRKRAVASGYFESLHYVL
                     DNEEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKIIKLFELG
                     VVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKY
                     NILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPKTYICELDLDLIRQDFKIAKPYS
                     KFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFRLVDIYSDENLKEFYSITISF
                     SFRDINKTLEDNQVNECMDKILNTLKNLGLDLR"
     gene            9260..10546
                     /gene="aroA"
                     /locus_tag="SF008_000718"
     CDS             9260..10546
                     /gene="aroA"
                     /locus_tag="SF008_000718"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEG8233004.1"
                     /translation="MKIYKLQTPVNAILENIAADKSISHRFAIFSLLTQEENKAQNYL
                     LAQDTLNTLEIIKNLGAKIEQKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLA
                     GISGFFVLSGDKYLNNRPMRRISKPLTQIGARIYGRNEANLAPLCIEGQKLKAFNFKS
                     EISSAQVKTAMILSAFRADNVCTFSEISLSRNHSENILKAMKAPIRVSNDGLSLEINP
                     LKKPLKAQNIIIPNDPSSAFYFVLAAIILPKSQIILKNILLNPTRIEAYKILQKMGAK
                     LEMTITQNDFETIGEIRVESSKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINA
                     KELRVKESDRIAVMVENLKLCGVEARELDDGFEIEGGCELKSSKIKSYGDHRIAMSFA
                     ILGLLCGIEIDDSDCIKTSFPNFIEILSNLGARIDY"
     gene            10536..11369
                     /locus_tag="SF008_000719"
     CDS             10536..11369
                     /locus_tag="SF008_000719"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEG8233005.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQSLSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGASTPDWIIQKVIAKIKNFKI
                     N"
     gene            11501..13171
                     /locus_tag="SF008_000720"
     CDS             11501..13171
                     /locus_tag="SF008_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEG8233006.1"
                     /translation="MSEVNKKVQGGVDDYLEEEDFGQLLEAFDKSREEAATEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQDDNSKLLFNVGDGIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSAKELNSSPV
                     QEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRIKEREVLNEINNDDKVTLGDIIKDQLA"
     gene            13171..13659
                     /locus_tag="SF008_000721"
     CDS             13171..13659
                     /locus_tag="SF008_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233007.1"
                     /translation="MKKYITMSILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGDSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            13656..15239
                     /locus_tag="SF008_000722"
     CDS             13656..15239
                     /locus_tag="SF008_000722"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEG8233008.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKFPKDELMQILSD
                     IEVAITRSSTDVDVNFLNHAKKLKALVRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKSGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNISVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            15226..15888
                     /locus_tag="SF008_000723"
     CDS             15226..15888
                     /locus_tag="SF008_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8233009.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLADFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLVSYEFFYKNQKLEISNLDYELL
                     KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGIGYK
                     LC"
     gene            15882..>16369
                     /locus_tag="SF008_000724"
     CDS             15882..>16369
                     /locus_tag="SF008_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEG8233010.1"
                     /translation="MLKTKNIFIVFFVVLALIFGFIFYTFTNSYLNFLLIKQYEQKIK
                     SLDDVLKFSLLEHLNDANIKNFAKDTRADFIILNNDMKISSVKNPDFFSNLKEGEILN
                     FNSKKILTKSFIYKGYKYIIIVYPRFLDLELFWTKMAIGFGVCLLFVFILMLLLGRRI
                     EK"
BASE COUNT         5888 a         1986 c         2899 g         5596 t
ORIGIN      
        1 attacactaa aaactatcag tttagaggcg ataaaatttt atacgttaag atagatagta
       61 aaggtaaaat gaaaatttta gcagagcaat aaatgtcttt aataaaaatt gatcaaaaag
      121 cttatgaata caatttaaga catattgcta aaaaaatagg gagttttcaa agattaattt
      181 gtgtttttaa agataatgca tatggacatg gagctaagct tttagctcca ttagccaaaa
      241 atttaggagt ttcttttgtt gctgttaaga gtgaagaaga agctcgagaa atcgaagaat
      301 tttttgagaa tatattaata ctatcacatc gtcctcatgg taatgaaaat tctcgattta
      361 tttatgcttt aaatgacatt tctcaagtaa aaaattacaa gcaagatata aaaatacatc
      421 taaaaataga tacaggcatg catcgcaatg gaatttgtgt agaaaattta gagcatgcta
      481 taaatcttat tcaaggtagt gatttaaaac ttactggaat gtttacacat tttgctagtg
      541 cagatgaaat ggatggaagt ttttttgttc aaaaagaaaa ttttcaaaaa gctaaaaaga
      601 tagtaaaaaa atatttttca aatttattat ttcattcgca taattctgca gcattattta
      661 gagggaaaat tcccgaagat gaatattgta gagttgggct tgttcaattt ggatatgggg
      721 attcaaattt aaaaagagtt ttaagcttgt atgctcatag attaagtcaa aggattttac
      781 aaaaaggaca gagtatagga tatggaggca tttttactgc tgcaaaggat atggaagtag
      841 caacttatga tttgggttat gctgatggtc ttttccgata caatggaaaa ggggagttag
      901 tgcttggaaa tggaaaagta atgcttggaa agatgtcaat ggatagtttt tcttgtgaaa
      961 attctggtga ggaaatttgc gtgtttaaag atgctgatat ttgggctgat ttttttcata
     1021 ctattaacta tgaaatttta gtaaaattaa atcctaatat tcaaagagtt ctagtataaa
     1081 tatgtttaat atagttttag tccaccctag aataccgcaa aatacaggta gtataggtag
     1141 aatgtgcttt aatgctggtt ttaaacttca tattgttaaa ccaactgttt ttgatatttc
     1201 acaaaaggct gttagaaggg caggacttga ttactgggat aaattagagc ctattatttg
     1261 ggagaatctt gaagaatttt tgaatgaaaa tatgatttat aaaaatcgct tttttttcgc
     1321 aacaactaag agtcaaaaag cttattttga tgcagaattt caaaaaaatg atttcttatt
     1381 ctttggaagt gagagttatg gtttgcctat ggaattaatg caattaaatt gggaaaatgc
     1441 tataactata cctatgaaat cttatggaag aagtttaaat ttagccacaa gcgttggtat
     1501 aatctcttat gaagctttaa gacaaaattt tagaaatttt gcttcttaaa agtttcaaat
     1561 ttacacaata gcttaaaaca aataaaatca taaagtcctt tttataaaaa ttatgttaaa
     1621 gtaaaattca gattattttt tgaggagttt ggatgaaatt agatattatg ctagattttg
     1681 ccaataaagc gtctgatatt atagctaata agattgtccc aaatacagac attattatgg
     1741 tagttttact tattgtttgt gggctttatt atagtttttt aactcgcttt gttcagtttc
     1801 gtatgttgag ttctgtattt aaaattctta cagaaaaaaa cgaaggacac gctaaagaac
     1861 atatttcacc ttttcaagca ttaatgatct caactgcttc tagagttggt ataggaaata
     1921 ttgctggaat ttctttggca ttggctacag gtggagctgg tgctttattt tggatgtggg
     1981 ttatggcatt ttttggtggt gcctcagcat ttgctgaaag taccttagct caagtttaca
     2041 aatcaaaaga tgatacaggc gggtttaaag gtggtccagc ttattatata aaaaaagcct
     2101 taggctcaca tttttttgga gctttttttg cttttattct tattattact tatgcttatg
     2161 gatttaatgg acttcaaagt caaacaatga cttcgtcttt taaagtttat tatgatatgt
     2221 ttaatccaaa tgctgctgta gattttgcat caagttcttg gccaatgatt attggtattg
     2281 ttttaactat ttttggtgca tggatgtttt tttctcacca tactaaaata ggtaaaatta
     2341 gttctttaat tgttcctttt atggctttag cttatgtttt acttgccgtg attgctgttt
     2401 taatgaattt tgataaaatt ccttctgtga ttcatatgat tttacaaagt gcttttgatt
     2461 ttaaagcgat ttttggtggt tttgctggtt ctgctttggt tatagggatt aaaagaggac
     2521 ttttttcaaa cgaagcgggt atgggctcgg cacctaatgc agctgcagca gctttgacaa
     2581 gtcatccagc taaacaaggt gttatacaag ccttttcagt tttaattgat gttgttgttt
     2641 gtacaagttc tggattttta gttctttttt ctatggcata tttaggactt ggagaaagta
     2701 aaattgacgg tggaatgcct ttagttcaag aagctatgcg tgagtattac ggtagctttg
     2761 gaatccattt tattactata gctattgttc tttttgcaat aacttcttta ataggaaatt
     2821 attattatgc tcaagctaat gttaaatatt taacaaattc caaatttgta atgaatttgt
     2881 ttagaattac agctgtggct atgattttta taggctcgca aatgaattta aaacttgctt
     2941 ggaatttggc tgatttgact atggctttca tggcaacgac aaatattata tctttattgc
     3001 ttttaggtgg tatagtaaat aaagttttaa aagattttaa tatgcaacaa aaatctggta
     3061 tagatcctaa atttaatgct agcaaacttg gaattaaaaa cgctgaatgt tgggattaaa
     3121 attcataagc cttagtggct tatgaattaa tgatttaaaa ccttgtttaa aaattctctc
     3181 aatctttcat tgctaggatt ttcaaatact tctttagggc ttgcatcaac agcaattttt
     3241 cctttatcca taaaaaatat acgattggca acatttctag caaagcccat ttcatgagtt
     3301 actacaagca tagttaaacc ttcttttgca acatctttca taatgcttag aacctcgcct
     3361 atcatttcag gatctagagc tgaagtaggt tcatcaaata aaataacatc aggattcatc
     3421 atcaagcttc tagcaatagc tatgcgttgt ttttgtccgc cagagagctt atggggcatt
     3481 atattttctt tgtctgctaa acccacctta gcaagaagta attttgcttt ttttatggct
     3541 tcttcttgac ttaaaattcc tgttttaatg ggcgttaaac ataaattttc cataacattt
     3601 ttattggcaa aaagattaaa atgctgaaat accatgctaa ctttttgcct gatcttatta
     3661 atatcaattt ctttatcaag tatgttttgc ttattgatta aaatttcccc actatcagct
     3721 agttctaagc gattgatgca gcgtaaaaat gtactttttc cgcctccact tggacctatg
     3781 atagctatta catcgccttt tgagattgta gtgttaatat tttttaaaac ttctaattct
     3841 ccatattttt tttgtaaatt tttaacttca atcattttta ttcatcctaa gttcaagttt
     3901 ttttgcaaaa tagctaaaaa tttttacact tacataataa acaagtccag tgaaaataat
     3961 aggttttgga ttgtaaagta cggcttgcaa gctttgactt tgcatggtaa tatcaataac
     4021 actaataaat cctacaacag aagtttcctt aaataaagaa ataaattcat tagctaatgc
     4081 aggtagaatg tttttagtag cctgtggaag aataatttct ttcattgaag ttttgtaatc
     4141 aagtcccatt gctcttgcag cttccatttg tcccttatct acactattaa tgccacttct
     4201 tacaatttct gctatataag ccgagctatt aagtcctagt gcaagaatgg ctgcataaag
     4261 gttatctata aaagtaaaaa ttacaaaagc aaaaatcatc aattgtaaaa ttactggtgt
     4321 tcctcgtata atgtctatat attcatctat aataaaatta agcgttttaa atttagagaa
     4381 gtgtaaaata gctaagctaa aaccaataat cactccgata ataacagcac aagcagttaa
     4441 taaaagcgta ataagataac tttttaaata agcttttgca ttttctgtat agccatagct
     4501 tgcaactcca ctaggatctt gaatttttaa tatttctatc gggaaagaaa aatagcccca
     4561 taaaataata ataacaaaaa aaacaaaaat tcttatattt ttctgattca atttgtaaac
     4621 cttttcagag aaattattta aaaaaagatt ttatagaaat atctttgaat tttctctaaa
     4681 gatttaaaaa aatgtgttag aatttcccaa aaataaggtt gtatttatgg aaattttaga
     4741 tttcattcta atagttattt ttgtgttttt aatgattgtt ttggttatag gttttaatcg
     4801 tcaaatgatg caaaaaaaca aagaaagaga agaaagattt aaaaaatata aaaaaggaga
     4861 acaaaatgag taaaaaagta ttaattccat tggctcaagg ttttgaggaa gctgaattta
     4921 taggaattgc ggatgtttta aaacgagcaa gagaattaaa tccagatttg gaagttgtta
     4981 tagcttcgtt aaacagtgag ttattggtaa aaggtgctaa tagcattagt ataaaagcag
     5041 attgttctat agaggatgtt gatatagaaa atttagatgc cattgctttg gcgggtggct
     5101 ttgaaggtat gatgaatctt aagaattcaa atgttatttt aaatatcatt aaacaacttc
     5161 atagcaaaaa taaaattgtt gccgcaatct gtgcttctcc tatagtctta aatgaagcag
     5221 gtgttttaga gggcgagttt gcttgctatc ctagttgtga agttggactt aatggaaatc
     5281 gtgttaacaa ggctgtagtt gtaaataaaa atgttataac ttcagcaggt ccagctacgg
     5341 caattctttt tggtttagaa ctagctaaaa agttatgcgg tgatgaaatt tatcaaaaat
     5401 tatatgaggg aatgttgcta cctttgacaa aatagtttaa atggtagttt ttctaccatt
     5461 taaattaaaa taaagcttga ggattttctt tttttgtttt ttccttaggc agttcaaaac
     5521 ctccaagcat atgaaaatgc aaatgaaaaa cttcttgtcc actatttttt ccacagtttg
     5581 ttaccaagcg atatccactt ttatctacac ctaaaagaac agctaattct tgtatgaaac
     5641 ttgtcatttt ggccataagc tcaggatcaa attcttgaaa gtctttaaaa tgttttttag
     5701 ggattataag tatatgtatg ggtgctttgg gtgcaatatc atgaaatgct agaaaatcgt
     5761 cactttcaag cactttattg catggaagtt taccttcaac tatgagttca aaaattgttt
     5821 tttcttgcat tatttatcct tttttattgt tggtttgata caattatatc tttaaagttt
     5881 ggtttttatg ctgaatttaa aatagttttt aatagaatta gaacttgaaa tattttattt
     5941 aaggtaagaa aattgcaaaa ttttatagaa cagattcaaa aatgtgagaa tttaaatgat
     6001 ttggaagcca ttaggatttc cgttcttgga aaaaaaggta ttttaacaga aggctttaca
     6061 aagcttaaag agttagaaga tgaggcgaaa aaagaatttg ctgctaaatt aaatgcacaa
     6121 aaagaaatat ttaatgaggc ttatttagcc aaatttaaag atttggaaaa tcttgcttta
     6181 gaagaaagaa tgaaacaaga tgctttaaat tttaactatt ttgatgaaag tattacaaca
     6241 ggtgccttgc atcctgttat gagcaccatg gataaaatca tagaatattt tatagctttg
     6301 aattttagca tagaaaaagg gcccttaata gaagatgact ttcataattt tgaagcgtta
     6361 aatttaccta aatctcaccc cgcaagagat atgcaagata ccttttattt tgatgataaa
     6421 aggcttttaa gaacacaaac ttcgccagtg caaatacgga caatgcttgc gcaaaaacct
     6481 cctattagga tgatagcccc tggtgctgta tttagaagag attttgatat tacgcatact
     6541 cctatgtttc atcaagttga aggccttgtg gtggaagaag ggcaaaaggt tagctttgca
     6601 aatttaaaaa gtgtattgga agattttttg cgttatatgt ttggagatgt gaaagttcgt
     6661 tttcgtccaa gttttttccc atttacagaa ccttctgctg aagttgatat ttcttgtgta
     6721 ttttgcaaag gaaagggttg tagagtttgc aaacatacag gttggcttga agttttagga
     6781 tgtggaatag ttgatcctaa tgtttataat tttgttggtt atgaaaatgt aagtggttat
     6841 gcttttggat tgggagtaga acgttttgca atgcttttgc atcaaattcc agatttaaga
     6901 tctttatttg aaggtgattt gagattattg gagcagttta gatgataatt actaaaagtt
     6961 ggttgaatga ttggttagaa cttgaagaaa taagttcaga taaaatagct aaaactttaa
     7021 actctatagg tatagaagtt gatagggttg gcgctttaaa ggctccagat aaagttgttg
     7081 taggctatgt taaggaaaaa attaaacatg aaaattcaga taaattaagc atttgtcaag
     7141 ttgatatcgg aagtgaaacc ttgcaaattg tctgcggtgc tgcgaatgtt gatgcaggac
     7201 aatttgtagc tgttgcaact aaaggtgcta tcatgtcaaa cggtatggaa ataaaagaag
     7261 caaaattgcg aggagtggat tcttgtggta tgctttgttc tagcttagaa ctgggttttg
     7321 aaaaaatcaa tgaaggaatt atgcttttag atgagagtat agggaaatta gaacttggga
     7381 gacctttaaa tacttatgaa atttttaatg atgagctaat agaagtggaa cttactccta
     7441 ataggggtga ttgtttaagt atttatggta tagctcgtga tttagccgca gctttaaatt
     7501 taaatttaaa agaaccaaaa ccatttaaag aaagtgaaaa tgttttaggt atcggtagaa
     7561 ttttgcgctt agcagctgag aaagaactta atggacttta taattatcga gccatagagc
     7621 taaaagaaga aattcaaaca aatttattgc ttagtttaag acttgctcaa attgaaggtt
     7681 tgggaaaaaa ttccatagaa aatttattaa attatgcaac gcattcaact ggtgttcttt
     7741 ttaatgctta tgatttaagt agtttttctg aaaaagatga agaatttacc attaatttaa
     7801 gcaagcaagt gcatggagaa acaaaagtat cttacaaaga taaactttta agctttagcg
     7861 gaattttcca aaataatgaa agtagatgta aagatgattc taaaataatt attattgagg
     7921 ctaattatac cgatccattg gtaattgcag atgctaaaat atatcataaa gatcaagatg
     7981 aaaaaatgct ttatagaagt tttaggggaa gtgaacctaa attaaattta ggaatggatt
     8041 ttttgcttgg tatttttgag cagattccaa atcttgttat ttatagttct tctcaacaaa
     8101 ttttaactga caaagaatta ccaatcatac caataagtat tgaaagtatt agcgatataa
     8161 tagggcaaaa tgttgataaa gatgaagtat taaaaatatt gaaaaaatta ggttttgaac
     8221 tcatactttc aggtgaaggg cttataaatg ttaaagcacc tttacatcgt cctgatatta
     8281 aaaatttatc agatatttgc gaggaagttg taagaattat aggtattgat aatattgctt
     8341 ccaagggttt ggaatttata gaaaaaaatc gtttaaattc tgcatataaa aattatattg
     8401 agtttttgaa tttaaggaaa agagcagtag ctagtggtta ttttgaaagc ttacattatg
     8461 ttttggataa tgaagaagaa cttaaaagat tgggttttga ctctgttaaa ttaaaactaa
     8521 tcaatccaat tacagcagaa cttaatactt taagaacaac ccttttaaat catttgttaa
     8581 atgcagcaag tttaaatgca aaaaattcta aaaaaattat taaacttttt gaattagggg
     8641 ttgttttcaa tgttaataat caagaattaa atcgtatcgc atttatccat tctggcttaa
     8701 aagaagaagc taaaatttcc aacaaggcca aacctgaatc ggtgcaattt tatgattttc
     8761 ttttagacat taaaaatatt ataggtgatt ttaaactaaa atcatcaaaa tataatattt
     8821 taagccctta tgaacaagca gatatttatc tatcggatat taaagtaggt tttataggcc
     8881 gtttgcattt aaaaatagaa aatgagagag atttaccaaa aacatatatt tgcgaacttg
     8941 atttagattt aatcaggcaa gattttaaaa tagctaagcc ttactccaaa ttcccagcta
     9001 tcactagaga tcttagcgtg ttaataccta aaggttttga atacaatcag attaaaaatt
     9061 gtatcgaaga attgaattta gaaatacttg aaaattttcg tttagttgat atttatagtg
     9121 atgaaaacct taaagaattt tatagcatta ctataagttt ttcttttagg gatataaata
     9181 aaactctaga agataatcaa gtgaatgaat gtatggataa aattttaaat actcttaaaa
     9241 atttgggtct tgatttaaga tgaaaattta caaattgcaa acccctgtaa atgctatact
     9301 tgaaaatata gcagcagata aaagcatatc tcatcgtttt gctatatttt cgcttttaac
     9361 acaagaagaa aataaggctc aaaattatct cttagctcaa gatactttaa acactcttga
     9421 aattataaaa aatcttggag ctaaaattga acaaaaagat tcttgcgtca aaattatacc
     9481 ccctaaagaa attttatctc caaattgtat tttagactgt ggaaattcag gaactgctat
     9541 gcgtttgatg ataggatttt tagcaggaat ttctggtttt tttgttttaa gtggagataa
     9601 gtatttaaac aatcgtccta tgagaaggat aagcaaacca cttactcaaa taggcgctag
     9661 aatttatgga agaaatgagg caaatttagc tccactttgt atagaaggtc aaaaattaaa
     9721 agcttttaat tttaaaagcg aaatttcttc ggctcaagtt aaaacagcta tgattttatc
     9781 tgcttttaga gctgataatg tatgcacttt tagtgaaatt tctcttagtc gaaatcatag
     9841 tgaaaacata ctaaaggcta tgaaagctcc aataagggtt agtaatgatg gcttaagtct
     9901 tgaaataaat cctttaaaaa aacctttaaa agctcaaaat ataatcattc ctaatgatcc
     9961 ttcttcggct ttttattttg ttttagcagc tattattttg cctaaatctc aaattatttt
    10021 aaaaaatatt ttgcttaatc ctactcgtat agaggcgtat aaaattttgc aaaaaatggg
    10081 tgccaagctt gaaatgacaa taactcaaaa tgattttgaa actattggtg agatcagggt
    10141 ggagtctagc aagcttaatg gcatagaagt taaagataat atcgcttggt taatagacga
    10201 agcgcctgct ttggctatag cttttgcttt ggctaagggt aaatctagtt taataaatgc
    10261 taaagaatta cgcgttaaag aaagcgatag gattgctgtg atggttgaaa atctaaagct
    10321 ttgtggtgtt gaagctagag aacttgatga tggttttgaa atagaaggtg gatgcgaact
    10381 aaaatcttca aaaattaaaa gctatggaga tcaccgtatt gctatgagtt ttgctatttt
    10441 aggtttgctt tgcggaatcg agattgatga tagtgattgt ataaaaactt cttttccaaa
    10501 ttttatagag attttatcaa atttaggagc taggattgat tattgaatta gcaaaaaact
    10561 atggtttttg ttttggtgtt aaaagagcta ttaaaaaagc agaacaaata aaagatgccg
    10621 caactatagg ccctcttatt cacaataacg aagaaatttc tcgtttgcaa aaaaatttta
    10681 atgtcaaaac tttggaaaat atacaatctt taagtaatga aaaaaaggct attataagaa
    10741 ctcatggtat tacaaagcaa gatttagaag aattgagaaa aaaagatata gaaatttttg
    10801 atgccacttg tccttttgtt acaaaaccac aacaaatttg cgagcaaatg agtaaggagg
    10861 gttatgaagt tgttattttt ggagatgaaa atcatcccga agttaaagga gtcaaaagtt
    10921 atgtaagtac aaaagcttat gtagttttgg ataaaaaaga acttcaaaat ataaaacttc
    10981 ctaataaaat agctgtggta agccaaacaa ctaagaagcc tgagcatttt atggagatag
    11041 taaatttttt aatacttaaa accaaagaag taagagtttt taacactata tgtgatgcaa
    11101 cctttaaaaa tcaagatgcc attaaagaac tctcgcttaa aagtgatgtt atggttgttg
    11161 tagggggtaa aaactcagcc aatacaaaac aacttttttt aattgcaaaa accaattgtg
    11221 aagatagcta tctaattgaa accgaagaag agttaaaaaa agaatggttt ttggataaaa
    11281 aacattgcgg cattagtgca ggtgctagta ctcctgattg gatcatacaa aaagttatcg
    11341 ccaaaataaa aaattttaaa attaattaaa aaatgttttc aaatagaata aaaaagtcaa
    11401 aaatttaaaa aaaattaaca aaaataaaaa aacttaacac taattaaaga aaaataaggt
    11461 aaaatcaatc aatttctaaa aattatttta aaggatcata atgagcgagg tgaacaaaaa
    11521 agttcaaggc ggcgtagatg attatcttga ggaagaagat tttggacagc ttttagaagc
    11581 ttttgataaa tcaagagaag aggctgcaac agagggtgtg attgtagaga tcaaaaatga
    11641 tgaagtttat gtagatatag gtaaaaaatc tgaaggtatt ttagctctta gcgaaataca
    11701 agatgacaat tctaagctat tatttaatgt aggcgatggt attaaagttg ctgttatggg
    11761 ttctcgtggt ggcagatctt tactttctca taaaaaagct ttgagaaaag aaaaagttat
    11821 cgaatttatt aaaaactatc aagaaaatca agatgatatt tttaccgtaa aagtagttgg
    11881 aaaaaataaa ggcggattga tagttgttga tgaaaatgat gttgaatttt tcttaccaaa
    11941 atctcaatat ggcttcaaag aaacaaataa tattataggc aaaacgttta aagttaaaat
    12001 tattaaaatc gacaaagatg agcaaagtat cattgtttct cgtaaaaaaa ctttagatga
    12061 cgagagaaga aaacgcaaag aattgatcaa taatgtagca caacaagaag atttaattga
    12121 aggtattgtg aaaaaaatta ctacttatgg tatgtttgtg gatgtaggag gtgttgatgg
    12181 tcttgttcat tacagcgaaa tttcttacaa aggacctgta aatcctggaa cactttataa
    12241 agagggtgat aaggttccag ttaaagttat aaagtatgat aaagaacgca aacatttatc
    12301 cttgtctata aaagcggctt tacccgatcc atggagcgag ataaaagata ctcttgatgt
    12361 aggtgatacc attaaagtaa tagtatcaaa tatagagcct tatggtgctt ttgtggattt
    12421 aggaaatgat atagaaggat ttttacatat cagtgaaatt tcttgggata aaaatattaa
    12481 aaatccaaaa gattatatca acaaaggtca agaaattgat gttgaagtaa ttgaaatcaa
    12541 tccaaatgaa agacgcttaa gagtttcttt aagaaattta ctttctagac cttttgatga
    12601 atttatgaaa tcttacaaaa ttgcagatgt ggttgaaggg gagatcacct cggtaacttc
    12661 ttttggtgcg tttgttaaac ttggcggtat tgaaggtcta ttgcataatg aagatgcttc
    12721 ttgggataga aacgataaat gtaaagacaa attctctcaa ggggataaaa tcaaggtaaa
    12781 aattatcaaa atagatgaag aaaaccaaaa aatatcatta agcgcaaaag aattaaacag
    12841 ttctccagtg caagaatatg ccaaaattca taaagtcggc gatattgtaa aaggcactat
    12901 ccgtgatatt aaagattttg gtgtttttgt agagctaagt aaaaatgttg atgctttaat
    12961 tcataaagaa gatataagca cttctatgct tgaaaattta aaaattggcg acgatattga
    13021 agctgctata gtttttattg atgaaaagaa aaatagaatt cgcctaagtg ttaaaaatct
    13081 tgttagaata aaagaaagag aagttcttaa tgaaatcaat aatgatgata aagtaacttt
    13141 aggtgatatc attaaagatc agctagctta atgaaaaaat acattacaat gagcattttg
    13201 agtattttat tactcatttt gcttgctgtt gtttttacat tgctttggca atttaaagct
    13261 aatgtaaatt tcattccaca atttgctaaa gatacaaata cgcagccaag cattcaaacc
    13321 caaaatcaag atctttcatg gcaagaagaa ttagcaaaat ggcctacaag agattttacc
    13381 ccagcagcag aaaaatttac cttatatttt gatgcggata ctagcgagct taaggagaaa
    13441 aataaatatt atcaacttat agttggaaaa tatgatattt attctatgtt ttgcttaaga
    13501 cagactttaa attcttttaa tgtgaagtat tttcttctta aatctggcga tagtccagaa
    13561 atctttttgg atacaggcaa tgaaaaactt atagatgata ttatcaaaga attaaaaaaa
    13621 tataaaataa atacagaagt aaaggaaatt tggttatgaa aaaaaagatt atagtgtgtg
    13681 atgctatttt ggataaaggt gtcgatattc taagaaaagc tgaagatatt gagcttatag
    13741 aagctgcaaa atttccaaaa gatgaactta tgcaaatact aagcgatatt gaagttgcaa
    13801 ttactagaag ttctacggat gtagatgtaa attttttaaa tcatgccaaa aaattaaaag
    13861 cgcttgtgcg tgctggggtg ggcgtagata atgttgatat tccagagtgt tctaaacgag
    13921 gagtgattgt gatgaatgtc ccaactgcaa atactattgc cgcagttgaa ctaacaatgg
    13981 cacatctttt aacatcagct agaagctttg tcaatgctca taatttttta aaaattgaaa
    14041 gaaaatggga aagagaaaaa tggtatggca ttgaattgat gaataaaacg ctaggggtta
    14101 taggttttgg aaatataggt tcaagagtag ctatccgtgc taaagcattt ggtatgaaaa
    14161 ttttagccta tgatccgtat atttctgctt ctaagattac agatttagat atggaacaag
    14221 caaaaaattt ggatgaaatt ttagaaaaaa gtgattttat taccattcac acaccaaaaa
    14281 ccaaagaaac caatggtatg ataggaaagc aagaaattgc aaaaatgaaa gatggaataa
    14341 gattaataaa ttgtgctcgc ggaggattat acacagaaga ggctttatat gaaggtttaa
    14401 aaagtggtaa aatagcttgg cttggtatag atgtgttcga taaagaaccc gcgactaatc
    14461 atcctctttt agactttgaa aatatttcag ttacttctca cctaggagca aatactttag
    14521 aaagtcaaga caatatcgca agagaagctt gtgagcaagc attaagcgca gcacgaggcg
    14581 tggcttatcc taatgcctta aatttaccaa ttaaaactga agatttacca ccttttgtag
    14641 ctccttatat agaacttgtt tctaaaatgg cttttttagc tgttcaaatt gataaaaatc
    14701 ctataaaaag tattaaatta gaggctgaag gaattattgg tgagtatgca aattctatgc
    14761 taacttttgc agctgttggt gctttgggtg gaattttagg agagaaaatt aattatgtta
    14821 atgcagaatt tgttgccaaa gaaaaaggag ttgaattatc ttgcgaaact cttccaaata
    14881 gtggttataa taataaactt agcgttaaaa ttatcaccga aaattcaaat atcagtgttt
    14941 caggaacagt gtttaatgaa aatgaacaac gcatagttgg attaaatggc tttaaaactg
    15001 attttaagcc aaagggaaaa atgattattt ttaaaaacaa agacatacca ggagttatag
    15061 ctaaaatcag ttccgttttg gcagctaaaa atatcaatat agctgatttt aggcttggta
    15121 gagatggttt tgggtatgct ttggctgttg ttttgattga tgaaaaagtt caaaaagaag
    15181 tattagatga actaaaacaa ttagaggcgt gtgtatttgt ccaatatgtt gaaatttaaa
    15241 attttaatta tagaagatga tatagattta aacgaactgc ttgttttaaa gttaaaatct
    15301 agcggttatg aagttatatc tttagcggat ttttttggag ttgaagattt gctcgataat
    15361 gagcaaattg atcttttaat agtcgataga aatttgccca gtggagattc tttagaaaaa
    15421 attcaagatt taagagagca aggatataaa gaagcagtta tttttcttac agccaaggct
    15481 ttacatcaag atttactcga aggctttgaa agtggttgtg atgattatgt ttgtaaacct
    15541 tttgatttca atgagctttt gcttcgtatt aaagcaattt taaaacgcca taaaaaagaa
    15601 gaagaaaaac tatcttttgg tgattttatt ttagatttgg ttagttatga attcttttac
    15661 aaaaatcaaa aattagaaat ctcaaatctt gactatgagc ttttaaaatg tttttttgaa
    15721 aatccaaata ccttgcttac tagacaattt ttaagcgaaa gtgtttggaa agatgatact
    15781 acaagtgata aaacaatcaa tatagctcta acaagactta gaaataaatt tccaaaacta
    15841 aaagatcata ttataagtgt taggggtatt ggctataaat tatgctaaaa actaaaaata
    15901 tttttatagt tttttttgtt gtattggctt tgatttttgg gtttattttt tatactttta
    15961 ctaattctta tcttaatttc ttgcttataa aacaatatga acaaaaaatc aaaagccttg
    16021 atgatgtttt aaaattttct ctcttagagc atttaaatga tgctaatatc aagaattttg
    16081 ctaaagatac tagggctgat tttattatcc taaacaatga tatgaaaata agttctgtaa
    16141 aaaatcctga ttttttttct aatcttaaag aaggagaaat tttaaatttc aattcaaaaa
    16201 aaattctcac taaaagcttt atttacaaag gatataaata tattattatt gtttatcctc
    16261 gttttttaga tttagaactt ttttggacaa aaatggcaat cggttttgga gtatgcttgc
    16321 tgtttgtttt tattttaatg ttgttgttag gtagaagaat agagaaaaa
//
LOCUS       DARGEY010000026        15594 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.026, whole genome shotgun sequence.
ACCESSION   DARGEY010000026 DARGEY010000000
VERSION     DARGEY010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15594)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15594)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15594
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.026"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..666
                     /locus_tag="SF008_000725"
     CDS             <1..666
                     /locus_tag="SF008_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233011.1"
                     /translation="ISELSSDKTIGIMPKNYDKLTITNYYNTQEQYNEAEQLGMFGHI
                     NIGLQPLNFTPQSMQTQNLDKDTAIDTFNPDMSVYPQNEDGSYSKEALFMSFLKSTGV
                     SPREGSATLNPIAKSYAEAMAKESFDGSLTSLDDIMTGKVDFASLLKGYAQDGWLDAD
                     IYAMEKGVAWQNTSIGYGGAWFDREFNQAKANGWKASNESINSFVNNIMDRLNNLIGQ
                     TRV"
     gene            complement(724..2151)
                     /locus_tag="SF008_000726"
     CDS             complement(724..2151)
                     /locus_tag="SF008_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEG8233012.1"
                     /translation="MLVNTLYFINSLFFNFCIAFYLMSALQWYSYKFKRVFFHYHKPL
                     WHLYFLFIPYFLFLAFPLYSLAYFALIHTPILYFWNKGIDKKLVFTSKVKWFFVFVFV
                     YNAIFAILALRFSFLFNLFSLPFALFSLKIYEFFTNLYYKKQAKAKLRANENLKIILI
                     TASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQIYIAEAGAR
                     LKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEKAFLHSST
                     QKEEDKLINLYDDKLSLIHSSLEGLEFKIDIENKSYDFKSQILGDFNAQNLCVCILCA
                     HYLGIKLEKIQKQVLNINSVEHRLQVLSREPKFIIDDGFNGNFKGMSTSYKLCKSYKG
                     RKVLVSPGIVEVSEEENIKLAKIINECFDLAIISAQINAEIFKKELKIKTIILKEKSQ
                     LVQTLAKETKHGDLILFSNDAPSFM"
     gene            complement(2152..2871)
                     /locus_tag="SF008_000727"
     CDS             complement(2152..2871)
                     /locus_tag="SF008_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEG8233013.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLSLPQILILHGWGANKELMKQS
                     FCPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLNVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSLKVRFKIRIFKILKLFGLGKFYRYFASKDGANL
                     SPMMYETFKRVVDEDFSEIFAKQKAKSLVFWGESDESTPLYCGEKMHQFLKNSTFYPL
                     EGNHFFFLKHSAFIAQKIKEI"
     gene            complement(2873..3088)
                     /locus_tag="SF008_000728"
     CDS             complement(2873..3088)
                     /locus_tag="SF008_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HEG8233014.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPIMEKLKKSESGKIVILKNNKFEA
                     VILSMKEFERLQNAMQLLENIYKNQKA"
     gene            complement(3148..4188)
                     /locus_tag="SF008_000729"
     CDS             complement(3148..4188)
                     /locus_tag="SF008_000729"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEG8233015.1"
                     /translation="MKFAILFGGNSYEHEISIVSAVVLKKVINQNLEFIFCDEERRFY
                     HIPSEKMNSKTFSTKAYKKEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDG
                     KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKEKLS
                     FPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI
                     NDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPLF
                     KGALIRCDFFILDNEIYLNEINPNPGSLANYLFKDFSTTLNALADQISLEKMIKISYN
                     FLHSINGQKGKL"
     gene            complement(4198..4749)
                     /gene="ruvA"
                     /locus_tag="SF008_000730"
     CDS             complement(4198..4749)
                     /gene="ruvA"
                     /locus_tag="SF008_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEG8233016.1"
                     /translation="MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKII
                     SVLASAQATSTSELIKEALKKLG"
     gene            complement(4725..6584)
                     /locus_tag="SF008_000731"
     CDS             complement(4725..6584)
                     /locus_tag="SF008_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEG8233017.1"
                     /translation="MALDEKIIAYTENPARELLSVTSRTNLSLNELDFSLLAFSTQYR
                     FGDLEWEKISEKELTLFDKDEIFLKNDLQIKQEYKIEIFHGINQSKASQAVKLVANKN
                     LTKIIAQIDFTNLDFHEKLALELLQNIYKKMLKLKFLIGIRIFDFKKNLMSFCNQHKN
                     TPLNKTIQITVAQGIDPIESQDESLILTYKEKTKNYTIDEKRSGIIIVDENEVVLKHA
                     KFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAFKQVEQDGYTEYIALKKGYVVQDGE
                     KFDIANELDFNGVDFKNIGIIRAGLDKNVKINIKFLSEVKDAVNSGVGIECEELNVVG
                     SVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKTHRGFAEAEILNIDLLEGGTIKAKE
                     VRIKKSLGGNIQADKIYIENLESNNSCVFFENTTIERINGDNNKFHAKIKTLDKNYDE
                     EFAILGEQISKLNHKINKIRQYILSSKNGILSVEKKITELKNQGQNVPVQYEKALKDF
                     SLQNLELNKLQNEEKELLERKKSLQLELINLQKMLFEATFINKSGKWTDMNEIKFSLL
                     EPKEDIFYSSFVNESAKFIGIKKVIQNNQESIEIHKKLDYEEKDIAWLSASKE"
     gene            6688..8139
                     /gene="murJ"
                     /locus_tag="SF008_000732"
     CDS             6688..8139
                     /gene="murJ"
                     /locus_tag="SF008_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HEG8233018.1"
                     /translation="MKSLVFKNFIINALGILFSRILGLARDVLIALFLGAGLYSDIFF
                     VALKMPAFFRRIFAEGAFGQSFLPNFVKAKKKGAFCVSVMMQFSLIVFLFCLLVSFFS
                     SFFTKLFAFGFNADTIALAAPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAAL
                     FNLSIVIAAFFVDKNAPQNTLYYFSYATVLSGVAQLILHLLVLKNNPVIRAMALSIKF
                     KKAKAKLQGFYGNFFHGVLGSSATQFSSLLDTTIASFLMSGSISYLYYANRVFQLPLA
                     LFAIALTQVSFPKILKHLKSDQENLALKFMQRALALLSILLIASSIVGSVFALEISKL
                     LFERGNFTHEDSVITAYVLIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAWIAVKSLII
                     SALCSMAFIFLIKDESLKVIAVALSSSISAFYLLGANIKEFGFKKFFALISIKICLLV
                     IVALIIFTILLILVKPYILSFFIGIFTSFKGVF"
     gene            8139..9527
                     /locus_tag="SF008_000733"
     CDS             8139..9527
                     /locus_tag="SF008_000733"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEG8233019.1"
                     /translation="MRLLDSVTKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLAQGNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVL
                     DPDFKPRATHYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENIS
                     RLSNEVQKRNESDFVLWKFDENFYENEFGKGRPGWHTECVAMIDSIFENTLDIHAGGI
                     DLLFPHHENEAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMG
                     EALRFYLLSSHYRSHFNYSLLDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKS
                     EIAKQILEILNDDLNVSKALALLDDFINNANLELDKESKNKILKQNIKEALSELAKIF
                     GFGFMDTTLYFQWGVSKEEREEIEKLILERTEAKKSKDFNTADTIREQLSSKKITLLD
                     TPNGTIWEKINA"
     gene            9520..11262
                     /locus_tag="SF008_000734"
     CDS             9520..11262
                     /locus_tag="SF008_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8233020.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFSKHNDILCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANAYEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKAIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            11294..12352
                     /locus_tag="SF008_000735"
     CDS             11294..12352
                     /locus_tag="SF008_000735"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HEG8233021.1"
                     /translation="MAYEMIKPLLFKLNPEYTHALVECSLRALSASFPGALSFLAHKY
                     IVDNESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DYFTLFRDFKDLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKITSKPILIKIAP
                     DMKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VAKILFGKTLLIASGGIDSADIAYERIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGFLHISEAVGVNLK"
     gene            12349..13599
                     /locus_tag="SF008_000736"
     CDS             12349..13599
                     /locus_tag="SF008_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEG8233022.1"
                     /translation="MIAYEKIQLKNKLEVYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMANLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKKHFEKIKNTKTM
                     PKIHTKEPKQDGAKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILIDKLNLINDYYAYVNDCIDENLFIFICNCNPNVNAEKVEKELLKIIDKLKMGK
                     ISQKDLQRVKNNVKSDFIFSFNNASAVANIYGSYLARGDINPLLNYEKDIQNLELKDL
                     ISCAKKYFIQENSTTVILRKDSNG"
     gene            13592..14488
                     /locus_tag="SF008_000737"
     CDS             13592..14488
                     /locus_tag="SF008_000737"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEG8233023.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKETKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     STLTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYLAGLIESLEFRLPLC
                     SPSKENFAKIEEVMKKYKIKGF"
     gene            14488..15267
                     /locus_tag="SF008_000738"
     CDS             14488..15267
                     /locus_tag="SF008_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HEG8233024.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGANIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDVDFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
     gene            complement(15308..>15594)
                     /locus_tag="SF008_000739"
     CDS             complement(15308..>15594)
                     /locus_tag="SF008_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233025.1"
                     /translation="LYAFIFLNLFALFGLFLGNKKKNQFNDKKFYKICPCKKMAENGS
                     LSTICIYSAVGGFFYSVLSIGFIGFGNWTLNFIFLLALLSVFLGWKLKLD"
BASE COUNT         5297 a         2041 c         2599 g         5657 t
ORIGIN      
        1 attagtgaat tatcatctga taaaactata ggtattatgc cgaaaaatta tgataagcta
       61 acaataacaa actattataa tacacaagag caatataatg aagcagaaca attaggaatg
      121 tttgggcata ttaatatagg cttacaacca ttaaatttca ctccgcaaag tatgcaaact
      181 caaaatttag ataaagacac tgcaatagat acttttaatc ctgatatgtc agtttatcca
      241 caaaatgaag atggaagtta ctctaaagag gctttgttta tgagtttttt aaaatcaacg
      301 ggtgtatcgc caagagaagg tagtgcaaca ttaaatccta tagctaagtc ttatgctgaa
      361 gctatggcca aagaaagctt tgatggatca ttaacttcct tagatgacat catgacaggc
      421 aaagttgatt ttgcaagttt attaaaaggt tatgcacaag atggctggct tgatgcagat
      481 atatatgcaa tggaaaaagg ggttgcttgg caaaatacaa gtataggtta tggtggagct
      541 tggtttgata gagaatttaa tcaagcaaaa gctaatggct ggaaagcaag taatgaaagt
      601 ataaattctt ttgtaaataa tataatggat agacttaata atcttatagg gcagactagg
      661 gtttaaagaa gtatttgcac gaagtcaaat taaaaatgat gacatttgca aatacttagc
      721 aaatcacata aagctaggtg catcgtttga aaagagtatt aaatctccgt gttttgtttc
      781 tttagctaga gtttgaacta gctgactctt ttctttaagt ataatggttt ttatttttaa
      841 ctcttttttg aaaatttcag cattgatttg tgcactaatg atagcaagat caaaacactc
      901 attgatgatt ttagcaagtt ttatattttc ttcttcgctt acttccacta taccaggact
      961 tactaaaact ttgcgtcctt tatagctttt acaaagttta tagcttgtgc tcataccttt
     1021 aaaatttcca ttaaaaccat catctatgat aaatttaggc tctcttgaaa gcacttgcaa
     1081 gcgatgttct acggagttta tatttaaaac ttgcttttga attttttcta gttttatgcc
     1141 aagataatga gcacaaagta tacaaacaca aagattttgc gcattaaaat cccctaaaat
     1201 ttgactttta aaatcatagg atttattttc tatatcgatt ttaaattcta aaccttcaag
     1261 acttgaatga ataagactta atttatcatc ataaaggttg atgagcttat cttcttcttt
     1321 ttgggtgcta gagtgtaaaa aagccttttc tagtcttttg gaatttaagg cttcaagttt
     1381 ggttgagcgg atattttcaa cacttttaaa atactctaaa tgtgcattgc ctatctctcc
     1441 tactatgctg atgtgaggtt gtaaaaaacg cgtgatttca tcaatatcgc ctttaagtct
     1501 agcacctgct tcagctatgt aaatttgagt atcttggctt aaattggtgt tgatatcagc
     1561 aactatgcct agcaaggtat tgacagagcg tggtgttttg tagcttttaa agtcatcttt
     1621 taaaagttcg tataaaaaat ttttaatact tgtttttcca aaacttgcgg taatgagtat
     1681 gatttttaaa ttttcattgg ctcttagttt ggctttggct tgttttttat aatataaatt
     1741 tgtaaaaaac tcataaattt taagactaaa taaagcaaaa ggaaggctaa aaagattaaa
     1801 aagaaaagaa aaacgcaaag caaggatagc aaaaatagca ttataaacaa aaacaaaaac
     1861 aaaaaaccat ttaaccttac ttgtaaaaac aagcttttta tctatacctt tgttccaaaa
     1921 atacaaaatc ggagtatgga tcaatgcaaa atatgccaaa gagtataaag gaaaagctaa
     1981 gaataaaaaa taaggaataa ataaaaaata caaatgccac aaaggtttat gataatgaaa
     2041 aaacacgcgt ttaaatttat aagaatacca ttgtaaagca ctcataagat aaaaagctat
     2101 acaaaaatta aaaaataaag aattaataaa ataaagagta ttgacaagca tttaaatttc
     2161 cttaattttt tgagctatga aagcagaatg ttttaaaaag aaaaaatgat ttccctctaa
     2221 aggataaaaa gtgctatttt ttaaaaattg atgcattttt tcaccacaat acaaaggcgt
     2281 agattcatcg ctttcccccc aaaaaaccaa gcttttagcc ttttgcttgg caaaaatttc
     2341 actaaaatcc tcatcaacaa cccttttaaa ggtttcatac atcataggac taagatttgc
     2401 tccatcttta ctagcaaaat agcgataaaa ttttcccaaa ccaaagagtt ttaaaatttt
     2461 aaaaatacgg attttaaaac gcacttttag agatttttta gccaaaattc ctgcacttga
     2521 aagtaagatt agagtgtctt tttcttttgc gagtagggta cttacttttc cgccaaaaga
     2581 atgccccatg aaaaaacaga cattgagttt tttttgtttt aaaaaaagtt ctgtgatatt
     2641 ggcgtaatct tgagtgttta aaatttcttc cacgcttgaa tttccaaaac ccgccaaatc
     2701 catataaatt tgacaaaaat cttttaaaaa aggacaaaaa ctttgcttca taagttcttt
     2761 attggctccc cagccgtgta agataagtat ttgcggtaag gaaagatcac ctaaaatttc
     2821 ataagaaatt tgataagttt tgtttttata agaaagttga gtctgagcca ttttaagcct
     2881 tttgattttt gtagatattt tctaaaagtt gcatggcgtt ttgtaagcgt tcaaattcct
     2941 tcatactaag tattacagct tcaaatttgt tattttttaa aataactatt tttccacttt
     3001 cgcttttttt gagtttttcc ataatggggc taaaatttct taccacttcg gtggcagtgt
     3061 aaatttcatc ttgtttaaaa gagagcattt ttcttcctaa aatacgctaa attttatgta
     3121 taatttagcg tattttgact taaaagctta taattttcct ttttgtccgt tgatagagtg
     3181 aaggaagttg tagctgattt ttatcatttt ttcaagtgaa atttgatcag ctaaagcgtt
     3241 taaagtagta ctaaaatctt taaaaagata attagccaaa gaaccaggat ttgggttgat
     3301 ttcatttaaa tatatttcat tatccagtat aaaaaaatcg cagcgtatta aagcaccttt
     3361 aaacaaagga ttgtagatct ttttaaaact atctttgagt ttttctttta attcttcgct
     3421 taaatttgct tctataagct cattgtgtcc tgaaaagcta agatattttt gttcaaagtc
     3481 taaaaattct tttttctttg gctcttctat gatggaaaaa acaaactcat cattgatcat
     3541 acatcctgca agattgtatt ctttgatatt gtttttaaat tcttccacta caagatcatt
     3601 atcaaattca aaacctacat ctttggcgta ttctaaatct ttttcatctt tcactatact
     3661 aatacctatg ctacttccaa gtcttgcagg tttgataatg caaggaaaac taagcttttc
     3721 tttagagttt tgattttttc ttagcatggt ataatcaagt gtttttactc caacgctttt
     3781 tgcataaagt ttagtaagtt ccttgttaaa agataatacg ctggcttcaa gcctaggtcc
     3841 tataaattta atagaataaa actcaaataa agccgcaatt tttccatctt ctccatctct
     3901 accatggata agattgatca cgcactcgca ctctagttta ttttctttta aaaagccttt
     3961 gctaaaaaaa cctccttgtt tgatgaaaag ttctttttct tttttataag ctttggtgct
     4021 aaaagtttta gaattcattt tttcacttgg gatatgataa aatcttcttt cttcatcaca
     4081 aaaaataaat tctaaatttt gattgataac ttttttaagt actacagcac ttactatact
     4141 gatctcatgt tcataagaat ttccgccaaa aagtattgca aatttcattt tattccttta
     4201 tcctagtttt ttaagagctt ctttgatgag ttcgcttgtg cttgttgctt gagcacttgc
     4261 taaaacactt atgatttttt cttgtttaaa gcctagagta agaagtgcgg ctaaggcttc
     4321 gcttttatca tcgcttacat tttcaagttt ggtttttgtg tcagaaagtt ctactataat
     4381 gcgttttgca ctttttggac ctatgccagg tactttttta agcacgcttt catcgcccaa
     4441 acttaacgct ttgtaaaaag aatttacatc aagactagag cataccgcca tagcagtatt
     4501 tgcacccact ccattgactt ttaaaagcat ttcaaacatt ttttgttcat ctttatctaa
     4561 aaagccataa aatttattag aatcttcttt gatgatttga gtgataaaaa actcatgctt
     4621 ttcttgagtt tgaattttag cagaacaaaa aagcgaaata aatatcccat agcttaaacc
     4681 actagcgcat ttaacaatga taaaagtagg ttcttttttt gtgattattc cttcgatgcc
     4741 gacaaccatg ctatatcctt ttcttcataa tctaattttt tatgtatttc tatactttct
     4801 tggttgtttt gtatgacttt tttaatgcct ataaatttag cactttcatt aacaaatgaa
     4861 gagtaaaaaa tatcttcttt aggctctaga agtgaaaatt tgatttcatt catatcagtc
     4921 catttgccac ttttatttat aaaagttgct tcaaaaagca ttttttgcaa attgattaat
     4981 tctaattgta aagatttttt gcgttcaaga agttcttttt cttcattttg tagtttattt
     5041 aattcaagat tttgcaaaga gaaatctttt agggcttttt cgtattgtac aggaacattt
     5101 tgaccttgat ttttaagttc tgttatcttt ttttcaacgc ttaaaattcc atttttgctt
     5161 gataaaatgt attgtcttat tttatttatt ttatgattta acttagaaat ttgctctcct
     5221 aaaatcgcaa attcttcatc ataattttta tcaagagttt taattttagc atgaaattta
     5281 ttgttatccc cgttaatgcg ttctattgtg gtgttttcaa aaaacacaca agaattatta
     5341 ctttctaaat tttctatata gattttatca gcttgtatat ttccacctaa gcttttttta
     5401 attctcactt ctttagcttt gattgttcca ccttcgagca aatctatatt taaaatttcg
     5461 gcttctgcaa atcctctatg agtttttata taggcttgtt tggcttgaat tttggcttta
     5521 gagtgtgtag tgccttcaat tttcatttta gtggcattaa gttgagtgtt gcttcctacg
     5581 cttccgacta catttaattc ttcacattct atcccaacgc cagaatttac agcatctttt
     5641 acttctgaaa gaaattttat attgattttg acatttttgt ctagtccagc tcttataatc
     5701 cctatatttt taaaatctac tccattaaaa tctagttcat tggcaatatc aaatttttca
     5761 ccatcttgta ctacataacc tttttttaaa gctatatatt ctgtgtatcc atcttgctct
     5821 acttgtttaa aagctgaaga acaagaaaat ttaactttat tttcatttgc ggctaaaact
     5881 tttaaggtgt gtaaatttaa gtcttttcct tctttacctt gtttaaattt ggcgtgtttt
     5941 aaaacaactt cattttcatc aacaataata atacctgagc gtttttcatc gatagtgtag
     6001 tttttggttt tttctttata agtcaagatc agggattcat cttgactttc tataggatca
     6061 ataccttgtg caacggtgat ttgtatagtt ttatttaaag gagtgttttt atgttggttg
     6121 caaaaagaca ttaaattttt cttaaaatca aaaatgcgga tacctattaa aaatttaagt
     6181 ttcaacatct ttttataaat attttgcaaa agttctagtg ctagtttttc atgaaagtct
     6241 aaatttgtaa aatcaatttg agcaattatt ttggttaaat ttttattcgc aactagtttg
     6301 actgcttgag atgctttgct ttggtttata ccgtggaaaa tttctatttt gtattcttgc
     6361 ttgatttgaa gatcattttt taaaaaaatt tcatctttat caaaaagagt taattctttt
     6421 tcagagattt tttcccattc taaatctcca aagcgatatt gtgtagaaaa tgccaataaa
     6481 ctaaaatcaa gctcatttaa gctaaggttt gttcgtgaag ttacgcttaa aagctctcga
     6541 gctggatttt ctgtataggc aataattttt tcatccaaag ccaaaacttt ccccttgtaa
     6601 aaaattaaga atgtaattat agtcaatttt taatcaattt tagttaaaat agttctcttt
     6661 atattttgaa atttatgaaa aaatttaatg aagagtttag tatttaaaaa ttttattatc
     6721 aatgctttag gaattttatt ttcaagaatt ttagggcttg ctagagatgt tttaatagcg
     6781 ctttttttag gagcagggct ttatagtgat attttttttg tggctttaaa aatgcctgct
     6841 ttttttagaa gaatttttgc agaaggagct tttggacaaa gttttttgcc taattttgta
     6901 aaagcgaaaa aaaaaggagc tttttgcgtt agtgtaatga tgcaatttag ccttatagtt
     6961 tttttatttt gtcttttggt aagttttttc tcctcttttt ttactaagct ttttgctttt
     7021 gggtttaacg cagatactat agctttagca gctcctttgg tggcgattaa tttttggtat
     7081 ttgtttttta tttttttagt tactttttta ggagctattt taaattatag acaaaaattt
     7141 ttcattacct ctttttctgc ggcattattt aacttaagta ttgttatagc tgcctttttt
     7201 gtggataaaa atgcaccgca aaatacactt tattattttt cttatgcaac ggttttaagt
     7261 ggggtagcac agcttatttt acatttgctt gttttaaaaa acaatcctgt aatccgtgct
     7321 atggctttaa gtataaaatt taaaaaagct aaggcgaaat tacaaggttt ttatggcaat
     7381 ttttttcatg gagttttagg ttcttctgcg actcaattta gctcattgct tgatacaacc
     7441 atagctagtt ttttaatgag cgggagtatt tcttatcttt attatgcaaa tcgtgtcttc
     7501 caactccccc ttgcgctttt tgctatcgct ttaactcaag tttcttttcc aaaaatttta
     7561 aaacatttaa aaagtgatca agaaaattta gccttaaaat ttatgcaaag agcattagcg
     7621 cttttaagca ttttgcttat tgcttctagt attgtaggtt ctgtatttgc tttggaaatt
     7681 tcaaagcttt tatttgaaag aggaaatttc actcacgaag atagtgtgat tacggcttat
     7741 gttttgattg cttatcttat agggctttta ccttttggtt tgcaaaagct tttttctttg
     7801 tggctttatg caaaatttaa acaaaaaaca gcagcttgga tcgcggtaaa atctttaatt
     7861 atcagtgctt tatgttctat ggcttttata tttttgatta aagatgaaag tttaaaggtt
     7921 attgcagtag cactttcaag ctctattagt gctttttatt tgcttggagc taatatcaaa
     7981 gaatttggtt ttaagaaatt ttttgcttta atatctatta aaatttgctt attggttata
     8041 gttgctttga ttatttttac aatcttactt attttggtta aaccttatat tttaagtttt
     8101 tttataggaa tttttacaag ttttaaagga gttttttaat gagattatta gacagtgtaa
     8161 caaaagagaa aataaaactt gataaaaaag atattagtat ttatttatgc gggcctacgg
     8221 tttatgatga tgcacattta ggacatgcaa gaagtagtgt ttgttttgat cttttgcgta
     8281 gggttttact tgctcagggc aatagggtaa aatttgctag aaattataca gatattgatg
     8341 ataagatttt gaaaaaaatg gctcaaagtg gtcaaacttt agaggaaatt acggaatttt
     8401 atattaaaag ttatgaagag gatatgaggg ttttaaatgt attagatcct gattttaaac
     8461 ctcgtgcaac gcattatata acagctatgc ttgatttgat taaaaagctt gctaaggatg
     8521 ggtttgttta tactctagaa gatggaattt attttgatac aagtaaagat gaaaaatatt
     8581 taagcctatc aaatcgcaat ttagaagaaa atatctctcg tctaagtaat gaagtgcaaa
     8641 aaagaaatga aagcgatttt gtgctttgga aatttgatga aaatttttac gaaaatgaat
     8701 ttggcaaagg gcgcccaggt tggcatactg aatgtgttgc tatgattgat tctatttttg
     8761 aaaatactct tgatatacat gctggaggga tagatttgct ttttcctcat catgaaaatg
     8821 aagctgcgca atgtcgttgt ggatgtaaga gaaaattagc aaatatttgg cttcataatg
     8881 gttttgtaaa aatcgatggc gaaaaaatga gtaaaagttt aaataatagt tttttcataa
     8941 aagatgcttt aaaagaattt atgggcgaag ctttaagatt ttatcttttg agttctcatt
     9001 atagatctca ttttaattat tctttattgg atttagaaaa tgctaaaaaa cgtttagata
     9061 aattttatcg ccttaaaaaa agattggatt taggtgaaat ttctgatttt gatgttttaa
     9121 atgatattga aataaaaagc gaaattgcta agcaaatttt agagatttta aatgatgatt
     9181 taaacgtttc taaagcctta gctcttttag atgattttat aaataatgca aatttagagt
     9241 tggataaaga aagcaaaaat aaaattttaa aacaaaatat caaagaagct ttaagtgagc
     9301 tagctaaaat ttttggcttt ggttttatgg atacaacttt atattttcaa tggggtgtaa
     9361 gcaaagaaga acgagaagag attgaaaagt taattttaga aagaactgag gctaagaaaa
     9421 gcaaagattt taacacagct gatacaataa gggaacaact aagtagtaaa aaaatcactc
     9481 ttttagatac tccaaatgga acaatttggg agaaaataaa tgcataatga gatgaattta
     9541 aaagaggttt taatacgctt taagcccttt tataaaagat attggaagca atttgctata
     9601 gctatttttg gtatgatttt agcaagcgga ggaactgctg gaagttttta tgctttagag
     9661 cctattttaa attatatttt cgttgaaaaa aatgaagctt tactttatac agtgcctttt
     9721 ttgctagtat tgatgtattt ttttaaaaat cttggaactt atctacaaag tttttatgtt
     9781 tcctttatag gaacagatat gttaagagta ttgcgtgcta gggttttaaa aaatgtttta
     9841 cgcttggata tggatttttt taaacgctat agaagcggag agcttgtaag tcgttgtact
     9901 aatgatatta atgcacttca aagtatagta tcaaatatta ttcctgattt ttttagagag
     9961 cttttaactg ctataggact gcttgcggta gtcttgtatc aaagtcctac tttggctttt
    10021 tttgctttag tgattttgcc tttagctatt tttcctttgg tatggtttgc taaaaaactt
    10081 aaaaaatatg caagaaatat acaagaaaca aattcggatt tactttctta tttgggtgaa
    10141 attttttcaa atattgaatt gatcaaagct aatgataatg aaaaaaaaga aagtgataaa
    10201 ttttctaagc ataatgatat tttatgtaaa ttaaacctaa aatccgcacg tattgatgca
    10261 cttacaagtc ctttaatgga tatgatgggt tctgttgggg ttgctgtggt gattattgta
    10321 gggggtagag aggttatcaa tggttctatg agtgtgggaa gttttatcag ttttgtttcg
    10381 gcactttttg cgatatatac tcctttaaag cgtctttcgt ctttatatgg aaaacttcaa
    10441 ggtgctgttg cggcaagtga aagaactttt tatttattgg atttagaacc tcaaattaaa
    10501 ggtggaagca aagaattaaa aaacattgaa aaaattagct ttgaaaatgt tgaatttgct
    10561 tatgaaaacc cgcataaaag tgttttaaaa ggcgtaaatt ttgattttgt taaagggcaa
    10621 atgcttgctc ttgtagggac aagtgggggt ggcaaatctt ctattattaa tcttttgatg
    10681 tatttttatg aaaagcaaaa aggtaaaatt ttactcaatc aagaagatat tagcactttt
    10741 accatagaaa gcttacatgc taaaatagga cttgtaacgc aaaatattta tctttttaat
    10801 gatagttttg ctgcaaatat tgcttatagc gaagagttag aagaagaaaa agtcatccaa
    10861 gctttaaaat tggccaatgc ctatgaattt gttaaagaaa tgggcgggat ttgggctgaa
    10921 gtgaaagaac atggtaaaaa cttaagtgga ggacaaaaac aaagaatagc aatcgctaga
    10981 gctttatata aaaatcctga tgtgcttatt tttgatgaag caacttcagc tttggataat
    11041 gaaagtgaaa aagcaatagt taaaactata gaaaatttaa aacaagacag attgatttta
    11101 gtggttgcac atcgtttaag cactatagaa aatgcagata aaatagtagt attggataag
    11161 ggtaaggtat tggcaatagg taaagatgaa gagcttttgc aaacttgttc tttgtatcaa
    11221 aaatttaaaa gcaaagaaaa aacaaagcct agctttagtt aattttagtt agaattttaa
    11281 aaaggattaa aaaatggctt atgaaatgat aaaaccttta ctttttaagt taaaccctga
    11341 gtatacacat gctttggttg aatgtagctt aagggcttta agtgctagtt ttccaggagc
    11401 tttaagtttt ttagcacaca aatatatagt tgataatgag agtttaaggc aaaatttact
    11461 tggacttgat tttaataacc ctgtgggttt agcaggaggc tttgataaaa atgctactat
    11521 gataagacct ttgagtgctt taggatttgg ctttttagaa gtgggaactt ttactccaaa
    11581 acctcaagaa ggcaatgaaa aaccacgtct atttagactt gtaaaacaag aaagtataca
    11641 aaatgctatg ggttttaaca acgaaggtgc tgaaaagatt gctttaagac ttgcaaaaac
    11701 ttatcctttt gttttaccct taggagtaaa tatagggaaa aataaaatca ctccaaatga
    11761 taaagccttg gaggattatt ttactttgtt tagagatttt aaggatttat gtgattattt
    11821 tatcgttaat atctcatctc ctaatactaa aaatttaaga gagttacaaa atgatgattt
    11881 tttaaatacc ttgcttgaag aagccaaaaa aattacttct aagcctattt tgataaaaat
    11941 tgctcctgat atgaaaatag atgatgcttt aaatttatgt gaaaatgcta ttaaaaaagg
    12001 tgcagatggg tttatattag ccaatactag tgttgattat agcttactag ataataatcg
    12061 tacttttggt ggtattagtg gaaggttgat tacagaaaaa agtggtattt ttttcaaaga
    12121 agtagctaaa attctttttg gcaaaacctt gcttattgca agtggaggga ttgatagtgc
    12181 tgatattgct tatgagcgta ttaaaaatgg ggctaatttg gtgcaagttt atacagcttt
    12241 gatttttaaa ggtccttctt tggtaaaaaa tatcaatcaa aatcttatag agcttttaag
    12301 aaaagatggt tttttacaca ttagcgaagc tgttggggta aatttaaaat gattgcttat
    12361 gaaaaaattc aattaaaaaa caagcttgaa gtttatgctt tgcctgtaaa taaaaatagc
    12421 gatgtgatta gcgttgatat tttttataaa gtaggttcaa gaaatgagat catgggaaaa
    12481 agcggcatag ctcatatgct agaacattta aattttaaaa gtactaaaaa tttaaaagct
    12541 ggcgaatttg atgagattgt taagggtttt ggtggtgtgg ataatgcaag cacaggtttt
    12601 gactatactc attattatat taaatgtgcg aagaaaaatt tagataaagc tttggaactt
    12661 tttgcagaac ttatggcgaa tttaaattta aaagatgaag aatttcagcc tgaaagagca
    12721 gtggttttag aagagcgtag atggagaaca gataataatc ctttgggata tctttatttt
    12781 agacttttta atcatgcatt tatgtatcat ccttatcatt ggactcctat aggttttttt
    12841 aaagatatag aaaattggag tattgaagat attaaagaat ttcacagtat ttactatcaa
    12901 cctaaaaatg cgattttact tgtaagtggc gatatagaaa gtaaagaagt ttttgagctt
    12961 tcaaaaaaac attttgaaaa gattaaaaat actaagacta tgcctaaaat tcacacaaaa
    13021 gagcctaagc aagatggagc aaaaagaata tatttgcata aaaactcaga tactgaacta
    13081 ttagcccttg cttataaaat tccaaatttc aagcacaaag atatacctgc tttaaatgct
    13141 ttatccgagc ttttaggaag tgggaaaagt tctttaatga gtgaaatttt gattgataaa
    13201 ttaaatttaa tcaatgatta ttatgcttat gttaatgatt gtatagatga aaatttattt
    13261 atttttattt gtaattgtaa ccccaatgtt aatgcagaaa aagtagaaaa agagctttta
    13321 aaaatcattg ataagcttaa aatgggtaaa atttctcaaa aagatttgca aagagtgaaa
    13381 aataatgtca aaagcgattt tattttctca tttaacaatg ctagtgcagt ggcaaatatt
    13441 tatggttcat atctagcaag aggagatatc aatcctttgt taaattatga gaaagatata
    13501 caaaatttgg aattaaaaga tttgatttct tgtgctaaaa aatattttat tcaagaaaat
    13561 tcaactacgg taattctaag aaaggattca aatggataaa aatattatta ttggggcgat
    13621 gacggctctt attacaccat ttaaaaatgg aaaagttgat gagcaaagtt atgcaagatt
    13681 gattaaaaga caaatagaaa atggcatcga tgcagtagtt ccagtaggaa caacaggaga
    13741 aagtgcaact ttaacccatg aagaacatag aacttgcata gaaatagccg ttgagacttg
    13801 caaagaaact aaagttaagg ttttagcagg tgcgggaagt aatgcaactc atgaggcagt
    13861 gggtttggct aaatttgcta aagagcatgg tgctgatggg attttaagtg tggcaccgta
    13921 ttataataaa cctacacaac aaggacttta tgagcattat aaggctattg cacaaagtgt
    13981 agatattcct gtgcttttat ataatgttcc aggaagaaca ggttgtgaaa tttcaacgga
    14041 tactattatc aagcttttta gagattgtga aaatatttat ggagtaaaag aagcgagtgg
    14101 aaatatcgat aagtgtgtgg atttgcttgc gcacgaacct agaatgatgc ttatttcagg
    14161 ggaagatgcg atcaattatc ctatactttc gaatggcgga aagggagtga tttcagtaac
    14221 ttcaaattta ttacccgata tgattagcac tttaactcat tttgctttag atgaaaatta
    14281 taaagaagct aaaaaaatca atgatgagct ttataatatc aataaaattt tattttgcga
    14341 aagtaatcct attcctatta aaacggctat gtatttagct ggattgatag aaagtttgga
    14401 atttagactt cctctttgtt ctccaagtaa ggaaaatttt gctaaaattg aagaagtgat
    14461 gaaaaaatat aagatcaaag gattttaatg aatacagaat ttcaaggaaa aactttagtg
    14521 attagcggtg gaactcgcgg gataggcaaa gctatagttt atgaatttgc taaagtgggt
    14581 gcaaatatag cttttactta taattctaat gcgcaaattg ctgatgaaat ggttcaagat
    14641 ttggagaaaa attataaaat caaagctaga gcttatgagt ttaatatttt agaacctgaa
    14701 acttataaag aactttttga aaaaattgat gtggattttg atagagtgga ttattttatc
    14761 tcaaatgcta tcatttcagg acgtgcggtt gtaggtggct atactaaatt tatgaagtta
    14821 aaaccaaagg gaattaataa catttttaca gccacagtaa atgcttttgt tgtgggcgca
    14881 caagaagcag ctaaaaggat ggaaaaagta gggggtggaa gcattatttc tatctcatct
    14941 acaggaaatt tagtgtatat agaaaattat tcaggtcatg gtacagcaaa agccgctgta
    15001 gaagctatgg caagatatgc ggctactgaa cttggagaaa aaaatatccg tgtaaatgtc
    15061 gtaagtggtg ggcctattga aactgatgct ttaagagctt ttacaaatta tgaagaagta
    15121 aaacaggcta ctataaattt aagcccttta aatcgcatgg ggcagcctga agatttggct
    15181 ggagcatgtc tttttctttg ctcaagtaag gcaagttggg tgacaggaca tactttcatc
    15241 gttgatggtg gtacaacttt taaataaaaa ttaagaaaaa tcaatggatt tttcttaaaa
    15301 atatttttca atcaagtttt aatttccacc ctaaaaaaac acttaataat gcaagtaaaa
    15361 aaataaaatt taaagtccaa ttaccaaaac ctataaaacc tatagataat acgctgtaaa
    15421 aaaatcctcc tacagctgaa taaatacaaa tcgtacttaa agatccattt tctgccattt
    15481 ttttacatgg gcagatttta taaaattttt tatcattaaa ttgatttttc tttttatttc
    15541 ccaaaaataa accaaaaagg gcaaaaagat ttaaaaaaat aaaagcatat aata
//
LOCUS       DARGEY010000027        15520 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.027, whole genome shotgun sequence.
ACCESSION   DARGEY010000027 DARGEY010000000
VERSION     DARGEY010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15520
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.027"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..275)
                     /locus_tag="SF008_000740"
     CDS             complement(<1..275)
                     /locus_tag="SF008_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEG8233026.1"
                     /translation="MKDFFKDQFFKALEKNTIFSRADVQGNLIFVSDKLCQISGYSKK
                     ELIGKKHSIFKHPDVEECYIEELLKKLSYKKPYQVIFKNIDKLGKTF"
     gene            complement(272..931)
                     /locus_tag="SF008_000741"
     CDS             complement(272..931)
                     /locus_tag="SF008_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEG8233027.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYNLFRIFAYIVLGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNML
                     SFIENNVFFDSFVKKIIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIANAMSKQNIF
                     EGMLVMMIFGISTLPAMLFFSKISQFFSDFLKNLFNYLSYGVIVCYGINLAYIGFKAF
                     Q"
     gene            complement(928..2046)
                     /gene="carA"
                     /locus_tag="SF008_000742"
     CDS             complement(928..2046)
                     /gene="carA"
                     /locus_tag="SF008_000742"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEG8233028.1"
                     /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVS
                     TKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNV
                     KADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEIKKLAEAKIPMLGICLGHQLLSN
                     AFGYETYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            complement(2046..2597)
                     /locus_tag="SF008_000743"
     CDS             complement(2046..2597)
                     /locus_tag="SF008_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HEG8233029.1"
                     /translation="MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEK
                     DILNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHL
                     AHQILEELVENDYINFIVSENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIP
                     GSEEYDLIFEKLYQEELRKKGMF"
     gene            complement(2690..3208)
                     /locus_tag="SF008_000744"
     CDS             complement(2690..3208)
                     /locus_tag="SF008_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HEG8233030.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEKQQKILNSIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
     gene            complement(3201..3629)
                     /locus_tag="SF008_000745"
     CDS             complement(3201..3629)
                     /locus_tag="SF008_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FliJ family protein"
                     /protein_id="HEG8233031.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEHEKAYELSRQEC
                     ESLGVLPKSGSIAELRSNLSMAQVGREALARAREKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKELAKAEEKFLDEIAISRFFKGEKDD"
     gene            complement(3626..4876)
                     /locus_tag="SF008_000746"
     CDS             complement(3626..4876)
                     /locus_tag="SF008_000746"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEG8233032.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKHAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALIK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGALTGLGLNPKEAGNIIGIVKAYTTRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            complement(4904..5001)
                     /locus_tag="SF008_000747"
     tRNA            complement(4904..5001)
                     /locus_tag="SF008_000747"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4965..4967),aa:Sec,seq:tca)
     gene            5141..6349
                     /gene="yedE"
                     /locus_tag="SF008_000748"
     CDS             5141..6349
                     /gene="yedE"
                     /locus_tag="SF008_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HEG8233033.1"
                     /translation="MNSFKQKYLINFWDNSRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKSKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGMIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWTYRAFEGQSHFMIV
                     GIANIIGTMILALSYDFLPKALKEGVKINLLTEFGNLNGFFINLVLFILMFAFVVFYK
                     KHFFKNQLKG"
     gene            6353..6580
                     /gene="yedF"
                     /locus_tag="SF008_000749"
     CDS             6353..6580
                     /gene="yedF"
                     /locus_tag="SF008_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEG8233034.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLKSGEILEVLCDCPQSI
                     NSIPQDAKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(6596..8065)
                     /gene="putP"
                     /locus_tag="SF008_000750"
     CDS             complement(6596..8065)
                     /gene="putP"
                     /locus_tag="SF008_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HEG8233035.1"
                     /translation="MEVVQINTPIAVMFVAYALLMLYIGFYFYKQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGVISIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHVVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLAASAVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(8083..11571)
                     /locus_tag="SF008_000751"
     CDS             complement(8083..11571)
                     /locus_tag="SF008_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HEG8233036.1"
                     /translation="MIQKALALAEELQGQIEANISNSEKEFHAKMQKLLNNPKNKVML
                     IELLDRSFRCKDKNASFELIEYTLSKYGIADFFSTFEKFLLFSFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANPSVLEPHIKKRKEQDKITLNVNLIGEEVLGEAESKYRMQKY
                     EEALKSSYITYISIKITTIFSQINIIDFNYSKEEVVKRLDYLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVAKFDIKAGIVLQAYIPDSYKYLKKLFAFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQRGWELPTFYKKIDTDSNYNKMLDFILEGDNYKYIN
                     IGIASHNIFEIAYVYTRISEVGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDKNWNIQKELFLKSLEGIKTLDNTT
                     HRKQDRNKESNIISSYESKKFSNESDTDFILAQNRAWAKEIKTKYENLKDYDVYPVIG
                     ELDFKAENLNVLEVKDKIEDRVIGKAYLAGEKEIKQALEVAKNSKFTQKSHDEIYQIL
                     AKSAKLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFIEFYPHSLEELKKQNPKVT
                     FTPKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDSGI
                     PKDALIFLPSKGSDISKYLLIDEAIKFSILTGGEDTAYAMLKANPTLLLSAETGGKNA
                     TIVSKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYHDEEFKKTLVDAASSMA
                     VGNPFEFKNKLGTLADKPSSKVQKALDELQPYEEWALKPKFLEDNPYLMTPGIKYGTK
                     KGDFTHMNELFVPILSVMKAKDLKEAIDIVNSTGYGLTAGFESLDEREWEYFHTHIEA
                     GNIYINKPTTGAIVLRQPFGGIKKSAIGLGRKVGIYNYITQFLEVKQEDFDDHLIEDK
                     FSKKLAQIDLKEAQDFMNNLIKMSQSYAYHYKNEFSVSKDYVNIRGEDNLFSYTKIKN
                     MVLRLCGNESLKDVLGVVLGANIANIDLSISYDEQDVSIIERIVQSIGAKVLFLKENK
                     ENFIKSIKEYERVRYLAKPDVNDEIYKEAAKLAKIIIREKPLLNGRFELLNYFNEKAL
                     SISFHRYGNLGIRAIS"
     gene            complement(11701..12723)
                     /gene="selD"
                     /locus_tag="SF008_000752"
     CDS             complement(11701..12723)
                     /gene="selD"
                     /locus_tag="SF008_000752"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(12673..12675),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HEG8233037.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDLNILKELLEGANDKVKECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTSKIGDCIILTKPLGTGILSTALKAQMLNQKHLDIMLKNMMELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFESELPFLDGVKEYFNMGLIPAGAYKNLEF
                     IKELTPDLNEEKLLLCDPQTSGGLLISISEKDSLECLKKLEDENIQAKIIAKVVNKQE
                     NDIIIS"
     gene            complement(12733..13305)
                     /gene="yedF"
                     /locus_tag="SF008_000753"
     CDS             complement(12733..13305)
                     /gene="yedF"
                     /locus_tag="SF008_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEG8233038.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEIVLNSIISKNNVV
                     KFLNSLNLNPVVDENAQEFCIKVQKKNFDSSKVNIHDYNVLFLKTDKVGEGELGQNLL
                     VGFLSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEIISCGACLEFF
                     NKSKELKIGNIGNAYEILNELFGKAKIITL"
     gene            complement(13416..15518)
                     /gene="ccaA"
                     /locus_tag="SF008_000754"
     CDS             complement(13416..15518)
                     /gene="ccaA"
                     /locus_tag="SF008_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HEG8233039.1"
                     /translation="MFKSLNIGLKLIFSVATVVVIGLVILISLITKQVSQNITKNTED
                     ILASITKEYATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDN
                     SAYSNFTYLYLIDPPEYFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIAN
                     LQVVQDILKKAKYGENKVYIGRPIKMNLEGQDFDAVNVAMPIFDRKNQVVGVIGMTLD
                     FSDIATYLLDPKGQKYDGELRVLLNSDGFMAIHPNKNLVLKNLKDINPNKGAQETYKA
                     ISEGKNGVFNYIASDGDDSYAAINSFKVQDSSWAVLVTAPKYSVFKPLKKLQLIILGA
                     SFIFIFVVLGVVYYCVRKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGA
                     MGRIINENIEKIQISLEQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKNVL
                     NRMLDVLQSKIGSNMNEINRVFDSYKALDFSTEVFNAKGEVEITTNILGKEIKKMLLA
                     SSNFAKDLANQSEELKNSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVA
                     SQADDIKNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKS
                     LSEIEANINILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITN
                     EVNQIAAAILEDVNKKRF"
BASE COUNT         5188 a         2797 c         1908 g         5627 t
ORIGIN      
        1 tagaaagttt tgcctaattt atcaatattt ttaaaaataa cttgataagg ttttttatat
       61 gaaagttttt ttaaaagttc ttcaatataa cattcctcaa catctggatg tttaaatatt
      121 gaatgttttt ttcctataag ctctttttta ctatatccac ttatttgaca aagcttatca
      181 ctgacaaaaa ttaaatttcc ttgaacatca gctcttgaaa aaattgtatt tttttcaaga
      241 gctttaaaaa actgatcttt aaaaaaatct ttcattgaaa agccttaaaa cctatatagg
      301 caagatttat accgtaacaa acaataacgc catacgataa ataattaaat aaatttttca
      361 aaaaatcact aaaaaactgt gaaattttag aaaaaaataa catcgcaggt aaagttgata
      421 ttccaaaaat catcattacc aacatacctt caaaaatatt ttgcttactc attgcattgg
      481 ctataaaaaa atacaccaat ccacaaggaa caaaaccatt tgaaaatcct aaaaatatgg
      541 ctgattttaa tcctttaaaa tttttagatt ttttaataat tttctttaca aaactatcaa
      601 aaaaaacatt attttcaata aaagataaca tattgcctct aaaaataaga gcaaaaccca
      661 aaatcatcat aaatatacca agaataaaaa atgacaaact ttgaacctta gcattgattg
      721 ccaagatatt cccaaaagtc ccaaaaatta tccctaaaac aatataagca aaaattctaa
      781 acaaattata aataaaagtt aataaaaata aattattgct ttttgaattc aaatttataa
      841 aaagtaaatt aaaaccacca cacatagaat agcagtgtcc aaaactagat aaaaaagcaa
      901 cgctgataat agctaaaaaa tctatactca catcaaattc ataaattctt taaaaatata
      961 cttactttca tgaggacctg aagaactttc tggatgatgt tgtactgaaa taataggata
     1021 gtctttatat cttactcctt caacattatc gccaaataaa tttctatgag tgatatgagc
     1081 cacttgagct aattcttctg gaacattata attatgattt tgtgcggtaa tttctaccgt
     1141 ttttgtatca agattgatca caggatgatt tgctccatgt tgtccaaatt tcattttata
     1201 agtttcatat ccaaaagcat tacttaaaag ctggtgacct aagcaaattc caagcatagg
     1261 aattttagct tctgcaagtt ttttaatctc tgcaatctct tgttttaaaa tccttggctc
     1321 acctggacca ttagaaagaa acacgccttg aatttcacct tttttataca gagtaatcaa
     1381 ctcatctgct ttaacattat atggataaac ttctacttca aaacctactt ctacaagttc
     1441 atttaagata tttgttttaa caccataatc tataacagca acttttttct cacttctttt
     1501 agcatcatta aatttttgaa aactagcgtt ccaaacgcct tgtttatgag aataattttt
     1561 cttagtgcta acttctttta caaaatttac ttcatcaatt tttgctgatt tttctaaggc
     1621 gatttttaaa tcttctttat ttgaaatttc agttgaaatt acagctctta aattgccatt
     1681 atttcttatc atttttacta gatatctcgt atcaagttca taaattccta tttttccatg
     1741 tttttcaaga taatcttgca gactttcttt agcgcgaaaa tttgaaaaac tggaacttaa
     1801 ttcacgcatt aaaacaccac ttgcaaaaat ttccttgctt tcattatcat tttcattggt
     1861 tcccactata ccaatttctg gcatggaaaa tacgataaat tgccctgcat aagaaggatc
     1921 tgaaataatt tcttgatacc ctgttaaaga agtgttaaat acaagctctc caaaaaaagt
     1981 accgctcttt ccaaaagcct tagcacttaa aaaaatatca ttttctaaat aaatataagc
     2041 cttcattaaa acataccttt ttttctgagc tcttcttgat agagtttttc aaagataaga
     2101 tcatactctt cgctacctgg aataggtttt gttttataat tgctaatttt ctcataaacc
     2161 tcatcttcaa gtttttcata aattttaaga taagactcta tgcttgaaaa gattaaattt
     2221 ttaactctat tttcactcac tataaaatta atataatcat tctctacaag ttcttctaaa
     2281 atttgatgcg ctagatgatt atgtctatct tcagaatcta aaatcacatt aaattcagga
     2341 gctaactttt tcttcacaag ccaaaacata tttttacgat ctacttgcat aagctccatt
     2401 tcatcttctt gttgctctaa aagctctttt actctttcat ctaattttct ttcatttaga
     2461 atatctttct ctaaaacttc tattatacat accttaagct tttctaattg atctttaatt
     2521 tctacaaaag aagaattagc tatatctaac atcattttat ttgcgatata aggaatatgt
     2581 ggtaatttta tacgcatctt aaaaaccttt tatttgataa tgtttgaaat aatagcttat
     2641 ttttggtaaa agaatgttaa aaatgaaaaa ttttcattat tttaatcacc taattactag
     2701 cattattatc taaatttttc aaaagcaaag taagctcgct agcttttttt ggatccattt
     2761 tagataaaac acctgaaatt ttacgcgatt ccaaagaaag cattattttg cttgcatcct
     2821 ctgcatccat ttgacttaaa acatctgcaa tggctgcatc tttcatttgg gaataaattt
     2881 ctttaaccct accttgagtt ttatcattga ttgaatttaa aatcttttgt tgtttttcta
     2941 caagccttgc gttttcaagc tttaattctt caatttttgc caaagttgca ttaacctcag
     3001 cctctttttt ttctaaattt tcaagccttt ctttttgcaa agcttcaaaa gaggctttat
     3061 aagcttctaa agattgtctt gcttcatcaa attctctagt ttgcaattca atttgagctt
     3121 ttctagcttc aaaatactgc tcacaatctt gttcagctcc aaaaactaca cttgaaataa
     3181 aaactaacaa tataaatttt ttaatcatct ttttctcctt tgaaaaaacg actgattgca
     3241 atttcatcta aaaatttttc ttcagccttg gcaagttctt tttgcttttg tttaatttcc
     3301 tcggcttcta aaaccttcat tttttcataa tctaaatgtg ctttttgata taaaaactga
     3361 taatgattca tttctttttt agaaagttct actttctccc tagctcttgc caaagcctcg
     3421 cgtcctactt gcgccatact taaattcgat cttaactctg ctatagatcc tgattttggc
     3481 aatacgccta aactttcaca ctcttggcgt gaaagttcat aagctttttc atgttcaagc
     3541 tgtctttgtt tggcttgatt aagatttgat tctgctttat caagttgttg ttttcttacc
     3601 tttacaacag aattatattt acttttcata agatgatagt atcatctctt tcagggctag
     3661 tagaaatata ctttacctta acccctgcaa gctcttcaag tcttgctata tattttttag
     3721 cattttctgg caataaatca taatctttta taccaaaaac tttatcccaa ccatccattt
     3781 cttcataaat aggttgaaca ttttctaaat cgcttggtat atagtcgatt tccatgccct
     3841 tatattcata agcacgacaa atttttatct tttcaaaacc atctaaaaca tcgagcttca
     3901 tcaaagataa agcatcaaga ccattaagtc ttgctgtata tcttacagca actgcatcaa
     3961 accatccaca gcgtctttta cgtcccgtgc ttacgccaat ttcttttcca atttgcgcaa
     4021 ttttttctcc atcttcaccc ttatcctcag taggaaaagc tccatttccc acacgcgttg
     4081 tataagcttt tacaatacct ataatatttc ccgcttcttt aggatttaac ccaagtcctg
     4141 ttaaagcgcc tgctgaaata gtacttgagc ttgtaacata aggataagtt ccatgatcaa
     4201 tatcaagcat agagccctga gctccttcta aaagtactct tttatcttca tctaaagcct
     4261 tccaaagcat tcttgtagta tctgtaatat aaggagttaa aatttcatta aaacgtttta
     4321 aatcagcaag caattcttca gcacttggaa tttcaatttc aagcatttca aaaaaagttt
     4381 tattagcttc aaaatctttt atcaaagcct cgcaaagtct ttgtggttct aaaagctctc
     4441 caactctatg tcctgtacga ttaatcttat ctgcataaga aggtcctata cccttacctg
     4501 ttgttcctat ggcatgtttg cctttgagtt tttcttttgc aatgtctatt aaagaatgat
     4561 gttttaaatt taaatgagct ctatcgctga tatataatct accttttaaa ttttcaaatt
     4621 gagccatttc agcgatcaat acttcaggag aaaccacaac tccatttccg ataatattaa
     4681 tacatcttgg atgcaaaact ccacttggca taagatgaag cgcatatctt acaccattta
     4741 cccaaatcgt atgtcctgca ttgtgtccac ctgcacttct gcaaacaaaa tcataatttt
     4801 cacataattt atcaactacc ttgccttttc cttcatcgcc ccattgaatg ccgacaataa
     4861 tatctgcttt gctcataaaa atttccttga ttttacttaa tattggcgag aagatgagag
     4921 aatcgaactc cccaaagaat agtcaactat cctttcatct gatttgaagt cagtggcgat
     4981 caccagatac gctaatcttc caaagtgata attatagcga tttttaatga aaaacaaaat
     5041 aaatttatca atattctttt tgacttcaca ttaaatttaa gctataatct cactcttttt
     5101 tagcatcaag ttttgatgat tacattttta ggatctttct ttgaattctt ttaaacaaaa
     5161 atatttaatc aatttttggg acaattcccg ttctatgatt gcacttggaa ttttaagtgc
     5221 agtgtatttt ggaatttttg gtggagtttg ggctgttact ggagaaatga cgcgttgggg
     5281 tggtgaattt ttagaacttt taggtatgaa tttagatgga tattcttatt accaaaagca
     5341 aaatttaaat ggaacccctt taacaagaac tgatggtatt atgctcatag gtatgtttat
     5401 aggttgttta gtagccgcac ttttagctaa caaagtcaaa tttcgtctac ctgctagcaa
     5461 tataagaatt tttcaagcaa tagtaggtgg aattctttca ggatatggag caagacttgc
     5521 atttggatgc aatttagcta atttttttac aggtttacct tatttttctt tacacacttg
     5581 gctttttact gtttttatgg ttttaggaat ttatctagga gtaaaaattt gcaacacttc
     5641 cttttttaaa tctaaagcta aattagaacg ggtaaataaa gaaaacttgc cgctaaacaa
     5701 gcaaagtttg cgtacaaaac tatattttaa cttaggcata ttgcttttca tagccttttt
     5761 ggtttgggtg ttttatcttg tttttacaaa tggcaatatc agcacacaaa acaaacaaag
     5821 tcttctagct ttagcactga tttttggttt tgtttttggt tttgttattt ctagggggca
     5881 aatttgtttt acttcttgct ttagagattt atttttattt ggtagagata atgctataaa
     5941 aggcgcatta atcggtatga ttatcgcctc tttaatcgct tttgctttta tcttgcaggg
     6001 tcatactagt aaactcatag aactttctcc tgctgtagct gtgggggcat ttttatttgg
     6061 ttttggtata gtttttgccg gaggttgtga gtgtggttgg acttatcgtg cctttgaagg
     6121 acaaagtcat tttatgatag taggaattgc aaacataata ggaactatga ttttagcctt
     6181 aagttatgac tttttaccaa aggctcttaa agaaggtgta aaaatcaatc ttttaactga
     6241 atttggaaat ttaaatggat tttttatcaa ccttgtttta tttatcctaa tgtttgcttt
     6301 tgtggtattt tacaaaaaac acttctttaa aaatcaactt aaaggataaa caatgaaaat
     6361 tacttatagt ttaaatttgc aaggtgaagc ttgcccttat cctgctatag caacacttga
     6421 tgtcttacct aagcttaaaa gtggagaaat tttagaagta ctttgtgatt gtccacaaag
     6481 tatcaattcc atacctcaag atgcaaaaaa ccgtggtttt aaagtgcttg aaatcgatca
     6541 aagtggaccc acgctaagat ttttaataca aaagccttaa aaaaggcttt tgttctcaaa
     6601 gctcttttaa catcttttca taagctgctt tagttccaga tcttacattt gtaaacaaac
     6661 ttgcaataat aatcaccgcc gaagctgcta aaaaccctgg aactatttca taaagacccg
     6721 aatttgcaaa attcttccaa agtaccacag tagcagctcc tgttatcata cctaagattg
     6781 ctcctactct tgtcatccta ctccaaaata aagaaaaaag cattacagaa ccaaaagaag
     6841 ctccaaatcc ggcccatgca taagaaacta tactcaaaac acttgagttt ttatcagtag
     6901 aaatcaaaaa cgctattaca gctaccaata aaacacctaa tttacctaaa tttaatacaa
     6961 catgacttgg cgcatcttct ctaaaaatct ttttataaaa atcttccgct atagtagaac
     7021 ttgaaaccag caattgtgaa cttgctgtac tcataatagc tgctaaaata gcactgagta
     7081 aaatacctgc tatccaagga ttaaataaaa gctgcgacat cacgatgaaa atcttttcag
     7141 gatcttgcaa acttaattca aatttatgca cataagctat gcccaaaata cctatcatac
     7201 aagcacttaa aagacaaacc gccatccaag caatacctat aaaagtggcc ataggaatat
     7261 ctttagtaga acgaatcgac ataaaacgca ctaaaatatg tggttgacca aaataaccca
     7321 aaccccaagc aagtgcagat ataatactta taactcctac tccttcgccc atagataaag
     7381 cttgtggttt tatttctctt actatattca tcgcttcacc aaagccacct aaatgataaa
     7441 gcataaccaa aggtacaata attaaagcca tcatcattaa aagcccttgt atcatatccg
     7501 tccaacaaac cgccttatat ccacctaaaa aagtataagc aacaataata atcgttccag
     7561 tagttaaagc ataatcgtat ctgataccaa aagtactttc aaaaagtttt gctccgctta
     7621 caagccctga tgaaacataa aaggtaaaaa atatcaaaat taccaccgca catacgatgc
     7681 gcagtatatg tttatcatca tcaaaacgag tttcaaaata atcaggaata gtcaaagaat
     7741 ttgcaatcac actggtataa attctaagtc tttttgccac aaaaatccaa tttaaactag
     7801 ctcctatagt aagcccaatt gcaatataag aatctataaa accacttaca tataaagctc
     7861 ccggtaaacc cattaaaagc caaccactca tatcagaagc ccctgcgcta agtgcagata
     7921 tcacaggccc catagtacgc ccacctagaa aataatcctc tgaattttta ttttgtttat
     7981 aaaaataaaa acctatataa agcattaata aggcataagc tacaaacatc actgctattg
     8041 gggtattaat ttgaaccact tccatcaatc tctccttgat cattaagata ttgctctaat
     8101 gcctaaattt ccataacgat gaaaagatat acttaaagct ttttcattaa aataatttaa
     8161 aagttcaaaa cgaccattta ataatggctt ttctcttata atgattttag caagctttgc
     8221 agcctcttta taaatctcat catttacatc tggctttgct aaataacgca ctctttcata
     8281 ttctttaata ctcttgataa aattttcttt attttctttt aaaaacaata cttttgctcc
     8341 tatgctttga acaattcgtt ctattatact aacatcttgt tcatcataac tgatacttag
     8401 atcaatattt gcaatatttg cacctaaaac cacacctaaa acatctttta agctttcatt
     8461 tccacaaagt cttaaaacca tattctttat tttagtataa gaaaaaagat tatcttctcc
     8521 acgaatattg acataatctt ttgaaacact aaactcgttt ttataatgat aagcataaga
     8581 ttgagacatt ttaattaaat tgttcataaa atcttgtgct tcttttaaat ctatttgtgc
     8641 taattttttt gaaaatttat cttcaattaa atgatcatca aaatcttctt gcttaacctc
     8701 taaaaattga gtgatataat tataaattcc cacttttcta cccaaaccta tagctgattt
     8761 tttaatccca ccaaaaggtt gacgcagcac tatagcccct gtggttggtt tattgatata
     8821 aatatttcct gcttctatgt gagtgtgaaa atactcccat tctctttcat ctaagctttc
     8881 aaaacctgca gttaaaccat aacctgtgga atttactata tcaatagctt cttttaagtc
     8941 tttagccttc atcacactta aaatcggtac aaaaagttca ttcatatgag taaaatcacc
     9001 ctttttagtg ccatatttta tgcctggagt catcaaataa ggattatcct ctaaaaactt
     9061 aggttttaat gcccattctt cataaggttg taattcatct aaggcctttt gaactttaga
     9121 acttggctta tcagctaaag tacctaattt atttttaaat tcaaaaggat tgcccactgc
     9181 catagaactc gcagcatcca ctaaagtctt tttaaattct tcatcatgat aaacctcttc
     9241 ttctaagact agcaaagaag tagctgaaca tttttgaccg ctattactaa aagcagaatg
     9301 aatgatattt ttaatcgcac tatcacgatc agcaaattta gaaactatag tcgcattctt
     9361 tccgccagtt tcagcactta aaagcaaggt tggattagct tttaacatag cataagcagt
     9421 atcctctcct cctgtaagaa ttgaaaattt aatcgcttca tcaataagta aatatttaga
     9481 aatatcactt ccttttgaag gtaagaaaat caaagcatct tttggaatac ccgaatccca
     9541 aaaacactta caaagcatat aacctgttag agttgaaagt gaagaaggtt tgtaaatcac
     9601 cacattacct gcggctagtg gtgcagctat agtacctact gaaattccta taggaaaatt
     9661 ccaaggagct atggtaaccc ctataccttt aggtgtgaat gtaacttttg gattttgttt
     9721 tttaagctct tctaaagagt gcggataaaa ctctataaaa tcaatagcct cgcttacttc
     9781 aggatcgatc tctaaaaagg ttttacccac ttctaaagct gccaaaccta tcaaatcccc
     9841 tcttctttct ctcatcagtt ttgcactttt ggctaaaatt tgataaattt catcatgact
     9901 tttttgtgta aatttggaat ttttagctac ttctaaagct tgtttgattt ctttttctcc
     9961 tgctaaataa gcctttccta taactctatc ttcgatctta tctttaactt ctaaaacatt
    10021 taaattttct gctttaaaat caagttcgcc tataacagga taaacatcat aatcttttaa
    10081 attttcatat ttagttttaa tttctttagc ccacgctcta ttttgcgcta aaataaaatc
    10141 cgtatcgctt tcattgctaa attttttact ttcataagaa cttatgatat ttgattcttt
    10201 atttctatct tgcttacgat gtgtagtatt atcaagagtt tttatgcctt ctaaagattt
    10261 taaaaaaagt tctttttgga tattccagtt tttatctcct actttaagat tgaaaaaata
    10321 acgcataaaa ttatcttcac ttgtattttc atcaaggcgt cttacaagat aagcaatggc
    10381 attgttaaaa tgtgcttcat cgcaaactgg ggcataaagg attagatcat gcattttaga
    10441 taattcataa gaacattgca aactcatacc ttcaagcatt tcaaaagtaa aagaatccaa
    10501 agcacccact tcacttatac gtgtataaac ataagcaatc tcaaagatat tatgacttgc
    10561 aattcctatg ttgatgtatt tataattgtc tccttcaaga ataaaatcaa gcattttatt
    10621 ataattacta tcagtatcta tttttttgta aaaagtagga agctcccaac ccctttgaga
    10681 cgcaatggtt tcttcacttt ccatattagc acccttaaca aaacggatct taataggctt
    10741 catacctttt aaaaccctct cttttgaaaa agcaaaaagt tttttaagat acttataaga
    10801 atcaggaata taagcttgca aaacaatccc tgctttaata tcaaatttag ccacactttc
    10861 cataaaagct gcaacggtga gctctaaatc cctaaattct tccatatcaa gattgataaa
    10921 tttagataca ccttgttttt tctcttcttc taaggctaaa gcataaagat aatctagtct
    10981 ttttacgacc tcttctttgg aataattaaa atctataata ttaatttgcg aaaaaatagt
    11041 agtaattttt atggaaatat aagtgatata gcttgatttt aaggcttctt cgtatttttg
    11101 catacgatat ttactctcag cttcacctaa aacctcttcg ccgattaaat tcacatttaa
    11161 ggtaatttta tcttgctctt ttcttttctt aatatgtggt tctaaaacac taggatttgc
    11221 atctagaacc atagctttag tatcttctct taaatgtttg acaaaaaaag gtacacttaa
    11281 attaggagca aatttgccaa aatttaaaaa gctaaaaagt aggaattttt caaaagtgct
    11341 aaaaaaatcc gctatgccat atttactcaa agtatattct ataagctcaa aacttgcatt
    11401 tttatcttta catctaaaag aacgatctaa aagctctata agcataactt tatttttggg
    11461 attattaaga agtttttgca ttttagcatg gaattctttt tcagaatttg aaatattggc
    11521 ttctatttgt ccttgcaatt cttcagctaa ggctaaagct ttttgtatca tttcgtatct
    11581 cctaagataa aataaatttt aataaataat atataaataa gataaaaata atattttaaa
    11641 tcatagaaaa tgtataaaaa atgataaaaa aaattttaat gggtatataa gtaacaaaaa
    11701 ttaagaaatg ataatatcat tttcttgctt atttacaacc ttagcaataa ttttagcttg
    11761 aatattttca tcttctagtt tttttaaaca ttctaaggaa tctttttcac ttatagaaat
    11821 taaaagtcct cctgaagttt gtggatcaca aagtaataat ttttcttcat ttaaatcagg
    11881 ggtaagttct tttataaatt ctaaattttt ataagctcca gcaggaatta aacccatatt
    11941 aaaatactct tttactccat ctaaaaaagg aagttcactt tcaaaaattt caaaagaaat
    12001 atttttattt agcatttctt ttaaatgtcc taaaagtcca aaacctgtaa catcactcat
    12061 ggcacttgga tgaaatttaa gagcaatttg actggcttta taatttaact ccatcatgtt
    12121 tttaagcatt atatctaaat gtttttgatt taacatttgc gcctttaaag ctgtacttaa
    12181 aattcctgtt cctaaaggct tggttaaaat gatacaatct ccgattttag aagtattatt
    12241 agcaataaat ttactaggat gtacttttcc tgtaacacta agtccaaaaa aaagctcggt
    12301 gctttctata gtatggccac ccacgactaa agcattacat tctttaactt tatcatttgc
    12361 accttctaaa agctctttta agatgtttaa atcatgattg caagtatcaa aacctactat
    12421 atttaaggca ttaattacct ctgcacccat agcaaaaaca tcgcttaaag catttgctgc
    12481 agcaatagca ccaaaatgat aagcactatc tactatagga gtgataaaat caagcgtttg
    12541 caccaaagct aaatcaggac tgatttgata tacgcttgca tcttcattat ttccgatatc
    12601 actaagtaaa gcaggagttt tttgcatgaa atttaaaatt gttttaagac cacccgggct
    12661 taatttcgct gctcagcctg ctgctttaac aaaatgcgtt aaattttgat ttttatattg
    12721 cagtgttttt ccttatagag taatgatttt tgctttacca aaaagctcgt ttaaaatttc
    12781 ataagcattg cctatatttc ctattttaag ttctttgctt ttattaaaaa attctagaca
    12841 agctccacaa cttatgatct caatacctaa attttcaagt tctttcatag ctaaatgtgc
    12901 tttatgattt tcatcaacat tgattaaaac actttcattt acgcaaagaa ttttacttgg
    12961 agcatgatct aaatttttta aggtacttaa aaatcctaca agtaaatttt gtcccaattc
    13021 accctcaccc actttgtcgg tttttaaaaa taaaacatta taatcgtgaa tatttacttt
    13081 actagaatca aaattctttt tttgtacttt gatgcaaaac tcttgtgcat tttcatctac
    13141 aacagggttt aaatttaaag agttaagaaa ttttacaaca ttattttttg aaataataga
    13201 atttaaaaca atttctaaaa tttcattttc ttgaagtttt tcaagagcgt tttttgtttc
    13261 aactataggc tgaggacaag atagattgcg acaatcaatt ttcattattt ttccttgata
    13321 ttagctttga aaaataatat tattttatta cttgttttgt gtttaaaaat tttaaataat
    13381 atagaaaaaa tttaaaagct caaaaatgag cttttttaaa atcttttttt attcacatct
    13441 tcaagaattg ccgcagcaat ttgattgact tcatttgtta tattattggt gacatttgca
    13501 acttcgacat tttccttagt tacagtttca agttgtgcta tagcatcgtt aatctgtgtg
    13561 attcctgctg tttgttcttt tacagattct gctacttcat ttacgctttg aacaagtata
    13621 ttaatatttg cctcgatttc agataaggat tttcctgttc tttccgcaag ctgtcttacc
    13681 tcatctgcaa caactgcaaa accacgccca tgttctccag cacgtgcagc ttcaatagct
    13741 gcatttaaag caagaagatt cgtttgctca gcgatatctt taatcacatt gacaatattt
    13801 tttatatcat cagcttgtga agcaacctca actgtttttc cacttacatt ttgcatagaa
    13861 gaattaatct cctccacagc tgcagccgat tgttctaaag aactcgcttg tgcattagag
    13921 ccatcagcaa gtttttgcat agaatttttt aactcttctg actgattggc taaatcttta
    13981 gcaaaatttg aagaagccaa aagcatcttt ttaatttctt tgcctaaaat attagttgta
    14041 atctcaactt cacctttagc attaaatact tctgtactaa aatcaagagc cttataacta
    14101 tcaaaaactc tattaatttc attcatatta gaaccaattt tactttgtaa aacatcaagc
    14161 atcctattaa gaacattttt aagttctact aattgaggat ttataggatt tttagtaatt
    14221 cttgcagtta aattaccctt ttcgatttct ctagcagttt gcaccgattc atctacagca
    14281 ttttgatctt gttctaaaga tatttgaatc ttttcaatat tttcatttat gattcttccc
    14341 attgctccta gctcatcatt agcacgaatt tcaatagcct taggttcaat tttttcatga
    14401 tttaaaaaac ggaaaaatga ttctaaagaa ctaagaatca caggcaatct agatgcgaca
    14461 atttttctta cgcaataata aaccactcct aaaacaacaa aaataaaaat aaaagatgca
    14521 ccaagaataa ttaattgtaa tttttttaag ggtttaaata ccgaatattt aggagcagtt
    14581 accaaaactg cccaagaact atcttgcact ttaaaactat taatcgcagc ataagaatca
    14641 tcaccatcag aagctatata gttaaaaact ccattttttc cttcacttat ggccttataa
    14701 gtttcttgtg cacctttatt aggattgata tcttttaaat tttttaaaac tagattttta
    14761 tttggatgta tcgccataaa accatctgaa tttaaaagaa ctcttaattc accatcatat
    14821 ttttgacctt tagggtctaa aagataagta gcaatatctg aaaaatctaa agtcatgcct
    14881 atgacaccta caacttgatt ttttcgatca aaaataggca tagcaacatt tacagcatca
    14941 aaatcttgac cttctaaatt catcttaata ggacggccta tatatacttt attttcccca
    15001 tattttgctt tttttaatat atcttgcaca acttgcagat tagctatttc atcactagct
    15061 tgtattgctt ttattccgcc tttattatcc ttttcttcat cagcgtaaag cataacaaat
    15121 tttccacttt gagtattaaa aaatttactc tcttctttaa agtattctgg cggatcaata
    15181 agatataaat aagtaaaatt agaataagca ctattatcaa aagtattggt tataatattt
    15241 gttatattgt ctatatctaa atcttcttta gaggttgatc taaacatttc tgttaaagta
    15301 cctgaaatac ttttatttaa agcgatcatt tccccaaaaa ttccttgagt ttgagtagca
    15361 tattctttcg tgatagaagc aagaatatct tctgtatttt tggtaatatt ttgacttact
    15421 tgttttgtga ttaatgaaat taaaataaca agtccaataa caacaacagt tgccacagaa
    15481 aaaataagtt ttaaacctat atttaaagat ttaaacatct
//
LOCUS       DARGEY010000028        15150 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.028, whole genome shotgun sequence.
ACCESSION   DARGEY010000028 DARGEY010000000
VERSION     DARGEY010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15150
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.028"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..731
                     /locus_tag="SF008_000755"
     CDS             <1..731
                     /locus_tag="SF008_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HEG8233040.1"
                     /translation="NHNFTSFVLLDKVDFNFSELKSILEDKFNIKIADENFTKEGVIF
                     SYENMLVTLNLIKNPIPNHEAEYYANFNFMWKDALEQTKKHKAHLLIAVLSQDQSKLE
                     QAKMFTKIAALCLDNKHALGFYTGAVVLEPSFYIENAKMLDDNRLPVYNWIYVSVYPS
                     ENGVNAYTYGLRNFDKLELEVCDLNIEEKELFFYIYDIVLHILTYDINLKDKDILKFE
                     DGKEIKFIKSQGISVENESLKIIF"
     gene            795..1211
                     /locus_tag="SF008_000756"
     CDS             795..1211
                     /locus_tag="SF008_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEG8233041.1"
                     /translation="MKAKLTLLALLGTTVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGEWKEVDGKYKALPHTILPNVMKKVSATQSNA
                     QILEVDKEINGYKFKFNNNMEVYTDMQGNILGQKLD"
     gene            1471..2721
                     /locus_tag="SF008_000757"
     CDS             1471..2721
                     /locus_tag="SF008_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HEG8233042.1"
                     /translation="MNTPKWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVI
                     LVLAFPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILL
                     VYSANLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFL
                     VFPFIIFLFIFSLLLIPQWNLSLFANVDFSVISTSNFWVTLWLVIPVMVFSFNHSPII
                     SSLACYCKKEYGGYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNI
                     NILTFIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASNGRIQGK
                     FAQTLTAIITFAIAWFVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFR
                     NKFLDLFVLVMGIVAISAAIHDLL"
     gene            2736..4100
                     /locus_tag="SF008_000758"
     CDS             2736..4100
                     /locus_tag="SF008_000758"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HEG8233043.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVEV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLC
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAELEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEIRAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKAIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGVNAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(4108..4629)
                     /locus_tag="SF008_000759"
     CDS             complement(4108..4629)
                     /locus_tag="SF008_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233044.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDAL
                     NLNNEIFFYQSLKEGLFKENDEILVSNLGKKIILFRNFTQNCDNFNEAKLKQILLLFF
                     LLLASVFFASLAMINEFGVIDLVFLMICLLLLVMGAINLGLLFKQIRILKSFSKEEMK
                     EFLSLRMKKYTKV"
     gene            complement(4610..5620)
                     /gene="ribD"
                     /locus_tag="SF008_000760"
     CDS             complement(4610..5620)
                     /gene="ribD"
                     /locus_tag="SF008_000760"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HEG8233045.1"
                     /translation="MSNFKIQGRQMKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKN
                     EKILAIKAHEKAGLAHAELNAIAHAFKNLRPEISLPKEANALHEFICKNHQGVFKDSI
                     AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDGNKIASGGAEFLKKQGIEVEFDI
                     LKEEGKKLLKPFLKWQKGQFKLFKLALSMNGSPFGKIVSNELSRTYAHKIRAVIDLLV
                     VGGETIRKDHPILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEA
                     KFLMYEGGENFLKTFKDEIDMFLIFQSSSLNDEKNVTIPLNFKPLYRNFLGSDTYGIY
                     EL"
     gene            complement(5826..5913)
                     /locus_tag="SF008_000761"
     tRNA            complement(5826..5913)
                     /locus_tag="SF008_000761"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5877..5879),aa:Ser,seq:tga)
     gene            complement(5935..6008)
                     /locus_tag="SF008_000762"
     tRNA            complement(5935..6008)
                     /locus_tag="SF008_000762"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5974..5976),aa:Cys,seq:gca)
     gene            complement(6027..6115)
                     /locus_tag="SF008_000763"
     tRNA            complement(6027..6115)
                     /locus_tag="SF008_000763"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6079..6081),aa:Leu,seq:taa)
     gene            complement(6125..6199)
                     /locus_tag="SF008_000764"
     tRNA            complement(6125..6199)
                     /locus_tag="SF008_000764"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6165..6167),aa:Gly,seq:gcc)
     gene            complement(6271..7023)
                     /locus_tag="SF008_000765"
     CDS             complement(6271..7023)
                     /locus_tag="SF008_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233046.1"
                     /translation="MLAFFKGLGVGFLCLLLFVAGVVFNVEFLGKKDSNHDLYFSRNI
                     EVSNTLKPDILYANINFWANENLSSKITLDNSEKAEITNTFNQILERSKKENFCSGGS
                     FSLEPNFSYKDGIQTPKGQRFDANLECEFKENQLADFNKLLNDINSIIAKNNFISVST
                     PAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTYSLDLNKTCVLKNLQVNTNANIAPR
                     MLNAKSDNIELSSPIISEKEQILSAKALFICK"
     gene            7096..8115
                     /gene="mutY"
                     /locus_tag="SF008_000766"
     CDS             7096..8115
                     /gene="mutY"
                     /locus_tag="SF008_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEG8233047.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLQKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFGAKLPKEVEDLKKLSGIGAYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKRAKELLNLNHAFDHNQALLDIGALVCVGKNAKCGICPLYDF
                     CQGKFHTELYPRAKKILYESLNLNLFLFEFNKKFAIQKSQDKLYKGMYNFPFFKEGEY
                     KLSKDMGFVGEFKHSYTKYKLNIKVYHQILNNENKNYKFKTLKELESTALSALSLKAL
                     KLIKL"
     gene            complement(8101..9360)
                     /locus_tag="SF008_000767"
     CDS             complement(8101..9360)
                     /locus_tag="SF008_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8233048.1"
                     /translation="MQELTRTKKIRSIIAASSGNLVEWFDFYIYAFTATYFAHTFSTS
                     DNPVIQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVISVVLMALGSFMIAAL
                     PSKDTVGDLAIILLLIARLIQGLSVGGEYGIAATYLSELATEGKRGFYSSFQYVTLIG
                     GQLLAVASISIMFLFFSIDDMKDYAWRILFAIGGILALGSLFVRKMMNESATKLHQHE
                     DRGTLKALCKSWKPFLMVLGVTSGGSLAFYTITTYTKTFMENTGMDKMLVNNLFLGAL
                     FILMIIQPLFGYIGDKIGHKRSLIVFCILALVGIYPIFSLIANNAQNNPSLTFMLVVL
                     LFVILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAVFGGSAPWVALQFKNAGIEN
                     GFFIYIAIFTIIMLIATLCLPKKSELN"
     gene            9526..10383
                     /locus_tag="SF008_000768"
     CDS             9526..10383
                     /locus_tag="SF008_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HEG8233049.1"
                     /translation="MKFKKIYIELSDICGLKCDFCPSRKGIRGVMSEEKFQNLAYEIS
                     NKAELFTFHLLGDPLLLPNLGNYLKIAKDEAMKLEITTSGFYLNSKNQALLLGYENIH
                     QINISLMSFLSQSKISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNL
                     KIYEFLAKEFEAKIDANLSKNRLQRHILLHQNKLFKWPNLKDKPLYKKGKCHALKEQI
                     GILSDGSLVPCCLDTKADINLGNVFENNFDKLFKSPRIKMMKKAFEEDKRIEKLCQTC
                     EFFKARLSD"
     gene            complement(10380..11186)
                     /locus_tag="SF008_000769"
     CDS             complement(10380..11186)
                     /locus_tag="SF008_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8233050.1"
                     /translation="MKKILIIMSLFLITLNAKERLVVLDPASIETLFMLKAEDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAERLEDITKNITTLGQITKKEKEAELLKQEFAQNLKKLSDKPLNKSAIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGINAKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTPILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(11183..11959)
                     /locus_tag="SF008_000770"
     CDS             complement(11183..11959)
                     /locus_tag="SF008_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8233051.1"
                     /translation="MLKIHDLSFAYHQKDLLKNIHLELKNQAFIGILGPNGSGKSTLL
                     KLILKNLSPNKGVISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYA
                     NLKHAFSSYSKEDILEIKKFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLSLCEKLVKEKNIAVVAILHDLNLASMFCDKILFLKEGEIK
                     YFGTSKELFTQEILKEIYDLNCEIIYKNSKPYILALKEKK"
     gene            complement(11959..12945)
                     /locus_tag="SF008_000771"
     CDS             complement(11959..12945)
                     /locus_tag="SF008_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEG8233052.1"
                     /translation="MLNLNTHSKILVIIGLLVAYIIASFTALCLGDENLNPKELFSYI
                     FSQDEILRQIIIDGRLPRIIMAILIGMLLASSGAITQNAFSNPIADPYIIGIASAATF
                     GAVLAYLLKLNDYYYGILGFVCSAFFALGVFKISSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGNASWFRVGILILPLIFCLFYFYAHKNELNILLSGDD
                     EARNLGVNAQKLKINLLIVSSLAVSFAVAFSGLIGFVGLIIPHAIRLLLKNYNNALVI
                     PLCTAFGGLFLLICDTLARTLLAPVQIPIGILTAFFGAPIFLYLALSARRFL"
     gene            complement(12920..15052)
                     /locus_tag="SF008_000772"
     CDS             complement(12920..15052)
                     /locus_tag="SF008_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEG8233053.1"
                     /translation="MHPNKKAFKLSLFALLLITNLNAQESNKAINLQKVVVSTTGFEQ
                     DADSNLRNVISIEGKDLQNKGYVSLEQALERISGISFVNFGLGRNIDMRGQGNKSNIA
                     VKVMIDGHAINVLDNSHGVTPLDSINLDNVERIEIIPGGGSVLYGSGTRGGVINIITK
                     KQKSDAFAINLKSSTYNHGGLGGNLGINGAKQINENLAFSFDIQSFNLDGYQKGYNEK
                     GYFINTKTYIDINDNSDLTLGYNYFKSKNTSSGYLTKAQAQSDPTQKGNSDNITQINR
                     PEISLDYHYYFDDIWEFNLEAFWQNQKINYLKDEISMMGTTAYQNGSGFEDTLTGISL
                     KNKLNYANNSYFIFGYEFTNHDAKRKSLVYYSVPGVINYHRMTTLMDMTKQSHSIFAL
                     DSHNFNEFFTLSGGARYEFSTYNTNRSYRNEMSMNGRPPSSNPIITDSTTLFDTDKNT
                     NNFAFEITPNFKYSDTGNLYLKYERGFVSPTPAQFVNRNKTGNGIPPYYSSNLKAEIF
                     DTFELGIDDFWWDFYGFNLTLFYTLSKDEISYLGNPHSTSGSWWKYYNIDQTRRLGVE
                     LSLSQNFLDDDLIFRESLTYLDAKISKGVNDGVRIPYVSKIKATAGLEYAWNKNFSNF
                     IDLTYFSRAKDGGTIDENTGKMSKNSWIRDYFLTDIGMKYNYKKLQILAGIRNLFDKR
                     YYTYQDSINDQYLVGNGRNYYVEFKYAF"
BASE COUNT         5164 a         2198 c         2418 g         5370 t
ORIGIN      
        1 taaatcacaa ttttacctct tttgttcttc ttgataaagt tgattttaat ttttcggagt
       61 taaaaagcat tttagaagat aaatttaata taaaaatagc tgatgaaaat tttaccaaag
      121 agggcgtgat tttttcatat gaaaatatgt tagttactct aaatttgatt aaaaatccta
      181 tacctaatca cgaagcagaa tactatgcaa attttaattt tatgtggaaa gatgccttag
      241 agcaaactaa aaaacataaa gctcatcttc ttatagcggt gctaagtcaa gatcaaagca
      301 aattagaaca agctaaaatg tttacgaaaa ttgcagcttt atgtttggat aataaacatg
      361 ctttaggttt ttatacaggt gcagttgttt tagagcccag tttttatata gaaaatgcaa
      421 aaatgttaga tgataatcgc ttgccggtat ataattggat atatgttagt gtttatccta
      481 gtgaaaatgg agttaatgct tatacttatg ggcttagaaa ttttgataaa ttagaacttg
      541 aagtttgtga tttaaacata gaagaaaaag aacttttctt ttatatttat gatattgttt
      601 tgcatatttt aacttatgat attaatctaa aagataaaga tattttaaaa tttgaagatg
      661 gaaaagaaat aaaatttata aaaagtcaag gtataagtgt tgagaatgaa agcttgaaaa
      721 ttatttttta agtttcacat tcacttcaca gttttgagtt aaactttcgc caaccaagaa
      781 aaaaaggaga aattatgaaa gcaaaactaa ctttacttgc tttgttgggt actacggtgc
      841 ttttagctaa agatatggtt gttcctgcta gcgaacttcc aaataatgcc aaagaattta
      901 tttctaaaaa ttttaaaacc gctcaaattg gtttggtgaa aaaagatata gattcttatg
      961 atgtgatttt aaatgatgga actgaaattg attttatgat caatggagag tggaaagaag
     1021 ttgatggaaa atataaggct ttgccacata ctatcttacc taatgttatg aaaaaagtga
     1081 gtgcaactca atcaaatgct caaattcttg aagtagacaa agaaattaat ggttataaat
     1141 ttaagtttaa taacaatatg gaagtttata cagatatgca aggaaatatc ctaggtcaaa
     1201 aattagatta atttttgaaa atttaactcc cttagaaaat ttgatgcaaa aatttggaag
     1261 catagtcttc caaattttta ttttttgatt gcaaaaccca aaatatattt agttttaaaa
     1321 taatacttta ttgatacaag tgattgtttt tttataaaat taaatttaca aaatgttaca
     1381 taagatttaa aatatttttt ttaaaaaata attatttata aatattttgc taaaataaaa
     1441 gagatgtaat cttaaattta aggaagaata atgaatactc ctaaatggac tagtcacgat
     1501 acaaggtggg ttttatctct ttttggaaca gctattggag ccggcgtact tttgttacct
     1561 attagtgctg ggcttggtgg attgatacct ttgttagtta tacttgtttt agcttttcct
     1621 atgacttact tagctcatag aaatttatgt cgctttgtgc tttcaagttc taatccaaaa
     1681 gatgatatta cttttgttgc agaaagttat tttggcaagg gcggtggatt tttaattaca
     1741 cttttgtatt tttttgctat tttgcctatt ttattggttt atagtgctaa tcttacaaca
     1801 actttgcttg agttcttaat caatcagttt aatttcaatg cagatcttac tcatgctgct
     1861 cgttggtggg tgagtttttt gattgttgga gttttggttt tgatttctat tcttggtgaa
     1921 aatgttgtaa caaaagcaat gagttttctt gtttttcctt ttattatatt tttatttatt
     1981 ttttcattgc ttttaattcc acaatggaat ttatcgttat ttgcaaatgt tgatttttcc
     2041 gtaatttcaa caagtaattt ttgggttact ttatggcttg ttattcctgt gatggtattt
     2101 agttttaatc actctcctat catttcttca cttgcttgtt attgtaaaaa agaatatggt
     2161 ggttatgctg aacctcgcgc tagaaaaatt atttctttag caattattct tatggttttt
     2221 gttgtaatgt tttttgtttt ttcttgtgct ttaaccttta caccagaaga ttttgcatca
     2281 gcaaaagatc aaaatatcaa tattcttact tttatagcaa ataaatttcc tgaagtttct
     2341 ttactagctt atgttggacc tattgttgca cttgtagcta ttagcaaaag tttcttaggg
     2401 cattatcttg gttctcaaga aggcttaaat ggtattttat ataaagcaag taatggtaga
     2461 attcaaggta aattcgctca aactttaaca gcgatcatta cctttgctat cgcgtggttt
     2521 gttgcgtata aaaatccaag tgttatagga attatcgagg ctattggtgg tcctgttttg
     2581 gctattttgc ttttcttaat gccgctttat tgtatttatc gttttgatat tttggcaagg
     2641 tttcgtaata aatttttaga tctttttgtt ttggtaatgg ggatagttgc aatttctgct
     2701 gcaattcatg atcttttata aattaaggat aaaaaatgag taatttaagc atttttaaaa
     2761 taggtgttgg cccttcttct tctcatactt tagggcctat gcttgctgga aatttatttt
     2821 gtaaaaaagt tgctaaaaag cttgatgaaa ttgatagagt tgaggttact ctttatggtt
     2881 ctttgtcgtt aacaggcaaa ggacacttga gtgataaggc tgtgatttgg gggttaaatg
     2941 gcttagaagc taaaaattta agtgcggcaa tacaagatga agtaaataaa aatgctattg
     3001 aaaatgctca aattgatttt tgtggtgaga aaaaactttg ttttaattat gaaaaagatt
     3061 tgatattttc caaagatttt ttacctttac atgagaatgg tatgaagatt aaagcttatg
     3121 attgtaaagg tgggttagtt gatgaggaaa cttattattc tgtaggtgga ggctttgttt
     3181 taacagctgc ggaattagaa aaaaaaggta aaaattctaa ccaaaataaa aagaaaaaac
     3241 tagatataga gcttaataac gctaaagaag ctttagagct ttgcgataaa agagattggg
     3301 atttagcaga gctttcctat cgttatgaat tgcaatttca cactaaagag gaaattcgtg
     3361 cttattgtct tgaaatttgg gaagtgatgc aagaagtgta ttataatggt acgcatccaa
     3421 atgaagatta tttacccgga aaacttcatt taaaacgtag agctaaaggg cttaaagaaa
     3481 gagtggcgat gacagctgat cctatgggca ttatagattt tatttcttta tatgctattg
     3541 cgattgctga agaaaatgct agcggagcaa aagttgtaac cgcgccaaca aatggagcat
     3601 gtgccgttat ccctgctgtt atgctttatc ttaaaaatca tactataggt tttagtgatg
     3661 aaaaagctat agagttttta ttaacagcaa tgcttatagg ttctttttat aagaaaaatg
     3721 caagtattag cggagcagaa gcaggctgtc aagcagaaat tggtagtgct agttctatgg
     3781 cagctgcggc tatggcaaca gttttagggg ttaatgcttt taaagcatgc aacgctgctg
     3841 aaatggcaat ggaacatcat ctaggtttaa cttgcgatcc agttgcagga cttgtgcaaa
     3901 ttccttgcat agaaagaaat gcctttggag ctattaaggc tataagtgct gctagaatgg
     3961 caatgacacg taaatctact cctatggtaa gccttgatga ggttatagaa accatgtatg
     4021 aaacaggaaa agatatgaat tataaataca aagaaacttc tttaggtggt cttgctacaa
     4081 atttaaaaac agtatgctaa agtgttttta cactttggtg tattttttca ttcttagact
     4141 taaaaattct ttcatttctt ctttggaaaa acttttaaga atacgaattt gcttaaaaag
     4201 caagccaaga ttgattgctc ccatcactaa aagcaataag caaatcatta aaaaaacaag
     4261 atctatgact ccaaattcat taatcatagc caaacttgca aaaaatacgc tcgctaataa
     4321 caaaaaaaat aaaagcaata tttgttttaa ttttgcctca ttaaaattat cgcaattttg
     4381 agtgaaattt ctaaaaagta tgatcttttt acccaaattt gaaactaaaa tttcatcatt
     4441 ttctttaaat aagccttctt ttaaactttg ataaaaaaag atttcattat ttaaatttaa
     4501 agcatctttg tagcttgata aggtgtagtc tttgtaaaaa aaggatttta attcattttt
     4561 cttttctatt ttaaataatc ttaaatcatt tctcgcataa aaaaatccac taaagttcat
     4621 aaatgccata agtatcactc cctaaaaaat tcctataaag tggcttgaaa tttaaaggta
     4681 ttgtaacatt tttttcatca tttaaacttg aactttggaa aatcaaaaac atatctattt
     4741 catctttaaa ggttttgaga aaattttctc caccctcata cattaaaaat ttagcttcac
     4801 ttggaatttg ggtataaatt tggcggtttg gaactttaaa taaagggata tttttatcaa
     4861 aattatctat attttgacgg cttaagatac aaagattagg cgcttttgct ttgcaaagcc
     4921 tagcatctag tatagggtga tcttttctta tggtttctcc accgactaca agcaaatcaa
     4981 tcaccgctct aattttatgt gcataagtgc gacttagctc attgcttacg attttgccaa
     5041 aaggtgagcc gttcatagaa agggctaatt taaaaagttt aaattgccct ttttgccatt
     5101 ttaaaaaagg ttttaaaagt ttttttcctt cttctttaag tatgtcaaat tcaacctcta
     5161 taccttgttt ttttaaaaat tcagccccac cacttgcgat tttatttcca tctttaacgc
     5221 tgatgaaaat ttttttaaaa cctagctcgc taaagagttt tgcacaagga ggcgtttttc
     5281 cttgatgaga gcaaggctca agtgtgacaa aagctatgct atctttaaat acaccttgat
     5341 ggtttttgca aataaactca tgcaaggcgt ttgcttcttt aggcaatgaa atttcaggtc
     5401 ttaagttttt aaaagcatga gctatggcat taagttccgc atgagctaat ccagcttttt
     5461 catgagcttt tatggctaaa attttttcat ttttatctaa gattacacag cctacagccg
     5521 gatttggata ggttaaaaac tgatatttcc aagcctcatt taaagctaaa ttcatataaa
     5581 attctttcat ttgcctacct tgtattttaa aatttgacat atttttaaaa ttttatattt
     5641 ttgttttaag ataacaaatt ctaaattttc catttgtatt tcttattttt aattatatta
     5701 gccatagttt ttctaagttt ttttaggata taacaaaaat agtaagaccg aagtattatt
     5761 tttcatttgt aatatccttt ataatttcag gaatgatata agcttgataa actagaaagt
     5821 cttggtggcc gggagaaagg gattcgaacc cctggaggtg tgaccctcaa cggttttcaa
     5881 gaccgccgct ttcgaccact cagccatctc ccgataaagt aaagttttgc cttttggagg
     5941 cgacatccgg attcgaaccg gagatcaagg ctttgcaggc ccatgcctta ccgcttggct
     6001 atgtcgccct gataatgttg aaaaagtggt gcccgaggcc ggacttgaac cggcacggaa
     6061 gaaaaattcc gagggatttt aagtcccttg tgtctaccaa ttccaccacc cgggcgggtg
     6121 attatggagc gggaaacgag attcgaactc gcgaccccaa ccttggcaag gttgtgctct
     6181 acccctgagc tattcccgca taaatttctg aaagaattga agataaaagt atagcaaaat
     6241 aaacttaaaa ggagtttatt ttgccttaag ttatttgcaa ataaataaag ctttcgcgct
     6301 taaaatttgt tctttttcgc tgataattgg agatgaaagt tctatattgt cagattttgc
     6361 atttaacatt ctaggtgcga tattggcatt tgtatttact tgtaaatttt tcaatacaca
     6421 agttttatta agatctaaag agtaagtttt ttcatattcg tatgatgttt ttaaaagctc
     6481 tttgtagaga ttttctttgt tgttgtttag tgtatctttt gaaaattttg tttgtatggc
     6541 tggtgttgaa acgctgatga aattattttt agctatgata gaattgatgt catttaaaag
     6601 cttgttaaaa tctgcaagtt ggttttcttt aaattcacat tctaaattcg catcaaatct
     6661 ttgacctttt ggagtttgta taccatcttt ataggaaaaa ttaggttcta aagaaaaact
     6721 tcctccgcta caaaaatttt ctttttttga gcgttctaaa atttgattga aagtatttgt
     6781 gatttcagct ttttcactat tgtctaatgt aatttttgaa cttaaatttt catttgccca
     6841 aaaattaata tttgcatata aaatatcggg ttttagcgta ttgcttactt ctatatttct
     6901 tgaaaaatat aaatcatgat tagagtcttt tttgcctaaa aattctacat taaaaaccac
     6961 gcctgcaaca aaaagtaata aacataaaaa acctacacct aaacctttaa aaaaagctaa
     7021 catggatatc cttaataatt taatttgagc taattttagc aaaaaatttt aaaatttttt
     7081 gttatactct catttatgca aaaaaaagag cttgaaaaac tacaagaaaa tttacttctt
     7141 tggtatgaaa aaaatggacg caaaactttg ccttggcgta atttacaaag tcaaaattgt
     7201 gatgaaagtt taaagcatat tgatagagct tatggggttt atatcagcga aattatgctt
     7261 caacaaactc aagttaaatc agttttagaa aggttttatt tccccttttt gcaaaaattt
     7321 cctactttag aaagtttggc taatgctaat gaagacgagc ttttaaaggc ttggcaagga
     7381 cttggttatt acactcgtgc tagaaattta aaaaaggcag ctttagaatg cgtggataag
     7441 tttggggcta aattacctaa agaagttgag gatctaaaaa aattaagtgg tataggagct
     7501 tatacagcag gcgctatagc ttgttttggc tacgatcaaa aggtttcttt tgttgatggc
     7561 aatatacgcc gtgtgctttc tcgtcttttt gctttggaaa atcctagcat gaaagaactt
     7621 gaaaaaagag ctaaagagct tttaaattta aatcatgcct ttgatcacaa ccaagctttg
     7681 cttgatatag gggctttggt ttgtgtgggt aaaaatgcaa agtgtgggat ttgtcctttg
     7741 tatgattttt gtcaaggcaa atttcataca gagctttatc caagagctaa aaaaatactt
     7801 tatgagagtt taaatttaaa tctttttttg tttgaattta ataaaaaatt tgcgatacag
     7861 aaaagccaag ataagcttta taagggtatg tataattttc ctttttttaa agaaggagag
     7921 tataaacttt ctaaagatat gggttttgta ggggagttta agcacagcta tactaagtat
     7981 aaacttaata tcaaggttta tcatcaaatt ttaaacaatg aaaataaaaa ttataaattt
     8041 aaaaccttaa aagagttaga aagtaccgca ctttcggcac tttctttaaa agcgttaaaa
     8101 ttaattaagc tctgattttt taggcaaaca taaagtagct ataagcatga tgattgtaaa
     8161 aatagctata tatataaaaa agccattttc tatacctgca tttttaaatt gtaaagcaac
     8221 ccaaggagca gatcctccaa aaacagcatt tgaaatagca taacccaaac ctgtccctaa
     8281 agctcttaca tgttcaggaa aaagttttgc tttaaaaatc ccagcaactg aagtataaaa
     8341 acttaaaata acaaacaata ataccaccaa cataaatgtc aaagaaggat tattttgtgc
     8401 gttattggct ataagtgaaa aaataggata aattcctacc aatgccaaaa tacaaaatac
     8461 aattaaagat cgtttgtgac ctattttatc tcctatatat ccaaaaagag gttgaatgat
     8521 cattagtata aataaagcac ctaagaaaag attattaaca agcattttat ccatacccgt
     8581 attttccata aaagttttag tataagttgt aatagtataa aaagctaaag aacctccaga
     8641 ggtaacccca agtaccatta aaaaaggttt ccaagatttg cataatgcct ttaaagtacc
     8701 acgatcttca tgctggtgaa gttttgtagc actttcattc atcatttttc ttacaaaaag
     8761 cgagcctagt gctaaaattc cgcctattgc aaaaagtatt ctccaagcat aatctttcat
     8821 atcatcaatg ctaaaaaata aaaacattat actaatgctt gcaacggcca aaagttgacc
     8881 acctattagg gttacatact gaaaagatga gtaaaaaccg cgttttcctt ccgtagcaag
     8941 ttctgaaaga taagtagctg ctatgccata ctccccgcct acactaagac cttgaataag
     9001 tcttgctatt aaaagcaaga taatagcaag atcgcccact gtatctttgc ttggtaaggc
     9061 tgctatcata aaagagccca aagccattaa aaccactgat ataaccatag atttcttacg
     9121 acctacttta tcagccaaag aaccaaaaag ccaagaacct ataggacgca taaaaaatcc
     9181 tgctgcaaaa actccaaagg cattgatttg ctggataaca ggattatctg aagttgaaaa
     9241 agtatgagca aaataagttg ctgtaaaagc atagatataa aagtcaaacc actctactaa
     9301 atttccgcta cttgcagcaa taatagagcg aatttttttc gtgcgagtaa gctcttgcat
     9361 aaacccttcc ttaattttag atttttattt aagtatagtg tgatttttgt ttaatatatt
     9421 taaaaataaa gaagagaaat aaaaaagata aaaatatcga taaaaatgtt acatatttta
     9481 ataaatttca taaattttgg taaaatgttt actctaggaa atataatgaa atttaaaaaa
     9541 atatatatag aattaagtga tatttgtggt ttaaaatgcg atttttgtcc ttctcgaaaa
     9601 ggaattcgcg gggtaatgag tgaagaaaaa tttcaaaact tagcttatga aatttctaat
     9661 aaagctgagc tttttacctt tcatcttttg ggcgatcctt tgcttttacc taatttggga
     9721 aattatctaa aaatcgcaaa agatgaagct atgaaacttg aaatcactac aagtggcttt
     9781 tatctaaatt ctaaaaatca agctttattg ttagggtatg agaatatcca tcaaatcaat
     9841 atttctttaa tgtctttttt aagtcaaagc aaaatttctt tagaacagta ttttaagcct
     9901 attttagaac tttgcaaaaa gcatttagag caaaaaagcc tttcttttat caatctaaga
     9961 ctttggaatt tagatgctaa ttttaaagca cctaagtcaa atttaaaaat ttatgagttt
    10021 ttagccaaag aatttgaagc taagatcgat gcaaacttaa gtaaaaatcg cttacaaaga
    10081 catattttgc ttcatcaaaa taaacttttt aaatggccaa atttaaaaga taaacccctt
    10141 tataaaaaag gaaaatgcca tgctttaaaa gagcaaattg ggattttaag tgatggaagt
    10201 ttagtgcctt gctgtttgga tactaaagca gatattaact tgggaaatgt ttttgaaaat
    10261 aactttgata agctttttaa atcaccgcgt ataaagatga tgaaaaaagc ttttgaagaa
    10321 gataaacgca tagaaaaact ttgtcaaact tgcgaatttt ttaaagcaag attgagtgat
    10381 taaaaattgt tattttctag ctttgtttta aattcttgaa ttctatctat tatcttagga
    10441 ctaagacgta ataatatagg tgtatctttg ttaaaataaa tacttcctgt tttaactgct
    10501 ttggtatttt tcaataaagc atttgtatct aaaagattgt ttttagcatt aattccaaga
    10561 atgagtatat ctggattttg tttcagtata tattctgctg atataacagg tcttgaaatt
    10621 tgactttgcg gacttaaatt tttaatccct ataagtctta aaatatcagc tattaaagaa
    10681 ttatcattaa aggccattaa agggttgcta gaataaagat aaatcgcact tttatttagg
    10741 ggtttatcgc ttaatttttt taaattttga gcaaattctt gttttaaaag ctctgcttct
    10801 ttttcttttt tggtgatttg gcctaaggtt gtgatatttt ttgttatatc ttctaaacgc
    10861 tcggctttta aattgatact tttgatacca aaatttttaa gtccttcttc taaatttaaa
    10921 gaataagagc ttaaaatcac caaacttggt tttagtgcta ctattttttc aagtgaagga
    10981 tttgaaaaag tgcctacgct tgtaagtttt gaggtttgat ctttaggata gatatttgag
    11041 tgttgtaaag tggcaatgcc tacgatttga tcttcagcct taagcataaa aagggtttct
    11101 atgcttgcag gatcaagcac tacaaggcgt tcttttgcat ttagtgtgat taaaaacaaa
    11161 ctcataataa ttaaaatttt tttcattttt tctcctttaa agctaaaata taaggtttag
    11221 aatttttata aataatctcg cagtttaaat cataaatttc ttttaaaatt tcttgagtaa
    11281 aaagctcttt actcgttcca aaatacttta tctccccttc ttttaaaaaa aggattttat
    11341 cgcagaacat agaagctaaa tttaaatcat gcaagatagc aacaacggct atattttttt
    11401 ctttaactag tttttcgcaa aggcttaaaa gctctatagc atagtttaaa tcaagggctg
    11461 aagtgggttc atctaaaaaa agaatttttg gctttttaag taaagctctt gctaaaagca
    11521 ttctttgaaa ttcacctccg cttaaagaaa gtatgcttct ttctagaaaa ttttcaagtc
    11581 ttaaatcttt agcaaatttt ttaatttcta aaatatcttc tttagaataa gaactaaaag
    11641 cgtgttttaa attcgcatat ttgctcatta aaagcacatc gatgactttt aaaggggtgt
    11701 ttaattctga tttttgaggc acaaatccgc aaattttggc aaattcttta agagaaaaat
    11761 ccttgatatt tgtgttaaaa agacttatca ctcctttatt tggacttaaa tttttaagta
    11821 taagttttaa aagagtgctt ttgcctgagc catttggccc taaaattcct ataaaagctt
    11881 ggtttttaag ttctaaatga atatttttta gtaaatcttt ttggtgataa gcaaagctta
    11941 aatcatgtat ttttagcatt ataaaaatct cctagcgctt aaagccaagt ataaaaaaat
    12001 aggagctcca aaaaatgcag ttagaattcc aatcggaatt tgcacaggag ctaaaagagt
    12061 tcttgctaaa gtatcacaaa taagtaaaaa taatcctcca aatgctgtac ataaagggat
    12121 aactaaggca ttattataat ttttaagcaa aagtcttata gcatgaggaa tgatgagtcc
    12181 aacaaagcct ataagtccgc taaaagcaac cgcaaaagat acagccaagg atgagacaat
    12241 gagtaaattt atctttaatt tttgagcatt tacccctaga tttctagctt catcatctcc
    12301 gcttaaaagt atgtttaatt cgtttttatg agcgtaaaaa taaaacaaac aaaaaattaa
    12361 aggcaagatt aaaattccca cacgaaacca agaagcattg cctatatttc ccataagcca
    12421 agcgactatt ttaaaagaat cctcgcctat aagataagtg aaaaaagaag tgaaagcccc
    12481 taaaaaagat gaagctgcta tgccgataat gagtaaagtt gctatagaag ctttagaaga
    12541 aattttaaaa actcctaggg caaaaaaggc agagcaaaca aaacctaaaa ttccataata
    12601 ataatcattc aattttaaca aatacgccaa aaccgctcca aaggttgccg cagaagctat
    12661 acctatgata taaggatcag ctataggatt tgaaaatgca ttttgagtga tagccccact
    12721 actagctaaa agcataccga ttaaaatcgc cattataatc cgtggtaagc gtccatctat
    12781 gattatttgt cttaaaattt catcttggct aaagatatat gaaaaaagct cttttgggtt
    12841 taaattctca tctcctaagc aaagtgctgt aaaagaagcg attatataag ctaccaaaag
    12901 ccctataatc actaaaattt tagaatgcgt atttaaattc aacatagtag tttctgccat
    12961 ttccaactag gtattgatca tttatactgt cttgataggt gtagtatctt ttatcgaaaa
    13021 gattgcgaat tcctgctaaa atttgtaatt ttttataatt atatttcatg ccaatatctg
    13081 ttaaaaaata atcccttatc caagaatttt tagacatttt tcctgtattt tcatctatag
    13141 tgccaccatc ttttgctcta gaaaaatagg ttaaatcaat aaaatttgag aaatttttat
    13201 tccaagcgta ttcaagccca gctgtggctt tgatttttga aacataagga attctcacgc
    13261 cgtcattaac acctttagaa attttagcat caagataagt tagactttct ctaaagatta
    13321 aatcatcatc taaaaaattt tgactcaggc ttaattctac tcctaaacgg cgagtttgat
    13381 ctatattata atatttccac caagatccac tagtagaatg agggtttcca agataagaaa
    13441 tttcatcttt gcttagggtg taaaataaag ttagattaaa gccgtaaaaa tcccaccaaa
    13501 aatcatcaat acctagttca aaggtatcaa agatctcagc ttttaggttc gacgaataat
    13561 agggtggtat tccattacca gttttgttgc gattgacaaa ttgagcaggt gtaggagaaa
    13621 caaaacctct ttcgtattta agataaagat tgcctgtgtc agagtattta aagttagggg
    13681 tgatttcaaa agcaaaatta ttggtgtttt tatcggtatc aaaaagggtt gttgagtctg
    13741 tgattatagg atttgatgat ggcggtcttc cgttcatact catttcattt ctataagatc
    13801 tattggtatt ataagtgcta aattcatatc tagctccacc ggataaagtg aaaaattcat
    13861 taaaattatg agaatcaaga gcgaaaatag aatggctttg tttagtcata tccattaaag
    13921 ttgtcatcct gtgataattt atgacacctg gaacgctata atacaccaaa ctctttcttt
    13981 ttgcatcatg gtttgtaaat tcataaccaa aaataaaata agaattattt gcataattta
    14041 gcttgttttt taaacttatc cctgtaagtg tgtcttcaaa accacttcca ttttgataag
    14101 ctgtagttcc catcatagaa atttcatctt ttagataatt gatcttttga ttttgccaaa
    14161 aagcttctag gttaaattcc catatatcat caaaatagta atgataatcc aaagaaattt
    14221 cagggcgatt gatttgtgtg atattgtcac tattgccttt ttgggttgga tcgctttgag
    14281 cttgtgcttt tgttagatag ccactgctgg tatttttgct tttaaaataa ttataaccca
    14341 aagttaagtc gctattatca ttgatatcaa tataggtttt tgtgttgata aaatagcctt
    14401 tttcattata acctttttga tatccatcaa ggttaaaact ttgtatatca aagctaaaag
    14461 ctaaattttc atttatttgt ttggcgccat tgatacctaa atttccacct agtccaccat
    14521 gattataggt actgcttttt aaatttatag caaaagcatc tgatttttgt ttttttgtaa
    14581 tgatattaat cacgccacct ctagtaccac ttccataaag cacagatcca cccccaggta
    14641 tgatttctat gcgttctaca ttatctaaat tgatactatc tagtggggtt acaccatggg
    14701 aattatcaag aacattaata gcatgcccat caatcataac ttttacagct atattggatt
    14761 tatttccttg tccacgcata tctatattgc gtccaagtcc aaaatttaca aaactaatgc
    14821 ccgaaattct ttctaaggct tgttctaaag aaacataacc tttattttgt agatctttgc
    14881 cttctatgct gattacattg cgtaaatttg aatccgcatc ttgttcaaaa cctgttgtac
    14941 taacaacaac tttttgtaga ttgatagctt tatttgattc ttgtgcattt aaattagtta
    15001 ttagcaataa tgcaaataaa gataatttaa aagctttttt atttgggtgc aaattttact
    15061 ccttaaataa aataaataat gataatttat atcataataa tttagaaata aatttatcct
    15121 ttattaactt aatctagtat aaatttttgt
//
LOCUS       DARGEY010000029        15097 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.029, whole genome shotgun sequence.
ACCESSION   DARGEY010000029 DARGEY010000000
VERSION     DARGEY010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15097
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.029"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..139
                     /locus_tag="SF008_000773"
     CDS             <1..139
                     /locus_tag="SF008_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG8233054.1"
                     /translation="FMNKKQIYKIFSKFISRKIFLIWLFFIRFISPIAIILVMCYQIF
                     V"
     gene            171..1970
                     /locus_tag="SF008_000774"
     CDS             171..1970
                     /locus_tag="SF008_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin attachment protein"
                     /protein_id="HEG8233055.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFTMMDRFRAIVGKDANLQTLARGVNTVTLDTGNSELID
                     LHAKLFAKHGTTTIRNFDALNDVNNLKFSGECIVKHGLKHEITITLMDLPSNCKGAHD
                     VPFYEKILKEILTAEIPFHSICFKDASGTSNPNKIYKTIKMARKILPQDTHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTMMHALKGKDYDLGGLEEEKI
                     LRYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGPWKKIAEGYGKMVLGYFGKTPVTPD
                     ANIVELASKQLNLEPTTELAINIADKDESKSIAYTKTLLEKEGIETSEENIFIAAACK
                     EKGIAFLKGEAKVNIRKLASMPKPMSVDENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEILAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIILELCIKIGDTVNEGEVLAIYKN"
     gene            1983..3557
                     /gene="pckA"
                     /locus_tag="SF008_000775"
     CDS             1983..3557
                     /gene="pckA"
                     /locus_tag="SF008_000775"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HEG8233056.1"
                     /translation="MKKFDKLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKVNQPITKELFDKLLTKAKQELSGKKIYVQ
                     DVFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     YEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     ITKCEFENFEVFDLAIPKALEGVESVLLNPINTWLDKNAYIATRDKLAHMFIQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            3567..4949
                     /gene="argH"
                     /locus_tag="SF008_000776"
     CDS             3567..4949
                     /gene="argH"
                     /locus_tag="SF008_000776"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEG8233057.1"
                     /translation="MKNEMWSGRFSDASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVRSEIEQGKFIFDIKDEDIHMAVEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELIKLLKELIQTMLEHAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDIKRLQNSLELADFSPLGSCACAGTSYRTNRELSAEIL
                     GFKDIMLNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGIFDSV
                     KTAKDSLIILNAMLKEIQINKENMLNACKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEAQGIDISEIKDLSKIDPVFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(4971..6074)
                     /gene="ychF"
                     /locus_tag="SF008_000777"
     CDS             complement(4971..6074)
                     /gene="ychF"
                     /locus_tag="SF008_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEG8233058.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPERIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGAK
                     ESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVDENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(6071..7522)
                     /locus_tag="SF008_000778"
     CDS             complement(6071..7522)
                     /locus_tag="SF008_000778"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HEG8233059.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKIFNKEKDFFKLNNYKG
                     EGALLDLNNKKLYLELKSLAYDDIRLSLCTAYKTLEKLNIKSVKLPSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTSTLEKFIISSEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNIICKIYDEKFLAKEKMNAFLAVNRA
                     SIHPPRLIHLSYKAKNAKKRVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAVMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVVGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPYLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGAGGAGVRMCVNYLIQILRKAK"
     gene            complement(7519..8115)
                     /locus_tag="SF008_000779"
     CDS             complement(7519..8115)
                     /locus_tag="SF008_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8233060.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKRYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS"
     gene            complement(8134..8682)
                     /gene="apt"
                     /locus_tag="SF008_000780"
     CDS             complement(8134..8682)
                     /gene="apt"
                     /locus_tag="SF008_000780"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEG8233061.1"
                     /translation="MIKLTQEEKKYLLDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLRHLKERYKDYNLDFIAGTESRGFIFASMICAKLNLPFAPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLMN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            complement(8679..9011)
                     /locus_tag="SF008_000781"
     CDS             complement(8679..9011)
                     /locus_tag="SF008_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233062.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            complement(9011..9448)
                     /gene="rpiB"
                     /locus_tag="SF008_000782"
     CDS             complement(9011..9448)
                     /gene="rpiB"
                     /locus_tag="SF008_000782"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEG8233063.1"
                     /translation="MLREKIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCD
                     YPDYAHLLAEKIDERSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDA
                     NVLALGGRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
     gene            9613..10167
                     /locus_tag="SF008_000783"
     CDS             9613..10167
                     /locus_tag="SF008_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HEG8233064.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDVKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLTKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
     gene            10184..10972
                     /locus_tag="SF008_000784"
     CDS             10184..10972
                     /locus_tag="SF008_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEG8233065.1"
                     /translation="MEKKITPSELELNEFIKIINEMSGIDLTDKKNILALKLNKFLEG
                     TNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYFLRELAQLKEIIYYAKSLEKRVNIL
                     SAPCSSGEEVYSLALLAAQNFIKDMYILGVDINSSVIEKAKLGKYQGRTLQRLSESEK
                     RRFFLESEDKFYTINKNELCTCKFELCNVFEEKFSRLGKFDIIASRNMIIYFDHESKL
                     KLMERFHRILNDKGRLYVGNADLIPETIYFKKIFSPRGVYYEKV"
     gene            11108..11836
                     /locus_tag="SF008_000785"
     CDS             11108..11836
                     /locus_tag="SF008_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG8233066.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLLDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     IPSEFFSNPKTERARLFLGKILKN"
     gene            11858..12637
                     /gene="peb1A"
                     /locus_tag="SF008_000786"
     CDS             11858..12637
                     /gene="peb1A"
                     /locus_tag="SF008_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HEG8233067.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            12639..13391
                     /locus_tag="SF008_000787"
     CDS             12639..13391
                     /locus_tag="SF008_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8233068.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            13402..14061
                     /locus_tag="SF008_000788"
     CDS             13402..14061
                     /locus_tag="SF008_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8233069.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGVVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            14169..>15097
                     /locus_tag="SF008_000789"
     CDS             14169..>15097
                     /locus_tag="SF008_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEG8233070.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAYERIASGVLDELVVTDTIPLK
                     EQLPNIKVLSVTPVFAEVIRRVYHNESVNSLFI"
BASE COUNT         5148 a         2073 c         2627 g         5249 t
ORIGIN      
        1 ttttatgaat aaaaaacaaa tttataaaat tttttctaaa tttataagtc gaaaaatttt
       61 cttaatttgg ttgtttttta ttcgttttat atcgcctata gcaataattt tggtaatgtg
      121 ttatcaaatt tttgtataat aatgaaaaaa tattttttta aggaaaaata atggctaaaa
      181 aattcatcga tgtaatggat acaagcttta gggacggttt tcagtctgtt tatggagcta
      241 gggttttaat ggatgatttt tttcctgcag tagaagcagc aaaagaagcg ggtattactc
      301 attttgaatt tggtggtggt gctagatttc aaagcttgta tttttatctt aatgaagatg
      361 cttttaccat gatggataga tttagggcta ttgtaggaaa agatgctaat cttcaaactt
      421 tagcaagagg agtcaatacc gttactttag atactggaaa tagtgaactt attgatttgc
      481 atgcaaaact ttttgcaaaa cacggtacta caacgataag aaattttgat gcccttaatg
      541 atgtaaataa tttaaaattt agtggtgaat gtatagtaaa acatgggtta aagcatgaaa
      601 ttactattac tttaatggat ttaccgtcaa attgcaaagg tgctcatgat gtgccttttt
      661 atgaaaaaat tttaaaagaa attttaacag cagaaattcc ttttcatagt atttgtttca
      721 aagatgcaag tggaacttct aatccaaata aaatttataa aaccattaaa atggctagaa
      781 aaattttacc tcaagataca catattagac ttcatacgca tgaaaccgca ggggtgagta
      841 tagcttgcta tcttgcagcg cttgaagcag gggttgatgg tattgatttg gctgcagctc
      901 ctgtaagtgg tggaacttct cagcctgata ttttaaccat gatgcatgct ttaaaaggca
      961 aagattatga tttaggtgga cttgaagaag aaaaaatttt aagatacgaa gaagttttaa
     1021 aagattgttt aaaagagtat tttttaccac ctgaagctac tatggtaaat ccacttattc
     1081 ctttttctcc tatgccagga ggagctttaa cagcaaatac acaaatgatg agggataata
     1141 atattttaga taaatttcca caggtcattc atgctatgag agaagttgtg gaaaaaggtg
     1201 gatttggtac ttcggttact ccagtttctc aattttattt tcaacaagca tttaataatg
     1261 ttatgtttgg gccttggaaa aaaatcgcag aaggttatgg aaaaatggtg cttggttatt
     1321 ttggaaaaac tccagttaca cccgatgcaa acattgttga acttgcttca aaacaactta
     1381 atttagaacc cactacagag cttgctatta atatagccga taaagatgag agtaaaagca
     1441 tagcttatac taaaaccttg cttgaaaaag agggtataga aacgagtgaa gaaaatatat
     1501 ttattgcagc agcttgtaaa gaaaaaggta tagcattttt aaaaggagag gcaaaggtaa
     1561 atatacgcaa attagctagc atgccaaagc ctatgagtgt agatgaaaac aaatttactg
     1621 tagctgtaaa tggtaataaa tatcatgtgg aagtgagtta tggttttgat aaagatgtta
     1681 atgttaagag tgtaaaaaaa gtagaagaaa ataaaaatat tatttcttca aattcaacaa
     1741 gttctgtcga tgctgaaaat gaaattttag caggtatttc aggtaatgtc tttaaaattt
     1801 atgttaacga aggcgaggaa gtaaaatcag gtcaagctat catggtttta gaagcaatga
     1861 agatggagat tgaggttaat gccccaaaag atggaattat tttagagctt tgtattaaaa
     1921 taggtgatac tgttaatgaa ggcgaagtat tagctattta caagaattaa agtgagggaa
     1981 aaatgaaaaa atttgataag ttaggtttgg ataatataaa ggaaattttt cataatttaa
     2041 gttatgatga attaaatgct catgaaaaag caaataatga aggtttaagc acggataatg
     2101 atactttttg tgtagataca gggattttta caggtagaag tcctaaagat aaatattttg
     2161 taaaacaaga tccatctagt aaatatatag cttggggaaa ggtaaatcag cctattacaa
     2221 aagaattatt tgataaactt ttaactaaag caaagcaaga attaagcgga aagaaaattt
     2281 atgttcaaga tgttttttgc ggtgcttctt tgcaaagtcg caaagcagta agatttgtta
     2341 ctgaaattgc atggcaagcg cattttgtta aaaatatgtt tattcgccca agtcaagagg
     2401 aacttgagaa ttttaaagca gattttattg tttataatgc ttgcaaatgc atcaatgaag
     2461 attacaaaca agatggttta aattcagagg tttttgtgat ctttaatgtt gaagaaaata
     2521 tagcggttat tggtggaact tggtatggtg gagaaatgaa aaaaggtatt ttttctatga
     2581 tgaattattg gttgccacta gaaaataaac tttctatgca ttgtagtgca aatgtcggag
     2641 aaaaagacga tgtggcactt ttctttggac ttagcggtac aggaaaaact acgctttcaa
     2701 ccgatccaaa aagaagactc ataggtgatg atgagcatgg ctgggatgat gaaggtgtgt
     2761 ttaattttga gggcggttgc tatgcaaaaa caatcaatct tgatcctgaa tatgagcctg
     2821 aaatttatgg agccattaaa agaaatgcac ttttagaaaa tgtagtttta agagctgata
     2881 agagtgttga ttatgctgat gcctcaaaaa cagaaaacac gagagtttct tatcctatag
     2941 agcatattga aaatcatgag cctagtctaa aagcagggca tccaaaaaat attatatttt
     3001 taagtgcaga tgcttttgga attttacccc cggtaagcaa actaagcaaa gagcaggcta
     3061 tgtattattt tttaagtggc tatacagcaa aagtagctgg aactgagcgc ggtataacag
     3121 agcctcaagc aactttttca gcttgttttg gagaaccttt tatgccttta catccaacgg
     3181 tttatgcgag attgcttggt gaaaagattg aaaaacatga agttaatgtt tatcttgtta
     3241 atacgggttg gagtggcgga agctacggtg tgggtaaaag aatgagcatt aaggctacta
     3301 gggcttgcat taatgctatt ctagatggaa gtattacaaa atgcgaattt gaaaattttg
     3361 aagtgtttga tttagctatt ccaaaagctt tagaaggtgt agaaagtgta cttttaaatc
     3421 ctataaatac ttggttagat aaaaatgctt atattgcaac aagagataaa ttagcacata
     3481 tgtttataca aaattttaaa cgttatgaag atgtcaaaga aggcattgaa tttagcaaat
     3541 ttggaccaaa aatttaaggc atttaaatga aaaatgaaat gtggtcagga cgttttagtg
     3601 atgcaagtga tgagctttta aaagaattta atgcaagttt aaatgtagat aaaactttgt
     3661 tcaatgaaga tatacaaggt tctatagcac acgctacaat gcttgaaagt tgtggtattt
     3721 taaaaaaaga agaattagat gctattataa aaggtttaga gcaggttaga agtgaaatag
     3781 agcaaggtaa atttattttt gatattaaag atgaagatat tcatatggcc gtagaaaagc
     3841 gtttaagcga gattataggt agtgaaattg gtggaagact tcatactgca agaagtagaa
     3901 atgatcaagt ggctactgat tttaaacttt ttgtcaaaaa atctcatatt gaacttataa
     3961 agcttttaaa agaattgatt caaaccatgc tcgaacatgc taaagtgcat aaaaaaacta
     4021 ttatgccaag ttttacacat ttacagcacg ctcagcctgt gagtttttct ttttatattt
     4081 tagcttatgc ttttatgtta atgcgagata ttaagcgttt gcaaaatagc ctagaactcg
     4141 cagacttttc gccacttgga tcttgtgcat gtgcaggaac aagctataga accaatcgtg
     4201 agttgagtgc tgaaatttta ggatttaaag atattatgct aaatgctatg gatggagtga
     4261 gtgataggga ttttgctctt gatttgcttt atgatatagc agttattttt acacacacat
     4321 caagactttg cgaagaaatg atcttatttt caagttcgga gttttctttt ataactataa
     4381 gtgatagctt ttcaacagga agttctatta tgcctcagaa aaaaaatcct gatgtttgtg
     4441 agcttatacg tggaaaaaca gggcgtgttt atggaaattt gatttctctt ttaactataa
     4501 tgaaagcttt acctttagcc tataataaag atatgcaaga agataaagaa gggatttttg
     4561 atagtgtaaa aaccgctaaa gatagcttaa tcatcttaaa tgcaatgcta aaagaaatac
     4621 aaattaataa agaaaatatg cttaatgctt gtaaaaaagg tcatttattg gctaccgatt
     4681 tggcagatta tttggtgcgt gaaaaaaata ttccttttag aaaagcacat tttatagtgg
     4741 gaaatgttgt tgcacaagct gaagcacaag gtattgatat aagtgaaatt aaagatcttt
     4801 caaaaataga tcctgtattt gatgaaaaag ctatggaact tttaaatttt gaattttctt
     4861 taaattctaa gcaaagtgaa ggctcaagtt ctattgcaag cgtagaaaag caaattcaaa
     4921 ttttggaagg ttttattcaa aatttataaa tattgtttag gctattttgc ctaaacattg
     4981 aatctaaagt gcattacatc gccgtctaaa acgatatagt cttttccttc aaggcgtagc
     5041 tttcctgctt ctttggcgcc attttcgcct ttgtattgga tatagtcttc ataggaaata
     5101 acttcagctt ttataaagcc tttttcaaag tcattatgaa tcacgcttgc tgcttttggt
     5161 gctttccagc cttttttgat tgtccaagaa cgcacttcaa ctacaccagc ggtaaaataa
     5221 ctgatcagtc caagcttagc aaaagcagtg cgtatgattt gatcaagacc gctttcgtta
     5281 actcctagag agcttaaaaa ttcatgactt tcttcatcgc ttaatcctac taattcttct
     5341 tcgatttttg cacaaagctt gataacttca tgatcatttt ttttagcata ttcttttaaa
     5401 gcttttacat aatcattatc ttcactaata ccattttcat caacatttgc accataaatc
     5461 acctctttag cagaaagcag tcttaattcc ttgattaggg cttgataaat ttcactttcc
     5521 ttttcaggat aagaacttgc agctaagcct ttgtttaaat gatcaagtaa ggaatttgca
     5581 agttcgagac tttctttggc gcccttttga ttggctttgg cttctttggt gagtttttct
     5641 atttttttac tcagttgctc aatatctgct aaaataagct ctgtattgat aatttctaca
     5701 tcacgtaaag gatcaactcc accttcaaca tgggtaatat tttcttcatc aaaacaacgt
     5761 actatatgca aaataacctc agtttcacgt atatttgaaa gaaatttatt tcccaagcct
     5821 tcgcctttac ttgcgccttt aacaagtcca gcgatatcta caaattctat taaagaatgc
     5881 ataattcttt caggttttac tattttagca agttcattaa gtcttaaatc aggaacttca
     5941 accatggctt tattaggctc tatggtgcag aaaggatagt ttgcactttg ggcattttgt
     6001 gctttagtta aagcattaaa agttgttgat ttgccaacat ttggaagtcc tactatacct
     6061 acgcttaaac tcatttagct ttccttaaaa tttgaattaa ataattaaca cacattctaa
     6121 ctccagctcc acctgcgcca aaactagaat atccccaaga tttttctgta taagcaggtc
     6181 ctgctatgtc aagatgtagc catttatctt tatattcttt acgaataaat ttatctaaaa
     6241 ataaccctgc ggtaattgca cctccgtagc gactagaggc agtattacta acatcggcaa
     6301 tatttgattt tataagttct cttaagtaag ggttgaaatg taagattgtg gtatattctc
     6361 cgcttttttt agagcttaga taaaaatcat tttgcaattc ctcattattt cccataatag
     6421 cacttgtaaa ttctccaagt cctacaacac aagctccagt aagagttgcc atatcgataa
     6481 gtaaatcagg ttttaaatcc tgtgcaaaag aaagacaatc agctaaaacc aagcgtcctt
     6541 ctgcatctgt atttcttacc tctatgctta caccttcacg actgattaac acatcatcag
     6601 gcttataagc attgccgcct atcatatttt cagttgcgcc caaaatgcaa tgcacttcta
     6661 aatctaaagc aagttcagct acggctttta tgattcccat tactgctgct gcaccgcttt
     6721 tatcagcttt cattgtaagc ataaaatcag ctggttttaa gcttaatcca ccgctatcgt
     6781 aagttaagcc ttttccaaca aatacaacac gtttttttgc atttttggct ttatagctta
     6841 gatgaatgag gcgtggtggg tgtatcgagg cgcgatttac cgctaaaaag gcattcattt
     6901 tttctttggc taagaatttt tcatcataaa ttttacaaat aatgttttta ttttctttag
     6961 ctaaattttg cgcatcttct gccattttta aaggggtgta aatttcagga atttcattga
     7021 ctatattttt agtaaaattt gtagcattag ctaaaatttc tccacgctct aaacctatct
     7081 tagcttcatc tttattaaat ttcttaccat ttaattcttc gcttgaaata ataaattttt
     7141 ccaaagtact tgtttttttc tcgcttttat atttgtcaaa tttataagct ccaaaaagta
     7201 cgccttcaac taaagatgca aaacttctaa ctacacaatc tcctattatg ctaggaagtt
     7261 ttacgctttt aatattaagt ttctcaagag ttttatatgc tgtgcaaaga cttaatctta
     7321 tatcatcata agcaagactt ttaagctcta aataaagctt tttattgttt aagtctaata
     7381 atgcaccttc gcctttgtaa ttattaagtt taaaaaaatc tttttctttg ttaaaaattt
     7441 ttaaattttt atcctgtata aaaacaagtt caaagtctgc ttttatagca tctagttttt
     7501 tatcgtttaa ttcaaatttc atgatttttt ccttttatct ttaagtatag ctttttccat
     7561 ttgtttaaaa ccaaataata aaagggataa aaaagctata ataataatgg ctgcataata
     7621 ccaatgttct tcagcccaag tcaccatctt ccaaatttgt tctccaaaat accaagctag
     7681 aagtatagtg attgatgccc aaacccaagc actaaaaaga ttgataatag caaatttttt
     7741 tgcactataa cgcgtgattc ctatactcat aggtataatg gttctaaagc catacatata
     7801 gcgttgtata aaaataatag gccaaccaaa acgttgtaaa agtaggtgtg ctactgcaaa
     7861 tttacgcctt tgagttttta attttttttg tatgtagcgt ttattatatc ttcctatata
     7921 gaaataaatt tgatcaccta caaaaccacc aagtcctgct ataaatataa caaaacctaa
     7981 atttacatgt ccttgatgag caaaaatacc tgctaaaatt aaagctaact ctccttctaa
     8041 aatgcaccat aaaaaaataa taatataagc tagatctttg tattggtaaa gtaaattttt
     8101 taaaaattct tccatttgta cctttctata gttttaaatt tctaaaacac tataaactga
     8161 agtaagtttt tcaagtttat ttgctccatt taaatcttta agattcatta aaaaacaagc
     8221 ttcaacacat ttagctccag ctttttgaat gagttcatat gaagctatag ctgttccgcc
     8281 agttgctatt aaatcatcta caagtaaaac tcttgcattt tgaatatttt taaatgcatc
     8341 tttatgaagt tctactttat cgctgccata ttcaagatcg tattcgcagc taaaggtttc
     8401 aaaagggagt tttccaggtt ttctaatagg tgcaaaagga agattaagtt ttgcacaaat
     8461 catagatgca aagataaatc ctctgctttc tgttcctgct atgaagtcta gattgtaatc
     8521 tttgtagcgt tcttttaaat gtctaagtag aaaatttaaa gcttctttgt tatttagtag
     8581 agtggtgata tctctaaaaa taattccttt ttttggaaaa tcaggaataa tcctaatgct
     8641 atcaagcaga tatttttttt cttcttgtgt tagttttatc ataataatgc ctcgattttt
     8701 gcttctaatt ctttaattct ttgtcttagt ttgtcatttt ccaagcgata ttgagaattt
     8761 ctggttctta aagatgtaag gtctgctttg attttattaa gttcttctgt gagtatatct
     8821 atatttccaa gacttctttg aagttgaatt tgtagttttc taatgacaat ctcagtatca
     8881 tcaagattgt ttttgataaa atcttttgat gttttttctt tattaagtag agttttatag
     8941 taaaacaaca ttacaataag atagatagtt gcacaaatca atatagttaa aacaagccag
     9001 tttgtaaaca ttatattttt acctcaattt tttgaattct ttgcatatgt ctcccttctt
     9061 caaaaggagt ttgaatgaat ttttctataa tatctatagc taattcaacc ccgattaatc
     9121 ttccgcctaa tgccaaaaca ttggcatcat tatgccttct tgcaagttct gcacttaagc
     9181 tttcatgaca taatgcacaa cgaatgtttt tatgacgatt tgctgcaata gaaattccaa
     9241 ttccacttcc acaaataaga atgccaaagc ttcgttcgtc tattttttcg gcaagtaaat
     9301 gtgcataatc aggataatcg cagcttgcgc aagtgtttgt tcctaaatcg ttaaaaatta
     9361 tatttttttc ttttaaaaat acgcaaattt tttcttttaa ttcaaaacca gcatgatcac
     9421 tagcaatata aattttttcc ctaagcattg gcttcctaat tactatataa aataagataa
     9481 aaacctaatc ttatcatatt aaatcataaa aacagctttt ctttttttaa aaataagctt
     9541 tatttttctt tatatatgtt agaatcatgt gacaagaaaa ataaaatttc aataaattaa
     9601 ggggagaaga aaatgaagct catactcata ggatcttcaa caggtggtcc taatcagctt
     9661 aaatttcttt taaaggatat tgatgtaaaa aatacttgtg tagttatagc tcagcacatg
     9721 agtgccagtt ttattccatc ttttgtgggg caatttaata aagaagcttt tagtgaagtg
     9781 tgcttattga acgataaaga gatattaagc aataaaattt atatttgccc taaaaatact
     9841 attttatctg gaaatttaaa tattgtagcc gcttggcaag atgtggcttc aagctttaaa
     9901 ccgagtgtgg atttactttt tcattccgct gtttctttga caaaaacaaa taaaatactt
     9961 gctattattt taacgggcat gggagatgat ggcgcaaaag gtttatttga gctttataaa
    10021 acaggagtta gatgtttatg tgagaatgaa gcagatagcg tcgtttatgg tatgccaaaa
    10081 agagcaaaag atatgaatcc gcatttaaaa cctatgagct taaaagaaat taaaaaagaa
    10141 attgtaaatt ttattgatca ggattaataa taaggaaaat tgcatggaaa aaaaaataac
    10201 tcctagcgaa ttggaactta atgaatttat aaaaattatc aacgaaatga gtggtattga
    10261 tttaaccgat aaaaaaaata tactagcttt aaagttgaat aaatttcttg aaggaactaa
    10321 tactaaaaat ttttccgaat ttttgggaaa attaaaaagc aatagacaac ttaaacaaga
    10381 aactttagat tttgtaacca taggtgaaac ttatttttta agagaattgg ctcaattgaa
    10441 agaaataatt tattatgcca aaagcttaga aaagagagta aatatcctaa gcgccccttg
    10501 ttcaagtgga gaagaagtat attctttggc attattggct gcgcagaatt ttattaaaga
    10561 tatgtatatt ttaggcgttg atattaattc aagtgtgatt gaaaaagcaa aacttggaaa
    10621 atatcaagga agaactttac agcgattgag cgagagtgaa aaaagaaggt tttttttaga
    10681 aagcgaagat aaattttata ctattaataa aaatgagctt tgtacttgta aatttgaact
    10741 ttgcaatgtt tttgaagaaa aattttcaag attgggaaaa tttgatatta tagcttctag
    10801 aaatatgatt atttattttg atcatgaatc aaaactaaaa cttatggaga gatttcatag
    10861 aattttaaat gataaaggaa ggctttatgt tggcaatgct gatttaattc cagagactat
    10921 ttattttaaa aagattttct ctccaagagg tgtttactat gaaaaagtat aaattctaaa
    10981 aattactaaa agttacactt tggaaattta ttagtaaaaa taagttacat tttgaagtag
    11041 ttttctttat ttaatgataa aataatttca attaatttta tatttagtta aaaataaagg
    11101 aaaaaacttg attgaattaa aaaatgtaaa caaatactac ggaactcatc atgttctaaa
    11161 gaatattaat ctttctgtta aagaaggtga gaagcttgtt attataggtc caagtggaag
    11221 tggaaaaagt acaactatcc gttgcatgaa tgggcttgaa gaagttagtt caggagaggt
    11281 cgtagttaac aatcttgttt taaatcataa aaataaaatt gaaatttgcc gaaaatattg
    11341 tgcaatggtt tttcagcatt ttaatttata tccacatatg acggttttgc aaaatttgac
    11401 cttagctcca atgaaacttc aaaaaaaatc taaaaaagaa gctgaagaaa cagcttttaa
    11461 gtatttaaaa gttgtaggtt tgctggataa agcaaatgtt tatccagcaa ccctttcagg
    11521 tggacaacaa caacgcgttg ctatagcaag atcactttgt actaaaaaac cctatatttt
    11581 atttgatgaa cctacttcag cccttgatcc agaaaccata caagaggttt tagatgtaat
    11641 gaaagaaatt tcacatcaaa gcaatactac catggtggtt gttacacacg aaatgggttt
    11701 tgcaaaagaa gtagcagata ggattatttt tatggaagat ggtgctattg tggaagaaaa
    11761 tattcctagt gaatttttct caaatccaaa aactgaaaga gcgcgactct ttttagggaa
    11821 aattcttaaa aattaaccaa aattgaaagg agaaaaaatg gtttttagaa aatctttgtt
    11881 aaagttggca gtttttgctc taggtgcttg tgttgcattt agcaatgcta atgcagcaga
    11941 aggtaagctt gagtctatta aatctaaagg acaattaata gttggtgtta aaaatgatgt
    12001 tccgcattat gctttacttg atcaagcaac aggtgaaatt aaaggtttcg aagtagatgt
    12061 tgccaaattg ctagctaaaa gtatattggg tgatgataaa aaaataaaac tagttgcagt
    12121 taatgctaaa acaagaggcc ctttgcttga taatggtagt gtagatgcag tgatagcaac
    12181 ttttactatt actccagaga gaaaaagaat ttataatttc tcagaacctt attatcaaga
    12241 tgctataggg cttttggttt taaaagaaaa aaaatataaa tctttagctg atatgaaagg
    12301 tgcaaatatt ggagtggctc aagctgcaac tacaaaaaaa gctataggtg aagctgctaa
    12361 aaaaattggc attgatgtta aatttagtga atttcctgat tatccaagta taaaagctgc
    12421 tttagatgct aaaagagttg atgcgttttc tgtagacaaa tcaatattgt taggttatgt
    12481 ggatgataaa agtgaaattt tgccagatag ttttgaacca caaagttatg gtattgtaac
    12541 caaaaaagat gatccagctt ttgcaaaata tgttgatgat tttgtaaaag aacataaaaa
    12601 tgaaattgat gctttagcga aaaaatgggg tttataatat gaatgaaagt gtaggttttg
    12661 ttgaacattt aagacaaatt cttacttctt ggggtttata tgatgaaaat agtataagcc
    12721 cttttgcggt atggaaattt ttagatgctt tggataataa agatgctttt attaatggtt
    12781 ttatttatac tttagaagta agcattcttg ctttgcttat agctacaatt tttggaacta
    12841 taggcggagt tatggctaca agtagattta aaattatcag agcctacact agaatttacg
    12901 tagagctttt tcaaaatgtt cctttggtaa tacaaatttt ctttttgttt tatgccttac
    12961 ctgttttagg tataaggctt gatatattta ctattggtgt attgggtgtt ggggcgtatc
    13021 acggagctta tgtaagcgag gtggttagaa gtggaatttt ggctgtgcca agaggtcagt
    13081 ttgaagcttc tgcgtctcaa gggtttactt atattcaaca aatgcgttat attatagtac
    13141 ctcaaaccat tagaattatt ttaccgccga tgacaaatca aatggtaaat ttaattaaaa
    13201 atacctctgt attgcttatt gtaggtggag ctgagttaat gcattctgct gatagttatg
    13261 cagctgatta tggaaattat gcgccggctt atatatttgc agcggtttta tattttataa
    13321 tttgctatcc tttggcttat tttgcaaaag cttatgaaaa taaattaaaa aaagcacatt
    13381 taacgagata aagggttgtt aatggaaaat gtttttaatg cacaaaatat tgaattttta
    13441 atgcaaggtt tatttctgac attaaaaata gccttagcaa cttgtattat ttcgattgtt
    13501 tttggaactt ttttagctat aactaaaaat tatggggata gattaagtaa atttttagca
    13561 gcttgctata tagatatttt tagaaatact cctttattat tatggatgct tgcagcttgt
    13621 tttgttctac ctgtattttt tggacaattt cctcaagctt tttggggtac tataggattt
    13681 tcactttata cgagttcggt tatggctgaa attattagag gtggattaaa ttctatacca
    13741 aaaggtcagt ttgaagcagc ttattctcaa ggttttggta aattttttac tcttttttat
    13801 attattttac cacaaacttt tagaaaaata atacctgctt tattatctca aattgtaacc
    13861 actgtaaagg atacagctta tttagcgggt ttaggtatag ctgaacttac ttataattca
    13921 aaaactatat tggcaaaact aacaagtttt gaagaaattt tagcgatgat aggtgttgtt
    13981 gcgggaattt attttataat atgtttttca ctttctatgt tggtaagata ttatgccaaa
    14041 aagacagctt acatttctta aaaaagctta tatttttata taagcttttt aaatttacag
    14101 cagtttttaa catttttttt attaaaatct tttgtattaa ttcataattt tattgattaa
    14161 ggttttttat gcgaggttat aaaatttttt caggctcagc taatgtcgaa tttgcaagac
    14221 aagtttctaa atatctctcc ctgcctttaa gtgatgctgg agtaaagcgg tttagtgatg
    14281 gagagattag tgttcaaatt gatgagagtg tacgcggaaa ggatgttttt attattcaaa
    14341 gtacttgcgc tcctacaaac gataatttaa tggaactttt aattcttaca gatgctttgc
    14401 gtcgctcaag tgcaaattca attacggcta ttatcccata ttttggctat gcgagacaag
    14461 atagaaaagc aaatcctaga gtgccaatta ctgctaaact tgtggctaat ttgattcaag
    14521 cagctgggat tgatcgcgta gctacgatag atttgcatgc aggacaaatt cagggttttt
    14581 ttgatattcc agtagataat ctttatggaa gtatagtttt taatgattac attaaagcca
    14641 aacattttaa aaatgctatt ataggaagtc cagatatagg gggtgttgca agagctagga
    14701 gtgttgcaaa gcatttagga cttgatatag ttatagttga taagcgtcgt gaaaaagcca
    14761 atgaaagtga agtaatgaat attattggag atgtaaaaga taaagaagtt atcttagtgg
    14821 atgatattat tgatactgct ggcactatag ttaaagccgc ggaagcttta aaagaaaaag
    14881 gtgcaaaatc tgttatggct tgctgtactc atgcagtttt aagtggaaaa gcctatgaga
    14941 gaatagcaag tggagtttta gatgagcttg tggtaacaga tactatacct ttaaaagagc
    15001 aattaccaaa tattaaagta ttaagcgtta cacctgtttt tgctgaagta atacgtcgtg
    15061 tttatcataa cgaaagtgta aattctctct ttattta
//
LOCUS       DARGEY010000030        15034 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.030, whole genome shotgun sequence.
ACCESSION   DARGEY010000030 DARGEY010000000
VERSION     DARGEY010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15034
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.030"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            22..819
                     /locus_tag="SF008_000790"
     CDS             22..819
                     /locus_tag="SF008_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG8233071.1"
                     /translation="MFNFITTLLKTNLYFLEEKTTSKSSNQTHIISLKQSDDEFLNLL
                     FSFLVPQSDEDKNFIEKTRTKIKRNEHNIALIKNPNFNALIDTGFLDTIDTLKEKLHI
                     HKTDFKDITHIILTHAHPDHIGALMSEENLFPKAQILIDKKEYDFWIKSDRQEIKNTL
                     LKLKNIEFINHSKDLIFQNSGIKAIPAYGHTPGQNAIIIDDKIVFWGDLLHLYDIQIP
                     KPKIAIKFDIDQNEAIQTREKLLKEFKERKLKVIGTHVPFIEPKFLD"
     gene            907..1125
                     /gene="infA"
                     /locus_tag="SF008_000791"
     CDS             907..1125
                     /gene="infA"
                     /locus_tag="SF008_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEG8233072.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            1297..1410
                     /gene="rpmJ"
                     /locus_tag="SF008_000792"
     CDS             1297..1410
                     /gene="rpmJ"
                     /locus_tag="SF008_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEG8233073.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            1413..1778
                     /gene="rpsM"
                     /locus_tag="SF008_000793"
     CDS             1413..1778
                     /gene="rpsM"
                     /locus_tag="SF008_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEG8233074.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            1788..2180
                     /gene="rpsK"
                     /locus_tag="SF008_000794"
     CDS             1788..2180
                     /gene="rpsK"
                     /locus_tag="SF008_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEG8233075.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            2208..2834
                     /gene="rpsD"
                     /locus_tag="SF008_000795"
     CDS             2208..2834
                     /gene="rpsD"
                     /locus_tag="SF008_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEG8233076.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     VVYRMGFATTRRFARQLVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            2847..3860
                     /locus_tag="SF008_000796"
     CDS             2847..3860
                     /locus_tag="SF008_000796"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEG8233077.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGESNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDTYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            3864..4217
                     /gene="rplQ"
                     /locus_tag="SF008_000797"
     CDS             3864..4217
                     /gene="rplQ"
                     /locus_tag="SF008_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEG8233078.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFASLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
     gene            4390..5289
                     /gene="hisG"
                     /locus_tag="SF008_000798"
     CDS             4390..5289
                     /gene="hisG"
                     /locus_tag="SF008_000798"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEG8233079.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCTLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYESRACLIQKENALSKEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            5297..6583
                     /gene="hisD"
                     /locus_tag="SF008_000799"
     CDS             5297..6583
                     /gene="hisD"
                     /locus_tag="SF008_000799"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEG8233080.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAISAKDEISKIVSSIIKEVQEKG
                     DEALIEQALKFDKAEISKIKITQEEITQASKHLDKDLQEAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALAYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGAAIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAK
                     KASDEVQSQLELLPRKELASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVTFRLESLK"
     gene            6580..7638
                     /gene="hisB"
                     /locus_tag="SF008_000800"
     CDS             6580..7638
                     /gene="hisB"
                     /locus_tag="SF008_000800"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HEG8233081.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLRFEKDAIPTLLKLK
                     KFGFKFVMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVHGLKYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKVSIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGVSLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            7635..8222
                     /gene="hisH"
                     /locus_tag="SF008_000801"
     CDS             7635..8222
                     /gene="hisH"
                     /locus_tag="SF008_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEG8233082.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKLFL
                     PGVGTAKEAMKNLEQFNLIDFIQNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKTKEGFTFPHMGWNEVYSSHALFKGLEGAYFYFVHSYCVGLGKYTIADCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGEILISNFIKDIG"
     gene            8219..8950
                     /gene="hisA"
                     /locus_tag="SF008_000802"
     CDS             8219..8950
                     /gene="hisA"
                     /locus_tag="SF008_000802"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEG8233083.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVGGGIRSKAEVRALLDCGVKRVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNARLYKLIHEIFPHICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSVEEGIRCLEN"
     gene            8935..9873
                     /locus_tag="SF008_000803"
     CDS             8935..9873
                     /locus_tag="SF008_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrgA protein"
                     /protein_id="HEG8233084.1"
                     /translation="MSGKLTYKELIIEVLKQTKKPLNVSEIWQKALEKGLDKKLSSIG
                     QTPTQTIWNRLLTDKINFLKTSIKPTTFWLKERENELLKLDNKNEITNEKQEKNKFHE
                     RDLHPLLVKFLYENLDFNLNCKTIYHEQSKKGKGGEDKWNYPDIVGVYFPYDDYEKET
                     ITLLENIKQNSYKLFSFELKIALNFSNLKECYFQAVSNSSWANEGYLVVLQEIDSEVL
                     SELRRLNQSFGIGVIKLEKDISNSQILISAKEKELDIQTLNMLINKNPNFKEFIDDIN
                     KQIKVGKEAKIQANFDEIKSDEEMEKYLKEKCILEK"
     gene            9874..10641
                     /gene="hisF"
                     /locus_tag="SF008_000804"
     CDS             9874..10641
                     /gene="hisF"
                     /locus_tag="SF008_000804"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEG8233085.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINISFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKHSGKSTLE
                     WVKKVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKMEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            10643..11266
                     /locus_tag="SF008_000805"
     CDS             10643..11266
                     /locus_tag="SF008_000805"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HEG8233086.1"
                     /translation="MQNFKELNEKIAWQKVDNLLPVIIQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEESGNFLNIIDLSLDCDNDTLLILANPVGPTCHTGD
                     ISCFEKISKNADFVFLARLEKLINARKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAATVKDKKELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(11291..12451)
                     /locus_tag="SF008_000806"
     CDS             complement(11291..12451)
                     /locus_tag="SF008_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
                     N-succinyltransferase"
                     /protein_id="HEG8233087.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     DGHQNIDLLKIIKDKFKDDEFSFVCLFEDKEPLSVESIYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(12477..13583)
                     /locus_tag="SF008_000807"
     CDS             complement(12477..13583)
                     /locus_tag="SF008_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEG8233088.1"
                     /translation="MKEQILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIV
                     SANPEVANEIRKNIIEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPITAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSRRYLMA
                     AEKIWSFIEKINNEGGADNSAIQPVMNGKSACSH"
     gene            13706..14821
                     /locus_tag="SF008_000808"
     CDS             13706..14821
                     /locus_tag="SF008_000808"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HEG8233089.1"
                     /translation="MSEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSF
                     YPFKKIVVTSSNITYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLV
                     SKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKAL
                     DQNLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDV
                     HEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMK
                     FKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEF
                     RINVKATTTEKLGFIGRKEGMAVLSNVNLKYFDWTRL"
     gene            14818..>15034
                     /locus_tag="SF008_000809"
     CDS             14818..>15034
                     /locus_tag="SF008_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEG8233090.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFDEYNGEKYYDI
                     ILLSTNTNNFLKAVGQFKHSIIILLISY"
BASE COUNT         5585 a         2208 c         2640 g         4601 t
ORIGIN      
        1 tctaaaaatt taaggataaa tatgtttaat tttataacca ctcttttaaa aaccaatctt
       61 tattttttag aagaaaaaac cacaagcaaa agttcaaatc aaacccatat aatctctctt
      121 aaacaatctg atgatgaatt tttaaattta ttattttctt ttttagtgcc acaaagcgat
      181 gaagataaga attttataga aaaaactcgc acaaaaatca aaagaaatga gcataatatt
      241 gctctgataa aaaatccaaa ttttaatgct ttaatagaca cagggttttt agatactatt
      301 gatacattaa aagaaaaatt acatatccac aaaaccgatt ttaaagatat cactcatatt
      361 atcttaacac acgcgcatcc tgatcatata ggtgctttaa tgagcgaaga aaatcttttt
      421 ccaaaagctc aaattttaat cgataaaaaa gaatatgatt tttggatcaa aagcgataga
      481 caagaaatta aaaacacctt gcttaaactt aaaaatatag aatttattaa ccactctaaa
      541 gatttaatct ttcaaaattc aggcattaaa gccatacctg cttatggaca taccccagga
      601 caaaatgcta taataattga tgataaaata gtcttttggg gagatttact tcatctttat
      661 gatatacaaa ttccaaaacc taaaatcgct ataaaatttg atatagatca aaatgaggct
      721 atacaaacaa gggaaaaact acttaaagaa tttaaagaaa gaaaactcaa agttataggg
      781 actcatgtgc cttttatcga acctaaattt ttagattaat tacttaaaaa ttactaaaaa
      841 ttaagtaaaa attttaataa tttttgctaa aattatagcc tttttatttc atgaaaggag
      901 aaaattttgg caaaagatga tgtaattgaa attgatggca ccgtacttga agcattgcct
      961 aatgcaaatt tcaaggttga acttgacaac aaacatgtaa ttttatgtca tattgcagga
     1021 aaaatgcgta tgcattatat aagaataatg ccaggtgata aagtaaaagt agaacttaca
     1081 ccttatagcc ttgataaagg gcgtataact tttagatata aataatctaa gttatttaaa
     1141 agctaatttt agataaaatt agagtttttg cgacaaatta catcgaacta tatgaagaag
     1201 tatttttaaa atccaccact tattttgaaa atagttggtt attcataaaa cctgatgtag
     1261 tcgtaaatca agtggaattc attcaaggag acgctcatga aagtgagacc atcggttaaa
     1321 aagatgtgcg acaagtgcaa agtagttcgc cgtaaaggcg tggttcgcat tatttgcgaa
     1381 aatccaaaac ataaacaaag acaaggataa acatggctcg tattgcaggt gtggatttac
     1441 caaagaaaaa aagaattgag tatggactaa cctatattta tggtatagga cttttcactt
     1501 caagaaaaat tctagataaa gtaggaattt cttatgataa aagagttcat gagttaagtg
     1561 aagatgaagc agcagctatc cgtaaagaaa ttcaagaaaa ctatatggtt gaaggggact
     1621 tgagaaaaca agttgctatg gatattaaag cgcttatgga tttaggaagc tttagaggtt
     1681 taagacacag aaaagggtta ccagttcgcg gacaaaaaac aaaaacaaac gcaagaacta
     1741 gaaaaggtaa gagaaaaact gttggtgcaa aatcataagg ataaatcatg gcaaaaagaa
     1801 aaatcgtaaa gaaaaaagta gttaaaaaaa atatagcaaa aggtattgtt tatatcagtg
     1861 cgacttttaa caatactatg gttacagtaa ctgatgaaat gggaaatgct atcgcttgga
     1921 gtagtgcagg tggtttagga tttaaaggtt ctaaaaaatc aactccttat gcagcacaac
     1981 aagcagtaga agacgcttta aataaagcaa aagaacacgg aattaaagaa gtaggcatta
     2041 aagtacaagg accaggaagc ggtagagaaa ctgctgttaa gagtgtaggt gctatggaag
     2101 gaatcaaagt aactttctta aaagatatca ctccattagc tcacaatggt tgcagaccgc
     2161 ctaagcgtcg tcgtgtctaa gatataagaa aaatttagga gaatattatg gcaagatata
     2221 gaggaccagt agaaaaatta gaaagacgct ttggtgttag cttagcatta aaaggagaaa
     2281 gaagactagc tggcaaaagt gcactagata aacgccctta tgcaccagga caacacggag
     2341 caagaaaagg taaaattagt gagtatggac ttcaattaag agaaaaacaa aaagctaaat
     2401 ttatgtatgg agtaagcgaa aagcaattcc gtcgtttatt tgctgaagca gcaagaagag
     2461 aaggaaatac aggggtatta cttatccaac ttttagaaca aagattagac aatgtagtat
     2521 atagaatggg ttttgctaca acacgtcgtt ttgcaagaca acttgtaaca catggacatg
     2581 ttttagtaaa tggtaaaaga gtggatattc ctagctttag agtagaagca ggtgctaaaa
     2641 tcgaaattat cgaaaaaagc aaaaacaatc ctcaaattac aagagctatc gaacttacag
     2701 cacaaactgg aatcgttgct tgggttgatg ttgaaaaaga taagagattt ggaattttca
     2761 caagaaaacc tgaaagagaa gaagttgtca ttccggttga ggaaagattt atcgttgagc
     2821 tttactctaa ataatagggg ctaaatatga gaaatattac aacatctgct tatacgccaa
     2881 cagaatttac aatagaaaac attagtgata ctgtggctaa aatcagtgct tggccttttg
     2941 agatcggcta tggaatcacc ctagcccatc ctttacgccg tttactttac actagcacca
     3001 taggatatgc tccaactgcg attcatattg atggcgtagc tcatgaattt gatagcatgc
     3061 gtggtatgct tgaagatgta gcacttttta tcattaatct aaaaaaacta cgctttaaaa
     3121 ttaaaggcga atcaaataaa gaaatagtag aatttagctt taaaggctca aaagaaattt
     3181 acggcaaaga tctaaataat gatcaagtag aggtagtaaa caaagacacc tatctagcaa
     3241 ctatcaacga agatgctgaa ctcaaattca cattgatcgt tgaaaaaggt attggctatg
     3301 taccaagcga agaaattaaa gagcttataa atgatcctaa atttatagct ttagatgctt
     3361 tctttacacc tgtaagagaa gcaacctatg atattgaaaa agttttgttt gaagataatc
     3421 ctgattatga aaaagtggtt ttaactgtaa caactgatgg acaaatcact ccaaatgaag
     3481 cttttcaaaa tgctctagaa gctatgtata aacaattatc agtatttgat aaaatcacca
     3541 atgttagaag cgtaattaaa aatcaagcaa caagcaatga actagaaaat actaaattat
     3601 tgcaaaacat tacagattta aatttaagtg ctagaagtta taattgtctt gaaaaagcag
     3661 gagtagttta cataggcgag cttgctttga tgagtgtaag tgaacttgca gggcttaaaa
     3721 atttaggtaa aaaatctctt gatgaaatta aaaacatcat ggaaagtata ggttttcctg
     3781 tgggaacttc taagcttagc gataataaag aaatacttaa aaataaaatc gcagaattaa
     3841 aagcacaaaa cgaaggataa agaatgagac ataaacatgg atatagaaaa cttggcagaa
     3901 cttcatctca tcgtgctgcc ttattaaaaa atttaactat agctttagta aatagcggaa
     3961 aaatcgaaac tactctacca aaagctaaag aattaagagg ttatgtagaa agattgatta
     4021 ctagagcaag acttggagat tttaacgctc atagagcagt ttttgcttca ttacaagata
     4081 aaaacgctac taataaatta gtgactgaaa ttgctccaaa attcaaagat cgcaatggtg
     4141 gatatacaag aatcatcaaa acaagaattc gccgtggtga tgctgctgaa atggctttca
     4201 tcgaatttgt agcttaatca aatcctagct tttgctagga ttaatacttc aattaaatac
     4261 cttaaaaata aaaagtttta aataattatt ttaaataaaa ttaaatttat ttattttcta
     4321 aaacccttgc taaaaattca actacttatg ctaatataag tttttaattt ttaatttcaa
     4381 ggatatgtta tgcaagaaaa cactcgttta cgcattgcga tacaaaaatc aggtagactt
     4441 tcaaaagaat ccatagagct tctttcagaa tgtggtgtta aaatgcatat ccatgaacaa
     4501 agcttgatcg ctttttctac aaatttaccc atagatattt tacgcgttag agatgatgat
     4561 atccctgggc ttatttttga tggggttgta gatttaggca ttatagggga aaatgtttta
     4621 gaagaaaatg aacttgaacg ccagtcttta ggagaaaatc caagctataa gcttttaaaa
     4681 aagctagatt ttggatattg ccgtctttct cttgccttac ctcaagaaaa taaatttcaa
     4741 aatttgaaag attttgaagg cttaaggata gctacttctt atccacaact tttaaagcgt
     4801 tttatgaaag aaaatgggat taattataaa aattgtacgc ttacaggttc tgttgaagta
     4861 gcccctaggg caaatttagc cgatgcgatt tgcgatcttg tttcaagcgg ggcaacttta
     4921 caagcaaaca atcttaaaga agttaaagtc atttatgaat ctcgtgcttg tttgattcaa
     4981 aaagaaaatg ctttaagtaa agaaaaacaa gccttagtgg ataaaattat gttgcgtgta
     5041 gcaggagtaa tgcaagcaag agaatctaaa tacattatgc ttcatgctcc aaaagaaaag
     5101 cttgataaaa ttcaagccct acttccagga gttgaaagac cgactatctt acctttagca
     5161 cacgatgaaa aaaatgtagc tttacatatg gtaagtaaag aaaatctttt ttgggaaacc
     5221 atggaggctt taaaagaaga aggtgcgagt tcgattttag ttctgcctat agaaaaaatg
     5281 ttaaagtgag taaaaaatgc aaattttagt atatgataat ttggatgaaa aacaaaaaga
     5341 agaagcgtta aaacgccctg ctataagtgc gaaagatgaa atttcaaaaa tagtaagttc
     5401 tatcattaaa gaagtgcaag aaaaaggcga tgaagctttg atagaacaag ctttgaaatt
     5461 tgataaggct gaaatttcaa agattaaaat cactcaagaa gaaatcactc aagcaagcaa
     5521 gcatttagat aaagatttac aagaagctat tttagtggct tatgaaaata tcaaaaaatt
     5581 tcacgaagcc caaatcccac atgaaatcgc tcttgaaact acaaaaggcg ttaaatgtga
     5641 agttttaaca cgccctatag aaaaagtagg actttacata ccagggggtt tggcaccttt
     5701 gttttcaacg gttttaatgc tagctattcc tgcaaaaatt gcaggttgtg aaaaaatcgt
     5761 tttagcaagt cctgcaaaaa tcaatgatgc tgtgcttttt tgtgctaagc tttgtggcgt
     5821 ggatgaaatt tatcaaatgg gtggtgcagg agctatagca gctttggctt acggtaccca
     5881 aagtgtttta aaggtggata aaatttttgg cccaggaaat gcctttgtaa ccgaagcaaa
     5941 acgccaagta agtagtgata taaacggagc agctattgat atgcaagcag gacctagtga
     6001 agttttagtc atagctgatg atttagctaa tgaaaaattt gtagctagtg atttgctttc
     6061 acaagctgaa catggtgcag attctcaagt gattttagtg tgtttaagtc aagattttgc
     6121 taaaaaagca agtgatgaag tccaaagtca attagaactt ttgcctcgca aagaacttgc
     6181 aagcaaaagc attgctaatt cacgcattat catagctaaa gatttaaatc aagccttaga
     6241 aatttcaaat ctttacgccc ctgaacattt gatcatacaa actcaaaatc cacgagaact
     6301 tttaaaaggt gtaaaacacg caggatcagt atttttagga gcttattccc cagagtctat
     6361 gggtgattat gcaagtggga caaatcatgt tttacctact tatggactta ctaaaacgca
     6421 ttctagttta ggtttggcag attttagcaa aagaatgacc gttcaagagt taagtaaaga
     6481 aggtttttta gctttaggta aaagtgttga aattttagca caaaatgagc atttagacgc
     6541 gcacaaaaat gcagtaactt ttcgtttgga aagcttaaaa tgagtcaaaa aatccttttt
     6601 atagatagag atggcacttt aatagaggag ccaaaaagcg attttcaaat cgatactctt
     6661 gaaaaattgc gttttgaaaa agatgctatt cccactcttt taaaactaaa aaaatttgga
     6721 tttaaatttg ttatggtaag caatcaagac ggtcttggaa caccaagttt tccaaaggaa
     6781 aattttgaaa tcgctcatga aaaaatgctt gatattttaa aaagttgcgg tatagaattt
     6841 caagatattt ttatttgtcc gcattttgaa aatgaaaatt gtgcttgcag aaaacctaaa
     6901 accgctatgt tagaagagta tatcaaacac gaactttatg ataaggagca aagttttgtt
     6961 ataggagatc gtgagagtga tatgatcttg gcttcaaatt taggcgtgca tggtttaaaa
     7021 tacggcgaac tttcttggaa agaaatagaa aatgaaattt taagttcttt tagaagcgcg
     7081 agttatcaaa gaactactaa agaaacagat ataaaagtaa aggtatgctt aaatgggggt
     7141 aaggttagca ttaaaacagg tattgatttt tttgatcaca tgttagagca aatcgctgta
     7201 catggaggta tagggcttga aatttcttgt aaaggagatt tggaaatcga tgagcatcat
     7261 agcgttgaag atgtagcctt agcacttgga gcttgtatca aaaaagcttt aggggataaa
     7321 atcggcattg caagatatgg ttttgcttta cctatggatg agtgtttggc aagttgtgcg
     7381 atggattttt gcaatcgtcc ccatttagtc tataaagcca aatttaaaaa atctcattta
     7441 ggggctttaa gcacagaaat gatcgagcac tttttttatt ctttaagcta tgctatgggc
     7501 gtgagtttgc atttaaaagt taaaggcaaa aacgatcatc ataaagccga agggcttttt
     7561 aaagcctttg caaaagcttt gaaaatggca gtaaaaatag aaagtgaaaa tttagccagc
     7621 tctaaaggag tgatatgaaa atcatcatca tcgatacagc ctgtgcgaat ttagcatctt
     7681 tgaaattttg tctagataga ttaggtttta atgcaactat cagtagggat ttaaaagaac
     7741 ttgaaagtgc ggataagctt tttttacctg gagtgggtac cgcaaaagaa gcaatgaaaa
     7801 atttagaaca atttaatctt attgatttta ttcaaaatac caaaaaacct ttgcttggta
     7861 tttgtttagg tatgcaaatt ttaggaaatt tttctgaaga attaaatcaa gaaaccttaa
     7921 aactcataga ttttacaact caaaaattta aaactaaaga aggctttact tttccacata
     7981 tgggatggaa tgaagtttat agctctcatg ctttgtttaa aggcttagaa ggggcttatt
     8041 tttattttgt gcatagttat tgtgtaggac ttgggaaata cactatagca gattgtgagt
     8101 attcgcaaaa atttagcgca agcgtaatga aagataattt ttacggagtg caatttcacc
     8161 ctgaaagaag tagcgaggct ggggaaattt taatttcaaa ttttattaag gatataggat
     8221 gactcaaatc atacccgcac tcgatcttat agatggcgaa gtggtgcgtc ttgtaaaagg
     8281 ggattacgaa caaaaaaaag tatataaata caatccctta aagaaattta aagaatacga
     8341 aaaagcagga gcgaaagaac ttcatcttgt agatcttaca ggtgcaaaag atcctagcaa
     8401 aagacaattt gctttgatag aaaaattagc caaagaagtc agtgtcaatt tgcaagtagg
     8461 tggaggtata cgctctaaag cagaagttag agctttgctt gattgtggag taaaaagagt
     8521 agttatagga tctatggcaa ttaaagatgc gactttatgt cttgaaattt taaaagaatt
     8581 tggtagtgaa gctatagttt tagccttaga tacgatttta aaagaagatt atgttgtggc
     8641 tgtaaatgct tggcaagaag caagcgataa aaagcttatg gaagttttag atttttatag
     8701 caataaaggc ttaaaacaca tactttgcac agatatttca aaagatggca ccatgcaagg
     8761 agtaaatgca agactttata aacttatcca tgaaattttt cctcatattt gcattcaggc
     8821 aagtggtgga gtagcaagct taaaagacct tgaaaactta aaaggaattt gtagtggggt
     8881 tatcgtagga aaagctttat tagacggagt ttttagtgta gaagaaggga taagatgtct
     8941 ggaaaattga cctataaaga attaattata gaagttttaa aacaaactaa aaagccttta
     9001 aatgtgagtg aaatttggca aaaagctctt gaaaaaggct tagataaaaa gctttctagt
     9061 ataggacaaa cacccactca aacaatttgg aataggttgc ttacagataa aattaacttt
     9121 cttaaaacct caataaaacc tacaactttt tggctaaaag aaagagaaaa tgaactttta
     9181 aagcttgata ataaaaatga aattaccaat gaaaaacaag aaaaaaataa atttcatgaa
     9241 agagatttac accccttgct tgtaaaattt ttatatgaaa atttagattt taatttaaat
     9301 tgcaaaacaa tttatcacga acaaagcaaa aagggtaagg gcggggaaga taagtggaat
     9361 tatcctgata ttgtaggggt ttattttcct tacgatgatt atgaaaaaga gaccataaca
     9421 cttttagaaa atatcaaaca aaatagttat aagctttttt cttttgaact taaaattgct
     9481 ttaaattttt caaatttaaa agaatgctat tttcaagctg taagcaattc tagctgggca
     9541 aatgaaggct atttggttgt tttacaagaa attgatagcg aagttttaag tgagttaaga
     9601 cgcttaaatc aaagttttgg cataggagtg ataaaacttg aaaaagatat ttcaaattct
     9661 caaattttaa ttagtgcaaa agaaaaagaa cttgatattc aaacactaaa tatgctgatc
     9721 aataaaaatc caaattttaa agaatttatt gatgatataa acaaacaaat taaagtgggc
     9781 aaagaagcaa aaattcaagc taattttgat gaaattaaaa gcgatgaaga aatggaaaaa
     9841 tatcttaaag aaaaatgtat tttggagaaa taaatgctta caaaacgcat aattgcatgt
     9901 ttagatgtca aagatggcag agtagtaaaa ggaacacaat ttaaaaacca taaagatatg
     9961 ggagatatca tagagcttgc taggtattat tctcaaaatg gtattgatga gcttgttttt
    10021 tatgatattg ctgcaagtgc tagaaaagaa cgcatatcaa gagaatgggt aagtgaagta
    10081 gcaaaaaata tcaatatttc tttttgtgtt gcagggggta ttaaaagcga agaagatgca
    10141 gctgaacttt tggctaatgg ggcagataaa atttctatca attctcctgc tttaaatgat
    10201 ccaagcctaa tcacacgcct tgctaaaagc tttggcgtgc aatgcgtagt agtagggatt
    10261 gatagtttta aagatgaaaa tggaaattta aaagtatttc aatacacagg ggatgaaaaa
    10321 acaagtaaac atagtggaaa aagcacttta gaatgggtta aaaaagtgca agatctaggt
    10381 gcaggcgaaa ttgttttaaa tatgatgaat caagatggtg ttaaaaatgg ctatgattta
    10441 gaacaattag aagctgtata taaaatttgt aaagtacctt tgatcgcaag tgggggagcg
    10501 ggaaaaatgg aacatttttt agaagctttt aaactaggta tagatggggc tttagctgct
    10561 tctgtttttc atcaaaaact tatagacatt aaagaattaa aaatttatct taaaaatcaa
    10621 ggcttaagta taaggatata atatgcaaaa tttcaaagaa cttaatgaaa aaatcgcttg
    10681 gcaaaaagtg gataatcttt tacctgtcat catccaagat gcaaaaactt gcgaagtttt
    10741 aatgctaggc tttatgaata atgaagcctt agaaaaaagc ttagaaagtg gcaaagtagt
    10801 ctttttttca cgcacaaaac agcgtctttg gatgaagggt gaagaaagtg gaaatttctt
    10861 aaatatcata gatttaagct tagattgtga taatgacacg cttttaattt tagcaaatcc
    10921 tgtagggcct acttgtcata cgggcgatat ttcttgtttt gaaaaaattt ctaaaaatgc
    10981 agattttgtt tttctagcca gacttgaaaa acttattaat gcacgcaaaa atgccgatga
    11041 aaatacttct tatacagcaa aacttttcaa aagtggtaca aaacgcatcg cacaaaaagt
    11101 tggtgaagaa ggcgtagaaa cagctttagc agcgacagta aaagataaaa aagagcttat
    11161 ttgtgaagca gcggatttaa tgtatcattt aagtgtttta cttgcagatg caaatcttag
    11221 tttctcagat gtgatttcaa aattaaaaga aagacataaa gcttaaagct ttatgtaaaa
    11281 taaatttata tcaatgcaag gcttcattaa gtttgactgc ttttttattt aaagctacta
    11341 tcatagcacc acttatagaa tcttgacgga aatgtagccc atttaaacct ttaagctcta
    11401 agcctttgta aatttcttta tcaaaattaa aataaggatt aagtttagca agttcttcgg
    11461 catctttgag taaaaatttc gttccttcta gcactgcaat acctgcatca actatacaat
    11521 tatcccctaa aggaattcct gtcactgaat tagcccctaa aagacaagcc ttgcctacgc
    11581 ttatagcatt gccacttgtt ccacttaaaa cacctaaaat cgaagctccg ccacctacat
    11641 cagaaccttc tcctactata gcacttgaac taatacgccc ttcaaccata caagctcctg
    11701 ttgtacctgc attaaaattc acataacttg cccctggcat gatggttgtt cctgctgcta
    11761 aagacgcacc cattcttact ttagaacttt ctaaaattct tgtattatcc tcagggataa
    11821 tatgtgctaa aaatcttggg aatttatcaa caaaatcgat ttttggatat tgattgctca
    11881 tttttaaacg catttcattt gctcttaaat actcaagctc gataggctta tcatcactcc
    11941 aagctacatt gcttaaaagt ccaaaagctc catttaaatt gatacttctt aaaggtactt
    12001 ttttagtaga aagcaaataa agttttagat aaatactttc tacacttaaa ggttctttat
    12061 cttcaaaaag acaaacaaaa gaaaattcat cgtctttaaa tttatctttg ataatcttta
    12121 ataaatcaat attttgatgc ccatcttctt ctaaaaaagg tttaaaacaa gaaagtgcaa
    12181 aatcaatatc ttctaatttc aaagtttgca caaactcact cgcattaaaa tcaatctcca
    12241 cgcccctttg cataaaagct tcaagcatga ttgccgctga gccaaaattt tgctcatagt
    12301 taatcaaagc aaaacttgct tgtaagattt tatttttatt taactgtcct ctatcaagcc
    12361 ttgctatacc aaaagcttta ggttttttat agccactttt ttgctcgatt tgtttgatta
    12421 aaagtaaaaa atcttcttta gtattaatca ttttcttttc cttatccact taatttttaa
    12481 tgcgaacacg cactttttcc attcatcaca ggttgtatag cagaattatc cgcaccacct
    12541 tcattgttaa tcttttctat aaaactccaa attttttcag ccgccattaa ataacgcctt
    12601 gaactcacac tttcagggtg ataaaaactc acaggcttgc cttcatctcc accttctctt
    12661 actatcattt ctataggaat ttgtgctaaa acttcacttt tataggcttt tgccatatct
    12721 tcagctgttc ctttaccaaa aatatcatac tctttaccat tatcaggaca taaaaatcca
    12781 ctcatatttt caatcacacc cgctatagga atatgaagtt tattaaacat atctaaagct
    12841 cttttgctat cgtctaaaga tacggtttga ggcgtgctta cacaaactcc tgcagtaata
    12901 ggaatacttt gcgcagaagt aatttgtgca tcgcctgttc ctggaggcat atctaaaaac
    12961 aatacatcaa gttcaggcca aatcacatca gctaaaagtt gctcgattgc tttcataatc
    13021 atagctccac gccacataag gccttgaccc tcttcgatca aaacccccat actcatcata
    13081 taaacaccat gagttaaaat aggctttaat ctctgcccta ctacttcagg ctgagttttg
    13141 gtttcaccta gcattcttgg aatatttggc ccataaatat ccgcgtctaa aatacctact
    13201 ctttttccca ttttagccat ggaaattgct aaatttactg tagttgtaga tttacccaca
    13261 ccaccttttc cacttgaaac catgatgaaa ttttttactt gtggagcgat attttttcca
    13321 cttcttgaat tacttttttc ttcaggaatt tttggagtaa tgatattaag ttcaatattt
    13381 tttaaagcca aactcgataa agcttcaata atatttttac gaatttcatt agctacttca
    13441 ggatttgctg aaacgatttc tatatcaatg aatacaccat catcttgaat tttaatatct
    13501 tttacaaagt taaaactcac tatatccttt tcaaaaccag gatattttac agtttttaat
    13561 ttctctaaaa tttgttcttt catatttttt ccttgtcttt taaaaaaatc aattttacta
    13621 ataaaatgat aaaatttagc tttttataag tgtataatat ggtaacatta taaaaaccaa
    13681 caatattaaa aagaggaatg aaaaaatgag tgaaatgagc ctcattatgt tagcagctgg
    13741 aaattctact cgttttaata caaaggtaaa aaaacaattt ttacgacttg gaaatgaccc
    13801 tctttggctt tatgcaacaa aaaatttaag ctctttttat ccttttaaaa aaatagttgt
    13861 tacctctagt aatatcactt atatgaaaaa atttactaaa aactatgaat tcatagaagg
    13921 tggtgatacc agagcagaat ccttaaaaaa agccttagag ctcatagata gcgaatttgt
    13981 tatggtaagt gatgtagcaa gggtattggt gagtaaaaat ttgtttgatc gtttgattga
    14041 aaatttagat aaagcagatt gtattacccc tgctttaaaa gttgcagata caacactttt
    14101 tgacaatgaa gccttgcaaa gagaaaaaat caaactcatt caaaccccgc aaatttctaa
    14161 aaccaaattg cttaaaaaag ccttggatca aaacctagaa tttacagatg atagcacagc
    14221 tatagctgca atgggtggaa aaatttggtt tgttgaaggt gaagaaaatg caagaaaact
    14281 aacctttaaa gaagatctta aaaaacttga tttgcctaca cctagctttg aaatttttac
    14341 tggcaatggt tttgatgtgc atgaatttgg agagaatcgc cctttgcttt tagcaggagt
    14401 gcaaattcat cctactatgg ggcttaaagc acacagcgat ggagatgttt tggctcactc
    14461 tttaaccgat gcgattttag gtgctgcagg acttggagat ataggagagc tttatcctga
    14521 tactgatatg aaatttaaaa atgccaactc catggagctt ttaaaacaag cttatgataa
    14581 agtcagagaa ataggttttg aactcattaa tatagacatt tgcgtcatgg cacaaagccc
    14641 taaacttaaa gactttaaac aagctatgca aagcaatata gctcatactt tagatttaga
    14701 tgaatttaga atcaatgtta aagccacaac aacggaaaaa ttgggtttta ttggaagaaa
    14761 agaaggtatg gcggtgctta gtaatgtaaa tttaaaatat tttgattgga caagattatg
    14821 aaagttttaa ttattgaaaa tgaaatttat ctagcgcaaa gcattagcat taaactaagt
    14881 gatgctggat atagctgtga aattattaac tcgtttgatg aatacaatgg tgaaaaatac
    14941 tatgacatta tactgctttc tacaaatact aataattttc taaaagccgt aggtcagttt
    15001 aaacatagta ttattatttt gcttatttct tata
//
LOCUS       DARGEY010000031        15018 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.031, whole genome shotgun sequence.
ACCESSION   DARGEY010000031 DARGEY010000000
VERSION     DARGEY010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15018
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.031"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..177
                     /locus_tag="SF008_000810"
     CDS             <1..177
                     /locus_tag="SF008_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HEG8233091.1"
                     /translation="RKLGYLCLVLASYHYFLTPKIPMFWEWSALIIALFYFIVRYTKT
                     LKKLKSNNLTFIKT"
     gene            complement(142..1854)
                     /locus_tag="SF008_000811"
     CDS             complement(142..1854)
                     /locus_tag="SF008_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8233092.1"
                     /translation="MEKLKNFLSLKNIEDTQIYKELKCAKNEALILRELCRNYVVSIS
                     SINAFTLLSTIFGNDKYLYLDALEDLKKLIERGFVNQNSSFFKSLENNKTQTLTLALL
                     QSELSLSEYFLEFLEAKPRLNFEKQEAYADYLEYLKDEFARIQLYERLSFIQKSAYNS
                     EIKNQIKLYEKHIKERLKKSKFYNVLADIFKEYNLEHKEQIIFLALLKEEYALSNESS
                     ISREMNSLLSLISENDLERHKNKKLLQENAPLLNLIEYDEYLNAFGDISKSFFIIDEI
                     LQRIINFEPKQSKKIKIESVLKDQDIFELIEPSTDINDIIMPENTKELLENILKQQDK
                     KVLERLHSWGIKSNKNIEAKIIFYGPAGTGKTMSALAMAKSMKKSVLSFDCSKILSKW
                     VGESEQNVRKIFDTYKNIVQTCKQSPILLLNEADQFLSTRVDGSSGSDKMHNQMQNIF
                     LEQIERFSGVIIATTNFLESLDSAFSRRFDYKIEFKKPDFKDRLKIWEKFLPKKALFE
                     KDFDINILSNYELSGAQILMVVKNTALKVAVSKDGVFKMQDFIESIQKELNSSFDKSK
                     IVGF"
     gene            complement(1854..2678)
                     /locus_tag="SF008_000812"
     CDS             complement(1854..2678)
                     /locus_tag="SF008_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233093.1"
                     /translation="MKFFLLVFCFVNLALAQVYKGELYFYHLQDKEIFAIVYDNAPMT
                     PLFDRDKNQTSSSFLIIDDINGNLEIPLVKTNDFWQDERKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFNDDFKEFHPVHKSVFSFEQIRQKPIFLQD
                     GKISFEEWYYFYEDGMSRAILELNNFVYDINAHAFVKLNDLYNTKNQKFQNLLHEKLK
                     NTCDECFEDLQNLQFNNNFLLNNGKLKICYLPFEGHFLDENICVEFNEDELKEFKK"
     gene            complement(2689..3165)
                     /locus_tag="SF008_000813"
     CDS             complement(2689..3165)
                     /locus_tag="SF008_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233094.1"
                     /translation="MKHCLALCFIFFLCACSVKNQNFSSQSLMVLIASPMIKINDAAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINAVCYDKKVFNQKFFKNVYYDDILSDIL
                     KANALWQGKNLEKTDCGFEQNLKAKNYEIFYQVCDNKVSFFDKISHTKIILTHIQN"
     gene            complement(3174..3665)
                     /locus_tag="SF008_000814"
     CDS             complement(3174..3665)
                     /locus_tag="SF008_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HEG8233095.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPNAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKAIKDSKLKVNSSIRGEEIRVVAKQIDDLQAVMKLVKELDLELNISFK
                     NLK"
     gene            complement(3655..4590)
                     /locus_tag="SF008_000815"
     CDS             complement(3655..4590)
                     /locus_tag="SF008_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HEG8233096.1"
                     /translation="MKIVCLDAATLGDYDLSVFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGVNNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQVLYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGTIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKLLKDNAILINVGRGGIVNENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(4593..5762)
                     /locus_tag="SF008_000816"
     CDS             complement(4593..5762)
                     /locus_tag="SF008_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HEG8233097.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVINNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLAHIANEAGFQTNFSFVDEVEFS
                     EEGIFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(5772..6377)
                     /locus_tag="SF008_000817"
     CDS             complement(5772..6377)
                     /locus_tag="SF008_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HEG8233098.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCGSNNDNADTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSASSAKKSGFFGGGSKATSSSSSFGS"
     gene            complement(6497..6709)
                     /locus_tag="SF008_000818"
     CDS             complement(6497..6709)
                     /locus_tag="SF008_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEG8233099.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            6869..8245
                     /gene="ccoG"
                     /locus_tag="SF008_000819"
     CDS             6869..8245
                     /gene="ccoG"
                     /locus_tag="SF008_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HEG8233100.1"
                     /translation="MQGHITNYTKKRYFVYLIASIIIFSLPFIRINENHFFLLSFDHS
                     KLNLFFISFSTQEFYLMPFVLIFLFLFIFFITTLGGRIWCAWSCPQTIFRVIYRDIIQ
                     TKFLKIRKNINNKQKEYERQYFKKFLGVIIFYFISLVAVSNLLWYFIPPEDFFNYIQN
                     PGEHLLLLGILFCASLLFTLDITYLQEKFCVYVCPYARIQSVMFDHDTMQVIYDEKRG
                     GLIYDGHTKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQS
                     KFNRPSLINWTSAKAIETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESMLLNIN
                     RSSELYNISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRPNKPFK
                     LKAGEQVKKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVYPKSTL
                     IKDKNELK"
     gene            8232..8864
                     /gene="cmeR"
                     /locus_tag="SF008_000820"
     CDS             8232..8864
                     /gene="cmeR"
                     /locus_tag="SF008_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HEG8233101.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMGFFKQQNNSYMKKNAEK
                     LAVLFCTMLKEPYHHLNVLINARLKNKKEQKEHVEFVVNVFLNGINSSKA"
     gene            8959..10062
                     /gene="cmeA"
                     /locus_tag="SF008_000821"
     CDS             8959..10062
                     /gene="cmeA"
                     /locus_tag="SF008_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HEG8233102.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEAPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIENKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQNGKWDLDSIHANLNLNGETVQGKLYFIDSVIDANSGTVKAKAIFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQNQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            10062..13184
                     /gene="cmeB"
                     /locus_tag="SF008_000822"
     CDS             10062..13184
                     /gene="cmeB"
                     /locus_tag="SF008_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HEG8233103.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGAIGLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEED
                     QGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLQDWKDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAVANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMVFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            13177..14655
                     /gene="cmeC"
                     /locus_tag="SF008_000823"
     CDS             13177..14655
                     /gene="cmeC"
                     /locus_tag="SF008_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HEG8233104.1"
                     /translation="MNKIISISAIASFTLLISACSLSPNLNIPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSGF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKEAYESAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNI
                     KYSYANSIVDVIKAFGGGIEQNEDTSKNIKEESKNLDISFRE"
     gene            complement(14678..14929)
                     /locus_tag="SF008_000824"
     CDS             complement(14678..14929)
                     /locus_tag="SF008_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233105.1"
                     /translation="MNKAKIVQNLNALFKQRAEFYSYFDENIAKINDTEVFDFKNAKN
                     LNPEEVYKQFYHFDYAIRKLLPAIYKVYEITDADLDKDF"
BASE COUNT         5222 a         2421 c         2054 g         5321 t
ORIGIN      
        1 agaaaactag gatatttatg cttagttttg gcaagttatc attatttttt aaccccaaaa
       61 attcctatgt tttgggaatg gagtgcttta attatagctt tgttttattt tatagttcgc
      121 tatacaaaaa cattaaaaaa gttaaaatcc aacaatctta cttttatcaa aacttgaatt
      181 taattctttt tgtatgcttt ctataaaatc ttgcatttta aaaaccccat cttttgatac
      241 agctactttc aaagctgtat tcttcaccac cattaaaatt tgtgctccac ttaattcata
      301 atttgataaa atatttatat caaaatcttt ttcaaataat gcttttttag gtagaaattt
      361 ttcccaaatt ttaagcctat ctttaaaatc aggtttttta aattctatct tataatcaaa
      421 tcttcttgaa aatgcactat ctaagctttc taaaaaattt gtcgtagcga taatcacacc
      481 actaaaacgc tcaatttgct ctaagaatat attttgcatt tgattatgca ttttatcgct
      541 accactactt ccatctacac gcgtacttaa aaactgatca gcttcattga gaagtaaaat
      601 aggactttgt ttacaagttt gcacgatatt tttataagta tcaaaaattt ttcttacatt
      661 ttgctcactc tctccaaccc atttgctcaa aattttagaa cagtcaaaac taagaacaga
      721 ttttttcatt gatttagcca tagctaaagc tgacatagtt tttccagtac cagcaggacc
      781 ataaaaaata attttagctt ctatattttt attactcttt ataccccaag aatgaagtct
      841 ttctaggact tttttatctt gttgttttaa aatattttct aaaagctctt ttgtattttc
      901 aggcataata atatcattga tgtcagtgct tggttctata agctcgaaaa tatcttgatc
      961 ttttaaaaca ctttcaattt tgattttttt actttgtttt ggttcaaaat ttataattct
     1021 ttgtaaaatt tcatcgataa taaaaaaact tttagaaata tctccaaaag catttaaata
     1081 ttcatcatac tcgattaagt ttaaaagagg agcattttct tgtaatagtt ttttattttt
     1141 atgcctttct aaatcatttt cactgattaa agaaagtaaa gaattcattt ctctagaaat
     1201 cgaactttca ttacttaagg cgtattcttc ttttaaaagt gctagaaaaa taatttgttc
     1261 tttatgttca agattgtatt ctttaaaaat atcagccaat acattataaa atttactttt
     1321 ttttagtctt tctttgatat gtttttcata aagtttaatt tgatttttta tttcactatt
     1381 ataagcactt ttttgtataa aacttaatct ttcgtataat tgaatacgcg caaattcatc
     1441 ttttaaatat tctaaataat ctgcataagc ctcttgtttc tcaaaattta aacgaggttt
     1501 tgcttctaaa aattctaaaa aatattcact tagactaagc tcactttgca ataaggcaag
     1561 agttaatgtt tgagttttat tattttctaa acttttaaaa aaactcgaat tttgatttac
     1621 aaaacctctt tcgataagtt tttttaaatc ctccaaagca tcaagataaa gatacttatc
     1681 atttccaaaa attgtcgata ataaagtaaa ggcattgata gaagaaatag aaacgacata
     1741 atttctacaa agttctctaa gaatcaaagc ctcattttta gcacacttaa gctctttata
     1801 aatttgagta tcttctatat ttttcaaact taaaaaattt tttaattttt ccattatttt
     1861 ttaaattcct taagctcatc ttcgttaaat tctacgcaaa tattttcatc taaaaaatga
     1921 ccttcaaaag gtagataaca aatttttagt tttccattat taagcaaaaa attattatta
     1981 aattgtaaat tttgcagatc ttcaaaacac tcatcacatg tatttttaag cttctcatgt
     2041 aaaagatttt gaaatttttg atttttagta ttatacaaat catttagttt tacaaatgcg
     2101 tgagcattaa tatcataaac aaaattattt aactctaaaa tagcacggct cataccatct
     2161 tcataaaaat aataccattc ttcaaaacta atttttccat cttgtaaaaa aataggcttt
     2221 tggcgaattt gttcaaaact aaatacactc ttatgaacag gatgaaattc tttaaaatca
     2281 tcattaaaac ctataaaatc aagactacgc tttatacgaa tgccatcttg cgtttcaaca
     2341 agttctaaag tagttgttcc taaattttct ccttgaaaat ttttattatc atatgtaagc
     2401 attttagaag aattgatttt atatttttta cgctcatcct gccaaaaatc atttgtctta
     2461 acgagcggaa tctctaaatt tccatttata tcatcaataa ttaaaaaact agaacttgtt
     2521 tgatttttat ccctgtcaaa aagtggagtc ataggcgcat tatcataaac tatggcaaaa
     2581 atttctttat cctgcaaatg ataaaaatac aattcacctt tataaacttg cgctaaagct
     2641 agatttacaa agcaaaatac cagtaaaaaa aatttcaaac tctatccttt aattttgaat
     2701 atgcgttaag ataattttag tatgtgaaat tttatcaaaa aaacttactt tattatcaca
     2761 aacttgataa aaaatttcat aattttttgc ttttaaattt tgttcaaaac cacaatcagt
     2821 tttttctaaa tttttaccct gccataaagc atttgccttt aaaatatcac ttaaaatatc
     2881 atcataatat acatttttaa aaaatttttg attaaacact tttttatcat aacacactgc
     2941 attgatacaa attttatctt tgattttgag ttcaaaaaaa gcttgcccta gtttataaac
     3001 ttctaaattt aaagcattat tttctttttt taaaaaagct gcgtcattga tttttatcat
     3061 aggagaagca atcaaaacca tcaagctttg actcgaaaaa ttttgatttt tcacactaca
     3121 agcacaaaga aaaaaaataa aacacagagc taaacaatgc ttcaaatttg accttattta
     3181 agatttttaa aactgatatt taactctaaa tcaagctctt ttacaagctt catcacagct
     3241 tgtaaatcat caatttgttt tgctacaaca cgaatttctt caccacgaat cgaagaatta
     3301 actttaagtt tgctatcttt gatagcttta ttgatttttt tggcattttc actatcaata
     3361 gcatcgtttg ctttcaaatt taaacgaaac attgctccac tttcacgaga aagctcttta
     3421 atagcattag gattaattcc tcttttgata agtttagaaa tcactatatc ttttaaaaca
     3481 tcaagctttc cttcactaga agaactgagt ttaaaaatac tctctttttc gcttaaatca
     3541 atctcacact taattccttt taagtcataa cgactatcaa gttctttttt agcttgttca
     3601 aaagcatttt ttaactcttg tttatctaaa gctgctgaaa tatcaaaact atgttcactt
     3661 gccattttct atccattctt ttaaattatt ataaactata tccattaaag catttaaagc
     3721 ctccttgctc gcccacgcaa catgaggagt gataataaga ttttctttat ttttaatgct
     3781 taaaagtgga tgatttttca tcataggttc aatttctaaa acatcaagcc ctacacgaat
     3841 atttttttca tctatgattt tagctaaatc attttcattg acaatcccac ctcttcctac
     3901 attaatcaaa atcgcattat cttttaaaag ctttaattct tcaaaggcga gtaaattttt
     3961 ggttttttca tttaaaggtg cgtggatact tataatatcg caagttttta ataaatcttt
     4021 taattccaaa tgtacaaaat ctgcgttttt attagctcca ctcgtagaat aataataaat
     4081 ttcggctcca aaagcctttg aaatttttgc cacttcttta cctatggttc ctaaacctat
     4141 aataccatgt tttttgccac ttaaggtgtt taaaattcta ctataatctg taaaaatagg
     4201 actttcacac catttaccct ctttgctcca tttgtcataa taaagcactt gatttaaaaa
     4261 agcaaacata aacgcaaaag tatgttgcac cacactcata gtagaatacc cagcagcatt
     4321 ttttacaata ataccttttt ctttagcata ctcaatatcg atattattaa cccctgtagc
     4381 agtttccaaa atgagtttta aatttttaca agcatcaatc acatctttat caattacaac
     4441 cttgtttgtc atggcgacat tagcatcttt taaacgctct atggtttgct ctttatttgt
     4501 tgtggtataa atttgcaaag aaccaaattt ttcaaaaaca cttaaatcat aatcccctaa
     4561 agttgccgca tctaaacaaa caattttcat ttctaatcct ttataatatg tcctacaaat
     4621 ttagaataat tatcaagcac aagtcctcct tttctaaatc ctaagccaca cccttcataa
     4681 gcaaagaaaa cacctgcttg atagtattcg ttttcacatg aattaaactc tacatattct
     4741 tgataaatag ccttattatt cccataagga cctacattct catgcaaagt ttttccatct
     4801 ttaattatac tgatatttgc accttctcta ccaaaaacag gttttttaac atagttttta
     4861 ccttccaaag gagtatcttt tgtttctaaa agtaatggat gatttggata aagttcccat
     4921 agaattttta aaattccctt agattgaaat aaaagcgtat aagcaggatt taaaataatt
     4981 gctctttgat tacgcatgat ttgagttaaa agcatagcaa gttcaccctc ttctatggct
     5041 atatcttccc aaggaataag cttaaaccaa tactcataat tttcaccctc tttaaaaatt
     5101 ccttcttcac taaattctac ctcatctaca aaggaaaaat tagtttgaaa acctgcttca
     5161 ttggctatat gtgcaagcaa ttttgtagtg atttcctctt ctttacttcc tgcaacactt
     5221 gaaaaaagaa ttttccatcc ttgataatgc tcttcaaacc cttcaacact ttcatcaagg
     5281 gtaataagtc ttttaaaatt atccatcaaa ctttcataaa tgctgttaaa ttgtgcgctt
     5341 tcatccattc cattttgttt taaaagtgcc cattgtaaaa tcgcactttc aaaaagagca
     5401 gtaggggtat cagcattaaa ttctataagt tttataggct tgccatcaag tccacccgct
     5461 aaatcaaaac gcccatataa atgccaatga acctcatttt cccaactcat cttaatcgca
     5521 tcaataagat taaaaggaat tccaagctca tcaaaacgat cattattaat cacttcttgc
     5581 gctgcagcaa taaacatatc ataaagctca tttaccgctt cataataagc attagcttca
     5641 ctttccttaa cacaaactaa cttattgcta atataatcac ttccatcttc atctgtatgc
     5701 caagaaaaac ctatattttc taaataatct ttttgaagtt tgtctacttg taataattgc
     5761 attatttatc cttaagagcc aaaagaagaa ctagaacttg tggctttaga gcctccacca
     5821 aaaaaacctg attttttagc acttgaagca gagcttgttg tgcctgcttt attaaaacta
     5881 ttaacactcc tttgataagc actttgattt gaaaaagcac cgcgttgttg gttggcaaaa
     5941 ttttgattat tgaaaagttt tgaacctatc caacttccta aaatagcacc tgcagcactt
     6001 gcgagtaaag tttcccctaa actcaatccc ccactactga tttgtccatt gtctttagtt
     6061 aaatttgaag ttccattatc aattttagct gcttcttctt taatcaaagc atccatttct
     6121 tctttggata aaattctttc tgtaccatta agatctttta aaactaccct tgtttcatca
     6181 cttggatatt gatctttgat tttatactgc cctggagctg tttcttcgat aattacaaaa
     6241 gctccttgag cattagctgc ttgatttaaa gtatctgcat tgtcattatt acttccacaa
     6301 cctgctaaag cacctccagc aacagctgct aaaccaccta tcataccaat ttgaatgatt
     6361 tttttgattt ttttcataag tttatcctaa aaacagaaaa tttaaattag aaattttaac
     6421 aaaaaataat aaatactttt taatttaata ccaaatgaag tttgtagata taaaaaagcc
     6481 ctttcgggct tttgggttag agtcttgact cgtagcgtct aagcatataa agtcttttaa
     6541 gcattttttt gcgtgctgaa attttttgtt ttttgcgaat ttcagtcata ggctcaaaaa
     6601 atcttcttgc tcttacttca gtcacaacta gatttctatc tacttgtttt ttgaatttac
     6661 gatacgcttc atcaaaagac tcgttaggat gcaccttgat tcctggcaca gtcctcacca
     6721 cctttctgtg taaatttttg ttgtgaaata taattataaa acacttctta ttaattctaa
     6781 cttagaaagc atttaaaaat tgttttagtt tttatcggtt ataatcctta attacaaagt
     6841 gctaaaaaat tataattaag gtctaaaaat gcaaggacac attacaaact atacaaaaaa
     6901 acgatatttt gtatatttaa ttgcaagtat tatcatattt tccctacctt tcataagaat
     6961 taatgagaat catttttttc ttttaagttt tgatcattct aaattaaacc tattttttat
     7021 ttctttttca acacaagaat tttatctcat gccttttgtt cttatatttc tttttttatt
     7081 tatttttttt attacaactt taggtggaag aatttggtgt gcttggagtt gtccacaaac
     7141 gatttttaga gttatatata gagatatcat acaaactaaa tttcttaaaa ttcgcaaaaa
     7201 tatcaataac aaacaaaaag aatatgagag gcaatatttt aaaaaatttc ttggagtgat
     7261 aattttttat tttatatctt tagttgctgt tagtaattta ctttggtact ttattcctcc
     7321 tgaagatttt ttcaattata ttcaaaatcc tggcgagcat ctacttttac ttggaatttt
     7381 attttgtgct agcttacttt ttactttgga tattacctat ttacaagaaa aattttgtgt
     7441 ttatgtctgt ccttatgcaa gaatacaatc tgtaatgttc gatcatgata caatgcaagt
     7501 gatctacgat gaaaaacgcg ggggcttgat ctatgatgga cacaccaaac ttcataaaaa
     7561 accgcctgag ggagaatgca taggttgcga agcctgtgtt agtatctgtc caactcatat
     7621 tgacatacgc aaaggaatgc aacttgaatg tattaattgt cttgaatgtg ccgatgcttg
     7681 ctctaaggtt caaagcaaat ttaatcgtcc aagtttgatc aattggacaa gtgcaaaagc
     7741 tattgaaacg cgttctaagg ttcattattt aagatttaga acgatagcat attttatagt
     7801 tcttttaatt gctttactgg ctttaatcat catgggaagc aaaaaagaaa gcatgctttt
     7861 aaatatcaat cgtagtagtg aattatataa tatttcaaat gttaaaggtg aattagtcat
     7921 ttcaaatgct tatacctttt tgtttcaaaa tacagattct aaacctcatg aatattattt
     7981 tacagcaaat ttagaaggaa taaatgatgg aattgaaatc ataagaccaa acaaaccttt
     8041 taaattaaaa gcaggagaac aagtcaaaaa aatagttgtt atcagggcta caaaaaattt
     8101 agcaaataat gataaaaaag acgtaatctt tcctttacat ataaaagctt acgcaaagga
     8161 taatgaaaaa atttcggttt ttagaaaaag tatatttgta taccctaaaa gcactcttat
     8221 aaaggataaa aatgaactca aatagaacac catcacaaaa agttttagcc agacaagaaa
     8281 aaatcaaagc agtggcctta gagctttttt taacaaaagg ataccaagaa acaagtttga
     8341 gtgatattat taaattatct ggaggatctt attctaatat ttatgatggt tttaaaagta
     8401 aagaagggct attctttgaa attttagatg acatatgtaa aaaacacttt catcttattt
     8461 attccaaaac acaagaaatt gaaaatggca ctttaaaaga aattttaact tcttttggtt
     8521 tagcttttat agaaattttc aatcaaccag aagctgtagc ttttggtaaa attatctatt
     8581 ctcaagttta tgacaaagat agacatcttg ccaattggat agaaaataat caacaaaatt
     8641 tttcctataa catacttatg ggttttttca agcaacaaaa taattcttat atgaaaaaaa
     8701 atgcagaaaa acttgctgtt cttttttgca ctatgttaaa agaaccttat catcatctta
     8761 atgttttaat taatgctcgt ttaaaaaata aaaaagaaca aaaagaacat gttgaatttg
     8821 ttgtaaatgt ttttctaaat ggaatcaata gctccaaagc ttaaaaaata attttattaa
     8881 ccaaaattaa gatataatta gccaaaaatt tttgtaataa aaattacaat ttttaattta
     8941 atttttcaag gcaaaaccat gaaattattt caaaaaaata ctattttagc tttaggtgtt
     9001 gtgcttttac tcactgcttg cagcaaagaa gaagcaccaa aaatacaaat gccgcctcaa
     9061 cctgtaacaa ccatgagtgc taaatctgaa gatttaccac ttagttttac ttaccctgct
     9121 aaacttgtca gtgattatga tgtcattata aaacctcaag ttagtggcgt aatagaaaat
     9181 aaacttttta aagctggaga taaagtaaaa aaaggacaaa cattatttat tatagaacaa
     9241 gacaaattta aagctagtgt tgattcggct tacggacaag ctttgatggc taaggcaact
     9301 ttcgaaaatg caagcaagga ttttaatcgt tctaaagctc tttttagtaa aagtgcaatc
     9361 tctcaaaagg aatacgactc ttctcttgct acatttaaca attcaaaagc tagtctagca
     9421 agtgctagag cacagcttgc aaatgcaaga attgatctag atcataccga aataaaagct
     9481 ccttttgatg gtactatagg agatgcttta gttaatatag gagattatgt aagtgcttca
     9541 acaactgaac tagttagagt tacaaattta aatcctattt acgcagattt ctttatttca
     9601 gatacagata aactaaattt agtccgtaat actcaaaatg gaaaatggga tttagacagc
     9661 attcatgcaa atttaaatct taatggagaa accgttcaag gcaaacttta ttttattgat
     9721 tctgttatag atgctaatag tggaacagta aaagccaaag ctatatttga caacaacaac
     9781 tcaacacttt taccaggtgc ttttgcaaca attacttcag aaggttttat acaaaaaaat
     9841 ggctttaaag tgcctcaaat agctgttaaa caaaatcaaa atgatgttta tgttcttctt
     9901 gttaaaaatg gaaaagtaga aaaatcttct gtacatataa gctaccaaaa caatgaatat
     9961 gccattattg acaaaggatt acaaaatggc gataaaatca ttttagataa ctttaaaaaa
    10021 attcaagttg gtagcgaagt taaagaaatt ggagcacaat aatgttttct aaatttttta
    10081 tcgaaagacc tgtttttgct tcagttgttg caattatcat ttctttagct ggagctatag
    10141 gtcttacaaa tttacctata gaacaatatc cttctttaac ccctcctaca gttaaagtaa
    10201 gtgcaactta cacaggagct gatgcacaaa ccattgcttc aacagttgca agtcctatcg
    10261 aagatgcaat caatggcgca gataatatga tttacatgga ttcaacttca agttcttcag
    10321 gaactatgag tttgactgtt tattttgata tcggtacaga tcctgatcaa gccaccatag
    10381 atgttaataa tagaatttca gccgcaactg caaaaatgcc agatgcagtt aaaaaacttg
    10441 gagtaacagt tagaaaaact tcctcaacaa cacttgctgc aatttctatg tattcaagtg
    10501 atggctcaat gagtgcagta gatgtatata actatatcac tttaaatgtt ttagatgagt
    10561 taaaaagggt tccaggagtt ggagatgcaa acgctatagg aaatcgtaat tattctttaa
    10621 gaatttggct caagcctgat ttattaaata aatttggaat cacagctact gatgtaattt
    10681 ctgcggttaa tgaccaaaat gcccaatacg caactggtaa aattggcgaa gaacctgtaa
    10741 cccaaaaatc cccttatgtt tattcaatca ctatgcaagg aagactacaa aatcctagtg
    10801 aatttgaaaa cattatttta agaacaaata atgatggatc atttttaaga cttaaagatg
    10861 tagctgatgt ggaaatagga tcacaacaat acagctcaca aggacgatta aatggcaatg
    10921 atgcagttcc aattatgatc aatcttcaat caggggcaaa cgcattgcat acagcagaac
    10981 ttgttcaagc taaaatgcaa gaactttcaa aaaattttcc aaaaggttta acatataaaa
    11041 ttccttacga tacaacaaaa tttgtaatag aatcaatcaa agaagttgtt aaaacttttg
    11101 ttgaagctct aattttagtt atcattgtta tgtatatgtt cttaaagaat ttccgtgcaa
    11161 cacttattcc tatgatagct gtacctgttt cattgttagg aacttttgct ggactttatg
    11221 ttttaggttt tagtattaac ttgcttacgc tttttgcttt aattttagcc atagggatcg
    11281 ttgtagatga tgcgattata gttgtagaaa atattgatag gattttacat gaaaatgagc
    11341 aaataagcgt aaaagatgct gctatccaag cgatgcaaga agttagctct ccggttattt
    11401 caattgttct tgtgctttgt gctgtttttg taccagtttc ttttatatca ggttttgttg
    11461 gagaaattca aagacaattt gctcttacct tagctatatc tgtaaccata tcaggttttg
    11521 ttgctcttac cttaacacct tctttatgtg cactcttttt gcgacgcaat gaaggagagc
    11581 catttaaatt tgtaaagaaa tttaatgatt tttttgattg gagtacctct gtatttagcg
    11641 caggagtagc atatatccta aaaagaacca ttcgttttgt tttaattttt tgtattatgc
    11701 ttggagcaat tttttatctc tataaagcag taccaaattc tttagttcct gaagaagatc
    11761 aaggtttgat gattagcatt attaatcttc cttcagcttc agcactccat agaacaattt
    11821 cagaggttga tcacataagc caagaagttt taaaaactaa tggagttaaa gatgcaatgg
    11881 ctatgatagg atttgatctt tttacaagtt cactcaaaga aaatgccgct gcaatgttta
    11941 taggtttgca agattggaaa gatagaaatg taagcgctga tcaaattata gccgaactta
    12001 ataaaaaatt tgcttttgat cgcaatgctt caagtgtatt tataggctta cctcctatac
    12061 ctggattaag tatcacaggc ggttttgaaa tgtatgttca aaacaaaagc ggaaaaagct
    12121 atgatgaaat acaaaaagat gtaaataaac ttgttgctgt ggccaaccaa agaaaagagc
    12181 tatcaagagt aagaacaacc cttgatacaa ctttccctca atacaagctt ataattgata
    12241 gagataaatt aaaacactac aatcttaaca tgcaagatgt ttttaacacg atgaatgcaa
    12301 ctataggcac ttattatgtt aatgattttt ctatgctagg taaaaacttc caagtaaata
    12361 tccgcgcaaa aggtgatttt agaaatacac aagatgcatt aaaaaatatt tttgtaagat
    12421 caaatgatgg aaaaatgata ccacttgatt ctttcttaac tttacaaaga agttcagggc
    12481 ctgatgatgt aaaacgattc aaccttttcc cagcagcaca agttcaaggt caacccgcac
    12541 caggttatac ttcaggccaa gctatagaag cgattgctca agtagcaaaa gaaactttag
    12601 gggatgatta ttccatagct tggagtggat cagcttatca agaagtttct agcaaaggaa
    12661 cagcaagcta tgcttttgct ttaggcatgg tatttgtctt tttaatccta gctgcccaat
    12721 atgaaagatg gcttatacct ttagcagttg taacagctgt gccttttgcg gtatttggat
    12781 catttttatt ggtatattta agaggattta gcaatgatat atattttcaa acaggacttt
    12841 tgctcttgat tggactttca gctaaaaatg ctatcttaat cgtagaattt gcaatggaag
    12901 agcgctttaa aaaaggtaaa ggagtttttg aagcagctgt tgcagcagca aaacttcgtt
    12961 ttcgtcctat cataatgact tctttggcat ttacttttgg ggtcttgcca atgattttcg
    13021 caacaggagc aggaagtgct tcaagacact ctttaggaac agggcttatt ggtggaatga
    13081 tcgcagcatc aactttagcg atattctttg tgcctttatt tttctatctt ttagaaaatt
    13141 ttaatgaatg gctagataaa aaaagaggta aggttcatga ataaaataat ttcaattagc
    13201 gctatagcaa gttttactct tttgatttca gcttgctctt taagtccaaa tttaaatatt
    13261 cccgaagcaa actatagcat tgataataag cttggagcct tatcctggga aaaagaaaac
    13321 aatagctcta tcacaaaaaa ttggtggaaa gactttgatg atgaaaattt aaataaagtg
    13381 gttgatttag cacttaaaaa taataatgat ttaaaacttg ctttcataca catggaacaa
    13441 gctgctgctc aattaggtat agattttagc agtttgttgc caaaatttga tggtagcgca
    13501 agcggaagtc gtgcaaaaac agctataaat gctccaagca atcgaactgg ggaagtaagt
    13561 tacggtaatg attttaaaat gggacttaat ttaagctatg aaatcgatct ttggggaaaa
    13621 tatcgcgata catatcgcgc ctcaaaatca ggctttaaag caagtgagta tgattatgaa
    13681 gctgcaagac tttctgttat ttcaaataca gttcaaactt attttaatct tgtaaatgct
    13741 tatgaaaatg aaaatgctct taaagaagcc tatgaatctg caaaagaaat ttataggatt
    13801 aatgatgaaa aatttcaagt tggtgctgta ggtgaatatg aacttgctca agcaagagcc
    13861 aacttagaaa gtatggcttt gcaatataat gaagcaaagt taaataaaga aaattacctt
    13921 aaagctttaa aaattttaac ttcaaatgat ttaaatgaca tactttacaa aaatcaaagc
    13981 tatcaagttt ttaatcttaa agaatttgac attccaactg gaatttcaag caccatcttg
    14041 cttcaacgtc cagatattgg ctcttcttta gaaaaattaa ctcagcaaaa ttatcttgtt
    14101 ggagtagctc gcacggcttt cttacctagc ctttctttaa caggattatt gggatttgaa
    14161 agcggggatt tagatacctt ggttaaagga ggttctaaga cttggaatat aggtggaaac
    14221 tttactctgc ctatttttca ttggggtgaa atttaccaaa atgtaaattt agccaagctt
    14281 aataaagatg aagcttttgt aaattatcaa aatactttga ttactgcttt tggagaaatt
    14341 cgctatgctt tagtagctag aaaaactata cgcttacaat acgataatgc acaagcaagc
    14401 gaacaatctt acaaaagaat ctatgaaatt gctaaagaac gctatgatat aggagaaatg
    14461 tctttgcaag attatttaga ggcacgtcaa aattggctta atgctgcggt tgcttttaat
    14521 aatattaaat attcttatgc caattccata gtagatgtaa tcaaagcatt tggtggagga
    14581 attgagcaaa atgaagacac gagtaaaaat ataaaagaag aatcaaaaaa tttagatata
    14641 tcttttagag aatagttcgt tctattctct aaataaatta aaaatcttta tctaaatctg
    14701 catctgtaat ttcataaacc ttgtaaatag caggcaataa ttttcttata gcataatcaa
    14761 aatgataaaa ttgcttatat acctcttctg gatttaaatt tttagcattc ttaaaatcaa
    14821 atacttcagt atcattgatt ttggcaatat tttcatcaaa ataagagtaa aactctgctc
    14881 tttgtttaaa caaagcattt aaattttgaa caattttggc tttattcatt ttatatcctt
    14941 tttaaataat ttaaaaactt aatcccattt tttatttaag aaataaaaaa tttactccta
    15001 ttttagctaa aaattgat
//
LOCUS       DARGEY010000032        14975 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.032, whole genome shotgun sequence.
ACCESSION   DARGEY010000032 DARGEY010000000
VERSION     DARGEY010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14975)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14975)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14975
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.032"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            25..1314
                     /gene="cetZ"
                     /locus_tag="SF008_000825"
     CDS             25..1314
                     /gene="cetZ"
                     /locus_tag="SF008_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
                     /protein_id="HEG8233106.1"
                     /translation="MFGAKKNNTEIIEQLEKKCNGLEDILRSIGNTMAVIEFTTDGVI
                     LEANQNFLTTMKYSLSEIKGKHHSMFCLPEVVNSSAYNDFWKDLRDGKARSGLFRRIA
                     KGGIDVYLEANYLPISDNNGYVYKIIKFANDITQRHYEMLDLRNTIAAANRSMAIIEF
                     KPDGTIITANENFLRTMDFNIDEIKGKHHSMFCDSNYRHSKDYVQFWEDLREGKFQSG
                     KYIRYGRNNKKVYLEASYNPVKNDDGKIYKVIKFATDISEQVKKDQEKLCLISELAEK
                     NDNLTQDGDRVIENTVSNVQNIADMMSQSSNLVSSLNQQSDEIKSIIQTISDIADQTN
                     LLALNAAIEAARAGEHGRGFAVVADEVRNLAERTGHSVNEITTTINSIRNVTSQVVES
                     IKSGLEDVNQSVELAKEARECMEKIRESSAEVAKAMS"
     gene            complement(1337..1984)
                     /locus_tag="SF008_000826"
     CDS             complement(1337..1984)
                     /locus_tag="SF008_000826"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HEG8233107.1"
                     /translation="MESSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKIAMIKL
                     CDLLKPYDFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(1959..4088)
                     /locus_tag="SF008_000827"
     CDS             complement(1959..4088)
                     /locus_tag="SF008_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8233108.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSTDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIHDSRSYSSYLLKKHNINLNKIQELQNHENIQNLSNHTSDLTLLAQNGTIDPL
                     IGRKFELERMMQILSRRKKNNPILVGEAGVGKTAIVEGLALAIAKKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILNELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDCAIDLIDELGASFALNPKAKKNAN
                     LKDLENVLVKMTHHHKMFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTELCKSLAEFLGLNLERFDMSEYAEKHAISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTIIIMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLNDAIL
                     VKIIEKELDEISKNLNNIKLSVDDKAKIYLAKKAYNKEFGVRLLKRIISEEIGEKISD
                     EILFGKLKKGGIAKIKLGKNGKLEFIF"
     gene            complement(4085..4375)
                     /locus_tag="SF008_000828"
     CDS             complement(4085..4375)
                     /locus_tag="SF008_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HEG8233109.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVIDSAKLANFPLQAKVEEE"
     gene            complement(4375..4977)
                     /locus_tag="SF008_000829"
     CDS             complement(4375..4977)
                     /locus_tag="SF008_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG8233110.1"
                     /translation="MKKILALILISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFADDYGAYYFLSNGSSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNTPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            complement(4988..5440)
                     /gene="smpB"
                     /locus_tag="SF008_000830"
     CDS             complement(4988..5440)
                     /gene="smpB"
                     /locus_tag="SF008_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEG8233111.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGRNLHDKRETLKKKQADLEAKAAMKNYK"
     gene            complement(5437..6204)
                     /locus_tag="SF008_000831"
     CDS             complement(5437..6204)
                     /locus_tag="SF008_000831"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEG8233112.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDLFDELELVDKE
                     SDSKKEFEIISNFKCENNIIQKAYLLLSKRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLINETLNLKLNLQELINLSMQLGSDIAFFLSGFHSANVSGCGEIIKEF
                     EDDIPNLKWTFPQIFCQTKAVYDEFDREIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDQ"
     gene            complement(6201..6428)
                     /gene="csrA"
                     /locus_tag="SF008_000832"
     CDS             complement(6201..6428)
                     /gene="csrA"
                     /locus_tag="SF008_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HEG8233113.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
     gene            complement(6422..7240)
                     /gene="truB"
                     /locus_tag="SF008_000833"
     CDS             complement(6422..7240)
                     /gene="truB"
                     /locus_tag="SF008_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEG8233114.1"
                     /translation="MNKIFAAFKPRGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIQNIKEFDLTNLKQII
                     NQMQGIISYTPPQFSAKRINGTRAYELAKKGIEVNLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYIDLKPNF
                     IKDLNKLENGAKIFVKELDFHDEGDYYIETEKYFSIINIKENTVKYLLNKVEKC"
     gene            complement(7237..9312)
                     /locus_tag="SF008_000834"
     CDS             complement(7237..9312)
                     /locus_tag="SF008_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEG8233115.1"
                     /translation="MNLFEDLNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAASVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIKYISYCKNEDKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSGVEAKEIAILFRVNALSRAIEEAFMKKQISYKLLNGMRFYERLEIKD
                     LISYLRLILNPSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLREKLKEDPKASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVAITRAKKFLTISVANSRFYHGSRANINPSRFLE
                     ESKLINEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            complement(9309..9746)
                     /locus_tag="SF008_000835"
     CDS             complement(9309..9746)
                     /locus_tag="SF008_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233116.1"
                     /translation="MLETILKNENFIHTMQKHCYEVISHLIEENIEFSIVANTNFIDF
                     NPELPKELDIKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQIENSILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            complement(9740..11461)
                     /locus_tag="SF008_000836"
     CDS             complement(9740..11461)
                     /locus_tag="SF008_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEG8233117.1"
                     /translation="MLEWDLSALFHDKESLQNFTQDQIQQSLNFKKNYENKLYTLNAN
                     EFLQALKDYENLNQALGKIMTYAYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELAPEKSREFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEILSKMYDEDRKIRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERKNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYNIAKNAFNQGWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNYTDKRRDLFTLAHELGHTIHQKLSYNVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     LSTEEINKIWMEESQRMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVGMFGFDIEDENFWEIGIKEIQKLINE
                     FMELQSC"
     gene            complement(11465..12352)
                     /locus_tag="SF008_000837"
     CDS             complement(11465..12352)
                     /locus_tag="SF008_000837"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEG8233118.1"
                     /translation="MRHLITTKDFNKVEIMELFKEASDFLDEKPRTFLEGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVLRSSSSKGETLYDTAANLDAMSPNAIVVRHAN
                     SGVPLILAKHMHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGDVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSDERTLVLKQVK
                     NGVAIRMAVLKKLILENEG"
     gene            complement(12362..13585)
                     /gene="sstT"
                     /locus_tag="SF008_000838"
     CDS             complement(12362..13585)
                     /gene="sstT"
                     /locus_tag="SF008_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HEG8233119.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIALGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFLASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSDIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFVVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVATMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYSISIPLGATINMAGAAVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            13725..14921
                     /locus_tag="SF008_000839"
     CDS             13725..14921
                     /locus_tag="SF008_000839"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEG8233120.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     DSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
BASE COUNT         4903 a         2247 c         2238 g         5587 t
ORIGIN      
        1 tttattatta aaaaggtgag ttttatgttt ggtgctaaga aaaataatac tgaaataatt
       61 gaacaacttg aaaaaaagtg taatggttta gaagatattt taagatctat tgggaatact
      121 atggcggtaa ttgaatttac caccgatggc gttattttag aggcaaatca aaatttttta
      181 acaactatga aatactccct ttcagagatc aagggtaagc atcatagtat gttttgtttg
      241 cctgaagttg ttaattcttc agcatataat gatttttgga aagatttaag agatggaaaa
      301 gctagaagtg gtctttttag acgtatagct aagggaggga tagatgttta tttagaagca
      361 aattatcttc caattagtga taataatggt tatgtttata aaattattaa atttgccaat
      421 gatataactc aaagacatta tgaaatgctt gatcttagaa atactattgc tgctgctaat
      481 cgttctatgg ctattattga atttaaacct gatgggacta ttattacggc taatgaaaat
      541 tttttaagaa ctatggattt taatattgat gagattaaag gaaagcatca tagcatgttc
      601 tgtgattcta attatagaca ctctaaggac tatgttcaat tttgggaaga tttaagagag
      661 ggcaaatttc aatcaggtaa atatataaga tacggaagaa ataataaaaa agtatacctt
      721 gaagcaagtt ataatccggt taaaaatgat gatggaaaaa tttacaaggt tattaaattt
      781 gctacagata taagcgaaca agttaaaaaa gatcaagaaa aactttgcct cataagcgaa
      841 cttgcagaaa aaaatgataa tcttactcaa gatggagatc gtgtaattga aaacactgtt
      901 tcaaatgttc agaatattgc tgatatgatg tctcaaagtt caaatcttgt ttcctcatta
      961 aatcaacaat cagatgaaat taaatctatt attcagacta ttagtgatat cgctgatcaa
     1021 actaatctgc ttgctttaaa tgctgctatt gaggcagcac gtgctggtga acatggtaga
     1081 ggctttgctg ttgttgctga tgaagtaaga aatttagctg aaagaacagg gcattcggtt
     1141 aatgaaatta ccactacgat taattctatt cgtaatgtta catcacaagt ggttgagagt
     1201 attaaaagcg gtttagagga tgttaatcag agtgttgaac ttgcaaaaga agcaagagag
     1261 tgtatggaga aaattcgtga aagctctgct gaagttgcta aagcgatgtc ataagcgtga
     1321 ttttcacgct tattttttaa gtaattaaat ctttaaaatt tttaaaacca ctttcttggt
     1381 tgcatttttc ttttaaaata tttaaaaatt ctttcctaga aatattatga gcgcccataa
     1441 attctaaatg ttggttataa acttgacaat ctatgataaa atcataaggt tttaataaat
     1501 cacaaagttt aatcatagca attttagatg catttttttt aatgcttacc atgctttcac
     1561 caaagaaaac cttgcctaaa attaaaccat aaattccacc tataagttca ttattttcat
     1621 aaagttcaag gctatgtgca tagccttggg taaataactt ataataagtg gtaataaatt
     1681 catcatctat ccagctttga gagcgtgtat cgcgacataa tgtaattaat tttaaaaaat
     1741 cataatcaag tttaatttga tagagattaa taaatttttt catatttttt tggatgtgaa
     1801 tttgatttgg aattaaaatg catctaggat ctggacacca ccaagttaca ggtttacttg
     1861 tccatgggaa tagaccaaaa gtataagctt ttacaataaa atcagcttct aaattttgac
     1921 ttaaaaatac aggagcattt ttaggtgcat tgagtaattt agaatataaa ttcgagcttt
     1981 ccatttttac caagtttgat tttagctata ccgccttttt taagctttcc gaataaaatt
     2041 tcatcactga ttttttctcc tatctcctca gaaattatgc gttttaaaag ccttactcca
     2101 aattctttat tataggcttt tttagctaaa taaattttag ctttatcatc cactgataac
     2161 tttatattat ttaaattttt agaaatttca tcaagttctt tttcgataat tttaacaagt
     2221 atagcatcgt ttaaatcatt aaaatgtaaa attttatcaa tacgattaat aaattctgga
     2281 gcaaaaaagt ctttgatagc acgattactt ttttcttcat ttttacttaa aaaaccaagc
     2341 tcattgcttt ctttaagtcc tagattagat gtcataataa tgattgtatt tttaaaatct
     2401 actttaagac cgctattgtc ggtgagttca gcattgtcaa aaatctgtaa aaaggtattg
     2461 cttaaatcag gatgagcctt ttctatttcg tcaaaaagaa caagactgaa aggatttttg
     2521 cgaatagcat tgcttaaaag tccaccctct tcaaaaccta tatatccagc tggagatcct
     2581 attagtttac ttatagcatg tttttctgca tattcactca tatcaaagcg ttctaaattt
     2641 aaacctaaaa attcagctaa agatttgcaa agttctgttt ttccaactcc acttgatcca
     2701 gtaaacaaaa acactccgcg tggtgtattg gaatttttaa atcctgcgaa actttgctta
     2761 agtgatgaaa caaggctatc tataacttca tcttggccaa aaatttttgc ttttaaattt
     2821 gtttttaaat tcattaaagc tttgttttga tcgaattcaa acattttatg atggtgggtc
     2881 atttttacta aaacattttc taaatctttt aaattggcat tttttttagc ttttggattt
     2941 aaagcaaaag aagccccaag ttcatcgatc agatctatag cacaatcagg taaaaattta
     3001 tcattaaaaa attttttacc ccaaattaca gcatattgaa gaatttcatc gtttaatttt
     3061 atatgatgaa attcttcata tttgtttttt aatcctttca gaatttgcaa gctttcttct
     3121 tggcttggtt catctacatt tattttagca aaacggcgac ttaggggttt atttttatca
     3181 aaagtatttt tatattccat aaaagttgtt gcacctatgc attttaaagt tccattactt
     3241 agagctggtt ttaaaagatt ggaaaaatca gtatgagatt ctcctgtact tccagctcct
     3301 actatagtgt gaatttcatc aataaataaa atagcattag gtattttctc aagttcattt
     3361 aaaatttctt taattctttt ctcaaaatct ccacggtatt ttgttcccgc aagtatacta
     3421 gccatatcaa ggctaaaaat ttttgcattt tgtaagtttt taggcacctt ttttttcgca
     3481 atagccaatg ctaatccttc tacaatggcc gttttgccaa ctcctgcttc tcctactaaa
     3541 ataggattat ttttcttgcg acgtgaaaga atttgcatca ttctttcaag ttcaaatttt
     3601 cttcctatta aaggatcaat cgtgccattt tgagctaaaa gtgttaaatc acttgtgtgg
     3661 ttgcttaaat tttgtatatt ttcatgattt tgaagttctt gaattttgtt aagatttatg
     3721 ttgtgttttt ttaagagata gctagaataa cttcttgaat cgtgtatgag cttttctaaa
     3781 aaatctataa ttttaatttc attattttta tttttagatg aaagtaagat ttcatctaaa
     3841 acaacagata ttgtaggttc tatttcttgt ttaataactt gattgttttg agaaatgtaa
     3901 ttttttaatt cagtttctag aagttcaaga tctccatctg aaaattcttc aaatatatcc
     3961 ttaaaatcag tgcttagttt tagtaatgca aacagtacat gctcacaggt aacaaattca
     4021 tggtggttta ttaagcttag atttttggca ttatcaagat atttttgtaa attttcttgg
     4081 tatttcattc ttcttctacc tttgcttgta gcggaaaatt ggcaagttta gccgaatcta
     4141 taactttttt ttgttttgaa agagctattt cctgggtgta aatgccacaa attccagaac
     4201 cattgtggtg aatttctaac attgtttgac ttgctttctc aaggttttga tgaaaaatat
     4261 tcatcaaaat ttctataaca aaatccatgg ttgttacatc atcatttaag agtataactt
     4321 tatacatttt tggttcacta agttttgttt gctctagagt ttgggttttt ggcattattt
     4381 tcctttgtag attttattta aatcttcttg catgagttct gttggaattt taccaagata
     4441 aaaatttgtt ggagtattat tattccagta atcgcttatt ttttgataaa ttccattttt
     4501 taaaacaact ttaaaaggaa gttgctccat attttgatag tctatatctt ttaaaatttg
     4561 agcaataata cgatcattag agctgccatt gcttagaaaa tagtaagcac cataatcatc
     4621 cgcgaatttt ttaactgttt catcgctaac atcttcaaaa tgtgtaagtc ctataatgat
     4681 aaatttgcta gaattatttt tccaaagttt gctaagatct aaagcttctt ctttacatgg
     4741 ggtgcaaaaa gtgccaaaaa aatcaaacat tagaactttt ccttcctctc cttctaccac
     4801 aaaaccttta tctgttctta ttaaagtttt gcttccacca tttacactat ttaagactat
     4861 tttatctcct ttgtgatact cttcaaacat aaaatcattt tgaatttctt cttccttgga
     4921 gcaagcatta agaaaaaatg ctaaacttat taaaattagg gctaaaattt ttttcattta
     4981 ttttccttta tttgtaattt ttcatagcag ctttagcttc taaatcggct tgctttttct
     5041 ttaaagtttc acgcttgtcg tgcaaatttc tccctttagc taaagcaagg gtagctttta
     5101 ctttattttt tgtgttaaaa taaagatcta atgcaacgat agtatatcct tctatactta
     5161 ctttacctaa taatttatca atttgctttc tatgcattaa aagctttcta gcacctcttt
     5221 cttcgtgttt atagaaagaa tgtgtagtat gaagcaatga aatatgagaa ttaagtaaaa
     5281 aaatctcatt ttttataatg cgaacaaaag agtctttaag atttgctctt cctgctctta
     5341 aggctacaac ttcacttcct ttaaggacaa ttccggcttc aaagcgttct atgatgctat
     5401 aatcaaataa agctttttta tttctcgcaa taattttcat tgatcaacct taaaaacact
     5461 actaccgcta ccgcttagaa aaaaatcttc ttgcaagtaa gacttcattt taggatataa
     5521 agttgcacaa ggagtaaata aatcatttaa ttctttgttt ttaaagtttt gtaacaactc
     5581 ttttgtgctg agttttttgt agatttgcgc ttgattattg tttttttgaa agtcaaatat
     5641 ttctctatca aattcatcat aaacagcttt agtttggcaa aatatttgtg gaaaagtcca
     5701 ttttaaatta ggtatgtcat cttcaaattc ttttataatt tcaccacagc cacttacatt
     5761 agcagagtga aagccactta aaaaaaaagc aatatcactt cctagttgca tgcttaaatt
     5821 tataagttct tgtaggttta attttaaatt tagggtttca tttattagca gtaaaaaact
     5881 cgcacaatcg ctacttccac cgccaagtcc agcacatact gggatatttt ttgtgagttt
     5941 taggcttttt ttgctaaata attcttttaa ttcgttatta tatcttttag aaagtagcaa
     6001 ataagccttt tgaataatat tattttcgca tttaaaatta ctaatgattt caaattcttt
     6061 tttagagtct gattctttat caacaagctc aagctcatca aaaagatctt ttaaaagtat
     6121 aaatcgtgat tctaaaagat gatattttct tgagtcaaaa ccggtaagtt ttaaaaaaat
     6181 atttgcttta gcgtaagctt tcatttgatt agttttttgc ttaagtcatc aagtttaata
     6241 tcattctgaa caacagaatg taaattttca tcctttactt gttgaacaag ttcttttcta
     6301 agtatcataa gggattttgg agcttctatg cctattttgg catatccttt ccctgtttga
     6361 acgactttga tttctatacc ttctccgata attatacttt cattttcttt tcttgataat
     6421 attaacattt ttcaacctta tttagaagat attttactgt attttcttta atattaatta
     6481 tgctaaaata tttctctgtt tcaatataat aatctccttc atcatgaaaa tctaattctt
     6541 tgacaaaaat tttagcacca ttttctagtt tatttaaatc cttgataaaa tttggtttta
     6601 ggtcaatgta ttttaacaca tttaagcttt tctcattatt ataaacaaat ttaccttctt
     6661 taatgcgctc taaagagctt aaagtcgcat taatacctag ttttctagca aaaagttcac
     6721 aataagatct tatataagca ccttcactga ctgtgatttc gatatttaaa aaaggatgat
     6781 tatagcttaa aatcttgcaa tcaaatactt ccatttgaca aggttttaaa tttacttcta
     6841 tacctttttt tgcaagttca taggcgcgag ttccattgat tcttttggcg ctaaattgcg
     6901 gtggtgtata ggagataatt ccttgcattt gattaatgat ttgttttaaa tttgtaagat
     6961 caaattcttt tatattttga atttctttta tattttgatc atcaagactt aaagagtaaa
     7021 ctccaagcca taaagtagct ttataggttt ttggagtttt ttttaaaaaa cggaaaagtt
     7081 ttgtgtattg tccaaatgca acgattaaaa cccctttggc gaaaggatca agagtgccag
     7141 aatatcctgc ttttttattt ttatattttt tctttaaagt gcttaaaaag gcattagagc
     7201 tcaaacccct tggtttaaag gctgcaaaga tcttgttcat actgcttttt ccacaaagct
     7261 tgccatgatt acacgcatta tgccaccaaa attaatatta agcttttcct cttttccgct
     7321 tttattaact tcaacaaccc tgccaatgcc aaaaatttta tgtttaacta gatctccttt
     7381 gcaaaaacta gttttttgta tattttgatt ttttgatttt tcattgatta atttactttc
     7441 ttctaagaag cggctaggat tgatgtttgc tcttgaacca tgataaaaac gagaatttgc
     7501 aacacttatt gtgagaaatt tcttggcgcg agtgatggca acataagcaa gacggcgttc
     7561 ttcttcgaga ttttcttcgc tatttaaagg aaaaaatcct tcatcaaagc ctattataaa
     7621 aacataatca aattccaaac ctttgctagc atgaatactc atcaagcaaa cacattcttc
     7681 atctaaatta tcttgatcgc ttaataaaga aatttcacta agtagatctt ctaaagaagc
     7741 tttgggatct tctttgagtt tttctcttag attagcataa aactcatcaa gatttctgat
     7801 tctttcatct ccatcatctt gctctgaaaa ataatcttta attttaaata attcttctat
     7861 attgtcaaaa accttttttg cattatcgta gctttttaga gtgtgaatat tttgtataaa
     7921 aatatttgct tcattttgtg ctttttttgt tgttaaaatt cctacaccac catcgctttc
     7981 gcatagggca tcaaaaagtg aaatttgacg tttttttgca tattcttcta aattttttag
     8041 ggctttttct cctatggatc ttttggggcg attaataata cgtttaaacg acaaatcatc
     8101 gcttggattt aagataagtc taagatacga gattaaatct tttatttcta atctctcata
     8161 aaaacgcata ccattaagta gtttataaga aatttgtttc ttcataaatg cttcttctat
     8221 tgctcttgat agtgcattaa ctcgaaataa aatggcgatc tctttagctt ctactccaga
     8281 atttagcaat tttttcactt cttgagcaat atataaacct tcatcttttt cgttttcgtt
     8341 ttttaatatt ttaatatttt ccccagtatc tttagtgcag attaaagttt ttccaagtcg
     8401 ttgctcattg tgagatatga gattatttgc tgcttgtaaa atagtcccta ctgaacgata
     8461 gttttgttca agttttacaa gtttaacatt tttaaaatcg ttttgaaaat ttaaaatatt
     8521 ttcaattttt gctccacgcc aactataaat actttgatca tcatcaccaa caactgtgat
     8581 attttcatgc atacaacata gattttttag aattttatat tgcaaggtat tggtatcttg
     8641 atactcatca actgtaatgt aattataaag taagctttgt tctttggcaa aatttatatc
     8701 attttctaaa atgagattgc ttagcaataa aagatcatca aaatctacaa aattttgttt
     8761 taataagtat tcttcataag cacggtaata gttggcaaat ttgtattcat tttgatattt
     8821 ttcaaaatta tgttctttta gtaaatttaa atcttcaaag acattgctta ctcttttgtc
     8881 ttcatttttg caataagata tgtatttgat aatatcatag acattatctt tgtttttatc
     8941 atggattaag tctttaatta ttttttttgt atcatctgta tcgataacaa taaaactatt
     9001 tttacgctcc aatctttcaa aatggagttt taaaaataaa agtccaaatt tatgaaaggt
     9061 acaaagcaaa ggattgtgat tgccttgcag aaaatttaat gctctatgac gcataacact
     9121 agctgcttta tttgtaaaag taagagtaag agtgttatgc gaggggatgc ctacttcacc
     9181 gataagataa gcaagacgag tggtaatagt tttggttttt ccactacctg cacccgctag
     9241 gataagcata gctccatcaa tgtgacttac cgcttgtttt tgactatcat ttaaatcttc
     9301 aaatagattc attttttgaa aatatcttta ttttttggat tatttaaaaa tatattttta
     9361 gatttttgta aatttttact atcttcgcgt ttataaaggc taaaattaac aaataaaatg
     9421 ctattttcta tttgaatttg cgtgatagct cctaaatcaa cctttacaaa actatcaaaa
     9481 tcatcatttc caaaacctgc gtgaaattga atgaaatctt tatttagttg tatggattca
     9541 aaggtgtatc ctccaagagc aaaaagagca taaggatttt gtttaatatc aagctctttg
     9601 ggaagttcag ggttaaaatc tatgaaattt gtatttgcaa ctatggaaaa ttctatattt
     9661 tcttctataa ggtgtgaaat aacttcataa caatgctttt gcatggtatg gataaaattt
     9721 tcatttttta agattgtttc tagcatgatt gtaactccat gaattcattg atgagttttt
     9781 gaatttcttt tatgcctatt tcccaaaaat tttcatcttc tatatcaaat ccaaacattc
     9841 ctactagttc ttttggactc acgcttccac ctaaagaaag cattttgata taaagttctt
     9901 taaaattttc acatttttta cttttgtaaa gtccataaag agctaaaact aaaagttgtg
     9961 cataggcata agcatagcag taaaaaggag aatggataaa atgaggaata taactccacc
    10021 aagaagcata attttttgta agttttacgc tgtcttgaaa catcctttga gattcttcca
    10081 tccaaatttt attgatttct tcggtgctaa gttcattttc ttgagcatgt aagcgtcttt
    10141 caaaacaagt aaaattaatt tgtctataaa aagttgcaaa aatatcttcg attttatttg
    10201 catataaaga taggagttct tcttttttta acttatcttt aataaaatca aatacgagca
    10261 tttcagcaaa aactgaagct gtttctgcgg tggttaaagg cgtgttttga tttaaatagc
    10321 ttacattata agaaagtttt tgatggatgg tgtgtcctaa ttcatgtgca agtgtaaaaa
    10381 gatcacgcct tttatcggtg tagtttaata aaacaaaagg atgtgcatca gaagttgcag
    10441 aatgtgaaaa agcaccccct tgtttatttt cttgtggata aacatcaatc cagccttgat
    10501 taaaagcatt ttttgctata ttataaaatt gcggagaaaa agcttgaaat gcctctaaaa
    10561 caatattttt acttgtttta aaatcaaaac ttgcttcttt tcctatgggt gcatatctat
    10621 catagtcttt aagctcatca tagcctaaaa tttgtttttt tcttttgtaa aattgcgata
    10681 ctaagttaaa atgtttttgc gcacttgcta tcaaagaatc aacgcttttt tgtgaaattt
    10741 gattgctgat atgtcttgaa atttcagcat tttcataacc tcttaataag cttatatttt
    10801 ttctttctgt ttttatcata ttgataataa aacttaaaag tctgctattt ttttgcaaaa
    10861 ctttactgaa ttttttagca gcttttttgc gtatctttct atcttcatca tacattttgc
    10921 ttagaatttc ttcttcgcta agttttttac cttcaaaagg gatttttaaa gcactcatac
    10981 tttcatcaaa aagtctacta aaagcatttg cacctgtatt tgaaagataa agcataatgc
    11041 gttcttcgtt tttgctaaga ttatagcgtt tgttttgcaa taaattagaa agataaaaat
    11101 cataatcttt gcaaaaagtt gtaaattctc gacttttctc aggagctaac tcgcaaaatt
    11161 caagctcgaa aaagagtaaa ttttcttcta tttttttgca ttcttcttcg tattgtgcgt
    11221 aaaaagaacc attttgagtg tttttagcaa aaagcaaata agcataagtc atgattttac
    11281 caagagcttg atttaaattt tcataatctt ttaaagcttg caaaaactca ttagcattta
    11341 atgtataaag tttattttca tagttttttt tgaaatttaa actttgttgg atttgatctt
    11401 gtgtaaaatt ttgcaatgat tctttatcgt gaaataaagc acttaaatcc cattctaaca
    11461 ttttttatcc ttcattttct agtatgagtt ttttaagaac agccattcta atagccactc
    11521 catttttaac ttgttttaaa actaaagtcc tttcatcgct catcatttca tcgcttatgt
    11581 caatattgcg attaacaggg cctggatgta gtaaaataag ctttttatcc tttactaagc
    11641 ttttttgaat gcaaaaatca tttgcatagt ctttaagtga agcataaacg gttttattat
    11701 gtctttctgt ttgtgttcta agactcatga taatatctga atttgctatg atattctcat
    11761 caagcttata atgtttttta agatgggtat taggcataaa atgtggtgga gctactaggg
    11821 taatatcaag attaaacctg cttaaaagtt ctatattgga cgctgcaacg cgggaatttt
    11881 taatatcacc tacgatgcaa atttttttac cttcgacatc gccttgaaaa tgattataaa
    11941 tagtaaataa atctagcaaa gcttgggtag gatgggcgtg ttttccatct cctccattaa
    12001 caactggaca atgcatatgc tttgctaata tcaaaggaac tcctgagttt gcgtgtctta
    12061 caacaatagc attaggactc atggcatcta aattagcagc agtatcataa agagtttctc
    12121 ctttgctaga gcttgatctt aaaacatcaa ggcgtaaaac cctagcacct aatcttcttg
    12181 cagcgctttc aaaagatgaa agggtgcgtg tagagttttc aaaaaaaatt gtcgtgatac
    12241 tttttccttc aagaaaagtt ctaggttttt catctaagaa atcacttgct tctttaaaaa
    12301 gctccataat ttcgacttta ttaaaatcct ttgtagtgat gagatgacgc atgtttttac
    12361 cttatttgat attgtaattt aattcatttt tagaacaaat tgctgtaaaa agaacatctg
    12421 tagaactatt taaagcagtt tcaacactat cttgaataac ccctataata aaacctatgg
    12481 caactacctt catagcaata tcatagtcta tattaaataa agaacaagcc aaaggtataa
    12541 gcagtaaaga tccgcccgca actccgctag ccccacaagc tgcaaaagtg gcaataatgc
    12601 ttaataaaaa ggcttgtaaa agactgattt ctataccaac ggtattggct gcagtaagac
    12661 ttaaaatagc tatagtaact gctgctcctg ccatgttgat agtagctcct aaaggtatag
    12721 aaatgctata aaattcttta tctatgccaa gtttagcgca aagtgccata tttacaggaa
    12781 tatttgccgc tgaacttctt gtaaaaaagg caaaaaatgc actgtgcctt aagcagataa
    12841 aaattaaagg aaaaggattt tttcttgtat aaaaaaagac tattaaggca ttgataacaa
    12901 aagtaacaaa aagcatagta gctacaagta aaattaaaag ttttacataa cttagcaaac
    12961 cttgtgctcc tgtttgtgct acagaattag ccacaagtcc aaaaattcca aaaggggcaa
    13021 gttttactac aaatttaacg atttttaaaa ccccttcatt gatatctata aaaacttgtt
    13081 ttgcttcgtt agaacagtgt tttaatgcta tacctccagc tattgcccaa gttaaaattc
    13141 ctaaataatt tccgcttgaa agagcattta tgggattatc gacaatttta aataaaagat
    13201 ctttgaaaat atcactcatg tgggttggag atgagtttgt agcagtttga actccatcta
    13261 aaacaagctt tacgggaaag aaaaaattag caagaaccgc acaagctgaa gcaagaaagg
    13321 tgcctactat atataaaata ataatatttt tgatcttagc accactttga gaaaaatctt
    13381 tagtgcaaat tgaggttaaa attaaaataa aaacaagcat aggagcgata gcttttaagg
    13441 cacttgtaaa aagtattcca agtaaatttg caatttcaga tatttcttta gaactaatgc
    13501 ctataagtat tcctagtgct atacctatac aaatttgaac tatgaggttg cctttagcgt
    13561 agctttgaat gattttagaa aacataaaaa ccttttaaat attttttata tcagaagttg
    13621 attttaacta acttttgctt aattttagag aatttttaat ttatcaagct ttgataagtt
    13681 tatttggata caattgtggt tcattttaaa tgaaaggact ttttatgtat ctattcactt
    13741 cagaagtcgt aagtgcaggt catccagaca agtgtgctga tataatcgct gatacgatag
    13801 tggatatact cttgaaaaat gacaaaaatt caagggtggc gagcgaggtt tttgtcgcag
    13861 gaaataaggt tgtgatagga ggcgaagtta agtcaaatca caaacttagt aaagctgatt
    13921 acgataattt agttaaagat gttttaaaaa acattggtta tgacggagca gggcatttta
    13981 gcaaagagca gtgtttgcat cctgatgaag ttgatgttat ggtgttttta aatgaacaaa
    14041 gccctgatat caatcaaggt gtcgatcaag aagatggcga aacaggagca ggtgatcaag
    14101 gtattatgtt tggttttgca agttgcgaag ctgaagaata catgccagca gctattagtt
    14161 atgcaagaat gctatgcgat agagtttatg cttatgcaaa agcaaatcca catgaacttg
    14221 gagtggatat taaaactcaa gtaactattg attatggcac taaggcgaat tttgaaaatt
    14281 gcaaaccgca aagtatccat actatagtag tttctgcacc ttgtgttgaa agtatgaaaa
    14341 tagaagattt aagatcttta gtgatgaaac ttatcttaga tagtaattta ccaaaagaac
    14401 tttttgatcc taataaaact agaattttaa tcaatccaac tggtaaatat gtcaatcact
    14461 cttctttaca tgatagtggt ttaacaggaa gaaaacttat agtagatagt tttggaggtt
    14521 attctccaat aggtggtggt gcgcaatcga gcaaagatta tactaaagtt gatagaagtg
    14581 gactttatgc aggtagatgg ttagctaaaa acatagttgc agcagggctt gctaaaaaat
    14641 gtatagttca acttagttat gctataggtg ttgcaaaacc tacttcggta agcgtggatt
    14701 gtatgggcac aaataccagt gtaaatgacg atgttttaag tgattttgta atgcaaaatt
    14761 tctctttaac gccaaattgg atccgtgata aatttcatct ggataaacca agtaaagaaa
    14821 cttttcttta tgcggatgta gcagctcgtg ggcaagtagg acaaaaggac tatccttggg
    14881 aaaaacttga tgctctagaa cagtttaaaa agctacttta aaaaattaac aatattatac
    14941 aagcttaaac aaggcttgta taattataaa gaatt
//
LOCUS       DARGEY010000033        14954 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.033, whole genome shotgun sequence.
ACCESSION   DARGEY010000033 DARGEY010000000
VERSION     DARGEY010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14954
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.033"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            73..357
                     /gene="gatC"
                     /locus_tag="SF008_000840"
     CDS             73..357
                     /gene="gatC"
                     /locus_tag="SF008_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEG8233121.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIAQLSEIVNFVEKLNELD
                     LDSQEITVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            425..988
                     /locus_tag="SF008_000841"
     CDS             425..988
                     /locus_tag="SF008_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEG8233122.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSAFYKIENQSLAGFAGFLAILIIFWIVCLLVGNFLSKLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHANEKLQDIVSDLNNTQKGE"
     gene            990..1463
                     /locus_tag="SF008_000842"
     CDS             990..1463
                     /locus_tag="SF008_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEG8233123.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCSDCNNQKAKVKI"
     gene            1464..2969
                     /gene="lysS"
                     /locus_tag="SF008_000843"
     CDS             1464..2969
                     /gene="lysS"
                     /locus_tag="SF008_000843"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEG8233124.1"
                     /translation="MFDNILEQQRIEKAKELKNLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFSKDSVGEELYTIL
                     KKNLEVGDIVLVKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNVEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLIVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMVNFSKPFERITYKDALCKYGGLDRDLI
                     EDKEKILTKLKADGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            2966..4210
                     /locus_tag="SF008_000844"
     CDS             2966..4210
                     /locus_tag="SF008_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEG8233125.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEVGAYLFADIAHIAGLVVAGEHPSPFPHAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLILMSFLDREFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDINNEKLQ
                     KNIKQELKKLASNFIIYERAMF"
     gene            4207..4752
                     /locus_tag="SF008_000845"
     CDS             4207..4752
                     /locus_tag="SF008_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HEG8233126.1"
                     /translation="MISPMDMSLIKIIGDHYYIRRDKIVNKITHRGRLFFDKFERVDA
                     PLNLNVMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDVPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            4766..5602
                     /locus_tag="SF008_000846"
     CDS             4766..5602
                     /locus_tag="SF008_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HEG8233127.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LINGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAEDQFEALRKQFQDEQ
                     NTTQNTTTSSSNNNDTTNFAMPDQEVPAEPTATTSENTTPQASTPKQEVTQTAKPKEE
                     AKKQTAVKKEKESAKQTPKKEQNANDLFKNVDAKPVHPSGLASGIYVQIFSVSNLDQK
                     SKELASVKQKGYDYKLYKTTVGGKEITKVLIGPFEKADIAVELAKIRKDIAKDAFSFT
                     LK"
     gene            5599..6387
                     /locus_tag="SF008_000847"
     CDS             5599..6387
                     /locus_tag="SF008_000847"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEG8233128.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAIKALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRSKKRFKDFLAYPTYLY
                     KNLQDFDFDLVINSTSAGLKDENLPCDRELLDRILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIQDKREMIKNAMQQALILK"
     gene            complement(6462..7361)
                     /locus_tag="SF008_000848"
     CDS             complement(6462..7361)
                     /locus_tag="SF008_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HEG8233129.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPID
                     SGVSIALEPINIEQNNNYSDYFENSVLKIRIEKEIDLLKQNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNAQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSNTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENTPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            7451..8266
                     /locus_tag="SF008_000849"
     CDS             7451..8266
                     /locus_tag="SF008_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEG8233130.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKTNPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            8335..9117
                     /locus_tag="SF008_000850"
     CDS             8335..9117
                     /locus_tag="SF008_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HEG8233131.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFEGKNVKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTQTTAMIKNYNGANYEYTI"
     gene            9101..11092
                     /locus_tag="SF008_000851"
     CDS             9101..11092
                     /locus_tag="SF008_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HEG8233132.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVTKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLNG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKHNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            11085..11810
                     /locus_tag="SF008_000852"
     CDS             11085..11810
                     /locus_tag="SF008_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HEG8233133.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRRQLVAQRNK"
     gene            11838..14024
                     /locus_tag="SF008_000853"
     CDS             11838..14024
                     /locus_tag="SF008_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEG8233134.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKSKLDTAECAIILSVNKDNY
                     ERYFLLKEFQELCKKIDLRVDIFSMQNAQICILNLFKSGFISKQDLLKALKILEKISK
                     NTEIFDFILQEKVQSIDQKALFQNDFKELNTINLELQKLSFDENLKSRLQKTLEKFQN
                     LEFNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETANLTVLSYGKSEEAKIYFWDKK
                     EWQNILESSHFNADLKEFIDKLDKSVNIEDFIKDKPLIQNIALCELKNFSSAKNKISA
                     LIKKIEIKSHLEFLKNNISIVDTPGLDDVVVQREIVTNEYLRESDFLIHLMNASQSLT
                     QKDADFLVHCLLNSRLSKFLIVLTKADLLSKKDLEEVIVYTKESLKSRLVDLDENLVE
                     KIDFLCVSAKMASDFYKGLAPKESLQKSGMQEFENYLFNELYAGEKSKIALRAYKKEL
                     HLELKNILSKYEMQNRLIKENKQGVSEENQKLLLELQKQNILLKEAQDEISNSIVKLK
                     NIDNGIDNLVLLLAKKLKERLIDEFKYLKNNAQKLNLSRILNIVDITTKDGINDILRE
                     IKFENIKKIEELKTNLSLKYDFLKDDFDNGFEGFKDGISKNIDSIFQSEKFALLRLKI
                     EKLSNLKSDLYELETNLDMVIFDTFKEFKMSEILNSLNINGAFFEFLNDKLKHYEKNQ
                     KSKLESLEKVLQSLKNQDINILNSFEENLEKIEKLKQLEMGLLNAD"
     gene            14014..>14954
                     /locus_tag="SF008_000854"
     CDS             14014..>14954
                     /locus_tag="SF008_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEG8233135.1"
                     /translation="MQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHAS
                     YALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILGCDCLPTGVVPVTFKPTFLR
                     YAKEYFLRVEFEDRSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTP
                     GLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLNTEELDNVLNYAKSVFLKYFDELIAISCKEAKDEQSYEKSNFQSLLDFLTQLDTT
                     ALKEKFVKRKILNLCEILEDENQLFVGIFDRLLNQFQ"
BASE COUNT         5325 a         1731 c         2828 g         5070 t
ORIGIN      
        1 atatcctaaa caatttaaag ctttttatga tataattttc aaaattttaa cttttttatt
       61 aaggtttaag aaatgcaaat agatgagaaa ttattaagca agcttgaaaa attaagtgct
      121 ttacaaataa caaaaaacag aaatgaaact attgcacagt taagtgaaat tgtgaatttt
      181 gttgaaaaat taaacgaact tgatttagat tcccaagaga ttactgtgag tactataaaa
      241 ggtggagctc ctttgaggat tgatgagata agaaatagca atgttattga tgaggtttta
      301 gattgtgctc caaaaaaaca agaacatttt tttgttgttc ctaaaatcat agaatgatta
      361 acttagcatt tagtgcttat ttgtagaata aatttaaaac aaaaaaaatc agagagtgat
      421 tgaaatgaat ttttattggt ttgatgcttt tattttagga tttaccttgc ttttagggct
      481 taagggtatt atcaatggtt tgataaaaga aatttttgga cttttgggta ttattggtgg
      541 tgtttttatt gcttcaaaat atgcaactca agcagctgaa tttatacaaa gtgcttttta
      601 taagatagaa aatcaaagct tagctggatt tgctggattt ttggccatat taattatttt
      661 ttggatagtt tgtttattgg tgggtaattt tctttctaag ttgattaaat taagtggcct
      721 aggtttttta gatcgtattg gtggctttat atttggtgga gcaaaaatct ttttaatttt
      781 tgcaattttg gttttttgtg tagcaagaat cgatttttta aatgataaat tagataattt
      841 tgctaaaaat agctatactt taaatttact taaagaaacg ggatctttta ttatgaatca
      901 acctttaaca gaaaatagtc tagatcatgc taatgaaaag ttgcaagata ttgtaagtga
      961 tttaaacaat actcaaaaag gggagtgata tgctgataga gaatgtggaa tatgatgttt
     1021 tacttgagag atttaaaaaa atattaagac aaggcggact taaatatact aagcaaagag
     1081 aagtgctttt aaaaactctt tatcacagtg atactcatta cacacccgaa agtttatata
     1141 tggaaatcaa acaagctgaa cctgatttaa atgtaggaat tgcaactgtt tatcgtactt
     1201 taaatttgct tgaagaagca gaaatggtaa cttccatttc ttttggttcg gcaggtaaaa
     1261 aatacgagct tgccaataaa cctcaccatg atcatatgat atgtaaaaat tgcggaaaaa
     1321 ttatagaatt tgaaaatcct attatagaaa gacagcaagc cttgattgca aaagaacatg
     1381 gttttaaact tacagggcat ttgatgcagc tttatggtgt ttgtagtgat tgtaataatc
     1441 aaaaagcaaa ggtaaaaata taaatgtttg ataatatttt agagcagcaa agaatagaaa
     1501 aagctaaaga gttaaaaaat ttagggatta atccttatcc tcatttttta gaaaaggaaa
     1561 tgtctttaaa gacttttaag gataaatttt cttatatttt agagcaagtt gaaaaaagag
     1621 atgaaagtgt caatgctgtt gttgcaggac gtttgaaact tttgcgtata gctgggaaat
     1681 caatttttgc aaacattgaa gatgaggata caaatttaca aatttatttt agtaaagata
     1741 gcgtaggcga agagctttat acgattttaa aaaagaattt agaggtgggt gatattgttt
     1801 tggttaaagg ttttcctttt gtaactaaaa caggtgaatt tagtttgcat gcaagcgaag
     1861 taaaactcgc tacaaaagct attgttcctt tacctgaaaa atatcatgga ttaacagata
     1921 ttgagcaaag atatcgtaaa cgttatgttg atatgataat gaatgtcgaa gttagaaaag
     1981 attttttagt gcgttctaaa gtggtgagtt taatccgtca tttttttgaa aataaaggct
     2041 ttttagaagt agaaactcct atgatgcatc cgattgcagg tggagcaaac gctaagcctt
     2101 ttgtaacttt tcataattct ttaggcgtag aaagattttt aagaattgct ccagaacttt
     2161 atcttaaaag acttatagta ggtggttttg aggcggtttt tgaaatcaat cgttgtttta
     2221 gaaacgaagg tatggattta actcataatc ccgaatttac aactatagaa ttttattggg
     2281 cctatcataa ttataaagat ttaatggatt taaccgaaga actttttgct ttacttttgg
     2341 ataaacttaa tttaggaaaa acaatagaat ttgatggaaa aatggtaaat ttttccaaac
     2401 cttttgaaag aataacctat aaagacgcac tttgtaagta tggtggttta gatagggatt
     2461 taatcgaaga taaggaaaaa attcttacta aattaaaagc agatggtttt gaagcgaatg
     2521 aaaagcttga acttggacat ttgcaagctg aactttttga caattatgtg gaagaaaaat
     2581 tgatcaatcc tacttttgtg attgattttc ctatttccat aagtccttta tcaagacgta
     2641 gcgatgagga ttctcagatt gctgagagat ttgagttgtt tatttgtgga agagaattgg
     2701 caaatggttt taatgaactt aatgatcctc ttgatcaata tgagagattt ttaaaacaaa
     2761 ttgaagctaa aaatgcaggc gatgaagagg cttgcgaaat ggatgaagat tttgtaaatg
     2821 ctttgggtta tggaatgcct ccaacggcag ggcagggtat aggcatagat agacttgtta
     2881 tgcttttgac gaataaaaaa tctattcgag atgtgatatt gtttcctgca atgcgtccat
     2941 taaaatcaga actaaaggag aaagaatgag tttagaaatg tttgataaag aaatttttga
     3001 tttgacaaac aaagagttag agcgtcaatg tgaaggtctt gaaatgatag cgagtgaaaa
     3061 tttcactttg cctgaagtaa tggaagttat gggaagtatt ttgacaaaca aatacgcaga
     3121 gggttatccg ggtaaaagat attatggtgg ttgtgaattt gttgatgaga ttgaaactct
     3181 agctattgaa agatgtaaaa aactttttaa ttgtaaattt gctaatgttc agcctaattc
     3241 aggttctcaa gctaatcaag gtgtttatgc ggctttgatt aatccaggtg ataaaatttt
     3301 aggaatggat ttaagtcatg gtggacattt aactcatggt gcaaaagtaa gttcttcagg
     3361 taaaatgtac gaaagttgtt tttacggcgt agaacttgat ggaagaattg attatgaaaa
     3421 agtaagagaa attgctaaaa aagaaaagcc aaaattaata gtttgtggag ctagtgctta
     3481 tgcaagagtg attgattttg ctaaatttag agaaatcgct gatgaagtag gcgcctatct
     3541 ttttgctgat atagcacata ttgcaggtct tgttgtagca ggcgaacatc caagtccttt
     3601 tccacacgct catgtagtaa gttcaactac gcataaaact ttgcgtggcc caagaggtgg
     3661 tattattatg acaaatgatg aagagcttgc taaaaaaatt aattctgcca tttttccagg
     3721 tattcaaggt ggtcctttga tgcatgtaat tgctgcaaaa gcagtaggat ttaaatttaa
     3781 tcttagcgat gagtggaaag tctatgcaaa acaagtaaga accaatgctc aagttttagc
     3841 taatgtttta atggatagaa aatttaaact tgttagcgat ggaacggata atcaccttat
     3901 tttaatgagt tttttagatc gtgaatttag tggaaaagat gcagatttag ctcttggaaa
     3961 tgcaggtatt actgcaaata aaaataccgt tccaggagag attagaagtc cttttatcac
     4021 aagtggatta agacttggaa ctccagccct tactgccaga ggttttaaag aaaaagaaat
     4081 ggaaattgtg tcaaattata ttgcagatat tttagatgat attaataatg aaaaattaca
     4141 aaagaatatt aaacaagaat taaaaaaact tgcaagtaat tttattattt atgaaagggc
     4201 tatgttttga tttcaccaat ggatatgtcg ctaattaaaa taattggcga tcattattat
     4261 ataagacgcg ataaaattgt aaataaaatt acacatagag gtcgcttatt ttttgataaa
     4321 tttgaaagag ttgatgctcc tttaaattta aatgtcatga gagaacacgc tgctaaaaaa
     4381 attgttgtcg ctcatgattt aataacaaaa gataataaag tagaaaatat tgtctttgat
     4441 tataatggtt ttaatgctga aagattttat caccgtgcac aacttatttt aagagaagaa
     4501 ggttttataa atttcacagc ctataagact aaaactccag gacatttaca tctttatatt
     4561 cataaaggac atacggcgtt aaacgaaggt tattctttag cgtctaaact ttcaatgatg
     4621 tttgcaagta aaatgccagt agaatggaag gtgtttccta gcatggatgt acctagggaa
     4681 tttaatattt taatattgcc ttatgaggtt tatcaaaaag aacgaggaag ttcttggtct
     4741 aagcatatgt aagaaaggac aaattatgga aaatcaaaaa aatgaatttg atgatattat
     4801 tttagaaaaa agtaataaaa gtgaaaaagt aaaaaaaatt cttttacgag ttattgcttt
     4861 agttattttg tttttagcta tcatgatagt tatgaagctt attaatggta gtggtgatga
     4921 aaatacgcaa aatcaaagtg tattgccaag tgaacctata gcaactcaag acaataacaa
     4981 tgatacttct tttgaaagta tgccaattac agataatact tcagcagaag atcaatttga
     5041 ggcattaaga aaacaatttc aagatgaaca aaatacaact caaaatacaa caacctctag
     5101 ttcaaataac aatgatacta caaattttgc tatgcctgat caagaagttc cagcagaacc
     5161 aacagcaact acttcagaaa ataccactcc acaagcaagt actcctaaac aagaagtaac
     5221 acaaactgca aaacctaaag aagaagcaaa aaaacaaaca gctgtaaaaa aagaaaaaga
     5281 aagtgcaaaa caaaccccta aaaaagaaca aaatgcaaat gatttattta aaaatgttga
     5341 tgctaaacct gtacatccaa gtggtttagc atcgggtatt tatgtgcaaa ttttctcagt
     5401 aagtaatttg gatcaaaaat caaaagaact tgcttctgta aagcaaaaag gttatgatta
     5461 taaactttat aaaactacag ttggaggtaa agaaattacc aaggttttaa taggaccatt
     5521 tgaaaaggca gatattgcag tagaacttgc taaaatccgt aaggatattg caaaagatgc
     5581 tttttctttt actttaaaat gaaattttta gcagttatag gcgatcctat ttctcactct
     5641 aaatcgccta gaatgcataa taatgctatt aaagccttag ggcttgatag catttataca
     5701 cgctatcatt taagaaatgc taactgttta agagaagatt tttttaaatt aggacttagt
     5761 ggagctaata ttactttgcc ttttaaggaa aaagctttag atattgctga tgtgaaggat
     5821 gattttgcta gaaatattgg ctctgcaaat actttatgct taaaagaaga taaaatttac
     5881 gcttataata ctgatgcttt aggtttttta gaagctatta aggattttga taatataaaa
     5941 aaagctttga ttttgggtgc tggaggtaca gctttggcgc ttgcttatgc attaaaacaa
     6001 aaaggcgtag aagtgtatat agctaatcgt agtaaaaaaa gatttaaaga ttttttagct
     6061 tatccaactt atctttataa aaacttgcaa gattttgact ttgatttggt tataaattca
     6121 acttctgctg gattaaaaga tgaaaattta ccttgtgata gagagctttt agatagaatt
     6181 ttacctaaag ctaaatttgc ttttgaggta atttatggca gagaaacacc tttttataga
     6241 ttgtgtaaag agtatcattt aaaaattaaa gatggacttg atatgctttt atggcaagga
     6301 gtttttgctt ttgaactttt ttttgaaata caagataaaa gagagatgat aaaaaatgca
     6361 atgcaacagg cattgatttt aaagtagaat gatagttatt tttcttgtat aagaaaatct
     6421 tattttttgt gtgagaaagt ttaattttcc cacaagtttt atcattcaaa tatttctacc
     6481 ccatcttgat ttttactttg attattttga tttgttgaag atggatttgt aggaatattt
     6541 tgtgtaggcg tgttttcaat tgtattattt tgattagaat ttgtttgagg taagctttct
     6601 tcaaaggtag catcgccatc aaaactatta aaaccactgt ttgtattagg tatagttttg
     6661 cctatgtctg ttgcttttgg tagattgtta taaagtgtat ttaatgtatt tttataaaaa
     6721 gctaaaaaac ttttatcaat ttcaaaagca ggttgctcta aacctttatt gagttgagtt
     6781 ggtacggtag agatagtagt tttaaacata ttaaccccat catcattttt aataggatag
     6841 ttaagcgcaa ctaaagaatc tagtttagtg ttacttgaaa gattagttga attttgtgga
     6901 ttgtgtgcat ctataaaatc tattttacct ttaaaattta tacctaaatt ggattttaca
     6961 taatctccac tcataaaatt gcttgttttt tgtgcatttt tttcttccgt ataaatactg
     7021 attgaacttt taagagtgta gtctggatta gtagtaacta ttttatagcc ttttagttga
     7081 gcgatggttt tgatctgctc ttctaaattt tgttttaaaa gatcaatttc tttttctatg
     7141 cgaattttaa gcactgaatt ttcaaaataa tcagaataat tgttattttg ttctatatta
     7201 ataggctcaa gagcaatgct tactccagaa tcaataggtt caacctttgt tggaacttgg
     7261 ggtttaaaat ttggcataga aacattgaca aaattactgc ttgtaccccc acaagctgct
     7321 aaaattaaca tactactagc aagtaaaata tattttttca ttttttacct ttatttaatg
     7381 tgtttgtgtt aattatagca agttaaagtt tttttgttat atttttataa aagaaaatta
     7441 ggaaagatat atggaatttt ggcagcatat ttattcaaat tttaatgtta tagcttttag
     7501 catctttggt ttaaaggtgc attggtatgg cattatgtat gttatagctt tgcttttggc
     7561 tttgcttttg gctaaatttt ttgtaagaaa atttcaacta gacattaatg aaaaacattt
     7621 ggatagttat tttatatggg ttgaaatagg ggttatttta ggtgcaaggc ttggatatat
     7681 tttgatttat gatgcaaata ctatgtatta tattactcat ccttggcaaa tttttaatcc
     7741 ttatattaat ggtgaatttg taggtattcg aggtatgagt tatcatggag caattatagg
     7801 atttttgata gctactttat tgttttgtaa aaaatataaa acaaatcctt ggatttttct
     7861 tgatttggtt gctttaagtg ttccattggc ttatgttttt ggtcgtatag gaaatttttt
     7921 aaatcaagag ctttttggtc gcattacaaa tgtgccttgg ggaatttatg ttgatggagt
     7981 attgcgccat ccatcgcaac tttatgaagc atttttagaa ggtattgttg tttttattat
     8041 agtttattta gcaagattta agcaaagttt tcaaggggaa ttgattcttg tgtatgctgg
     8101 tgcttattca ttggcaagat ttatatgtga attttatcgc gagcctgatt ttggtatagg
     8161 ttttgtttta tggggtatga gtatggggca aattttaagt tttataatgt ttataacagc
     8221 tttgttagtt tatatttgta taaagtttaa aaaagtaaat atttaatcta tcttaaagac
     8281 ttttgtaata taatgaaatg gattttttta atttcttttt acaaaggagt aaagatgcgt
     8341 gagcttatcg aaggttattt gggtaagagc attgagggca aaaaaagtaa aatgcctgcg
     8401 aaattagact ttatccaaag cgcctcaggg ctttttttag gtctttttat gtgggtgcat
     8461 atgctttttg tttctacaat tttagtcagt gaggattttt ttaattctgt ggtacatttt
     8521 ttagaattaa aatttgttta cgataatcct gttatgagtt atcttacttc atttttagcc
     8581 gcctgtgttt tagtggtttt tttcgttcat gctttacttg caatgagaaa atttcctatt
     8641 aattaccgtc agtatcaaat actaagaaca cacagtaaaa aaatgaatca cagcgatact
     8701 tcgttatggt gggttcaagc ttttacaggt tttattatgt ttttcttagg ttctgctcat
     8761 cttattttta ttgtaaccaa tgcagataaa atcagcggcg atatgtcagg agatagggtt
     8821 gtaagtcatt ttatgtggct tttttatgct gttcttttag tctgtgttga acttcatgga
     8881 agtatagggc tttatagact ttgtgttaaa tggggttggt ttgaaggaaa aaatgtaaaa
     8941 gaaagtcgca aaaagcttaa aactgctaaa tggataatca gtattttctt cctagtttta
     9001 ggtgtgttaa gtcttgcagc atttataaaa ataggttatg aaaactacca aaatcaaacc
     9061 caaactactg cgatgataaa aaactacaat ggagcaaatt atgaatatac aatatagtga
     9121 tgctttagta ataggcggag gattagcagg tcttagagcg gctattgaag tagcaaagag
     9181 tggccaaagt gtaacacttt taagtatttg tccagtgaag cgttctcact ctgcagcggt
     9241 gcaaggaggt atgcaggcaa gtttagcaaa tggggcaaaa ggtgagggtg ataatgaaga
     9301 tcttcacttt gcagatacag taaaaggaag tgattggggc tgtgatcaag aagtagcaag
     9361 aatgtttgct caaactgcgc caaaagcagt gcgtgagctt gcggcttggg gtgtgccttg
     9421 gactagagtt actaaaggtc caagaactgt tgtaatcaat gcacaaaaaa ctgtgattga
     9481 agaaaaagaa gaagcgcacg ggcttattaa tgctagagat tttggtggaa ctaaaaaatg
     9541 gagaacttgc tatatcgcag atgcaacagg gcattgtatg ctttatggtg tagcaaatga
     9601 agctattaaa catcaagtaa aaattattga tagaatggaa gcagtaagaa ttatccatga
     9661 tggtaaaaaa tgcttaggtg tgatcgctag agatttaact aatggacaac tcattgctta
     9721 tattgcaaga ggaaccatga tagcaacagg gggctatggt agaatttata aacaaactac
     9781 aaatgcggta atttgtgaag gaacaggtgc agccatcgct cttgaaacag ggctttgcag
     9841 actttcaaat atggaagcag tgcaatttca tccaactcct attgtgccaa gcggtatttt
     9901 gcttactgag ggctgtcgtg gtgatggtgg aattttacgc gatgtggatg gatatcgttt
     9961 tatgcctgat tatgaaccag agaaaaaaga acttgcaagc cgtgatgtgg taagtcgtag
    10021 aatgatggaa catattcgta aaggcaaagg tgtaaaaagc ccttatgggg atcatttatg
    10081 gcttgatatt tctatacttg gaagagctca tgtggaaaaa aatctccgcg atgtacaaga
    10141 tatttgtaaa acttttaatg gtattgatcc agcagatgag ggtccaaaag gttgggcgcc
    10201 agttcttcca atgcagcatt attctatggg tggaattaga actaaaccaa cgggtgaaag
    10261 tcaatggtta aacggacttt ttgcttgtgg agaagcagct tgctgggata tgcacggatt
    10321 taatcgttta ggtggaaatt catgtgctga aactgttgta gcaggtatga tagtgggaga
    10381 ttattttgca gattattgta aaaataatgg tgaagtaatt gacacaaatg tagtaaaaga
    10441 cttcttaact aaagagtatc aatatttaaa atctttagta gataaagaag gtaaacataa
    10501 tgtttttgaa atcaaaaaca gaatgaaaga aatcatgtgg gataaggtgg ccatctttag
    10561 aacaggtgaa ggtttgaaag aagcagtaga tgaacttgaa aaactttata aagattctca
    10621 agacgttaaa gtacattgta aagaacttga ttgtgcaaat ccagagcttg aagaagcgta
    10681 tagagtgcca agaatgttaa aaatagcact ttgcgtagct tatggagcgc ttttaagaac
    10741 agaaagtcgt ggggcgcatt atagggaaga ttatccaaaa agagatgatt taaattggat
    10801 gaaaagaacc aatacttttt gggtagaagg cgaaacctta ccacgcatag aatacgaaga
    10861 gcttgatatt atgaaaatgg aaattccacc agcattccgt ggatacggtg ctaaaggaaa
    10921 tattatagaa aatcctttaa gtgaaaaacg ccaagctgaa gtggatgcta tccgtgaaaa
    10981 aatggaagct gaaggcaaag gtcgttatga aattcaaaac gccttaatgc cttatgaatt
    11041 gcaagctaaa tataaagcac caaaccaaag aataggagtt gattatgagt agaaaattga
    11101 caataaaggc atttaaatac aatcctttaa gcaaaatttc taaaccacat tttgtgactt
    11161 atgagcttga agaaactcct tttatgacgg tttttgtatg tttgactttg atccgtgaaa
    11221 aaatggatgc agatctgagt tttgactttg tttgtcgtgc agggatttgc ggatcttgtg
    11281 caatgatgat taatggagtg ccaaaacttg cttgtaaaac tttgactaaa gattatcctg
    11341 atggagtgat agagcttatg cctatgcctg catttaggca tattaaagat ttaagcgtga
    11401 atacaggcga gtggtttgaa gacatgtgta agcgtgttga aagctgggtg cataatgaaa
    11461 aagaaactga tatttctaaa cttgaagaac gcattgagcc agaagttgcg gatgaaactt
    11521 ttgaacttga tcgttgtata gagtgtggaa tttgtgtagc ttcttgtgca actaaactta
    11581 tgcgcccaaa tttcatagct gctacagggc ttttaagaac agctagatat ttacaagatc
    11641 cgcatgacca tagaagcgtg gaagattttt atgaattagt aggcgatgat gatggtgttt
    11701 ttggttgtat gtcattgctt gcttgtgaag ataattgccc taaagaatta cctttacaaa
    11761 gtaaaatcgc ttatatgaga agacaacttg tcgctcaaag aaataaataa atctttcccc
    11821 tttttaaggg gaagattgtg aaagaattat tccaaaaaat ttggcaaaat gaactccaat
    11881 ttttaaattt tgatgctaaa tttcaagata aaagcaaact tgatacagcc gagtgtgcga
    11941 ttattttaag tgtcaataaa gacaattatg aaagatattt tctcttaaaa gaatttcaag
    12001 agctttgcaa aaaaattgat ttaagagtgg atatttttag tatgcaaaat gctcaaattt
    12061 gtattttaaa tctttttaaa tcaggtttta tttcaaagca agatttactt aaggctctaa
    12121 aaattttaga aaaaatttcg aaaaataccg aaatatttga ttttatttta caagaaaaag
    12181 ttcaaagtat agatcaaaaa gctttatttc aaaatgattt taaagaattg aacaccatta
    12241 atttagagct tcaaaagcta agttttgatg aaaatttaaa atcaagactt caaaaaactt
    12301 tggaaaaatt tcaaaattta gagtttaata tagccatcac tggcgtgatg aatgcaggaa
    12361 aatcaagtct tttaaatgct cttttaaaag aagatttttt aggggtttca aacatacctg
    12421 aaacagctaa tttaacagta ttaagctatg gtaagagtga agaagcaaag atatattttt
    12481 gggataaaaa agaatggcaa aatatacttg aaagttcgca ctttaatgca gatttaaaag
    12541 aatttattga taagctggat aagagtgtaa atatagaaga ttttattaaa gataaacctt
    12601 tgatacaaaa tatcgcactt tgtgagctta aaaatttcag ttctgctaaa aataaaattt
    12661 cagctttaat taaaaaaata gaaattaaaa gtcatttaga atttttaaaa aataatattt
    12721 ctatagttga tactccaggg cttgatgatg ttgtagttca aagagaaatt gttacaaatg
    12781 agtatcttag agaaagtgat tttttaattc atttaatgaa tgcttctcaa agcttaactc
    12841 aaaaagatgc agactttttg gtgcattgtc ttttaaattc aaggctgagt aagtttttaa
    12901 ttgttttaac taaagcggat ttgttaagca aaaaggattt agaagaagtc attgtttata
    12961 ccaaagaaag cttaaaatca agacttgtgg atttagatga aaatttggtt gaaaagattg
    13021 attttttatg tgtgagtgct aaaatggcaa gtgattttta taagggttta gcacctaagg
    13081 aaagtttgca aaaaagtggt atgcaagaat ttgaaaacta tctttttaac gagctttatg
    13141 caggagaaaa aagcaagatt gccttaagag cttacaaaaa agaattacat ttggaactta
    13201 aaaatattct aagcaaatat gaaatgcaaa atcgtcttat taaggagaat aaacaaggtg
    13261 taagtgaaga aaatcaaaag cttttacttg aacttcaaaa gcaaaatatc ttattaaaag
    13321 aagcacaaga tgaaatttca aattccattg taaaacttaa aaatatagat aatggtatag
    13381 ataatcttgt tttacttttg gctaaaaaat taaaagaacg cttgatagat gagtttaaat
    13441 atttaaaaaa taatgcacaa aagcttaatc tttctcgtat tttaaatata gttgatatta
    13501 ctacaaaaga tgggattaat gatattttaa gagaaattaa atttgaaaat attaaaaaaa
    13561 tcgaggagct taaaacaaat ttgtctttaa aatatgattt tttaaaagat gattttgata
    13621 atggttttga aggttttaaa gatggaattt caaaaaatat agatagtatt tttcaaagtg
    13681 aaaaatttgc acttttaaga ttgaaaattg aaaaattaag caatttaaaa tcagatttat
    13741 atgagcttga aacgaattta gatatggtta tttttgatac ttttaaagaa tttaaaatga
    13801 gcgaaatttt aaattcttta aatatcaatg gagcattttt tgagttttta aatgataaat
    13861 taaaacatta tgaaaaaaat caaaaatcaa aattagaaag tcttgaaaaa gttttacaga
    13921 gtctgaaaaa tcaagatatt aatattttaa attcttttga agaaaattta gaaaaaattg
    13981 aaaaattaaa acaacttgaa atggggcttt taaatgcaga ttaatctttt aaatgatttt
    14041 ataaaagcct atgaaaatac ttatagtgtg agttttgatg atagttttaa agggcgtatt
    14101 caagagcttt gcaaggaact taatgagcct tttatgcatg caagttatgc tttagaaaat
    14161 gaattaaaag agcttgtatt ttctttggat aagaatgtta atatcgctat tatagggcag
    14221 ttttcaagtg gtaaatcaag tttactaaat ttgatcttgg ggtgtgattg tttgcctacg
    14281 ggtgttgttc ctgttacttt taaacctact tttttacgct atgcaaaaga atatttttta
    14341 agagtagaat ttgaagatag aagtgatatt atcacaaata tagaaaaatt agccttttat
    14401 acggatcaaa gaaatgaagt aaaacaagca aaaagtttgc atatttttgc acctattcct
    14461 ttacttgaaa aaatcactct tgtagatact ccgggtttaa atgcaaatga aaatgatact
    14521 ttaacaactc ttgatgagct taaaaatatt catggagcga tttggttaag tttgattgat
    14581 aatgcaggca aaaaaagtga agaagatgcc ataaaagcaa atttagaact tttaggagaa
    14641 aatagcattt gtgtattaaa tcaaaaagat aaattaaaca cagaagagct agataatgtt
    14701 ttaaattatg caaaaagtgt atttttaaaa tattttgatg agcttattgc catttcttgc
    14761 aaagaagcta aagatgagca aagctatgaa aaatctaatt ttcaatcttt gcttgatttt
    14821 ttaactcagc tagatacaac agctttaaaa gaaaaatttg ttaaaagaaa aattttaaat
    14881 ttatgcgaaa ttttagaaga tgaaaatcaa ctttttgtag gtatttttga tcgtttatta
    14941 aatcaatttc aaag
//
LOCUS       DARGEY010000034        13859 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.034, whole genome shotgun sequence.
ACCESSION   DARGEY010000034 DARGEY010000000
VERSION     DARGEY010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13859)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13859)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13859
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.034"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..132)
                     /locus_tag="SF008_000855"
     CDS             complement(<1..132)
                     /locus_tag="SF008_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEG8233136.1"
                     /translation="MFISKIIISEDFLGIKEEMINNFGIKKLRFFIPQNEFLLDDARA
                     "
     gene            complement(138..674)
                     /locus_tag="SF008_000856"
     CDS             complement(138..674)
                     /locus_tag="SF008_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HEG8233137.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKATRPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSASDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSKVQLG"
     gene            complement(675..1877)
                     /locus_tag="SF008_000857"
     CDS             complement(675..1877)
                     /locus_tag="SF008_000857"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEG8233138.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVANRVIQSAQQGNQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVTSALLSIALNEKGCPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNIEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            complement(1879..2349)
                     /locus_tag="SF008_000858"
     CDS             complement(1879..2349)
                     /locus_tag="SF008_000858"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HEG8233139.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIARRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGVTININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVKVIKYFEKKGYI"
     gene            2450..3517
                     /locus_tag="SF008_000859"
     CDS             2450..3517
                     /locus_tag="SF008_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEG8233140.1"
                     /translation="MHFYIHIPFCESKCNYCAFTSLKKNDYEKAYFKALKEDIIFQLK
                     QFNIQSNQIKTLFIGGGTPSCVNAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWL
                     KNMKNLGVNRISFGVQSFHPKKLHFLGRIHNQEMIIKTLENANKVGFKNINLDLIYDT
                     KLDNKKMLEFELLHLKQIKDLITHLSAYNLTIESNTAFAKKEHFKKNAPNLMKFFIKQ
                     LLELDFFQYEISNFSKTKAQICKHNLAYWQGKNYLACGLSAVGFYENKRFYAAKNLKN
                     YIENPTFRSIEQLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKDKINILLKEKKLFYK
                     NKRYFNPNFLISDELTLYLSS"
     gene            3576..3992
                     /gene="tatB"
                     /locus_tag="SF008_000860"
     CDS             3576..3992
                     /gene="tatB"
                     /locus_tag="SF008_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HEG8233141.1"
                     /translation="MSFGEIIVILVVAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDKVKNNLSGQNLNTEEKPNLSKLETQDKNGKINV"
     gene            3985..4722
                     /gene="tatC"
                     /locus_tag="SF008_000861"
     CDS             3985..4722
                     /gene="tatC"
                     /locus_tag="SF008_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEG8233142.1"
                     /translation="MFEELRPHLIELRKRLFISVACIVVMFIVCFALRSYILDILKAP
                     LIAVLPEVAKHVNIIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFALGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKVGLIDDSFLKRHFRIAVLVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPVPKDKESNE"
     gene            4715..5743
                     /gene="queA"
                     /locus_tag="SF008_000862"
     CDS             4715..5743
                     /gene="queA"
                     /locus_tag="SF008_000862"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEG8233143.1"
                     /translation="MNKDLLLSSYDYTLANELIANYPTNPKEDARLLVFDRKNKEIFH
                     TTFKNLHDFLPNCAIFFNDTKVIKARIYGNKASGGKIELFLHQPFLNSHNPLFLAQIK
                     GRVKKDEILYFKEDLKARVVELLNDGLRKVQFFQNDKTLDTSNLYNLLDKIGHIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG
                     TFKSVECENIQEHKMHSEFFNIPQQACEIIDSKQAILGVGTTVTRTIEYYTRTKTKNG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYELAIKEKYRFYS
                     YGDAMLIL"
     gene            complement(5732..6697)
                     /gene="lpxD"
                     /locus_tag="SF008_000863"
     CDS             complement(5732..6697)
                     /gene="lpxD"
                     /locus_tag="SF008_000863"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HEG8233144.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCDGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAINFKEKSQD"
     gene            complement(6694..7158)
                     /gene="ilvN"
                     /locus_tag="SF008_000864"
     CDS             complement(6694..7158)
                     /gene="ilvN"
                     /locus_tag="SF008_000864"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEG8233145.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            complement(7155..8855)
                     /locus_tag="SF008_000865"
     CDS             complement(7155..8855)
                     /locus_tag="SF008_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HEG8233146.1"
                     /translation="MKELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHAADAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYSKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELIKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENFNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKTINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISSKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            complement(8873..9316)
                     /locus_tag="SF008_000866"
     CDS             complement(8873..9316)
                     /locus_tag="SF008_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HEG8233147.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDAIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLVMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            complement(9328..10347)
                     /locus_tag="SF008_000867"
     CDS             complement(9328..10347)
                     /locus_tag="SF008_000867"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HEG8233148.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEACGVVCVALDETLAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTTQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
     gene            10440..10514
                     /locus_tag="SF008_000868"
     tRNA            10440..10514
                     /locus_tag="SF008_000868"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10472..10474,aa:Gln,seq:ttg)
     gene            10548..10623
                     /locus_tag="SF008_000869"
     tRNA            10548..10623
                     /locus_tag="SF008_000869"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10581..10583,aa:Met,seq:cat)
     gene            complement(10645..11517)
                     /locus_tag="SF008_000870"
     CDS             complement(10645..11517)
                     /locus_tag="SF008_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HEG8233149.1"
                     /translation="MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDL
                     NERLTFMPIKKENGRYVLESFALEKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSH
                     RVNKVLMVKNEGFQKVDYELFKDLSVAILKHNVLNFFYKEKERQIKPYKLVNYKGIWY
                     LLGDENDKLKHFNLDKISKLHTKNENFIPDEKLEEQIQNDPNIWLGESKEVILKLDKN
                     AKEYFFRKEILSNCQIIDEDETSYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKTR
                     LENILKSYLNNLSK"
     gene            complement(11514..12581)
                     /locus_tag="SF008_000871"
     CDS             complement(11514..12581)
                     /locus_tag="SF008_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8233150.1"
                     /translation="MNHLLILYNPYYQEDVIKQHLSILQEKSQVAFGKIKSKLNDQEK
                     QNFLEEIYQSTNEENFLQLFLSDYANLFVAKVVKISKNVDESLIPSYYKEKNLEVEDF
                     FIISDLRELVREDFSLLRDKFLANFITPNDHTYAIYGNNYTYPLPVRLKEECFYFLGD
                     EKHYLSVYKSKEYLAMQENFIRFVFGKRIFYLLHPDSISNIIHAELELLQSENDLLND
                     FTSIVVKYSKTLEYEIYAFAKKVLLKACMKDLSLYDLTYNVQGKSFILKDFFTQKPNL
                     GSIKFLLRHENIQYHLGKSLTQFINYPFSKSLTIIQEIRNEAVHAKAPSLNEVKKLRN
                     EILGIEGVSLLKRILTHKEIS"
     gene            complement(12590..13747)
                     /locus_tag="SF008_000872"
     CDS             complement(12590..13747)
                     /locus_tag="SF008_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233151.1"
                     /translation="MITYSNLSDVKKRIEDEFTHRNAECDKYDYLIAITCGAIAGIMD
                     IFLVGNPKDSYLGKKVDKTVEKMTQKFAQLCGWDKQKALDKNKDLTKSAIAFLENKFK
                     INYDQTTTNGRNGTNGKVDNLSMKNHHLKSIGHSPDIFGLFVSIVNQFTNTSTFVSNG
                     KIITIDTNTFELQGGNFIAKIFCGFFNWFGHLASDWCGSSGGKERGAGIPMPFYNLFL
                     LCDFGNFGQHRQTLAQIATQVFEQGYDLRHGVTMSIPVMINEMLIRFIYIIKAKFYHK
                     KEWKECIPKDDIPELNKMLLIGSGTFLLIDTGGAWIKSKNPITNPVVFLSEINLINVI
                     RFSTLILKEIYILYNNGKIDNKKLEKYLDDTCKILLIEAHNKSKPFKEILK"
BASE COUNT         4584 a         2471 c         1810 g         4994 t
ORIGIN      
        1 cgctcttgca tcatcaagta aaaattcatt ttgtggtata aaaaatctta attttttaat
       61 accaaaatta ttaatcattt cttccttaat acctaaaaaa tcttcactga taataatctt
      121 actaataaac aaaatattta tcctaattgc accttggaaa ataatattgc atccaaactt
      181 acatcaaaaa gttgatataa actaataagc ttgatatcca agtctttatc tttagaattt
      241 aaataaaaac tatcttgtaa ctgctcatca aaaagccaca ataaactatc atctcttgat
      301 ttagcgatta aagatttatt atcagaagca cttcctatat aaaaatatac ataaccatta
      361 ggaaaagaaa tgtcaagcaa gtcattaagt aaagctatat cttctgaact ttgtactttc
      421 ttcttacata aagaatttaa cgacacaaaa gggagcatgg gacgagtggc ttttgaattt
      481 atatttttta aaaaatactc ttcataccaa gatctttgtt catcacacat taatacaaaa
      541 gtgcgtcctt ctaaaagata tttaagtctt gcagccatca aaggagccca ttctaaacga
      601 cgcgactcca accatgccat aaaagctccg ccattgcgaa tattttcaag agtaaaactt
      661 aaaaaatcac tcatttattt atcaagtccg tagcactcat gtagtgctct aactgcaagt
      721 tctccgtatt tttcatgaac tatcattgaa atttttattt cactagtaga aatcataccg
      781 atattaatcc cctcatcagc taaagcttta aaagctttac ttgccactcc tgaatgtgat
      841 ttcataccta cgccgactat agaaactttt actacagcac tatcactttc tatagttgtt
      901 tttgagctta aaattttttg catagcattt ttggctaatt caagttcatt ttgaggaacc
      961 gtaaaaccca aatttgtagc accatcaact ccaacatttt gtataatcat atctacatta
     1021 atattttcat ttgctaaaac agaaaaaatt tcagctgcga ttccaggctt atcttctata
     1081 tttcttaaag tcactcttgc ttgattttta tccaaagcaa taccacttac taaagcttgt
     1141 tccattccat cttcctttgt tatcattgtt ccttcgttat tgttaaaact acttctagtt
     1201 actaaattaa catttaattt ttttgcaagc tctacagagc gattttgcaa aacttttgca
     1261 cctaaacttg caagttcaag catttcttca taagaaattt tatccaattt ctttgccttt
     1321 ggttcaattc ttggatctgt tgtataaacc ccatcaacat cagtataaat ttcacacaaa
     1381 tccgcattta aagcacctgc taccgccaca gcacttaaat cgcttccacc acgccctaag
     1441 gtagttacat taccttcctc atctacacct tgaaaacctg ctataacgac tattttacca
     1501 ttttgaagtt ctgattttat cgcttttgta tcaatatgat gaattcttgc ctttgtaaaa
     1561 acactatctg taataattcc tgcttttctc ccagaaaatg atatagcagg acaacccttt
     1621 tcatttaagg cgatagaaag taaagcgctt gttacacgct ctccgctgct taaaagcata
     1681 tccatatctt taccattagg agttttacta aaatattcag cttgctcaat aagagtattt
     1741 gtcaccccac tcattgcaga tactacaaca acaagttgat taccctgttg cgcactttgg
     1801 ataaccctat tggctactgc ttcgatacgc tcaagtgttc caacgcttgt tccaccatat
     1861 ttttgaacta taagcatttt agatataacc tttcttttca aaatatttga tcactttaac
     1921 ataaatattt tttttgaaat gattaatcat ttcaaaaatt tgtttaacac tcacaaattg
     1981 ataatcatca aattcgggat gcttggtatt aatattgatt gtaacaccgt gttttaaacg
     2041 cactaaaaaa tatttttgaa tctgcccatc ataaggatac atttttttaa caattttact
     2101 cggaaaatca taactcaacc attctggata ctcggcaatg atttcaacct catcagtgcc
     2161 tatttcttct tttagttctc taaataaagc gtttttgaca ctttcacctt tatcaatacc
     2221 tccttgtgga aattgccaaa tattatccat atcacttctt ctagctataa aaatcttaca
     2281 ctcaaaagga taagaacttg ataaaacaat agctgcaaca tttggtctat aatttttctc
     2341 gttttccaca atattgttcc ttaaatctca aggatataat tttaacctaa atcaaatcaa
     2401 atttttatta aaatacatta aaaatttaat aaaatatttt agggttttta tgcattttta
     2461 tatccatatt ccattttgtg aaagcaaatg taattattgc gcttttacaa gtttaaaaaa
     2521 aaatgattat gaaaaagcct attttaaggc tttaaaagaa gatattattt ttcaattaaa
     2581 acaatttaac attcaatcaa atcaaattaa aaccttattc ataggcggag gaacaccaag
     2641 ttgtgttaat gcgtataatt atgaagatat ttttaaaatt ttatatccct tactagataa
     2701 aaatgtagaa atttcatgcg aagctaatcc caactcagca acattaaatt ggcttaaaaa
     2761 tatgaaaaat ctaggagtta atcgcatttc ttttggagtt caaagttttc atcctaaaaa
     2821 acttcacttt cttggaagaa ttcacaatca agaaatgatt atcaaaacat tagaaaacgc
     2881 aaataaagta ggttttaaaa atatcaattt agatcttatt tatgatacga aattagacaa
     2941 taaaaaaatg cttgaatttg aactcttaca cttaaaacaa atcaaggatt taatcacaca
     3001 ccttagtgct tataatttaa ccatagaatc aaacacagcc tttgctaaaa aagaacattt
     3061 caaaaaaaat gctcctaatt taatgaaatt tttcatcaaa caacttctag agcttgactt
     3121 ttttcaatat gaaatcagta atttttcaaa aaccaaagcc caaatttgca aacataatct
     3181 tgcttattgg caaggaaaaa actacctagc ttgtggatta agtgcggtag gattttatga
     3241 aaataaacgt ttttatgcag caaaaaattt aaaaaattac atagaaaatc ccacttttag
     3301 atctatagag caactaagtt ccaaagactt gaatttagag cacctatttt taggacttag
     3361 aagtatagta gggattgatg aaacaaaact caatcaatgg caaaaagaca aaataaatat
     3421 attattaaaa gaaaaaaaac ttttttacaa aaataaaaga tattttaatc ctaattttct
     3481 cattagcgat gaacttactt tatatctctc atcttaaatt taagtttttt aagtaaaata
     3541 tttatttaaa atatcaaatc aaagagtaat gattaatgag ttttggtgaa attatagtta
     3601 ttttagttgt agcgatttta gtcttaggac ctgataaact tccagaagct atagtacaaa
     3661 tagcaaaaat tctaaaggct gtaaaacgca acatagatga tgcaaaatca agcatagaaa
     3721 aagaaatacg catcaatgac ttaaaagaag aagctaagaa atacaaagat gaattttcaa
     3781 gcactaatga aaatatacgc aaaaaactca gctttgaaga atttgatgac cttaagagag
     3841 atattttaga taaaacaaag gtagatttaa cctttgatag cagagatgat aaagtaaaaa
     3901 ataaccttag cggacaaaat ttaaatacag aagaaaaacc aaatcttagc aaattagaaa
     3961 cacaagataa aaacggaaaa ataaatgttt gaagaattaa gacctcattt aatagaactt
     4021 agaaaacgcc tttttataag cgttgcttgc attgtagtta tgtttattgt atgttttgct
     4081 ctacgaagct atatcttaga tattctaaaa gctccactta tagctgtttt accagaagta
     4141 gccaaacatg taaatataat tgaagtacaa gaagccttat ttaccgcaat gaaggttagt
     4201 ttttttgcag cctttatctt ttctctacct gtaatttttt ggcaattttg gaaatttgta
     4261 gctccaggac tttatgataa tgaaaaacgc cttgtggtgc cttttgttag ctttgcgagc
     4321 attatgtttg ccttgggggc ttgtttttgc tattttgttg tagtgccttt ggcttttaaa
     4381 tttttgatta attttggttt aaatgaagat tttaatcctg taattaccat aggaacttat
     4441 gtagattttt ttacaaaagt tgttgtggct tttggcttag cttttgaaat gcctgtaatt
     4501 gcctttttct ttgctaaagt cggacttata gatgatagtt ttttaaaacg ccattttcgc
     4561 atagctgttt tagttatttt tgttttttca gcctttatga ctccacctga tgttttatct
     4621 caatttttaa tggcaggacc actttgcgga ctttatggac tttctatttt aattgttcaa
     4681 aaggtaaatc ctgtcccaaa agataaagaa agtaatgaat aaagacttac ttctttcaag
     4741 ctatgattac actctagcta atgaactcat agccaactat cctacaaatc caaaagaaga
     4801 tgctaggctt ttggtttttg atcgcaaaaa caaagaaatt tttcacacta cttttaaaaa
     4861 tttacacgac tttttaccca actgcgcgat ttttttcaat gataccaaag ttattaaagc
     4921 aagaatttat ggtaataaag caagcggagg aaaaatagaa cttttcttac atcaaccttt
     4981 tttaaattct cacaatccac tttttctagc tcaaattaaa gggcgcgtta aaaaagatga
     5041 aatcttatat tttaaagagg atttaaaagc gcgcgttgta gaacttttaa atgatggtct
     5101 tcgaaaagtt caattttttc aaaatgataa aaccttagac acctcaaatc tttacaacct
     5161 gcttgacaag ataggacata tacccttgcc tccttatatt aaaagagagg atgaaaaaag
     5221 tgatttgaaa gattatcaaa gtatctttgc aaaaaattta ggcgcagtgg ctgctccgac
     5281 tgcaagttta cattttagtg agactatgct tgaaaattta agaaaaaaac acgaaattta
     5341 tcatttaacc ttgcatgtag gagctggaac ctttaaaagc gtggaatgtg aaaatataca
     5401 agagcataaa atgcatagcg aattttttaa tattccgcag caagcatgtg aaattataga
     5461 ttctaaacaa gctattttag gcgtaggaac aacggtaaca agaaccatag aatattatac
     5521 aagaactaaa acaaaaaatg gtttttgtga tcttttttta cacccgcaaa atccacctat
     5581 aagacaaaat catcttttaa ccaattttca tttaccaaaa tctactctta tcatgctagt
     5641 ttcagctttt atcggtagag aacagtgttt aaaactttat gaactcgcca taaaagaaaa
     5701 atatcgcttt tactcttatg gcgatgcgat gctaatcttg tgatttttct ttaaaattta
     5761 ttgctatttt agcttgaagt tttagccaat ctttttgaag catgatagga aaacctccat
     5821 aaacacgccc gccttctaaa tttttactca caccgcctct tgcagctata gtgctaaaat
     5881 cgcctatttt taaatgtcca ctcgttgcac tttgaccacc cataataaca ttgcgtccta
     5941 actcacttga acctgaaatt ccagtttgcg ccacaatgat acaattttga cctatattgc
     6001 aattatgtcc gatttgaact agattatcta ccttagtacc tgctttgata atagtactat
     6061 caaaaactgc tctatctata gttgtacaag cccccacttc tacaaaatct tctaaaacca
     6121 cgttgccatt atgataaatt ttataatgtt cgccgttttt attgtgcgca taaccaaaac
     6181 cgtcacttcc tattacacaa ttagcaagca gatgacattt tttaccgatt ttagtatcat
     6241 tataaatcac tacattagga tgaataatac tctcatcacc aatgctgaca ttatcgccta
     6301 tataagctcc tgccataatg attacatttt caccgatatt tacattatca cctatataaa
     6361 cattaggcat gattcttgcg ctttttgcga tattttgtac tttttcttta gctgtgctta
     6421 tcaaaggttt agcaaaaagc ttgcttaaaa aagcaaaact caaatgtgga ctttgagtaa
     6481 tcaaagcttt agtatcttta ggtactaaat tttcatattc tttagatact aaaatagcag
     6541 cagctcctgt gtgaggtata tctttggtat ttttctcacc atcacaataa gtaagctctg
     6601 taaaatttgc tttcaataaa gaatttaaag cactgatttc tatatcctcg cctttatatt
     6661 ccaagcttaa aaattctgct atttcactta atttcattta atctccatca aaacagatcc
     6721 actgcgaact atatcactag gattgtattt tttaattgtt tttaaaaaat tatcaatgcg
     6781 atttgcatca tcagcaacca ttaaaaacaa aaaattctca ttgctatttg caatagtacc
     6841 attataagct ttcaaaacgg catcaagtcc acctaaattt tcatttaaag gaattttcac
     6901 caaagccatt tctttgtcaa taaattcttc actttctatc actttataag taggaatgag
     6961 cttatgaagt tgtttgacta tctgctcaaa agttctttca tttcctgagg tgactatatt
     7021 aatacgagaa aattctttat tttccaaagg cgctactgta agcgagtcaa tattataacc
     7081 tcttcctgaa aaaagtccta ctatacgaga taaaacccca tgctcattta aaacaattac
     7141 tgataaaacc cttctcattg tctatccttt gcctttggta aaatcatatt ataaatcgca
     7201 cctcctgcag gcaccatagg taaaacatct tcaaagcgat caatttttac atttaaaaga
     7261 gaggttttat cactttttaa agcttggcta aaagcttgaa tgaattcttc tttgcttgaa
     7321 atttcataac cttcacaacc aaaaccttga gcaattttga taaaatcagg ctgagtgctt
     7381 aaatcagttt gtgaaaaatg ctctttataa aacatacttt gccattgtct taccatacct
     7441 aaaaaggcat tatttaaaat aatatttata gtttttatac catactcata agcagtcata
     7501 agctcttgga tattcattaa aaccgatcca tcacctacga aattaatcac cacttcttca
     7561 cccacggcaa gctttgcacc caaagcagca ggtaaagaat atcccatagt tccttgccct
     7621 ccacttgttg caagttgtct tggataatta aaaggataaa actgtgccac ccacatttga
     7681 tgctgaccca catcggtaat aatccttgca tctggagcca ttttcgcaca ttcttcaatc
     7741 acccattgcg gttttaaaat ctcattgcta tcttcataag aaagcggata aagttcatta
     7801 taacgcttta aagtttcgtg ccattcttta aaagttgtgt tgaaattttc ctttttaagc
     7861 tcttctaaaa gctctttaag aacttcttta atatctccta ctataggata atgcgcattg
     7921 ataatctttg aaatagaact aggatcaata tcaacatgaa ctatagtcgc atgtttagca
     7981 aattcacttg tttttcctgt aatcctatca tcaaatctcg ctcctacact cacaagcaaa
     8041 tcacactcac ttaaagccat attagcagca tagcttccat gcatgcctgc cattttaaga
     8101 ttaaaaacat catcacttct taaagttcca agcgccatca aagtttcaac tgctggaatt
     8161 tttgtaaatt ttataagctc tctgatttgc tcgcttgcat tagaactgat gcaacctcca
     8221 cctaagtaaa acaaaggtct ttttgcttct tttaaaagct ctgcaaattt tttaatttgc
     8281 tttgagttac ccttataaac gggcttataa gtcttcatgg aaatttcttt agagtattcc
     8341 caaagtccca aagttgcact tacgtctttt ggcacatcta tatgcacagg cccaggtcta
     8401 ccacttcttg ctatataaaa agcctctttt aaaatgcgtg gaaactcttc tatacaagta
     8461 actaaataat tatgctttac acaaggtctt gaaatgccta ctgcatcaat ttcttgaaaa
     8521 gcatctgtac caataagaga atttgccacc tgccctgaaa tcaacaccaa agggatagaa
     8581 tcgctataag ccgtagctag acctgtaata gtatttgtaa aacctggtcc gcttgtaact
     8641 atagctacac ccacttctcc gctcattctt gcgtaagcat cagcagcatg caaagccgct
     8701 tgttcatgac gcactaaaat atgtttaaaa tacttttgat tgtaaatttc atcataaata
     8761 ttaagcgcag cgcctccagg ataaccaaaa acaattttaa cattttcttc ttttaaagcc
     8821 tcgcaaatca ttgccgaacc gcttaactct ttcataataa cactccaaaa aattattgta
     8881 aaagctcttt aagtgctaaa ttaagtcttt tgccatcaac actcgcacct aattttattt
     8941 tagcttcttt cattaccaaa ccttgttctt ttagtgaact tacgcccaat tcttctataa
     9001 gttgttttaa ggctaaagtt aactcctcat cacttagttg tttaggcaga taaatttcaa
     9061 aaagacttat ttcattttgt tctttttgtg ctaaatcttc acgatttgcc ttaagataaa
     9121 gttcgattgc gtctttgcgt tttttgattt cacttgcaat gattttataa attctttcat
     9181 tatccaactc tattctttca tccacttcta tttgcttaaa agctgcattt agagttctta
     9241 aactatctct tttaaaatca tctttttgtt tcattgcctc tttgatatcg tttaaaattt
     9301 gttcttttaa agtcattttt ttccttttta gttaaaatta caagctttaa gatttaaacc
     9361 aaaaccttct aagcctatat agtctttatc acaactttga gataaaagtt taatttcttc
     9421 tataccaaaa tatcttaaaa tctgtgctcc tataccatag tttttgtatt gagtagtact
     9481 ggatttttct ccttgcatga aaactataac gccaccattt tcactaagaa atttgatttg
     9541 ctctaaaagt tttgaaaatt tatctgaagt taaaagctca aaatcactac cactgatatg
     9601 aaatttaaca ttttcacatt ttttgatatc tttaaagcaa aaagctatgt gttgggtttg
     9661 attatgatca ctaaagataa atttttctgc tttaaagcct gctaaaacac tttgactttt
     9721 ttcttcaagc ttaataaggc tttcatgttt taggcgatat tctataagat cgcttacggc
     9781 tatcatattt aaatcatgtt tttggcaaaa aatttctaga tcttctcttc ttgccatatc
     9841 tccattatct tttacaattt cacaaatcac acaagcacct tttaatcctg ctaatttaca
     9901 aagatcaacc gtgccttctg tatgacctgt gcgttctaaa accccacctt tttttgcgat
     9961 taaaggattg atatgtcctg gtcttacaaa atcactcgct ttagcattat catcggcaaa
    10021 aatttgtata gtcatatttc tttcataggc gctaactccc gttgtagcat cttttgcatc
    10081 tacggttata gtaaaagcag tttcgtggtt tgaagtattt ttaggcacca ttaaaggaag
    10141 ttcaaatttt tttgccaaag tttcatctaa ggctacacaa accacaccac aagcttcttt
    10201 tatcatgaaa tttacttttt cttgagtgct aaattgcgca ggaaagatta aatcgccttc
    10261 attttctcta tcttctgcat ctaccataac aagcattttt cctgcttgta aatccttaat
    10321 cgcttgttct acgctaacaa atttcatttt tatttcctca aaatttttaa aattataact
    10381 taaattgctt gacaaataaa ttaaaattca ttataatcac acttttaaaa aatatttatt
    10441 ggggtatcgc caagcggtaa ggcaacaggt tttggtcctg tcattcaggg gttcgaatcc
    10501 ctttacccca tccacttctt attttatatt tcaaagatct tatatgccgc gaagtagagc
    10561 agtggttagc tcgtcgggct cataacccga aggtcgggag ttcaaatctc cccttcgcaa
    10621 ccagttatgg atttaaaata aattttattt agatagattg tttaaataac tttttaaaat
    10681 attctccagc cgtgttttca gttctatagg agctagaatt tttatatagg ggatccactg
    10741 tttaaccaaa tgtaaaattt catcttcata ggaaacttga gtgcttaaag tatagcttgt
    10801 ttcatcttca tcaatgattt gacaattgct tagtatttct tttctaaaaa aatattcctt
    10861 agcattttta tcaagcttta aaatcacttc tttgctttct ccaagccaga tattaggatc
    10921 attttggatt tgttcctcaa gtttttcatc ggggataaaa ttttcatttt tagtgtgaag
    10981 ttttgaaatt ttatctaaat taaaatgttt taatttatcg ttttcatccc ctaaaagata
    11041 ccaaattccc ttgtaattta cgagtttgta aggtttgatt tggcgttctt tttccttata
    11101 gaaaaaattt aatacattgt gtttgagtat agccacacta agatctttaa aaagctcata
    11161 atccaccttt tgaaaacctt cattttttac catcaaaact ttatttaccc tatggcttaa
    11221 aagatcaact ataaagcctt gatcgagttt tggataaagc tcagcaatgc cacttaaggt
    11281 ggcgaaattc tgtatatctt taaagcttaa tttttccaaa gcaaagcttt ctaaaacata
    11341 tcttccattt tcttttttaa taggcataaa agtaagtctt tcgttaagat ccctttgtat
    11401 ggttcttgta tcgacattaa actcttgtgc aagctcttgg gcgcttagac tttccccatt
    11461 gttaaatttt gataaaatct gcaccaagcg tatgcttaat ttgtcgtatt ctttcatgaa
    11521 atttccttgt gggttaaaat tctttttaac aaacttacgc cttctatgcc taaaatttca
    11581 tttctaagtt ttttgacttc atttaaactt ggggcttttg catgaacggc ttcattacgg
    11641 atttcttgaa tgatagtaag actttttgaa aaaggataat tgataaattg agttaaactt
    11701 tttcctaaat gatattggat attttcatgt ctgagtagaa atttaatact tccaagattg
    11761 ggtttttggg taaaaaaatc tttaagtata aaagatttgc cttggacatt ataagttaaa
    11821 tcataaaggc taagatcttt catacaagct tttaaaagaa cttttttggc aaaagcgtaa
    11881 atttcatatt ctaaggtttt ggagtatttg actacaatgc ttgtaaaatc atttaaaaga
    11941 tcgttttcgc tttgtaaaag ctctaattct gcatgaatga tattgcttat gctatcaggg
    12001 tgcaagagat aaaaaatcct tttgccaaaa acaaagcgta tgaaattttc ttgcatggct
    12061 aggtattctt tgcttttata cacgcttaga taatgctttt catctcctaa aaaataaaaa
    12121 cactcttctt ttaatctcac aggcaaagga taggtgtaat tattgccata aatggcatag
    12181 gtgtgatcgt ttggggtgat gaaattggct aaaaatttat ctcttaaaag actaaaatct
    12241 tccctgacta attctcttaa atcactgatg ataaaaaagt cttccacttc taaatttttt
    12301 tctttataat aactaggaat caaactttca tcgacatttt tagaaatttt taccacctta
    12361 gcgacaaata aattagcata atcgcttaaa aaaagttgca agaaattttc ttcatttgta
    12421 ctttggtaaa tttcttctaa gaaattttgc ttttcttgat cgttgagttt tgatttgatt
    12481 ttgccaaagg caacttggga tttttcttgt aaaatactta aatgttgctt gatgacatct
    12541 tcttgatagt agggattata aaggattaaa aggtggttca tgctttgcct tattttagga
    12601 tttctttaaa aggcttagat ttattatgag cttcaattaa taaaatttta caagtgtcat
    12661 ctagatattt ttctaatttt ttattatcta tttttccatt attatataat atataaattt
    12721 ctttaagaat taaagtgcta aatcttataa cattaattaa attgatttca gaaaggaaaa
    12781 ctaccggatt tgttatagga tttttacttt ttatccatgc accaccagta tcaattaata
    12841 aaaaagtacc agatcctatt aaaagcattt tatttaattc aggtatgtca tcttttggta
    12901 tacattcttt ccattctttt ttgtggtaaa atttagcttt tattatatat ataaaacgaa
    12961 ttagcatttc attaatcata acaggaatag acatagtaac tccatgccta agatcatatc
    13021 cttgttcaaa aacttgggtt gcaatttgtg ctagtgtttg tctatgttgt ccaaaatttc
    13081 caaaatcaca aagtaaaaat aaattataaa aaggcatagg aatgcctgca cctctttcct
    13141 ttcctccact agatccacac caatcagatg ctaaatgtcc aaaccaatta aaaaatccac
    13201 aaaatatttt agcaataaaa tttccccctt gtaattcaaa agtatttgta tctatggtta
    13261 tgatttttcc gttgctaaca aaagttgaag tattggtaaa ttgatttact atagatacaa
    13321 ataacccgaa aatatctgga gagtgaccta tgctttttaa atgatgattt ttcatactta
    13381 aattatctac ttttccattt gttccatttc ttccgtttgt agtagtttga tcataattaa
    13441 ttttaaattt gttttccaaa aacgctatag cacttttagt taaatctttg tttttgtcta
    13501 atgctttttg cttatcccaa ccacataatt gtgcaaattt ttgagtcatt ttttctaccg
    13561 tcttatctac cttttttcct agatagctat ctttaggatt tccaactaaa aaaatgtcca
    13621 taatgccagc tattgctcca catgttattg ctattaaata atcatactta tcgcactctg
    13681 catttctatg ggtaaattca tcttcaattc tttttttaac atctgataaa tttgaataag
    13741 tgatcaaaaa ttttaaagaa tcttcatttg agtttatttt ttttaagttt aaatattttt
    13801 caatttcttg acaatatgtt tcccaattgc tataagtgtt aaaaaaattt tccaatgaa
//
LOCUS       DARGEY010000035        13783 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.035, whole genome shotgun sequence.
ACCESSION   DARGEY010000035 DARGEY010000000
VERSION     DARGEY010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13783)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13783)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13783
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.035"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            11..568
                     /locus_tag="SF008_000873"
     CDS             11..568
                     /locus_tag="SF008_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG8233152.1"
                     /translation="MKIKKILLLVAISCLFVACSNDKEKQQNDVNLSTEASINQSDDM
                     NFKLNLIDGGSISIKKENAVLNFNDEDKATLFVFFTTWCTPCIAEIPHLNKLQEKYNN
                     DFNIVGVLLEDKSNDEIQKFIEQHKISYKVANGENNYLLAKALGGVNGIPTMFLYNKH
                     SKLINQYLGLIPEEMLEIDIQKAIL"
     gene            568..1434
                     /gene="ftsY"
                     /locus_tag="SF008_000874"
     CDS             568..1434
                     /gene="ftsY"
                     /locus_tag="SF008_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEG8233153.1"
                     /translation="MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAS
                     AYLDTLLDPIFE"
     gene            1434..2774
                     /gene="radA"
                     /locus_tag="SF008_000875"
     CDS             1434..2774
                     /gene="radA"
                     /locus_tag="SF008_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEG8233154.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVL
                     KELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIIDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTTKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            2843..3523
                     /locus_tag="SF008_000876"
     CDS             2843..3523
                     /locus_tag="SF008_000876"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEG8233155.1"
                     /translation="MKDLFLFSSLLDASHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHSP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLMFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            3520..3711
                     /locus_tag="SF008_000877"
     CDS             3520..3711
                     /locus_tag="SF008_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233156.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENHKLKNENKLR"
     gene            complement(3733..4581)
                     /gene="metF"
                     /locus_tag="SF008_000878"
     CDS             complement(3733..4581)
                     /gene="metF"
                     /locus_tag="SF008_000878"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HEG8233157.1"
                     /translation="MCSFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEIASLIQEEYQIPSIVHLPCIHSSKEKITQILQKCKEKNLNQILALRGDIC
                     ENLEKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHHLKTKVNAGTD
                     KLITQLFYDNEDFYTFKQNCALAGIDIPIYAGIMPITNKRQVLKISQLCGAKIPPKFV
                     KILEKYENNTLALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KEELHA"
     gene            complement(4591..6855)
                     /gene="metE"
                     /locus_tag="SF008_000879"
     CDS             complement(4591..6855)
                     /gene="metE"
                     /locus_tag="SF008_000879"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEG8233158.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIIALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALVQ
                     KYGFAKDKILFAGLINGKNIYTNDYAKSLKLIKELQKYTQNIILNTSCSLLHVPYSTE
                     FESKLDSNYLKLFSFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRIKPITLAWSKFAQSLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLSLLDTLKAIRF
                     KTEVGPGVYDIHSPRVPSVEELSLTIEKILNKLPKEQIWINPDCGLKTRAYEEVIASL
                     KNLVTATQKIREQL"
     gene            complement(6867..7637)
                     /locus_tag="SF008_000880"
     CDS             complement(6867..7637)
                     /locus_tag="SF008_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8233159.1"
                     /translation="MTLFTKAFCVATLFTGFAWADEELKVGSSITPHADILRFIKSAL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKYKEFNPEEGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFVELKDAQLTRSLNDVDYSLINSNFAILAGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSDEVKKFIEEKYQGALIPTF"
     gene            complement(7648..8640)
                     /locus_tag="SF008_000881"
     CDS             complement(7648..8640)
                     /locus_tag="SF008_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
                     /protein_id="HEG8233160.1"
                     /translation="MNLPILDLQAYEKDKSTFLKNLREIASKIGFFYLINTSIDKNLN
                     EKLFKLGKEFFNLSRSSKELISMVHSPQFRGYTSEGFEYTAGSKDYREQLDIGTERDA
                     LNWNLNSPLWQRLEGPNLWPSEIPELKKTFLTWHKQTKKACLKLLKAFAQALDLPSNA
                     FDKLYGKNSYEHCKIIHYPKSSKNTTQGVGSHKDGGLITFVFQEKQSGLEAFIDGKWL
                     SIPPLENSVVVNIGEFLELATNGYLKATIHRVNLSPKERFSIAYFLGVQLDKDIPIFK
                     LNPELAKESKGVDTDPKNPLLRNVASNYFKRMIRSHPDVASIYHSDLIEKFSFA"
     gene            complement(8952..9446)
                     /gene="luxS"
                     /locus_tag="SF008_000882"
     CDS             complement(8952..9446)
                     /gene="luxS"
                     /locus_tag="SF008_000882"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HEG8233161.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKVIKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSVAK
                     AWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
                     LENA"
     gene            9561..10979
                     /gene="gatB"
                     /locus_tag="SF008_000883"
     CDS             9561..10979
                     /gene="gatB"
                     /locus_tag="SF008_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEG8233162.1"
                     /translation="MFEVVIGLEVHTQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHENNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKAHFIDELGIKESDAEVLISSLEMSRFFESLISQNL
                     NPKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKDKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            10976..11872
                     /locus_tag="SF008_000884"
     CDS             10976..11872
                     /locus_tag="SF008_000884"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEG8233163.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLVFALSSQGVRAWLKENFINRGQKILIASKGIEDQSCQFLDEIFLDFVPKEN
                     FCVLSGPSFAAEVMQKLPTALMISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGNFFGAKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILAELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGKSVQEATQNLLKQND"
     gene            11882..13060
                     /locus_tag="SF008_000885"
     CDS             11882..13060
                     /locus_tag="SF008_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEG8233164.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIGSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEENFALFLQNVAQR
                     KMQIFSSVRVKDANGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQIAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALREALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSVCEFISLCYTFLIKEGFLNWQELCQFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKMHIIKGKNILEK
                     "
     gene            complement(13068..>13783)
                     /locus_tag="SF008_000886"
     CDS             complement(13068..>13783)
                     /locus_tag="SF008_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEG8233165.1"
                     /translation="DIYSTLKTHMPIIACIAAAIISAMFLFKGLNNVSTLDILQNFWI
                     IGIIGTISYVVTFAIVKIVKKTELNKTTDRIFSWFQIFTASSFAFSHGANDIANAIGP
                     FAAILDVLKNGTINATSPVPFAALAMFGVALVVGLWFLGKEVITTVGSKLATIRPTTG
                     FSAELGASIVILLATQFGIPVSSTHILIGAILGIGVYNKNANWIMMKPIGLAWIITLP
                     AAGIMAALVFLGFKLSLGI"
BASE COUNT         4559 a         1952 c         2432 g         4840 t
ORIGIN      
        1 ttgataaata atgaagatta aaaaaatact tttactagtg gcaatatctt gtttgtttgt
       61 tgcttgtagc aatgataaag aaaagcagca aaatgatgta aatttaagca ccgaggcaag
      121 tataaatcaa agtgatgata tgaattttaa acttaatttg attgatggag gatcaatttc
      181 aattaaaaaa gaaaatgccg ttttaaattt caacgatgaa gataaggcaa ctttgtttgt
      241 attttttacc acttggtgta ccccttgcat tgctgaaatc cctcatctta ataaattaca
      301 agaaaagtat aataatgatt ttaatatagt tggggtttta ttagaagata aatctaacga
      361 tgagattcaa aaatttatag aacagcataa aatatcttat aaagtcgcta atggtgaaaa
      421 taactatctt ttagctaaag ctttaggtgg ggtaaatgga attcctacca tgtttcttta
      481 caacaagcat tctaaattga ttaatcagta tttagggctt attcctgaag aaatgctaga
      541 aattgatata caaaaggcta tactttaatg tttaattttt ttaaaaaagg acttgcaaaa
      601 actcttgaaa atattgttgg gattaaagga gagaataaaa agataaccaa agatttgctt
      661 gaagaaattt tgcttgaagc agatgtaagt tatgaaatag ttgaagagat aatttattat
      721 ttaccacctc aaaatgaagt aaaaaaagaa gatttaaagc gtgttatggg ttcttatttt
      781 ctttatgaaa aaaaagaaac caatcaagaa aaaccttttg tagagcttat tttaggagta
      841 aatggagcag gaaaaacaac aagtattgcc aaacttgctt atttatataa aaaccaaaat
      901 caaaaagtga ttttaggagc gtgtgatact tttagagcag gtgcgattga acaattaaaa
      961 ctttgggcgc aaaaagtgga tgtagatata gttttaactg cacaagggca tgatccttca
     1021 gcggttgctt ttgataccat ttctaaagca aaagcaaagg attttgatag agttattatc
     1081 gatacagcag ggcgtttgca aaatcaaaaa aatttagccc atgagcttga aaaaattgtg
     1141 agaatttcaa acaaagcttt agaaggtgca ccccatagaa aaattttagt tttagatgga
     1201 acacagggaa atgctggaat tttacaagct aaagctttta atgagcttgt aaaacttgat
     1261 ggtgtgatta tcacaaagct tgatgggaca gctaaagggg gtgcactttt tagtatagca
     1321 agagagcttg agcttcctat tttttatgta ggcgtgggtg agcaaatgac ggatttgcaa
     1381 gaatttaatg caagtgctta tttagatact ttattagatc ctatttttga ataatggcaa
     1441 aaaataaagc actttttgaa tgtcaagctt gtggaaatca acaaagcaaa tggcttggaa
     1501 aatgtcctga ttgtggagct tgggatagtt ttgtagaatt aaaagctgag caaattaaag
     1561 ttttaaaaga gcttgcgcaa gttagtatga aaacaagtga agctgtttgt attgaagatg
     1621 tggaattaga acattttaca agatacagca cagatgataa tgagcttgat ttggttttag
     1681 gcggagggct tgttgaaggt tctttagtgc ttataggcgg aagtccaggt gtgggaaaat
     1741 ctacgctttt gttaaaaatt gcttcaaatt tagccaaaca gggtaaaaaa gtgctttatg
     1801 tcagtggcga agaaagtaaa gctcagatta aattaagagc tgatcgcctt gaggctaata
     1861 ctccgaattt atttttactt actgaacttt gccttgaaaa tattttagaa gaattacaca
     1921 aaaaggatta tagtattctt atcattgatt ctatacaaac tctatattca aataaagtca
     1981 cttcagcagc aggaagcatc actcaggtgc gtgagattac ttttgaactt atgcgtgtta
     2041 gcaaggctta taatatcagt acttttatca tagggcacat tactaaagaa ggtgctatag
     2101 caggacctag ggttcttgaa catatggtgg atgtggtgct ttattttgaa ggagatgcca
     2161 ctaaagaaat tagactttta agaggcttta aaaatcgttt tggtggaacg aatgaagtag
     2221 gtatttttga gatgactact aagggtttga tcagtgcaaa agatttggca aatcgttttt
     2281 ttactcgtgg aaaggctatt tcaggaagtg ctttaggtgt tgtgatggaa ggatctcgtg
     2341 ctttggtttt agaagttcaa gctttagtgt gtgaaagttc ttatccaaaa cgcagcgcta
     2401 cagggtatga aaaaaatcgc ttagatatgc ttttggcttt gcttgaaaga aaacttgaaa
     2461 ttcctttagg gcattatgat gtatttgtaa atattagcgg cggagtaaaa gtaagtgaaa
     2521 ctgctgcgga tttggctgtg gttgcagcta ttatttcaag ttttaaaaat cgccctttga
     2581 gcaaagatag tatttttata ggggagctta gtttaaatgg agaaattaga gaggttttta
     2641 gccttgatac gcgtttaaaa gaagctaaaa tgcaaaaatt taaaaatgcc attgttcctt
     2701 ctaagccttt ggaagatata gggcttaagt gttttgttgc taaagaactt tcacaagttt
     2761 tagaatggat gtaaattttc attaaaatat aagtaagatt ttgctaaaat tccgagttta
     2821 gaataaaatt tttgaggaaa ccatgaaaga tttattttta tttagctctt tgcttgatgc
     2881 aagtcatact ttttcttatt tttttcacat aggtttggta gctttaattg ctgttatagt
     2941 ggctatgatg gctactcgtt ctatgcaact tgttccacgc ggtatgcaaa atttaggcga
     3001 ggctttttta gagggagttt tatctatggg tagagatacc atgggaagtg aaaaaggtgc
     3061 aagaaaatat cttcctttgg ttgcaacttt ggggattata gtgtttttta gtaatattat
     3121 aggcataata cctggttttc actctccaac tgcaagttta aatttgactt tgtccttggc
     3181 tattatagtt tttgtatatt atcattttga gggtattagg gcgcaaggtt ttgtaaagta
     3241 ttttgctcat ttcatgggac ctattaaact tttagctcct ttgatgtttc ctatagagat
     3301 agtctctcat ctttctcgtg tggtttcttt gtccttccgt ttgtttggaa atattaaagg
     3361 tgacgattta tttttgatgg taattttagc tttagttcct tatatagctc cacttcctgc
     3421 ttatgtgctt ttaactttta tggcattttt acaagctttt atttttatga ttttaactta
     3481 tgtatattta gcgggtgcaa ctgttgttga ggaaggtcat tgatctatat tttagaattt
     3541 ttcaaaggtg catctttagc tttaatgctt tttggtgcac ttttcttctt ttttaaatat
     3601 aattcttttt tctatctttg cttgggtatt ataccaggtt tgcttttatc tttaattttt
     3661 gttttactta tagaaaacca taagctaaaa aatgaaaata agttaagata aaagcaaaaa
     3721 atagtttatt ttctaagcat gaagctcttc tttaagcaaa tgctttacag cttcataaat
     3781 tttaatagcc gctttggatt tattcatagt ataaagatga attccatcta caccacttgt
     3841 gattaaatcg acaatttgat cgcaagcata cgcgatacct gcatcttcta aagccaaagt
     3901 attattttca tatttttcta aaattttaac aaatttagga gggattttag ctccgcaaag
     3961 ttgagaaatt tttaaaacct gtcttttgtt agtaataggc ataatacctg cgtaaatagg
     4021 tatgtcaata cctgctaaag cacaattttg tttaaaagta taaaaatctt cattatcgta
     4081 aaaaagttga gtaatgagct tatctgttcc tgcatttacc ttagttttaa gatggtgtat
     4141 atcctcgatg aaatttttag attcattatg tttttcggga tagcatgcgg cataaatttc
     4201 aaagtattct tgttttttta taaaagaaat taaatcacta gcataagaaa aatctttgct
     4261 tttttctaaa ttctcacata tatcgcctct tagggcaaga atttgattaa gatttttttc
     4321 tttgcatttt tgaagtatct gagtgatttt ttctttacta gaatggatgc aaggtaaatg
     4381 tactatgcta ggaatttgat attcttcctg gattaagctt gcaatttcta aagtgttttg
     4441 tgagttaata gagcctccag ctccaaaggt tacgctgata aaattagggc ttaattgccc
     4501 taaatcatct aagatagcat gaagattttt gatattttca tcctttcttg gtggaaaaac
     4561 ttcaaaagaa aaactacaca tgaaaactcc ttataattgt tctcgtattt tttgcgtagc
     4621 cgtaactaaa tttttaagag aggctataac ttcttcatag gctcttgttt taagtccgca
     4681 gtctggattg atccaaattt gctccttggg taatttgttt aaaatttttt ctatagttaa
     4741 acttaattct tctacgcttg gaactctagg gctatgtata tcataaactc ctggtcccac
     4801 ctcagtttta aaacgaatag cttttagggt atctaaaaga cttaagtttg atcttgaagc
     4861 ttcaaaagaa atcacatcag catccatagc gtcaatttct tttaagatat cgctaaattc
     4921 actataacac atatgagtgt gaatttgagt tttagctttt accccactat gcacaagatt
     4981 aaaagcagga atagcccaat ctaaatactc actatgccaa tcacttttcc ttaaaggcag
     5041 tttttcacgc aaagccgctt catcaatttg tatgattttt atacctgcat tttcaagatc
     5101 taatacttca tctcttatag ctaaggcaat ttgctcagtg ctttctttta gactaatgtc
     5161 ttctcttgga aaggaccaat taagtatggt tacaggtcca gttagcatac cttttacgat
     5221 tttttgactt aaactttgtg caaatttaga ccaagctaag gtgataggct ttatgcgcga
     5281 tacatcaccc caaatcacag gaggtttaac gcaccttgtg ccatagcttt gcacccaacc
     5341 attttgagta aataaaaagc cctttagatt ctctccaaaa tactccacca tatcatttct
     5401 ttcaaattct ccatgcacta aaacatcaag tcctatttct tcttgaattt gtatgcattc
     5461 tttgattttt tgttggttaa attcagtgta gttttgagct gaaatttttt cttgcttaaa
     5521 ggcaaggcga ttagatctta catcagcact ttgaggaaac gaacctatgg ttgtggttgg
     5581 taaaagaggg agttttaaaa attctttttg gattaaggcg cgttctttaa aactaggcgt
     5641 tctggtaaaa tcttcttttt ttaaagcctt aagccttgct ttgacttttt catctaaacg
     5701 ctctgggata tttttaaaaa gctcttgatt ggctctaaag agcggatttt cttcgctaga
     5761 atttagaatt tcttttaaat ctttaagttc ttgaagtttt tctttggcaa aggaaaaaag
     5821 tttaagatag tttgaatcta atttgctttc aaattcagtg ctataaggca catgtaaaag
     5881 tgagcaagaa gtgtttaaga tgatattttg tgtatatttt tgaagctctt taataagctt
     5941 taggctttta gcataatcat tagtatagat atttttgcca ttaataagac ctgcaaaaag
     6001 gattttatct ttagcaaagc cgtatttttg aactaaggct aagctttgtt taccttcgat
     6061 aaaatcaaga cccaaagcat caaatttgct ttctaaaagt ttaggataaa tatctcttaa
     6121 gtctccaaaa tagctttgaa gtaaaatttt aagatctttt ttgtgattta aaagttcttg
     6181 gtaaaattct tcaaacaaag cgatatcttc cttgcttaaa tcataaacca aataaggctc
     6241 atcaagttca agccatgtca ctttaagttc atttagttta tcaaaaagct ctatgtaagc
     6301 gtttaaaagc ttttctttgg cgagtttttg agttttttca tctttaaagg caatgagctt
     6361 aaaaagtgtg aaaatgccta ttaaaacagg cttgctttct atgccaagct ctttagcttc
     6421 gagatattct ttaaaaattt tatcccctgt taaagctata atatcagcat tatcgcactc
     6481 aggcaccaaa taatggtaat ttgtattgaa ccattttttc attgctaagg ctgtaacatc
     6541 tccattttct ccttgataac ctcgactttg agcaaagtat tcatctaaag catctaaatt
     6601 taaattttta tactttgtat gaacaatgtt aaaaagcaca gctgcatcta agacattatc
     6661 ataaagtgaa aaatcattac tagggataaa atcaatgcca gctttttgaa tttcttgcca
     6721 gtgtctaatc cttaaatctt tagcactctt taaaagctcc tctttagaac tttggttttt
     6781 aaagtatttt tcaatagcaa attttaattc tctatttgca cctattcttg ggtaagaaat
     6841 gattgaattt ttcatatttg ttctccttaa aatgtaggga ttaaagcacc ctgatatttt
     6901 tcttctataa attttttaac ttcatcgctt tgcaaggcct ttactagggc tttgatttta
     6961 ggaaggtttt cattaccttc tttaacggcg atgatattgc catattcact atatttactt
     7021 tctgtataaa gcccatcttt tacagggttt aaacctgcta aaatagcaaa attgctatta
     7081 ataagagaat aatctacatc atttaaactc cttgtaagtt gagcgtcttt taactctaca
     7141 aatttaagct tcttaggatt tttagtgata tctaaaggag tgatgagctc attatcctta
     7201 acttctataa gtcctttgct tgctacaatg cgtaaagcac ggctttcatt tgtaggatta
     7261 ttgggtatag aaatgctttg tccttcctct gggttaaatt ctttatattt ttttgaatac
     7321 actgccatag gttctatatg gatactggca acttttacaa gatgggtgcc ttgcctttga
     7381 ttgaattctt ttaaataagg ttcatgctga aaataattag catctaactc accattttca
     7441 accattacat tagggattac cccatcatta aattcataaa tttttaaatc ataaccttgt
     7501 ttttgaagtg ctgattttat aaatcttaaa atatctgcat gaggtgttat agaagagcca
     7561 actttaagtt cttcatctgc ccatgcaaaa ccggtaaaaa gagtagcgac gcaaaaagct
     7621 ttagtaaata aagtcatttt ttctccttta tgcaaaacta aatttttcta tcaagtcact
     7681 atgataaata cttgctacat caggatgaga gcgtatcatt cttttaaaat aattacttgc
     7741 aacatttctt aaaagtggat ttttaggatc agtatccaca cctttgcttt ctttggcaag
     7801 ctctggattt aacttaaaaa taggtatatc cttatcaagt tgcactccaa gaaaataagc
     7861 tatgctaaag cgttcttttg ggcttaaatt cacgcggtga atagtagctt ttaaatagcc
     7921 attggtagct agttctaaaa attctcctat attaactaca acgctatttt caagtggggg
     7981 tatactaagc catttaccat ctataaaagc ttcaagtccg ctttgttttt cttgaaaaac
     8041 aaaagtgata agcccgccat ctttatgtga acccacgcct tgagtagtgt tttttgaact
     8101 tttaggataa tgtatgattt tacaatgttc ataagaattt tttccataaa gtttatcaaa
     8161 agcattgcta ggcagatcaa gagcttgagc gaaggctttt aaaagcttta aacaagcttt
     8221 tttggtttgt ttgtgccaag ttaagaaagt ttttttaagt tctggaattt cactaggcca
     8281 aagattagga ccttctagtc tttgccataa gggtgagttt aaattccagt ttaaagcatc
     8341 tctttctgtg cctatatcca gttgttctct ataatcctta gatcctgctg tgtattcaaa
     8401 accttcgcta gtataacctc taaattgagg agaatgtacc atagaaataa gctctttcga
     8461 acttctagaa agattaaaaa attctttgcc aagtttgaat aatttctcgt ttaaattttt
     8521 atctatactg gtattgataa gataaaaaaa acctatttta gaagcaattt ctcttaaatt
     8581 tttaagaaaa gtgcttttat ctttttcata agcttgtaaa tcaagtatag gtaagttcat
     8641 ttttgctcct taaattaaaa ttaaggataa gaagatattt tgaattaaaa ttttattaga
     8701 gaaatttttg taagttaaga ttttaaatga gtattttgaa aaaataaact tttttgactt
     8761 tcttacacat tatatctcct tatccacttt ttggaccttt ggaaacataa tgttaagcca
     8821 aaggacgcac tagatactac acatctcgca catcagtttc attttttctc cttttaaaat
     8881 aataaaattt caaaatcata tataaaaata tattaattaa agcttaattg tttaaaaaat
     8941 aaagattctt tttaagcatt ctcgagtttt aattctttgt tattcattat gctaatacct
     9001 agatttaaaa ccttttgggc aatttgtttg gcttcatcta aagaatgcat tgcgcaagtt
     9061 ccgcattgat agatattaag ttcaggaatt ttgctttgat cgcttacgct taaaacatct
     9121 ttcatagctg ctttccaagc tttagcaaca cttttttcat ctggtgttcc aattaaactc
     9181 atataaaaac ccgtgcgaca acccataggt gaaatatcaa taatttcaac tgaatttgaa
     9241 tttaaatgat ctctcataaa tcctgcaaat aaatgttcta aggtatgagt acctttttcg
     9301 ctcataatgt ctttatttgg tatgcaaaaa cgcaaatcaa acacgctaat atcatcaccc
     9361 ttaggtgttt ttataacttt agctaaacgc acagcaggag ctggcatttt agtatggtca
     9421 actttaaagc tgtctaataa tggcatttta actccttaaa tataaattgt ctaagaatta
     9481 tagcatttaa agttaatatt taaagccttt ctaaaagaaa aaaagataaa ataaaacatt
     9541 taaaaattca aggaaatttt atgtttgaag tagttatagg tcttgaagtt catactcagt
     9601 taaatacaaa aacaaaaatc ttttgctcat gtgcaacttc ttttggagaa gctccaaata
     9661 ccaatgtttg tcccacttgt ttggccttac caggagcttt gcctgtttta aatgaagagg
     9721 ctgtaaaaaa agctatagct tttggaaaag ctgtcaatgc aacaattaat aaaaaaagtg
     9781 tttttaatcg taagaattat ttttatccag atttacctaa agcctatcaa atttcacaat
     9841 ttgatatccc tatagtagaa aagggtgagc tttttatcaa tgtaaagggt gaaaataaac
     9901 gcataggtat tacaagagca cacttagaag aagatgcagg taaaaatatc cacgaaaata
     9961 atttttctaa agtggactta aatcgtgcag gaactccttt gcttgagatt gtcagcgaac
    10021 ctgagcttag aagtagcgat gaggcagtag cttatcttaa aaagcttcat tctatcatac
    10081 gctttttaga catttcagat gcaaatatgc aagaaggaag ttttagatgc gatgcaaatg
    10141 ttagtataag acctaagggt gatacaaaac tttatactag ggtagagatt aaaaatctta
    10201 attcttttcg ttttatccaa aaagctatag aatatgaggt aaaaagacaa agtgaggctt
    10261 gggaagatgg aacttacgaa caagaagtag ttcaagaaac cagacttttt gatacaacaa
    10321 atttagttac aagaagtatg cgtggtaaag aagaagcggc agaatatcgc tattttccag
    10381 atcctgattt attgcctgtt ttattaaaag atgagttttt ggatattaaa atccctgaac
    10441 ttcctgatga gaagaaagca cactttatag acgagcttgg tataaaagaa agtgatgctg
    10501 aggttttaat cagttcttta gaaatgagtc gtttttttga aagtcttatt tctcaaaatt
    10561 taaatcctaa gctttgtgta aattggttaa atactgaact tatgggactt ttaaaaggag
    10621 aattgactat agaaaattct cccgtagatg ctcaaaagct tggagtttta attaaacgta
    10681 tagaagatgg caccatcagt gcaaaagcgg ctaaagatgt cttagctttt gtatttgaaa
    10741 atactagtgt ggaaattgat gaagctatag aaaagctagg acttaagcaa gtaagtgatg
    10801 attcagccat agaagcggtg attgaacaaa ttttaaatgc aaatgccgat aaggttgcag
    10861 agtataaaag tggtaaagac aagctttttg gattttttgt gggtcaaaca atgaaagaag
    10921 gcaaaggagc ttttaatcct gcaaaagtaa atgaaatttt aaaaacaaag cttggttgat
    10981 gcgtatagcg gttattggtg cgggaaaatg gggcagtgct ttacatctag ccttaaaaga
    11041 aaatcacaat tgttttatca gttctttgca tcagcgtgat ttagaagatt ttgttagcat
    11101 aaaagaagct ttagaatgtg aatatcttgt ttttgcttta agttctcaag gggtgcgtgc
    11161 ttggcttaaa gaaaatttca tcaacagggg acaaaaaatt ttaattgctt caaaaggcat
    11221 agaagatcaa agttgtcaat ttttagatga aattttttta gattttgtac caaaagaaaa
    11281 tttttgtgtt ttaagcggtc cttcttttgc tgctgaagta atgcaaaaac ttcctactgc
    11341 tttgatgatt agcgggataa atcaagagct ttgtaaaaaa tttgcaagtt ttttccctga
    11401 ttttattaaa acttatattg ataatgatgt tcgtggtgct gaaatttgtg gtgcttataa
    11461 gaatgtttta gcaattgcaa gtgggattag tgatgggtta aaacttggca ataatgcaag
    11521 agcggcactg atttcaagag ggcttataga aatgcatcgt tttggtaatt tttttggtgc
    11581 taaagaagaa acttttttag ggttaagtgg ggcaggggat ttgtttttaa ctgcaacgag
    11641 tgttttatca agaaattata gagtaggttt aaaactggcg caaaatcaaa aattagatag
    11701 tattttagct gaacttaatg aagtagcaga aggtgtaaaa actgcttatg ctatagaaaa
    11761 attagcaaaa atgaaaggaa tttatacacc tattgtaaat gaagtagtgg caatttttaa
    11821 gggtaaaagt gtgcaagaag caacgcagaa tttattaaag caaaatgatt aaggaaaaat
    11881 catgataatt aaaaatgcaa aaatttatgg agattcttta caagatatag agattaaaga
    11941 aggaaaaatt accaatattg gttctaattt acaaggtgaa gaaattttag atgctaaagg
    12001 tatgacttta cttccatctt ttgtagattt gtgtgtgagt ttaaaaaacg ataaattttc
    12061 tttagctaat ttagaacttt tagaaaatga gtgtctaaaa ggaggaattt ctagtatagt
    12121 tttgcgtgat tgcatggatt ttgatgaaga aaattttgct ttatttttac aaaatgtagc
    12181 tcaaagaaag atgcaaattt tttcaagcgt gcgggttaag gatgcaaacg gtaagcttaa
    12241 aaatttagcc actcttttaa ataaaggtgc ttgtgcttta gagcttgaca gctctttaga
    12301 tgcaaatact ttaaaagtaa gttcacaata tgcttttatg aaagactctc caatttttgt
    12361 gcgttgttat gataaggatt ttgatgataa tggagtgatg aatgattgtg aaatgagttt
    12421 tgagctaggg cttataggca tgagtaaaat cgctgaaact agccagatag ctaaaatgaa
    12481 agaattggct aaattttata aaaataaagt tatttttgat cttttaagtt tgaaagattc
    12541 tttagtatta ttagatgaaa aggatttaaa acttgtaagc attcatcatc ttatcaaaga
    12601 tgatagtgct tgtgaagatt ttaatacggc tgcgaaactt atgccacctt taagaagcaa
    12661 agaagatgtt ttggctttaa gagaggcttt aaaagaagga aagattagct ttttaacttc
    12721 cctgcatagt gcaaaatcaa tttctttaaa agatttagct tttgatgaag cggcttttgg
    12781 aattcatagc gtatgcgaat ttataagtct ttgttatact tttttaatca aagaaggatt
    12841 tttaaattgg caagagcttt gtcaatttac aagtaaaaat cctagtgaat ttttaggttt
    12901 aaatagtgga gttatagaag ttggcaaaga agctaatcta gttctttttg atgagaatga
    12961 agaaattttt gctccaaaaa gttctcttta ttctgaggat aaactttttg gaaagattaa
    13021 gatgcatata attaaaggaa aaaatatttt agaaaaataa gctttactta aattcctaaa
    13081 gatagtttaa atcctaaaaa tacaagtgct gccataatac cagcggctgg taaagtgata
    13141 atccaagcca atcctatagg cttcatcata atccaatttg cgtttttatt atacactcct
    13201 atacccaata tagcacctat gagtatatgg gtggagctaa caggaattcc aaattgtgta
    13261 gctaagagta taactatgct tgcaccaagt tctgcagaaa atccagtagt agggcgtatg
    13321 gttgcaagtt ttgaacccac tgtagtaatc acttctttac ctaaaaacca aagtcctaca
    13381 actagagcaa ctccaaacat agctaaagct gcaaaaggta caggagaagt cgcgttaatt
    13441 gtaccgtttt ttaagacatc taaaatcgct gcaaaaggac ctatagcatt ggctatatca
    13501 ttggctccgt gtgaaaatgc aaaactagag gctgtaaata tttgaaacca tgagaaaatt
    13561 ctatcagtag ttttattaag ttctgttttt ttaacgattt tgactatagc aaatgttaca
    13621 acataactta tagttcctat aattccgata atccaaaagt tttgtaaaat atccaaagtg
    13681 ctaacattat ttaaaccttt aaataaaaac attgccgaaa tgatagcagc agcaatacaa
    13741 gcaatgattg gcatatgagt ttttaaagta gagtaaatat cta
//
LOCUS       DARGEY010000036        13609 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.036, whole genome shotgun sequence.
ACCESSION   DARGEY010000036 DARGEY010000000
VERSION     DARGEY010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13609)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13609)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13609
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.036"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..227
                     /locus_tag="SF008_000887"
     CDS             <1..227
                     /locus_tag="SF008_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEG8233166.1"
                     /translation="LSGGEATRVGLIRALVLNPKLLILDEITSALDIKTSKEILTFLY
                     DYQQKNNISYIFITHQSDLFYKFNHKKLKL"
     gene            340..729
                     /locus_tag="SF008_000888"
     CDS             340..729
                     /locus_tag="SF008_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HEG8233167.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIIALIFILLDIEVVFLFPWALIFKDLGWFGLLE
                     VFIFIVLLGVGFLYAYKKGAFAWQSIK"
     gene            711..1214
                     /locus_tag="SF008_000889"
     CDS             711..1214
                     /locus_tag="SF008_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HEG8233168.1"
                     /translation="MAEHQVNYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLV"
     gene            1211..2005
                     /locus_tag="SF008_000890"
     CDS             1211..2005
                     /locus_tag="SF008_000890"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEG8233169.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHTVKSDVNESVFKEDFEVL
                     KTQVEILNSFVELDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFVADKNGFEVF
                     YQLLNLEKRLRVRIKTFVGVKERLQSVAHIFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKTYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFADDKDTLNF
                     ARLYHEVPKGGQKKEISFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            2007..3233
                     /gene="nuoD"
                     /locus_tag="SF008_000891"
     CDS             2007..3233
                     /gene="nuoD"
                     /locus_tag="SF008_000891"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HEG8233170.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCAMLYKDTPPEILATHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            3230..3457
                     /locus_tag="SF008_000892"
     CDS             3230..3457
                     /locus_tag="SF008_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HEG8233171.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCELLNSLKFNQVDWTIVIKKERV"
     gene            3454..4146
                     /locus_tag="SF008_000893"
     CDS             3454..4146
                     /locus_tag="SF008_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233172.1"
                     /translation="MIYDNALCFLDMPSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGQFCDLDEGYLSAESCFGEEEAGEVLAFLKETKYLIID
                     KNIHSYKDSENIKYFLNFLSVKYGLKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSKQFLQIAKCKDQSEVEILAKDFSLKTKLCLDENLQGTIAFLNYENNG
                     FDFTPIRIKEAK"
     gene            4143..6605
                     /locus_tag="SF008_000894"
     CDS             4143..6605
                     /locus_tag="SF008_000894"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HEG8233173.1"
                     /translation="MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKYWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPTNGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFKELVELFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDITKSDFLVVAGMLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPMEDMGIAKYSKNFISHIHKNGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKNNIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLVIGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDNNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKEFISPNFENLSLKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGANHE"
     gene            6598..7596
                     /gene="nuoH"
                     /locus_tag="SF008_000895"
     CDS             6598..7596
                     /gene="nuoH"
                     /locus_tag="SF008_000895"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HEG8233174.1"
                     /translation="MSDFAFFALETLIKCIIIIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFISLAAIPMLP
                     EFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVAII
                     SYESVGALALIAIIMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYTSMIAGAILVTLLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALTVLL"
     gene            7606..8247
                     /gene="nuoI"
                     /locus_tag="SF008_000896"
     CDS             7606..8247
                     /gene="nuoI"
                     /locus_tag="SF008_000896"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HEG8233175.1"
                     /translation="MKNYYLVDEKRKTPVSTWEKISQALRRSVKLELFVGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVGNYSINLGRCIYCGFCAEVCPELAIVHGIEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDANLWVKKTPNYYDVMQERALENQNTQEQGENK"
     gene            8244..8762
                     /locus_tag="SF008_000897"
     CDS             8244..8762
                     /locus_tag="SF008_000897"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEG8233176.1"
                     /translation="MIENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAIL
                     LLTMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     TLTHKELTKEKQ"
     gene            8759..9055
                     /gene="nuoK"
                     /locus_tag="SF008_000898"
     CDS             8759..9055
                     /gene="nuoK"
                     /locus_tag="SF008_000898"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEG8233177.1"
                     /translation="MIEKYFFVAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGVALCVLWYRRKGTLELKSLKEVEA"
     gene            9057..10847
                     /gene="nuoL"
                     /locus_tag="SF008_000899"
     CDS             9057..10847
                     /gene="nuoL"
                     /locus_tag="SF008_000899"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEG8233178.1"
                     /translation="MQNLALISLFSPFVAFLFASCFALSEKKQFVGIFCSLLVALSTF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSIVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNDTYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDHNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVVRDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKITAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHDEHPNEASKIALLAMSPLM
                     VLAIIAGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGVILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPRFYHQFIVSKYESLCAILKHCDLYIFDRIVEKIALYSQIIS
                     QKMIMPNSLNLMLRFLVAAFVILLILVWMV"
     gene            10849..12336
                     /locus_tag="SF008_000900"
     CDS             10849..12336
                     /locus_tag="SF008_000900"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEG8233179.1"
                     /translation="MLNYLIFFPLISAFVVLLLNRGGVKVFSVVVSFMILALNLDIFA
                     DFLQGVSFDYNLSFKILKFFSFHVGVDSIALVLMLLSSLMIFLSFLFLKLEQKALVSC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLVALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYANSPILVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLM
                     VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIEGFSLRFREIVALVCIVVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            12326..>13609
                     /locus_tag="SF008_000901"
     CDS             12326..>13609
                     /locus_tag="SF008_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEG8233180.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYASLVILCFSFLYLLMQKE
                     ENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIATRGSDNAISSAIK
                     YFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLVACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTAILNGYWYLALFVALSSVIMLYAYLKILIHVLF"
BASE COUNT         4182 a         1637 c         2657 g         5133 t
ORIGIN      
        1 agttaagtgg aggagaagcc acgcgtgtag gtcttatccg tgctttggtt ttaaatccta
       61 aattgttgat tttagatgaa attacttcag cacttgatat taaaacttct aaagaaattt
      121 taactttttt atatgactat cagcaaaaaa ataatatttc ttatatattt ataacccatc
      181 aaagtgatct tttttataaa tttaatcata aaaaattaaa actttaaaaa atatttttta
      241 atataagttt caatatagaa agtttagagt aaaataaaga aaagtgtaaa tttaattttt
      301 gttgtggagt gattaaagtg ctttaaaaaa ggagaataaa tgtctcatat agatgcttcg
      361 catccttatt ttggtatttt tttaatgcta gtacttgcta gtgttatttt tttcggactg
      421 gtttttttag cttcaaaaat cggtaataat tttgccgcaa aaaatcgcaa aaaattagga
      481 cttggaattt atgaatgtgg tcctattcct gttaaacaag ctaacaagat taactctcaa
      541 tttttcatca tcgccttaat cttcatactt ttggatatag aagttgtgtt tttatttcct
      601 tgggctttga tttttaaaga tttaggttgg tttgggcttt tagaagtttt tatttttatc
      661 gtacttttag gagttggatt tttatatgct tataaaaaag gagcgtttgc atggcagagc
      721 atcaagtaaa ttatgcaagt ggtttgcccg tagttttaac tagtgttgat aaactagttc
      781 aatggggcag gagtaattct ttatgggctt tatcttatgg acttgcctgt tgtgcgattg
      841 agatgatggc ggctgggggt tcaagatatg attttgatag atttggaacg atttttagag
      901 cttcaccacg ccatagtgaa gtgatgatta tcgcaggaac tttatgtaaa aagcatgctg
      961 aatttacaag aagactttac gatcaaatgc ctgatcctaa atgggtgatt tctatgggaa
     1021 gttgtgccaa tacaggcggt atgtttaata cttattctac ggttcaagga gtggatagaa
     1081 ttatacctgt agatatttat gtgccaggct gtgctccacg ccccgaaagt tttcagtttg
     1141 ctttgatgat tttgcaaaaa aagatccgca aagaaaaagc aagtcgtaaa atcgcaccta
     1201 aaaggttggt ataatgagaa agtatagcga taaaaaaaat gctcaaactc aaaattatta
     1261 caaagataga ttttatcacg cgccacacac tgtaaaatct gatgttaatg aaagtgtttt
     1321 taaagaggat tttgaagttt taaaaactca agtagaaatt ttaaattcct ttgtagagct
     1381 tgatttttgg gtaatagaaa ttaaaaaaga agacaatgtt aaaaccttgc aaatgcttaa
     1441 aactttaggg tatttaagtt ttacagaggc aagtgctatt gattttgtag cagataaaaa
     1501 tggttttgaa gtgttttatc agcttttaaa tttagaaaaa agattaagag tgagaataaa
     1561 aacttttgta ggcgtaaaag agcgtttgca aagcgtggct catattttta aaggagcaaa
     1621 ttggagtgag agagaaattt atgatatgtt tggaattttc atcataaatc atcccaattt
     1681 aaaacgcatt ttaatgcctg atgattggtt tggacatccg cttttgaaaa cttatccttt
     1741 aaagggcgat gagtttgcaa gatggtatga gattgataaa atttttggca aagaataccg
     1801 cgaagtagtg ggcgaagaac aaagagattc tggttttgct gatgataaag atacgctaaa
     1861 ttttgcaaga ctttatcatg aagtgccaaa aggtggtcaa aagaaggaaa tttcctttaa
     1921 acaagaatat caagaagatg aaggcgtggc ttttgtaaaa aaagtaaaac gtgatgaagc
     1981 aaaaatttta gagaaaaggc gttaaaatgc aaattcctag caagttaaaa ccttattatg
     2041 aaaatatagc ttttgagcaa gaagactcaa aaatgattat caacttaggc cctcaacacc
     2101 cttcagcaca cggaaattta cgccttattt tagaacttga tggagagcaa gttgtaaaag
     2161 cgcgtccttg tataggttat atgcatcgtg gtatggaaaa aatggctgaa aatatgattt
     2221 atcaagagtt tattcctact actgatagaa tggattatat cgctgcttca gcgaataatt
     2281 atgcttattg tgcagcggtt gaaaagcttt gtggtttaga gattccacgc cgtgccgcag
     2341 tgatacgcat gatactttta gaattaaacc gtatcacatc acatttgctt tggcttgcca
     2401 ctcatgcgct tgatattggt gcgatgagtg tgtttttata ctgctttaga gaacgtgagt
     2461 atgttttgga tttgatagaa aagtattgtg gtgcaaggct tacgcattct tctatgagaa
     2521 taggtggggt tatgcttgat ttacctgaga attatttaga agaaatgctt gcattttgcg
     2581 ataaatttcc aaatgattta aaagattatg aagatctttt agatgataat agaatttggc
     2641 gtttaagaac tgaaaatgta ggtgtagtta ctaaagaaca agctttaaac tggggttgta
     2701 cgggtgtgat gctaagagga agtggcataa aatacgatat acgcaaagaa gagccttatt
     2761 tgctttataa tgaagtcgaa tttggcgtgc cttatgctac gcaaggggat tcttatgcaa
     2821 gatataaagt ttatatgcaa gaatttcgtg aaagtttgaa aatccttaga caatgtgcca
     2881 tgctttataa agatactcca cctgaaattt tagctacgca tcctgagtat gtaagtgctt
     2941 caaaggaaca aattttaacg cagaattatt ctttaatgca gcattttgtt ttaatcactc
     3001 aaggtttaaa accccctaaa ggcgaagttt atgtgcctac tgaaagtcca aaaggtgagc
     3061 ttggcttttt tatccatagt gatggtacag gaagacctta tcgtttaaag gctagaacgc
     3121 ctagttattg gcattgtgcg ttttttgaag aaatgcttgt aggtacttat ttagctgatg
     3181 ttgtagccat tatgggtaat gtaaatatag ttttaggtga gatagatcga tgagaagggt
     3241 agatttaaga aaaagcaaag agctttttga agatttagca caaatcataa aagaagcaaa
     3301 acaaggtgag gttttagtgg tgctttttga aatcggcgat ttttctcctg ttgaaaaaag
     3361 tttttctttt gtaaaagaac aaggctgtga gcttttaaat tctttgaaat ttaatcaagt
     3421 cgattggact attgttataa aaaaggagag agtatgattt atgataatgc tctttgtttt
     3481 ttagatatgc caagccttaa aaacaaaaat ttatgtgaaa aaataggtgt aaatagtatt
     3541 aatatttctt gtttggaaga taaaaactta aaagctaaat tttacaaatg cgaaattgca
     3601 agtttgagtt ttgttttggc cttgctttgt aaattaagcg atgaaggaca attttgcgat
     3661 ttagatgagg gatatttaag tgctgaatct tgttttggag aggaagaagc aggcgaagtg
     3721 cttgcttttt taaaagagac taagtattta attatagata aaaatatcca ttcttataaa
     3781 gatagtgaaa atatcaaata ttttttgaat ttcctaagtg taaaatatgg attaaagatt
     3841 ttagatagcg atgaagaaga atgcgatttt aaaaaggcaa aattaaacac cctaaaagaa
     3901 ctcgataatt atgacgggtt agtgcttttt agagcaaatt tgcaagataa aaatttacat
     3961 tgttcaaagc aatttttaca aattgcaaaa tgcaaagatc aaagtgaagt tgaaattttg
     4021 gctaaagatt ttagtcttaa aaccaagctt tgtttagatg aaaatttaca aggcactata
     4081 gcttttttaa attatgaaaa caatggtttt gattttactc caattcgcat aaaggaagca
     4141 aaatgacagt taagattaat ggtatagatt gcgcctttga agaaggcgaa tatattttaa
     4201 atatagcaag aagaaatgat atttttatcc cagcgatttg ctatctttcg ggctgtagtc
     4261 ctactttggc ttgtcgtatg tgtatggttg aagctgatgg taaaaaggta tattcttgca
     4321 atactaaagc aaaagagggc atggttgtag aaagtgattt acaaaatctt tgggatgaaa
     4381 gaaatgagat catgcaagct tattgtatca atcatccttt agaatgtgga gtttgtgata
     4441 aatcaggcga gtgtgaattg caaaatttca ctcataaaag tcgtgtaaat gttcaaaaat
     4501 attggattaa agacacgcat aaaccgcata aacattgggg aatgattaat tacgatcccg
     4561 cactttgcat agtatgtgag cgttgtatta cagtttgtaa ggataaaatc ggagaaagtg
     4621 ctttaaagac tgttcctcgt ggcggagata gtgtggataa tagctttaaa gagagcatgg
     4681 gaaaagatgc ttatgcgatt tggactaaat ttcaaaaaag tttgataggc cctacaaatg
     4741 gcgacacgct tgattgttca ttttgtggag aatgtacaag cgtatgccca acaggagctt
     4801 taataggttc gaaatttcaa tacacttcaa atatttggga acttaaaaga atccctgctt
     4861 caaatccaca ttcaagcgat tgcgagttga tgtattatga tattaagcaa agcggcatta
     4921 gcaatcaaaa agaaaaaatt tatcgtgtga gtaatgattt tgcctttgcg agtttaaata
     4981 aggctgcaag atttgctttt gatacgcaaa atgaggcgga taaagatgaa aaagccttta
     5041 aagaacttgt ggagcttttt gagaaaaatg aaattaaaaa cattaaattt aatagtttta
     5101 ttaccaatga agaagctttg attttacaaa atttaaaaaa gaaatttaat ctttctttaa
     5161 tcaatgaaga agctttgaaa tttaaagaat ttttacaaga atttatcgct aattctggtg
     5221 agttttatag cgctaatact caagatataa caaaaagtga ttttttggtt gtggctggaa
     5281 tgcttttaag atatgatgct ccaacgctta gttataaaat caataatgct ttagtgatga
     5341 ataaaggctc agggctttat tttcatccta tggaagatat gggtatagca aaatattcta
     5401 aaaattttat ctcgcacatt cataaaaatg gcgatgaaga gcaaatttta tattttttac
     5461 ttcaaaaatt tagccaagat gaaggtatca aaactcattt agcagagttt tttgttagtg
     5521 aaaataaaga aatagaagaa agtatcaacg aagaagttgt agaacaagtc atagaaaaag
     5581 atgaagaagg caatgaaatt caaaaagaag taaaaaaagt cgtgcctaag aaagtgaaaa
     5641 acaacataga agtacaacgc tctgtttttg ctaaaaattt aggcatagat gaagataaat
     5701 tagaagattt attgcttaaa aaagcaaatt ttactcttgt tatagggagt gatttttatt
     5761 ttcataaaaa tgcgaaaaaa cttgctaaat tacttgcttt gatccaaaat accactcctt
     5821 ttaaagtctt tttaaatcct acgcatacta ataccttagg tgtggctatg atttgcgatt
     5881 tggataacaa tacacaagaa ggcaagactt taggctacaa tgaaaaaggt gattttagtt
     5941 tttcttatga agagcatgca aatttagcta gtgcgagttt aaatcagcaa gaaggaactt
     6001 ttttaaatta tgataaaaga gtggtaccaa ctaacgctgc tttagaattt aagggatatt
     6061 ttttaaatga tttggctaat gctttaggtt ttgatgagga atatactata aattatacta
     6121 agagactccc tataaataaa ggtttttctc cgattgattt tgatcattta gacaattttt
     6181 ataccaatgc aggcgattgt aaaaggggat atgagcttaa tttagaatgt ttcaaacaag
     6241 ttgctaaaaa agaattcatc tctccaaatt ttgaaaattt aagcctaaaa gaagatgaaa
     6301 ttttgcttta tagtgctaat cctagctatc aatttggtag attttcaaat cgtgctagtg
     6361 cgattaatga ggtgattttt ttaggtgtaa gtgaaaattt agctaaagag aaaaatttaa
     6421 aagataaaga tcttgtaaaa cttaaaataa aagataaaga attaagcctt agtgtgcgtg
     6481 tggataagga tataaaaaat ggagctttct tgccgtattt tgatgaaaaa cttgacacgc
     6541 taagcttttt tgatgaaaga tttgttgtgg cgaatttaga aaaattagga gcaaaccatg
     6601 agtgattttg ctttttttgc tttagagact ttgattaaat gtattattat cattgcaata
     6661 tttgcgagtt tagcaggtct tgcaacttat gctgaaagaa aggttttagc ttattttcaa
     6721 agacgcatag ggcctgatat ggtagggcct tttgggctta ttcaacttgt agctgatatg
     6781 ataaagcttt ttactaaaga agatataatc ccttcaaatt cgcaaaaatt tatttttgct
     6841 atagcacctt tgatttctgc tatttgtgct tttatttctt tagcagctat tcctatgcta
     6901 cctgaattta ctttatttgg aagggttatt cagcctatag tggcagatat caatgtagct
     6961 ttgctttttg tcatcggtac ttcaggactt tgcttttatg cggtgttttt gggtggactt
     7021 gcaagtaata ataaatggtc gattttaggg gctgcaagag ggcttgtagc gattatttcc
     7081 tatgaaagcg taggagcttt agctttgatt gctattataa tgcttgtagg ttctttttct
     7141 ttggtggata ttaacaatta tcaaagcgat ggattttttt cttggcttat ttttaaacaa
     7201 cctttggctt ttgtgctttt tataattgct ttatttatag agactaatag aactccgctt
     7261 tgtttgacgg aaaatgatgc tgaaattgta gcgggttatg gaacggagta ttcgggttta
     7321 agatggggta tgtttttcat aggtgaatat acttctatga tagctggagc tattttggtc
     7381 actcttttgt ttttaggggg ttttaatagc ttttggatta ttcctggttg gattatgatg
     7441 atagtaaaat caagttttat tttcttttgg tatttttggg caagagctgc ttttccgcaa
     7501 ttgcgtccag atcaagtgat gaaaatgtgc tatttgatct taatcccttt agctgtttta
     7561 aaccttttaa tcactgcttt gacagttctt ttataggagt ttgatatgaa aaattattat
     7621 ttagtagatg agaaaagaaa aactcctgtt agcacttggg agaaaatttc acaagctttg
     7681 cgtagaagcg ttaaactaga gctttttgta gggctttttg tgatgatgag agaattactt
     7741 aagagaaata atagcgctac gattaaatat ccttttgaaa aggtaaagct tgacaatcgt
     7801 taccgtgctg ttcatcgttt gatgcgtttt atagaaagcg aaaatgaaag atgtataggt
     7861 tgtgggcttt gcgaaaaaat ttgcattagc aattgtatta gaatggaaac ttctttagat
     7921 gaaaatgggc gtaaaaaagt aggaaattat agtattaatt tagggcgttg tatttattgt
     7981 ggtttttgtg ctgaggtttg tcctgaactt gctatagtac atggaataga gtatgaaaat
     8041 gcagccgagc aaaggtctta ttttggctat aagcaagatt ttttaactcc tattgataag
     8101 cttaaaaatc aagttgaatt tgaaggagca ggaagtctta gaaaggatgc aaatttgtgg
     8161 gttaaaaaaa caccaaatta ttatgatgtg atgcaagaaa gagccttaga aaatcaaaac
     8221 acacaagagc aaggagaaaa taaatgatag aaaatttggc ttttgtattt tttagtgtag
     8281 tggttttagg cttttttggc attgcggttt taagtaaaaa tatgctttat tctctttctg
     8341 ctttagcggg tggaatggtg tttttatcgg gattttattt tttgcttgat gcagagtttt
     8401 taggcgtgat acaaattatt gtttatagtg gagctgtact tggactttat agttttgcga
     8461 tgatgttttt tgatgcttct aaagaattta aagaacaact taaagctaaa aaaagttttt
     8521 ttactttggt ggttttaagt gcgattttac ttttgactat gcttataggt tttaaatacc
     8581 aaaatatcag cacggatttg cctttaaatg atcctgcttt gtttgatttt aataaacaac
     8641 tggctttagc gattttttca aaatatcttt tagcttttga gtttatagct attttgcttt
     8701 tgatcgcttt agtttgtgct atcactctta ctcataaaga gcttacaaag gaaaaacaat
     8761 gatagaaaag tattttttcg ttgctatttt aatgtttgtc atagggcttg tagggatttt
     8821 aaaaagacaa aatctcatta tgctttttat ttcgagtgaa attttattaa atagtgctaa
     8881 tttagcctta gtagcggctt ctaaaatgca caatgattta aatggacagg tttttgcact
     8941 ttttatcatg ggtgtagcgg cttgtgaagt agctgttggt gtagctttgt gcgtgctttg
     9001 gtatagaaga aaaggcactt tggaattaaa aagcttaaaa gaagtggagg cttagtatgc
     9061 aaaatttggc tttgatttct ctttttagtc cttttgtagc ttttttgttt gcaagttgtt
     9121 ttgctttgag tgagaaaaaa caattcgtag ggatattttg ttcacttcta gtagctttga
     9181 gtactttttg ttctttgtat ttgctttttt gcaatgaagc ttttaatgtg agtttgtttg
     9241 aatggtttgc tggagtaaat tttggttttg atatagatgc tatttcgctt actatgatga
     9301 gtattgtagg tattgtagcc acttgtgtgc atttttatag tattttttat atggctcatg
     9361 atgaaggttt taataaattt tttgcttatt tggggctttt tgtcttttct atgctttttt
     9421 tagtcatgag tgataatttt ttaggacttt tcgtaggttg ggaaggcgtt gggctttgct
     9481 cttggttgct cataggtttt tggtataaaa atgatactta ttcttttgcg gctaatgaag
     9541 cttttattat gaatcgtatt gcggatttgg gtatgctttt aggaattttt tggctttatt
     9601 tgcaagcagg aactttaaaa tatgatgaag ttttttccat ggcacaaagc ctagatcaca
     9661 atgctttgat cttaatcgca acttgtttat ttataggggc tatgggaaaa tctgcacaat
     9721 ttccttttca cacttggctt gctgatgcta tggcagggcc aactcctgtt tctgcattaa
     9781 tccatgcagc aaccatggta acagcggggg tttatttggt aattcgtgcg agtacgcttt
     9841 atgatttagt tcctgaagtt tcttatatta ttgccttact cggagctttt gtagcgattt
     9901 ttgcagcctc tatggctttg gtggttaggg atttaaaacg tattattgct tactctacct
     9961 tatcgcaact tggatatatg tttgtggctg caggacttgg ggcttatggt atagctttat
    10021 ttcacttagc tacgcatgct ttttttaaat ctttactttt cttaggcgct ggaaatgtaa
    10081 tgcatgctat gaatgataaa ttagacatta aaaaaatggg tggacttttt aaacctttaa
    10141 aaattacagc tattttaatg tgtataggat ctttagcttt agcaggaatt tatccttttg
    10201 caggattttt ctctaaagat ttgattttgg gatattcttt catttctttt caccatggta
    10261 tttttttagt gcttttaatc gcagcttttt taacagcatt ttatagcttt agacttttaa
    10321 tgttggtatt ttttacccct gcaagacatg atgaacatcc gaatgaagca agtaaaatag
    10381 cactcttggc tatgagtcct ttgatggttt tagctattat tgcaggattt tttgaacata
    10441 gtttttttga atatttaagc acaaaattag tttttattga tgcacaaaat caaattgtaa
    10501 tgatttgtgc gagtgtagca gctattttgg gtgtaatttt ggctattttt gcttataaaa
    10561 attcttggtt taaggaaagt attgaagaaa ataaaattca caaactttta agtaatgatt
    10621 attttattcc tagattttat catcaattta tcgtttcaaa atatgaaagt ttatgtgcga
    10681 ttttaaagca ttgtgatctt tatatttttg atagaatagt tgaaaaaatt gctttgtatt
    10741 ctcaaattat ttcacaaaaa atgattatgc caaacagctt aaacttaatg cttagatttt
    10801 tggtggcagc ttttgtgatt ttgttgattt tggtatggat ggtgtaaaat gctaaattat
    10861 ttgatatttt ttcctttaat ttctgctttt gtggttttgc ttttaaatcg tggaggcgtt
    10921 aaggttttta gcgttgttgt aagttttatg attttggctt taaatttgga tatttttgca
    10981 gattttttac aaggggtaag ctttgattat aatctctctt ttaaaatttt gaaatttttt
    11041 agctttcatg taggagtaga cagtattgca cttgtattga tgcttttaag ttctttgatg
    11101 atatttttaa gctttttatt tttaaagctg gaacaaaaag cacttgtatc ttgtatattc
    11161 tttttagaat ttgctattat gggacttttt agtgcaaaag atggtttgtt gttttatgtt
    11221 ttttgggaat tttctctttt gcctttactt tatattatgg gagtttatgg taaagatttt
    11281 agagcagggg tgaaattttt tatctatgct tttgcgggtt caattttaat gcttgtagca
    11341 ttgatttatc aagcttattt aaattatcag cttttaaata tcttcacttt tgacttggaa
    11401 atttggaaaa ataatgcctc agcagtaaat tttacagagc aacttttact ttttggagca
    11461 ttttttatcg cttttgctat caaagctcct ttatttccac ttcatacttg ggcacctaag
    11521 gtttatgcaa attcgcctat acttgtttct gtaatgcttg tagtttttaa aatggctcct
    11581 tttggatttt tacttttttg tttaccactt tttccagatg cgagtgtgta ttttatgcct
    11641 ttaattgtag ctttatgtat agtaagtatc gtttataatg ctttaattgc ttatagagca
    11701 gaaaatatta aagaattgat tgcttatagt tctatttcac atcttggtgt gatgattttg
    11761 ggaatttttt ctttaaatgc tttgggtatt agtggtgcgg ttttttatat gtttgcacat
    11821 ggtattgtaa cgggagcttt atttttaatg gttgaacttt tataccaaag atatcatact
    11881 tatgatattt ctttttacca ttctttagcc aaaaaagcac ctttattttc aattttcttt
    11941 atgctcattt tacttgcgag tgtttctttg cctttaactg tttcttttgt gggagagttt
    12001 ttaattcttt taggtatagc aaagattaat ttattttacg ctttgttggc aggtttggtg
    12061 attattttag gagcgattta tatgttcgca gtatttagaa aaatattttt catgcaaaaa
    12121 caaagcttta tagagggttt ttctttacgt tttagagaaa tagtagcgct tgtgtgcatt
    12181 gtagtaatga tttttggact agggcttatg ccaaatatac ttttaaagcc gatacaaaaa
    12241 gatgtggata atcttataaa aacaatgaat attagagctg ttgagcaaaa tactttagat
    12301 tttttatcta aaataggaga ggcaaatgtt aaataatttt ttaaatttag aacttttaaa
    12361 tataagctta tcttatccat ttttattttt aattacaact gcaatagttc ttttgctttg
    12421 ctctggtttt tggaaatttc atcgatcgtt ttatatcggt ataagttctt tatctttaat
    12481 tgtaagtgct tttttgattt taaataatgc aaatgctcaa ggcttagaag caaaagcttt
    12541 tttggccact ttaaataatg atattgtttc attttatgct tctttggtaa ttttgtgttt
    12601 ttcattttta tatcttttaa tgcaaaaaga agaaaatcaa ggtgaatttt atgctttatt
    12661 tttatttatg attgcatctt tgcttttgat ggtttcaagc tcaaatttag tacttatttt
    12721 tataggactt gaaagttctt ctttagcgct ttatacttta atagcaacgc gcggaagtga
    12781 taatgctatt tcaagtgcga taaaatactt tagtgtagcg gctgtaggag ctgggttttt
    12841 tgttatggct gtagctttta tttatttaaa aacaggaact ttagatttat ctgctaattt
    12901 agcattaaaa aatgagtttc aaaaagatcc catgcttttg ggtgctggag tgatgatttt
    12961 tgttctttgt gcaatcaagc tttctttggc accttttcat ttttggctta aagatgtgta
    13021 ttatgcagca catacaaatt tggttgcttt tatttcagtt gtgccaaaag ttgccatgtt
    13081 ggttgtggtt attcgtttgt ttgatttttt aaataataca ggttttgaat atatcataat
    13141 agttctagcg attttttcta tgcttatagg tgcttttgcg gctctaagtc aaaacaatat
    13201 caaaaaaatg tttgcttata gttctgtagt gcattcttct ttggttttgg tagcttgcat
    13261 tcctttatta aaagaacaaa attttgatgg aattttgctt gctatttttg gatattggac
    13321 tttatttgct tttgcaaatt atgctgtatt tatgatttta agcaattatg agaataattc
    13381 ttatgagagt ttaaatgggc ttttggttaa aaaaccttta attgcttttt gtttaagcat
    13441 tagtgtgctt tctttagcag gtatcccgcc ttttggagtg ttttggggta aatttatgat
    13501 tttaaataca gcaattttaa atggatattg gtatttggcg ctttttgtgg ctttatcttc
    13561 tgttattatg ctttatgcgt atttaaagat tttaattcat gttttattt
//
LOCUS       DARGEY010000037        13345 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.037, whole genome shotgun sequence.
ACCESSION   DARGEY010000037 DARGEY010000000
VERSION     DARGEY010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13345)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13345)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13345
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.037"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..834)
                     /locus_tag="SF008_000902"
     CDS             complement(<1..834)
                     /locus_tag="SF008_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233181.1"
                     /translation="MTEISSFWYTPKGYKGIGLMEILTIKSWLDHGYKFHLYTYNLED
                     KIFLKFQELFDNFILKDANEIIPFEEYFSDDRGAGVAAFSDFFRFNLLYLRGGVWVDL
                     DMVCLNHYDYDKKEYIFSKEIDNDLSKARITTSLLKFPKQSEFGKLIIDEAKKIVDDN
                     KIIPWGIIGPWFLAKWVKEYDLEKHALDYKDTCQISCGNTRDFIDKKIFDENRLCLHL
                     FSEMWRIYKMNKNHFYKSCIYGFLLQKHNILDLCLKLNYNLSFCDKHYDKFLPFINIK
                     NK"
     gene            complement(888..1697)
                     /locus_tag="SF008_000903"
     CDS             complement(888..1697)
                     /locus_tag="SF008_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8233182.1"
                     /translation="MPQLSIIIPLFNSCDFISRALQSCINQTLKDIEILIIDDKSKDN
                     SLNMVLEFAKKDPRIKIFQNEENLGTFASRNLGVLHSSSDFIMFLDSDDFLTLDACEI
                     TFKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEVFNQKEFLDFLSKQRHFCWSVWAKC
                     FRKDIILKSFEKIKIDERLSYGEDVLFCYVYFMFCEKIAVFKTCIYHYEFNPNGRYEN
                     KNKEILNQNYYDKKKSNELIRKLSLDFENDTFHQKLFEVLKKEEMDLKNRI"
     gene            1756..2706
                     /gene="waaF"
                     /locus_tag="SF008_000904"
     CDS             1756..2706
                     /gene="waaF"
                     /locus_tag="SF008_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HEG8233183.1"
                     /translation="MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTAL
                     FKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKHKEEHQVLKYLYFIENSLHIKAHLKDLKLPFKLKFQSPLVLKNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHISAVYKVKTVAIFGPTKFTQTSPWQNENATLV
                     HLNLACMPCMQKTCPLKHHKCMKDLKPEVIVKAIQNLTNI"
     gene            complement(2692..3456)
                     /locus_tag="SF008_000905"
     CDS             complement(2692..3456)
                     /locus_tag="SF008_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HEG8233184.1"
                     /translation="MKVFIINLERSLDRKEHMKKQIQKLFEKNPSLKNKLEFIFFKAI
                     DAKNKEHLEFKDHFPWWGSWVLGRELSDGEKACFASHYKLWQECVKLDEPIIILEDDV
                     EFSDEFLIMGQEYIDELLKSKYEYIRLCYLFDKRLYFLSEGGYYLSFEKLAGTQGYVL
                     QVSAAMKFLKYAKNWIYAVDDYMDMFYKHNVLNIVKKPLLLKHDCRIESSISQARRLF
                     LKAKFYRKIIREIFRLYRNILKLSYTFYIKKKLDIS"
     gene            complement(3456..4016)
                     /gene="gmhA"
                     /locus_tag="SF008_000906"
     CDS             complement(3456..4016)
                     /gene="gmhA"
                     /locus_tag="SF008_000906"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEG8233185.1"
                     /translation="MINLVEKEWQEHQKIVQESEILKGQIAKIGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNENDVLIGISTSGKSLNVLEAFKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP
                     SDDTARIQEMHILIIHTLCQIIDEGF"
     gene            complement(4013..5398)
                     /gene="rfaE1"
                     /locus_tag="SF008_000907"
     CDS             complement(4013..5398)
                     /gene="rfaE1"
                     /locus_tag="SF008_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HEG8233186.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYANLKSLGADVFALGVVGDDKSGKFLQENLKGEFLIQKGRKTPFKNR
                     IMAHNQQVLRLDEEDISEILLENELIALFDEKIKDFKAVVLSDYAKGILTPKVCKAVI
                     KKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFENLEGENLEKGIKKLKE
                     DFSLRYSIITLSEAGIALFNEGLKIAPAKALEVYDVTGAGDSVIAVLAFCLANEIEIF
                     KACELANEAAAVVVSKIGSVSVSFDEIRSFKSMSFEKKIKNKEELLTLLKQNDKKIVF
                     TNGCFDIVHFGHIKYLEKAKRLGDVLIVGLNSDASVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDEDTPLELISFLKPDILVKGADYKDKLVVGSNLISRVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            complement(5391..6344)
                     /gene="rfaD"
                     /locus_tag="SF008_000908"
     CDS             complement(5391..6344)
                     /gene="rfaD"
                     /locus_tag="SF008_000908"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HEG8233187.1"
                     /translation="MRVAITGGAGFIGSQLALNLQEKHEILIIDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIEDFKPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEEPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKNKTASMVLQFGHQILAGKNPRLFEGSDQIYRDFT
                     YIKDVINANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLPCEYIPNPYVKSY
                     QFHTEAKLDQTWDYQPKFSLEEGIKDYLDEIKRLFEKEVNA"
     gene            complement(6345..6863)
                     /gene="gmhB"
                     /locus_tag="SF008_000909"
     CDS             complement(6345..6863)
                     /gene="gmhB"
                     /locus_tag="SF008_000909"
                     /EC_number="3.1.3.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HEG8233188.1"
                     /translation="MKTKALFLDRDGVINIDKKYVYKIEDFEFCDGIFELCRYFLAKK
                     YLLFIATNQSGIARGYYKESDFFKLCDYMLKEFTKQGIKIDKIYHCPHLEGCECRKPK
                     AGMLLKAKDEFNLDMKNSIFIGDNLSDMQAGLNANIGTLVLVNEEKKEGDFFRQFKNL
                     KEILSFFKEKDI"
     gene            6987..7289
                     /locus_tag="SF008_000910"
     CDS             6987..7289
                     /locus_tag="SF008_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEG8233189.1"
                     /translation="MKKLLVVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            complement(7312..7518)
                     /gene="ccoS"
                     /locus_tag="SF008_000911"
     CDS             complement(7312..7518)
                     /gene="ccoS"
                     /locus_tag="SF008_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HEG8233190.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDAIELERRKKEALDKKRLS"
     gene            complement(7515..9872)
                     /locus_tag="SF008_000912"
     CDS             complement(7515..9872)
                     /locus_tag="SF008_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HEG8233191.1"
                     /translation="MIMKCEHCKLDYKQAQMIEYKGKFFCCKGCESVWEILHESGLDE
                     FYEKLGNQTLSPVNFQNEMKNYDEFITKTKEGFSEIYLMIHGIECAACVWLNEKILTK
                     QEGILELDINHLNHKARIVFDEQSISLVQILRLIESIGYKASAYDASKASKKADLLKR
                     EFYSKLVVAIACVMNIMWIAVAKYAGFFSGMDKDTKDILNFAEFILCSPVLFYTGSHF
                     YKSAFKTLKMHSLNMDVLVISGASLAYVYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTIDGLNDFLQNEVLVFNGKEFAPKEVQKVCLGDRILLKTGDKILIDG
                     ICKSGEMSVDTSSLNGENTPKLIQKEDEIFSACIVLDGSVEYEATKLYKDSKLSQIIQ
                     LLELASSKKAKLESLVNSLLAYFSRTVLLIAFICFAFWFFYKEESFEISLVNAIAVLI
                     IACPCALALATPVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELE
                     LKEVFLDKALDLNELYNFVKLSKHPISQNIVLYLKQKGAKDLNLDFKKHSSIQAKGLS
                     AELNEGLLLGGSSKFLQEKGIVAKEFDNTHFIFAKEGKILAFFEFDSVLREGAKELIA
                     YLKKEKKELMILSGDHQKAVEKIAKKLEIQNYQASCFPEDKMKTIENLSKNYKVLFVG
                     DGVNDALALKYASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQN
                     LAFSLFYNACTIPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            9981..11279
                     /gene="rho"
                     /locus_tag="SF008_000913"
     CDS             9981..11279
                     /gene="rho"
                     /locus_tag="SF008_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEG8233192.1"
                     /translation="MEKEKKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IKKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQ
                     KIWAIRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            11283..12812
                     /locus_tag="SF008_000914"
     CDS             11283..12812
                     /locus_tag="SF008_000914"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEG8233193.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKTTDMLGFLDPEKIKAFYQAILTKDKEKVFAYLEELQDYEAS
                     SVIDEMLFYLKESFFAKSTEFSTLIYERFFRILSKAKNMLCDDDGFTICVMAFMMMEA
                     SHLKEIDAQIQEIKQENTTNITPRITPSPIIPNLEKKIEKNAYEILLDSIYDRDFDLA
                     ECFKQSTKFISFENNTLNISSNAQGQNRDTLNKGFKLIQELFKAKFGENAKINVQKVL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDPQEDLKEALKDCFGEPSIE
                     N"
     gene            complement(12809..13033)
                     /locus_tag="SF008_000915"
     CDS             complement(12809..13033)
                     /locus_tag="SF008_000915"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HEG8233194.1"
                     /translation="MFKARNLDAQSFHNAKIFWDYFFNLCILWFFAFQVVVAEWFGMW
                     MSKVWKGLPDTTRLVTYMFLALIFISLKND"
     gene            complement(13148..13327)
                     /locus_tag="SF008_000916"
     CDS             complement(13148..13327)
                     /locus_tag="SF008_000916"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HEG8233195.1"
                     /translation="MQQKCFCISKMIRFSKIIILLTVVSLAGIVVFGNVTDYNSNFQF
                     VSHVMSMDIKPDLFR"
BASE COUNT         4810 a         2447 c         1624 g         4464 t
ORIGIN      
        1 tttatttttt atattaataa aaggaaggaa tttatcataa tgtttatcgc aaaaactaag
       61 attataattt aatttaagac ataaatcaag gatattgtgc ttttgaagta aaaatccata
      121 aatacacgat ttataaaaat gatttttatt cattttataa attctccaca tttcagaaaa
      181 taaatgcaaa caaagtctgt tttcatcgaa aattttttta tctataaaat ctctagtatt
      241 accacaagaa atttgacaag tatctttata gtctagagca tgtttttcta aatcatattc
      301 tttaacccat ttagctaaaa accaaggacc tataataccc caaggaatta ttttgttatc
      361 atcaacaatc ttttttgctt catctataat taattttcca aattcacttt gttttggaaa
      421 tttaaggagt gaagttgtga ttctagcttt gcttagatca ttatcaattt ccttagaaaa
      481 aatatattct tttttatcat aatcataatg gtttaaacac accatatcaa gatccaccca
      541 tacccccccc ctgagataaa gtagattaaa cctaaaaaaa tctgaaaaag cagctactcc
      601 agctccccta tcatcgctaa aatattcttc aaaaggtatg atttcatttg catctttaag
      661 tataaaatta tcaaacagct cttggaattt taaaaaaatt ttatcttcta aattataagt
      721 atatagatgg aatttatacc catgatcaag ccaagattta atcgtaagaa tttccattaa
      781 acctataccc ttatagcctt taggagtata ccaaaaactt gaaatttcag tcattgttag
      841 ccttttaata ttaaaaatat aaaaacttaa ttatataaaa tctaatctta aattctattt
      901 tttaaatcca tctcttcttt ctttaaaacc tcaaatagct tttgatgaaa ggtatcattt
      961 tcaaagtcta aagaaagctt tcttataagt tcattacttt tctttttatc ataataattt
     1021 tgatttaaaa tttctttatt tttattctca tatcttccat ttggattaaa ttcataatga
     1081 taaatgcaag ttttaaaaac agctattttc tcacaaaaca taaaataaac ataacaaaaa
     1141 agcacatctt cgccataact taaacgctca tctattttaa ttttctcaaa actttttaag
     1201 atgatatctt ttctaaagca cttcgcccaa accgaccagc aaaaatgcct ttgtttactt
     1261 aaaaaatcta aaaattcctt ttgattaaaa acttcatctt gtttaaaacg ataaaattgt
     1321 ttggttttta ctctatgcac aaaggcatca aaacaaagca aatcaaaacc ttttttcatc
     1381 tctttaaatg ttatttcaca agcatcgagt gttaaaaaat catcactatc taaaaacatt
     1441 ataaaatcag aactagaatg caaaaccccc aaatttctac ttgcaaaagt gcctaaattt
     1501 tcttcatttt gaaagatttt tatccttgga tcttttttgg caaattctaa aaccatattt
     1561 aaactattat ctttactttt atcatcgata atcaaaattt caatatcttt taaagtctga
     1621 tttatacaac tttgtaaagc tcttgagata aaatcgcaag aattaaaaag cgggattatg
     1681 atagaaagtt gtggcatatt tttcctaaat tttgttaaaa taataaaaac aattctatca
     1741 aagtttagga aatttatgaa aatttttata caccttccca cttggctagg cgatgcggtg
     1801 atggcttcac ctgctttata cgttataaaa gaacatttta aaaatgccca atttatcctt
     1861 tatggatctt tggtttccac agcacttttt aaagaatttc ctaattctaa aatcatcata
     1921 gaaaataaac aatcccgcta caaacaagcc ctatctttac gcaaagaact tggtaagatc
     1981 gattttagct ttgcttttag atctgcgttt tcttctaaga ttatcttaca tattcttaaa
     2041 acaaaacaaa gatatttttt tgacaaaaac aagcacaaag aagaacatca agttttaaaa
     2101 tacctttatt ttatagaaaa ctcacttcac ataaaagctc accttaaaga cttaaaactt
     2161 ccctttaagc taaaatttca aagccctctt gtcttaaaaa atggcaaaaa aattctagga
     2221 ctcaatcctg gtgcaagctt tggaagtgca aaaagatggg atgcgagtta ttttgctaaa
     2281 gtggctttaa atttcagcca aagtcatgag attttaatct ttggcgcagg aaaagccgaa
     2341 caagaacttt gtaatgaaat ttatcaaatt ttaaaagaac aaaacataaa agtaaaaaat
     2401 ctttgcaata aaactaccat caaaaccctt tgtcaaaata tcgctttttg cgatcttttc
     2461 atcacaaatg acagtggccc tatgcacata agtgcagttt ataaggtaaa aaccgtggct
     2521 atttttggcc ctacaaaatt tactcaaacc tcaccttggc aaaatgaaaa cgcaacatta
     2581 gtgcatttaa atctagcttg tatgccttgt atgcaaaaaa cctgcccttt aaaacaccac
     2641 aaatgcatga aagatttaaa gcctgaagtg attgtaaaag cgattcaaaa tttaactaat
     2701 atctaatttt ttcttaatgt aaaaagtata agatagtttt aaaatatttc tataaagtct
     2761 aaaaatttct ctaataattt ttctgtaaaa tttagctttc aaaaataaac gtctagcttg
     2821 agaaattgaa ctttctattc tacaatcatg ttttaataat aaaggctttt taactatatt
     2881 taacacatta tgtttataaa acatatccat ataatcatct acggcataga tccaattttt
     2941 agcatattta agaaatttca ttgcagcact tacttgcagt acataacctt gagttccagc
     3001 aagcttttca aaacttaaat aatatccacc ctcgctcaaa aaatacaatc ttttatcgaa
     3061 caaataacaa agtcttatat attcatattt gctctttaat agctcatcta tatattcttg
     3121 ccccattatt aaaaattcat cgctaaattc cacatcatct tctaggatga ttataggctc
     3181 atcaagcttc acacattctt gccaaagttt ataatgacta gcaaaacaag ctttttctcc
     3241 atcagaaagc tctctgccca gcacccaaga accccaccaa ggaaaatgat ctttaaattc
     3301 caaatgttct ttatttttag catcaatagc tttaaagaaa ataaattcta atttattttt
     3361 taaactagga tttttttcaa aaagcttttg aatttgtttt ttcatatgct cttttctatc
     3421 taaagaacgc tctaaattta tgataaaaac tttcattaaa aaccctcatc gatgatctga
     3481 caaagcgtgt gtatgattaa aatgtgcatt tcttgaattc tagccgtatc atcgcttggc
     3541 acaacaagat tatgatcaca aagcttattc atcattccac cgccctttcc actaagccct
     3601 aaacaaagca tattaagttc ttttgctttt ttaaaagctt ctaaaacatt gagacttttt
     3661 ccactggttg aaatgccgat taaaacatca ttttcatttc ctaaagcctc cacttgtctt
     3721 gaaaaaacaa actcaaaacc atagtcattt cctatagcac taagcgctga agtatcggtt
     3781 gtaagcgcta tacctgctaa agccttgcgt tcttttttat aacgcccact aagttcagct
     3841 gcaaaatgct gtgcatcagc tgcacttcca ccatttccgc aaattaaaat tttaccacct
     3901 tttttaagac attcacataa aagctcgcct attttagcga tttgtccttt taaaatttca
     3961 ctttcttgaa cgattttttg atgttcttgc cattcttttt ctactaaatt tatcattttt
     4021 tatccttaat cttttctata atcttactcg tactaaatcc ttcttcaaaa tcgattaatt
     4081 caactcttga aatcaaattt gaacctacaa caagcttatc tttataatca gctcctttaa
     4141 ccaaaatatc aggctttaaa aagcttataa gttctaaagg tgtgtcttca tcaaaaatca
     4201 ctacaaaatc tacaaaataa aaagctgcca acatacaagc tctttgaaac tctgaattta
     4261 caggacgact ctcacctttg agtcttttca cactcgcatc tgagttcaaa cctacaatca
     4321 aaacatcgcc caatctttta gctttctcaa gatattttat atgtccaaaa tgcacgatat
     4381 caaaacaacc atttgtaaaa acaatctttt tatcattttg ttttaaaagc gttaaaagct
     4441 cttctttatt tttgatcttt ttctcaaaac tcatactttt aaaacttcta atctcatcaa
     4501 aactcacact cacactacct attttactta ctacaacggc tgcagcttca ttggcaagtt
     4561 cacaagcttt aaaaatttca atttcatttg ccaaacaaaa agccaaaacg gcaatcacac
     4621 tatcgcccgc tcctgttaca tcataaactt ctaaggcttt agcaggtgcg atttttaaac
     4681 cctcattaaa aagcgcaatc cccgcttctg aaagagtgat gatagaataa cgcaaagaaa
     4741 aatcttcttt taatttttta atcccttttt ctaaattttc accctctaaa ttttcaaatt
     4801 tcaaagcttc taaagcttct tttttattag gcgtgagcaa ggttgcaccg ctatatttac
     4861 taaaatcact ccctttagga tcaactaaaa cagggatatt taaagcctta gcctttttta
     4921 tcacagcctt acaaacctta ggcgttaaaa tacccttagc ataatcgctt aaaaccacag
     4981 ctttaaaatc tttaatcttt tcatcaaaca aagcaataag ctcattttca agcaaaatct
     5041 cacttatgtc ttcttcatct agtcttaaaa cctgctgatt gtgcgccata atgcgatttt
     5101 taaaaggggt tttgcgtcct ttttggatca aaaattctcc ttttaaattt tcttgtaaaa
     5161 atttcccact cttatcatca cccacaacac caagcgcaaa aacatcagcc cctaaacttt
     5221 ttaaatttgc ataaacattc gcagccccgc ctaatctttt atcttcctta agagttttag
     5281 ctaccaaaac aggggcttca ggactgatac gcgaacaatc acaccaagtg taattatcca
     5341 ccataaaatc ccctataatt aaaattttag gtttttgctg gcttaaaaac tcaagcattt
     5401 acttcctttt caaaaagtct ttttatctca tctaaataat ctttaatccc ctcttcaaga
     5461 ctaaattttg gctgataatc ccaagtttga tctagttttg cttcagtatg gaattgataa
     5521 gattttacat aaggatttgg gatatattca caaggcaaat cagtctttaa ctctttttgc
     5581 aaaatatcaa ctatatcttg aaaggttctt gctttaccac tgcctacatt ataaaccccg
     5641 cattttgaat caagggcgat taaattggca ttaataacat ctttaatata agtaaaatct
     5701 ctataaattt gatcacttcc ttcaaacaat cgtggatttt ttcctgctaa aatttgatgg
     5761 ccaaattgca aaaccataga agcggttttg tttttataaa attcgccttt tccataaaca
     5821 ttaaaatatc taagtcctac caaatgagct ttatcgtaat attttttcgc taacttatcc
     5881 atcatcaatt ttgaaaaagc ataaggattt tttggctctt catctttacc tacagtttgt
     5941 ggactttttg catcaccata aaccgaagct gaacttgcat aaataagctt tgcattaaga
     6001 tctatgctaa gttctataaa atctttaaaa gtatttaaat tggtttgtaa aaccttagtt
     6061 tgatcaaaaa ctgtagtgtc tgaaattgct gcttgatgaa aaataatctc tggcttaaaa
     6121 tcttcaatct tttttaaaac tttttcatcg ttaatatcac ctgcaaaaag ttctccatca
     6181 aattcaagta aatttttaaa atgtccaaaa ctttgtaaat ttccattttc aaaagtcgca
     6241 ctgctacgca ttttatcaat gattaaaatt tcatgttttt cttgcaaatt taaagccagt
     6301 tgcgaaccta taaatcctgc accacctgtg attgctactc tcatttaaat gtccttttct
     6361 ttaaaaaaac tcaaaatttc ttttaaattt ttaaattgtc taaaaaaatc gccttctttt
     6421 ttttcttcat ttactaaaac caaagtgcca atattagcat ttaaccctgc ttgcatatcg
     6481 cttagattat ctccgataaa aatagaattt ttcatatcta aattaaactc atcttttgct
     6541 tttaaaagca ttcctgcttt aggtttgcga cattcacaac cttctaaatg cggacaatga
     6601 taaattttat caatttttat accttgttta gtaaattctt taagcatata atcacaaagc
     6661 ttaaaaaaat cactttcctt ataatatcct cttgcaatgc ctgattgatt tgtcgctata
     6721 aaaagcaaat attttttagc taaaaaatat ctacaaagtt caaaaattcc atcacaaaat
     6781 tcaaaatctt ctattttata gacatatttt ttatctatat taatcacacc gtctctatct
     6841 aaaaataatg cttttgtttt cataaaaaac attataatat agcttttttg aaaagaaaat
     6901 aaacattatc tttattttct taagattttt ataaaaataa agatatataa tatctggcaa
     6961 tctaattttt actgaggaga aatcaaatga aaaaattatt agtagtttct gctttggcat
     7021 gtcttggtgt ttctgctttt gctgcagatg gtgctacact ttttaaaaaa tgtgcagtat
     7081 gccatggtgc aaatgctgac aaagtttact taaacaaagt tccagcttta aaaactcttt
     7141 cttctgctga aagacttcaa tacatgaaag aatattcaga aggtaaaaga aatgcttatg
     7201 gtcaaggtgc gatcatgaaa cttaacctta aaggtttaac tgaagaagat tttaaagcta
     7261 tcgaagctca tattgaaact ttaaaataat ttctaaaaaa ggctttcctt ttcaagaaag
     7321 ccttttttta tccaaagctt cttttttacg tctttctaat tctatagcat cacgcaaaga
     7381 atcctcatca tcatttaaag tagtaaattt ataatcatca tcaaattgct tatttttaat
     7441 cccccaaagc aaagttgcca aaatgataaa aaacgctaag atagaaactc ctatcatcat
     7501 catgattata ctattcattc tttaatcctt aaagcattta aaacgactat tatactacta
     7561 aaagacatag aaatagcagc aaataaagga tttatcatac ccaaaaaagc caaaggtatg
     7621 gtgcaagcat tataaaacaa agaaaaagca agattttgct tgataatttt aaaggtgttt
     7681 ttagataatt tgatggcttt ttttaaagaa agcaagtcat ttttcaaaag caaaacatca
     7741 ctactttcta tagctagatc acttccttct cttaaagtca ttgaaacact tgcgtatttt
     7801 aaagctagtg catcatttac cccatcacct acaaataaaa ctttgtaatt tttacttaaa
     7861 ttttctatag ttttcatctt atcttcagga aaacaagaag cttgataatt ttgaatttct
     7921 aactttttag cgattttttc cactgctttt tgatgatcgc cactgagtat cattaattct
     7981 ttcttttctt ttttaagata agcgataagc tcttttgcac cttctcttaa aacactatca
     8041 aactcaaaaa aagctaaaat tttaccttcc ttggcaaaaa taaaatgcgt attatcaaat
     8101 tctttagcca caataccctt ttcttgcaaa aatttagaac ttccgcctaa aagcaaccct
     8161 tcatttaact cagcacttaa acctttagct tgaatactcg aatgcttttt aaaatccaaa
     8221 tttaaatcct tagctccttt ttgctttaaa tataacacaa tattttgaga gataggatgt
     8281 ttagaaagtt ttacaaaatt ataaagctcg tttaaatcaa gcgctttatc taaaaaaacc
     8341 tctttaagtt caagctctat tttggttaaa atacccgttt tatcaaatac cacacaatca
     8401 catttgctta aatcttctat cacgctagaa cttttaaata aaatatgctt ttttaaagcc
     8461 ctacctaaag ccacaagatt gctcactggc gttgctaaag ccaaagcaca aggacaagcg
     8521 ataatcaaaa ctgcaatcgc attgactaaa gaaatttcga aactctcttc tttataaaaa
     8581 aaccaaaaag caaaacaaat aaaagcgatc aataaaaccg ttctagaaaa ataagccaaa
     8641 agactattaa ccaaactttc aagttttgct tttttagaac ttgcaagttc taaaagctgg
     8701 ataatttgac tgagttttga atccttgtaa agctttgttg cttcatactc cacacttcca
     8761 tcaagcacta tacaagctga aaaaatttca tcttcttttt gtatgagttt tggggtattt
     8821 tctccattta aagaagaagt atccacactc atttcaccac ttttacaaat cccatcgatt
     8881 aaaattttat ctccagtttt aagcaaaatt ctatccccta aacaaacctt ttgaacttct
     8941 ttaggagcaa attctttacc attgaaaact aaaacttcat tttgtaaaaa atcattaagc
     9001 ccatctatgg tatctaaagc acgctttttg ctaaacatct caagatattt acctataaaa
     9061 acaaagcaaa ttatcatcgc cacagagtca aaatacactt cccctaccct aaaaaacatg
     9121 gcccataaag aataaacata agccaaactc gctccgctaa tcaccaatac atccatattt
     9181 aaactatgca tttttaaagt tttaaaagca cttttataaa aatgagatcc cgtataaaaa
     9241 agcacaggag aacaaaggat aaattcagca aaatttaaaa tatccttagt gtccttatcc
     9301 ataccgctaa aaaatcctgc gtattttgcc actgctatcc acatgatatt catcacacaa
     9361 gctatagcca caacaagctt agaataaaat tcccttttta gtaaatccgc tttttttgaa
     9421 gccttgctcg catcataagc actcgcttta tagcctatgc tttcaataag tcttaaaatt
     9481 tgcaccaaag aaatactttg ctcatcaaaa acaatgcgtg ctttatggtt taaatgatta
     9541 atatcaagtt ctaaaattcc ttcttgtttg gttaaaattt tctcattaag ccacacacaa
     9601 gctgcacatt ctataccgtg tatcatgaga taaatttcac taaatccttc tttggtttta
     9661 gtgataaact catcataatt tttcatttca ttttgaaaat ttacagggct taaagtttga
     9721 tttccaagct tttcataaaa ctcatctaat ccactttcat gcaaaatttc ccaaacgctc
     9781 tcacaacctt tacaacaaaa aaatttaccc ttatactcta tcatttgggc ttgtttataa
     9841 tcaagtttgc aatgttcaca tttcataatc attctttaaa aaaatatttt ttataattat
     9901 aaacaaattt gacaaaaagt gcattttttt attaaaatca cattttacaa aaattattct
     9961 gctaaatctt acgaggactt atggaaaaag aaaaaaaaca acatcaaaga acccacgttc
    10021 cagtggaagg ttataaaatc gaagaattaa aattattaga tttagaaaat ctagttaaaa
    10081 tcgccaatga atgtgaaatc gaaaacccaa gagaatttcg ccgccaagaa cttatttttg
    10141 aaattttaaa agcacaaaca aaaaaaggcg gttttatact ttttacaggg attttagaaa
    10201 tttcttccga aggttatggc tttttaagag gtatggactc taatcttagc gatagtgtta
    10261 atgacgctta tgtttcaaat tcacaaatta aaaaatttgc tctgcgtgta ggcgatatcg
    10321 ttacaggaca agttagagaa ccaaaagatc aagaaaaata ctacgctctt ttaaaaatcg
    10381 aagcgatcaa ttatctgcct ttacaagaag ccaaagaaag acctttgttt gataacttaa
    10441 cccctatttt tccaacagaa aaaatcaaac tcgaatacga tgcaatgaag cttacaggtc
    10501 gtgttttgga tctttttact cctataggaa aaggacaacg cgggcttatc gttgctccac
    10561 cacgcacagg taaaacagag cttatgaaag aacttgctac tgctattgca aaaaaccacc
    10621 cagaaatgca tttaatcgta cttttagtcg atgaaagacc tgaagaagtt accgatatgc
    10681 aaagatgtgt aaaaggcgaa gtttttagtt ctacttttga tttacctgct tataatcatg
    10741 tgcgtgtagc tgaactcgtg atagaaaaag ccaaaagaat ggtggaaaca ggcaaagatg
    10801 ttatcatctt gcttgatagt atcacaagac tggcacgtgc ttataacacc gcaactccaa
    10861 gcagcggaaa agtcctaagc ggcggggtgg atgctaatgc cctacacaaa ccaaaacgct
    10921 tctttggtgc agctagaaat atagaaaatg gaggctcttt aactatagtt gctacagctt
    10981 taattgatac aggttcaaga atggatgatg tgatttttga agaatttaaa ggcacaggaa
    11041 atagcgaaat agttcttgat agaaatatcg ccgatagaag aatttatcct gcgattaata
    11101 tcatcaaatc aggaacaaga aaagaagaat tactccaagg cgtagcaaat cttcaaaaaa
    11161 tttgggcgat ccgttcagcg atttctcaaa tggatgatgt tgaagcgttg aaatttttat
    11221 attctaaaat gcttaaaacc aaagacaatg tagaactttt atctataatg aacgagtaaa
    11281 aaatgcttca agctttagcg attaaataca gaccaaaaac ttttgatgaa cttataggac
    11341 aaaagacagt tagcgtaagt ttaaaatacg ccctaaatca taatcgctta gctcatgctt
    11401 atcttttttc aggacttaga ggaagtggaa aaacttcaag tgctagaatt ttttctcgtg
    11461 ctttagtttg cgaacaagga ccaagtgata ctccatgtgg cacttgcaaa cactgtcttg
    11521 cagcacttga aggcaaacat atagacatta tagaaatgga tgctgcaagc aaccgtgggc
    11581 ttgaagatat acaagcctta atcgaacaaa ccaaatacac cccttctatg gcaagattta
    11641 aaattttcat cattgatgaa gtacatatgc ttaccccaca ggctgcaaat gcacttttaa
    11701 aaaccttaga agaaccccca agttatgtta aatttatact tgcaaccaca gatcctttaa
    11761 aactcccagc taccgtgctt tcaagaacgc aacattttcg ctttaaacaa attccccaga
    11821 gtgaaatttt aaatcatctt aaagaaattt tacttaaaga aaatgttaaa tttgaagaag
    11881 aagctttaaa atttatagca agaagtggca acggatcttt aagagatact ttaaccttgc
    11941 ttgatcaagc cattattttt tgtcaaaatg aaatcagcat tagtaaaact acagatatgc
    12001 taggattttt agatcctgaa aaaatcaaag ccttttatca ggctatttta acaaaagaca
    12061 aagaaaaagt ttttgcatac ttagaagaac tacaagacta tgaagcctca agcgtgatcg
    12121 atgaaatgct tttttattta aaagaaagtt tttttgcaaa aagtacagaa ttttctactt
    12181 taatttatga aagatttttc cgtattttat caaaagctaa aaatatgctt tgcgatgatg
    12241 atggctttac gatttgtgtt atggctttta tgatgatgga agcaagccat ttaaaagaaa
    12301 ttgatgcaca aatccaagaa atcaaacaag aaaatacaac aaatattaca cctaggatca
    12361 caccttctcc tatcatacct aatcttgaga aaaaaataga aaaaaatgct tatgaaatct
    12421 tgcttgatag tatttatgat agggattttg atcttgcaga atgctttaaa caaagcacga
    12481 aatttattag ttttgaaaac aataccttaa atataagctc aaatgcacaa ggacaaaatc
    12541 gcgatacact caataaaggc tttaaactca tacaagaact ttttaaggct aaatttgggg
    12601 aaaatgctaa aattaatgtg caaaaagtac taacaattga tgaaaataag cttcaatcct
    12661 taactcaaga attaccaaac aatgaaaata aaaacataga tattcaaagt tctattaata
    12721 tgcttaaaga aggggccaaa aaatttgacc cacaagaaga tcttaaagag gctcttaaag
    12781 attgttttgg agagcctagt atagaaaatt aatcattttt aagagagatg aaaatcaaag
    12841 ccaaaaacat ataagttacc aatcttgtag tatcaggtaa acctttccaa accttactca
    12901 tccacattcc aaaccattct gcaacaacta cttggaaggc aaaaaaccat aaaatacaca
    12961 agttaaagaa ataatcccaa aaaatcttag cattatgaaa gctttgagca tctaaatttc
    13021 tagctttaaa catatcataa gcaccttttt tagagctgtt aaggcaataa aagtttcaaa
    13081 aagaataatt gctatatagc ctatatgata aatcacggga gaagtaatag ccatataaac
    13141 tacagcatta cctaaataaa tcaggcttta tatccatact catcacatgc gaaacaaatt
    13201 ggaaattaga attgtaatct gtcacatttc caaaaaccac tatacctgct aacgatacaa
    13261 cggtaagcaa aataataatt tttgaaaatc taatcatttt gcttatgcaa aaacattttt
    13321 gttgcattta tactctttta ataat
//
LOCUS       DARGEY010000038        12674 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.038, whole genome shotgun sequence.
ACCESSION   DARGEY010000038 DARGEY010000000
VERSION     DARGEY010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12674)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12674)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12674
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.038"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            21..947
                     /locus_tag="SF008_000917"
     CDS             21..947
                     /locus_tag="SF008_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEG8233196.1"
                     /translation="MAKIGIVGLGYVGAASAYSIVTQGICSELYLYDIKQDLALAHAR
                     DLGDMSAIHFSYTKIFHVPNLENLASCDIIILAFRKESLKELPSRLVELQNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKFLAKD
                     LNINSKDIFACMIGEHGDSQFAALSNASVLGQNLLDFYKQRLGKDLDIQELEKAVISE
                     GYFIYERKGRTEFGIGTSCANLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKDGIEK
                     VFELKFNEKEKIKLENSKQQIKNAIQSVKDKI"
     gene            complement(944..1546)
                     /locus_tag="SF008_000918"
     CDS             complement(944..1546)
                     /locus_tag="SF008_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8233197.1"
                     /translation="MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGELDITLCILSGTLGSALGALINYYICFFWGKNFVLKWGKYFGINEVKFAKFEE
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLINFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(1627..1854)
                     /locus_tag="SF008_000919"
     CDS             complement(1627..1854)
                     /locus_tag="SF008_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233198.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(1865..3295)
                     /locus_tag="SF008_000920"
     CDS             complement(1865..3295)
                     /locus_tag="SF008_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HEG8233199.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAQI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVSGQD
                     YSANNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMGWSGSPLDLDAGRNTRTSGP
                     VLYVDRAYLDYYITPEWIATIGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEEGKVRDWMSDQKDADANLYYAAVEGELPIEGM
                     GDNLIIFNVAHMTDFALPLPGINLPIGPSGALVNVLQDGVYNLGNLTLANIHFENYNA
                     FGTNFNYFVSLGYSNGTNAHTLSAIPAVQSQLEFNEKDGYAVHVGGRYDFTKTLKVGY
                     EFFWGSRYWYTMSRPSINDPLNIRMTRGTAHDFYVIYQLDRYQFLRLSYTNIQNIWGN
                     RGLPFGGAKKDKARADNIMLMYNVKF"
     gene            complement(3459..3941)
                     /locus_tag="SF008_000921"
     CDS             complement(3459..3941)
                     /locus_tag="SF008_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG8233200.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGVGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
     gene            complement(3951..4658)
                     /locus_tag="SF008_000922"
     CDS             complement(3951..4658)
                     /locus_tag="SF008_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEG8233201.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFARKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIETKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNID"
     gene            4767..5108
                     /locus_tag="SF008_000923"
     CDS             4767..5108
                     /locus_tag="SF008_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8233202.1"
                     /translation="MNIAKKELFVAWFFLIAAIVFEVLGTSFLKMENQILGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIILSIVG
                     IIMINIGEVKE"
     gene            5108..5416
                     /locus_tag="SF008_000924"
     CDS             5108..5416
                     /locus_tag="SF008_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8233203.1"
                     /translation="MYIFIIVLSALLDIVANLLLKKSDGFKNKIWGLAAIVNAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(5434..7026)
                     /locus_tag="SF008_000925"
     CDS             complement(5434..7026)
                     /locus_tag="SF008_000925"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEG8233204.1"
                     /translation="MKSIIFNEIKKILECDFALENPKDKNLAHFATPLAFLLAKELKK
                     SPMLIASDLASKFQNHDCFESVEAVNGYLNFRISKTFLNELANQALTNPNDFTKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLL
                     GLSILLSVKESILHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSEENIPSLADWAK
                     DKMLVLIKQNLEQAKIKIDNYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSLK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYDKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSL
                     VALSIKTAFSLMGIEVKNKMEH"
     gene            complement(7038..7277)
                     /locus_tag="SF008_000926"
     CDS             complement(7038..7277)
                     /locus_tag="SF008_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEG8233205.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTNADASIDETKKA"
     gene            complement(7279..7902)
                     /gene="gmk"
                     /locus_tag="SF008_000927"
     CDS             complement(7279..7902)
                     /gene="gmk"
                     /locus_tag="SF008_000927"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEG8233206.1"
                     /translation="MKLQGFVLLISGPSGAGKSTLLKKLFDEFKDELYFSISSTTRKP
                     REGEKNGVHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSLKHTQDALDNGKIVVFD
                     IDVQGFKIARKKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKE
                     LSEYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            complement(7899..9512)
                     /locus_tag="SF008_000928"
     CDS             complement(7899..9512)
                     /locus_tag="SF008_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HEG8233207.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVEDIDAQILQKPFLPTDFLNLLNNKDANKH
                     TSIDLPMLSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDDAQDDNAN
                     KTLETQNLEQETIKEQTQEDTQTDLDLTLEDGESEKEDLSQEHTALDTEPSLDELDDK
                     NDEDLEIKEDDKNEEIEKQELLDDSKTNTLEMQEELSESQDDNANKTLETQNLEQETI
                     KEQTQEDTQTDLDLTLEDGESEKEDLSQEHTALDTEPSLDELDDKNDEDLEDNKELQA
                     NISDFDDLPVVEEQEKEMDFDDLPEDAEFLGQAKDNEESEEVLEEFAPVVEEDVQDEM
                     DDFTSNLSTQDQIKEELAQLDELDYGIDSDNSSKVLEDFKDEPILDDKELGTNEEEVV
                     VPNLNISDFDTLKESDIQEALGEEILEKNEEPIVSDVTKDDNSEEIVNELSQSIAGAI
                     TSSIKDDTLKAALKGMNMNININISFKED"
     gene            complement(9569..10336)
                     /gene="fliR"
                     /locus_tag="SF008_000929"
     CDS             complement(9569..10336)
                     /gene="fliR"
                     /locus_tag="SF008_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HEG8233208.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAF
                     TMGFTMASILDPSSGTSMPITAQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFS"
     gene            complement(10323..10958)
                     /locus_tag="SF008_000930"
     CDS             complement(10323..10958)
                     /locus_tag="SF008_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8233209.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLTLNTKDCIAIQGSSGCGKSTL
                     LHILSSLLIPKKGEVFFKGSNLYQMDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQDLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDSKLASFCDKIYTINVNGIC"
     gene            complement(10971..12044)
                     /locus_tag="SF008_000931"
     CDS             complement(10971..12044)
                     /locus_tag="SF008_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEG8233210.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSAEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIIPGKMNSFIADNSQLDSKLTLMGQFYVLDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(12044..>12674)
                     /gene="rpsB"
                     /locus_tag="SF008_000932"
     CDS             complement(12044..>12674)
                     /gene="rpsB"
                     /locus_tag="SF008_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEG8233211.1"
                     /translation="VRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGM
                     MTNFGTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQP
                     DMIFVIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQE
                     MAEAINEGKALREQDGEALANEEKEITDEEKKEVLDEAISEEDFGEEQE"
BASE COUNT         4094 a         2362 c         1661 g         4557 t
ORIGIN      
        1 aaaataaata aggagaaaaa atggcaaaaa tcggtatagt tggtttaggt tatgtaggag
       61 ctgctagtgc ttatagcata gttactcaag gaatttgttc agaactttac ttatatgata
      121 taaaacaaga tttagctcta gctcatgcaa gagatttggg agatatgtca gccattcatt
      181 tttcttatac aaaaattttt catgtgccaa atttagaaaa tttagcttct tgcgatatta
      241 tcattttagc ttttagaaaa gaaagcttaa aagaattacc tagtcgcttg gtagaacttc
      301 aaaacaatat cctcgaactt aaagacattg tcttaacctt aaaaaatgct aattttaaag
      361 gcaaatacat cgtcgcaaca aatccaaatg acaccataac ttactacact caagtattaa
      421 gccaattacc taaaaatcat gtttttggta gtggaacaaa tttagatagt tcaagactta
      481 agaaattttt agccaaagat ttaaacataa attcaaaaga tatttttgct tgtatgattg
      541 gcgaacatgg agattctcag tttgcagcac tttctaatgc aagcgtttta ggacaaaatt
      601 tattagattt ttacaagcaa agattaggca aagatttaga catacaagaa ctcgaaaaag
      661 ccgtgattag tgagggatat ttcatctatg aacgcaaagg aagaacagaa tttggcatag
      721 gaacttcttg tgcaaattta gccaaagcca tcctagaaga tagaaaaagt ttacatcctg
      781 taagtgtggt ttttgatgat atagcttttt caatgcccgc tatcatagga aaagatggta
      841 tagaaaaggt ttttgaatta aaattcaatg aaaaagaaaa aataaaatta gaaaattcaa
      901 aacaacaaat caaaaacgcc atacaaagcg taaaagataa aatttaagcc tttttaaaag
      961 gctttttgat tttaatataa attaaacttg ctaaaatcac aaaaacaatt ataataatta
     1021 aaatttgagt taaataagtt ttaatcaact cttcattttg tcctatataa taacccaaaa
     1081 atacaagtat agccacccaa atagcgctac caagtgcagt aaaaagtata aaatttataa
     1141 gtttcatttt taccaaacct gcaggcatag aaatatactg acgaatccct ggcaaaagac
     1201 gacaagtaaa ggttgaaaat tccccatgtt tgttaaaaaa ttcttcaaat ttagcaaatt
     1261 tgacttcgtt tataccaaaa tacttacccc attttaatac aaaattttta ccccaaaaaa
     1321 agcaaatata ataattaatc aaagccccta aagcagaacc taaagtccca ctaagtatac
     1381 aaagagtgat atcaagttcg cctttatgtg ccaaatatcc agcaggtatc ataacaactt
     1441 cacttggaaa aggtataaaa caactctcta aggtcattaa gataataata cccaaatacc
     1501 cccaagcgct agccgtctca acaataaaag aaatgatttc ttgcatatta gccttatttg
     1561 aagaaaattt taaaaaattg tagcttaaaa gattaaacag taaaaagcgg ttttataccg
     1621 ctttttttat ttacctgcaa ctgaaacttg atttggattg tccgctgcac gagcgatcat
     1681 acactctttt aaaacagcag catcagctgg atcgctaact tttttattaa tccagcgttc
     1741 aacttgtttc attgtttttg actctggctc tggagcttcg tattttgcca tcaaacttgc
     1801 acaatcagcc aaagcaatga taggtaataa acttgcaaaa agtatttttc tcatcttttg
     1861 ctccttagaa ttttacatta tacattaaca tgatattatc agctcttgct ttatcttttt
     1921 tcgctccacc aaatggtaag ccacgattac cccaaatatt ttggatatta gtataactta
     1981 agcgtaagaa ttgatatcta tcaagttgat aaatcacata aaaatcatgt gctgttcctc
     2041 ttgtcattct tatattaagc ggatcgttga tacttggacg gctcatagta taccagtatc
     2101 tacttcccca gaagaactca taccctactt ttaaagtctt ggtaaaatca tagcgtccac
     2161 ctacatgcac agcatagcca tctttttcat taaattccaa ttgagattgc acagcaggaa
     2221 ttgcacttag agtatgtgca tttgttccgt tagaataccc taaagataca aaataattaa
     2281 aatttgtacc aaaagcattg taattttcaa aatgaatatt tgctaaagtt aaatttccta
     2341 gattgtaaac accatcttgt aaaacattaa ccaaagcacc gcttgggcca attggaagat
     2401 tgattcctgg aagtggtaat gcaaaatcag tcatatgagc cacattgaag ataataagat
     2461 tatcccccat accttctata ggaagctctc cttctactgc agcatagtaa agatttgcat
     2521 cagcatcttt ttgatcgctc atccagtctc ttaccttacc ctcttcatcc cattgataag
     2581 ttttaccata agctgcacgg atggctacct tatgatcttg caaactttca ggtttataag
     2641 tgattactgc tgcatcacct agagcattaa tcgctaaggc tggataagtg gattgtctta
     2701 aagcattgtt tctaagatta cttcctgggc catcggttcc tggctgtctt cctatggttg
     2761 caatccactc aggtgtgata tagtagtcaa gataagctct atctacataa agtacaggcc
     2821 cacttgttct tgtgtttctt cctgcatcta agtcaagtgg acttccactc caacccattt
     2881 gagaccaatt tttagccata gataaacgac catagaattt ggttttatca ttaatatcag
     2941 cattcatatt taaatgaagc tcattcatcc atttgttatt agcactataa tcttgtccgc
     3001 taactttata gtttgtattt gaaactgctg ttgaaaactc aagtccaaat ttaaccttgc
     3061 tcaaagcagc ttggaattct gtttcatcgg ccctatcatt aagatcagca agttcagctt
     3121 ttacagcttc attttgctta gcttgagctt ccctttcttt tctgatttgt gcaagttcag
     3181 cttgaatttg tgcaagctgt ttttgaagct tggttatctc atcatctgta tttttagcaa
     3241 aaagtgaaga tgaaagaaga caagcactta aaataagtga aaacttagtt ttcataatca
     3301 taactccttg taattttgtt acatttagca aattaaaatt gtgattatag aaaaaaaagt
     3361 ttaaaaaaaa attatacatt aatcattttt agctagtcaa acttatgact agctttgtaa
     3421 atattgtagt tttaaaaaag ttttaaaatt ttaaattttt aaattttatc gcaaattttt
     3481 atgtctaaaa ttttatctcc ttggcgtata gagtctaaaa cttctaaact ttcttcatct
     3541 tttggatcaa tttgcccaaa aacagtatga accccatcta aatgagcttg agggctgtga
     3601 caaatgaaaa attgagaacc acccgtatcg cgtcctgcgt gtgccataga taaggttcca
     3661 cgctcatgtt tatgctcttg atcatcacat tcgcaaatga tttcatatcc aggcccacct
     3721 acaccattgc cgtgtggaca acctccttgt atgacaaaat ttgggatcac acgatgaaaa
     3781 tttaaatctt tataaaatcc ctcattagcc aaagtagcaa aattacaaac cgtttgcgga
     3841 gcctcatcgc caaaaagttt taatttcatt gtgccttttt cagtttctat aagagcaaat
     3901 ttgtattcat ttactttgct tgtgtcgatt gtttttatca ttatttctcc ttaatctata
     3961 tttgtataaa cagcttgaac atcatcatca tcttctaact tatctaaaag tttttctata
     4021 tcgctaagct gttcttcgct aaagcttaca ggattgtttg gtatatactc aagtcctgct
     4081 tttttaagaa ctaaaccctt agtctctata gcagaactta gctcaccaaa ggcagtataa
     4141 tcaccactaa ttactaactc ttcttcattt tgttctaatt cttcaagccc tgcatcgatc
     4201 aaatcaagtt ctaattcttc taaatctcct gcaaattttt caagatgaaa aaccgctttt
     4261 ctagcaaaca taaagcctaa agatccattt tgtaaaactt ctccaccatt tttgctaaaa
     4321 atggctttaa cattagccac ggtgcgcgta gggttatcgc tcatacattc aactataacc
     4381 aaagctccat gtgcagcttt tccttcataa tgaatgtttt taatatctgc gctatctttt
     4441 ccactcgcac gcttaatagc cgcatctata ttatcttttg gcatattatt tgcttttgct
     4501 gtggctatag cacttcttaa ttttggattc atatcaggat cagtgccacc ttctttagca
     4561 gctacttgta tggctttagc aagcttagga aaaagcttac tcattttatc ccatctagcc
     4621 tctttagaag ctcttcggta ttcaaacgct cgtcccataa attctcactt tctttaaaga
     4681 tttttaaact taaaagtata aactaaaaag gctaattaaa gctttaaatg gtatgatttt
     4741 accatttatt tttagggaga agctttttga atatcgcaaa aaaagaactt tttgttgctt
     4801 ggtttttctt gattgctgct attgtatttg aagttttagg tactagtttt ttaaaaatgg
     4861 aaaatcaaat tttaggctat atatttatgg ctttatttat agctttttct tattttttta
     4921 tgggcaaggc gattaaaaaa attcaagtag gcatagccta tgctgtatgg gaacttttag
     4981 ggattattct tatactttta gtttctttta tagtttttaa agagagttta accttaactc
     5041 aaattctagg cattattctt tctatcgttg gaattatcat gattaatata ggcgaggtta
     5101 aagaataatg tatattttta ttattgttct atcggcattg ttagatatcg tagcaaattt
     5161 attgctaaaa aaatcagatg gttttaagaa taaaatttgg ggcttagctg cgattgtcaa
     5221 tgctatactt gctttttttc tactttcttt ttctttaaaa tatgttcctt taagcatagc
     5281 ttactcaact tggggtgcta taggcatcat aggaacttgt cttggtggat ggattttata
     5341 taaagaaaaa ttaaacaaaa taggaatttt aggtatcatt atcgtgataa tagcagtatt
     5401 tttgctaaat tattaaaaca gcaaaatgct gttttaatgt tccattttgt tttttacttc
     5461 aatacccatt aaagaaaatg cggttttaat actaagagca accaaagaaa ataatttaag
     5521 caaatcattt tcatttgcag agcctacaac tttattttca ttgtagaatt tatgaaaatt
     5581 tgcagctaaa tttttaagat aatcaggaat tttttgcaaa gctctagcct caaaagcatc
     5641 gtttaaaaca gcctttaaat tcaaagcttc aaaaagcaaa tttacgccat cttgatttaa
     5701 actttgtaaa tcagctttca ttacatcatc gattttttta ccagctttag caaacacttg
     5761 atgaattcta gcgtgtgcat agttgatata atacacagga ttagaactat cttctttttg
     5821 caaatcacta atatcaaatt ccaaatgcgt atcgcatttt ttgctcaaaa agatataacg
     5881 caaagcatca cttcctatct catcaaccac atcgctcatc aagataaaat ttcctgctct
     5941 tttactcatt ttataaggtt ctccatcttt aagtagggaa accatttgtg ctaaaataat
     6001 ctcaagatta ttagagtcaa atcccaaaaa ttccatcgca gctttcattc tagggatata
     6061 accatgatga tctgctcccc aaatattgat acatttatca tagcctctac tcattttatc
     6121 cttatgataa actatatccg ctgctaaata agtcccacgg ccatcttcac ggataataac
     6181 acgatctttt tcatctcctt ttaaagacga agcaagccaa attttacctt cttgctcgta
     6241 aattccttta tgctctttta aagattctaa agttgcattt aaagcatcat aatacgatct
     6301 ttcgcttaca tagttgtcaa ttttaatctt tgcttgttct aaattttgtt taatcaaaac
     6361 aagcatttta tcttttgccc aatcagccaa actagggata ttttcttcgc taaaaaattc
     6421 tttaccaaat ttttcaaaag cttcttttgc taaatccgct atatactcgc ctttgtaata
     6481 ttgctctgga tattcaacat tttcatgaag tatactttct ttcacactta gtaaaataga
     6541 aagccctagt aaataaattt gattacccgc atcattgaca tagtattctg tattaaattt
     6601 atagcccaaa tgtcttgcaa gtcttgttaa ggtgtctcca aaaacagcgc ctcttgcatg
     6661 tcctatgtgt aaaggcccag taggatttgc actcacatat tcaagcaaaa aactttcttg
     6721 ttttttttct cctttagtaa aatcatttgg atttgtcaaa gcctgatttg caagttcatt
     6781 taaaaaagtt ttggaaattc taaaatttaa atacccattt acagcttcaa ctgattcaaa
     6841 acaatcatga ttttgaaatt tgctcgctaa gtcgctagcg atcaacatag gggatttttt
     6901 taattcctta gccagtaaaa aagccaaagg ggtagcaaaa tgtgctaaat ttttatcctt
     6961 tggattttca agcgcaaaat cacactctaa aatcttttta atttcattaa aaataatact
     7021 tttcaaaaga ctaaacctta agcttttttt gtttcgtcta tacttgcatc agcatttgta
     7081 ttattagttg tgtttttgtt ttcttctatt ttttgagtat tttttgctac ttcatcatca
     7141 ttattcattt catctttaaa agttttaata cctttgccta aaccctttgc aagttctgga
     7201 attttttttg ctccaaaaag caatacaaca atcaataaaa taatcaacca atgacttgga
     7261 cttgaccaac cacccatttt attctccttc attccaaata ttttgaattt gccctagatt
     7321 ctgccctttg gttctaaatt tatgggcgat taaaatcgct cgcaatgctt cataactttg
     7381 ctttaactca tcgttaatga taagataatc atactcgcta agctctttca tctcatcact
     7441 agcgttttgt aatctttttt ctagttgtat tattgtatca gtatttcgct taataagtct
     7501 tttttttagc tcatctttat tttttgtagt aataaaaaca gaaacaatct tatcagccat
     7561 tttttttctg gctattttaa atccttgcac atcaatatca aaaacaacta tttttccatt
     7621 atctaaagca tcttgggtgt gctttaaaga agtaccataa aaattttcat gcactctagc
     7681 ccattctaga aaatgatcac tatctatacc cttttgaaat tcttcatgag atataaaatg
     7741 ataatgcact ccattttttt caccctctct tggcttgcga gttgttgaag aaatagaaaa
     7801 ataaagctca tctttaaatt catcaaaaag tttttttaaa agagttgatt ttccagcacc
     7861 actaggacct gaaatcaaca aaacaaaacc ttgcaatttc aatcctcttt aaaactaatg
     7921 tttatattta tattcatatt cataccctta agagcagctt ttaaggtatc atctttaata
     7981 cttgaagtga tcgctcctgc tatgctttgg ctaagctcat taactatctc ttcgctatta
     8041 tcatctttag ttacatcact tactataggc tcttcatttt tttctaagat ttcctctcca
     8101 agagcttctt gtatatcact ttctttcaat gtatcaaaat cacttatatt taaatttggc
     8161 acaaccactt cctcttcatt tgttcctaat tctttatcgt ctaaaattgg ttcatcttta
     8221 aaatcttcta agaccttgct actattgtca ctatcaatac cataatcaag ctcatcaagt
     8281 tgagctagtt cttctttgat ttgatcttga gtactcaaat ttgaagtaaa atcatccatt
     8341 tcatcttgaa catcttcttc cacaacagga gcaaactcct ctaaaacttc ctctgattct
     8401 tcattatctt ttgcttgacc taaaaattca gcatcctcag gaagatcatc aaaatccatt
     8461 tctttttctt gctcttcaac cacaggaaga tcatcaaagt cgcttatatt agcttgtaat
     8521 tctttgttat cttctaaatc ttcatcattt ttatcatcta gctcatctaa actaggctca
     8581 gtatccaaag ctgtatgttc ttggcttaag tcttcttttt cgctttcacc atcttctaaa
     8641 gttaaatcta aatcagtttg agtgtcttct tgagtctgtt ctttaattgt ttcttgttct
     8701 aaattttgag tttctaaagt tttgtttgca ttatcatctt gagattcgct aagctcttct
     8761 tgcatttcta atgtatttgt tttagaatcg tctaataatt cttgcttttc tatttcttca
     8821 tttttatcat cttctttgat ttctaaatct tcatcatttt tatcatctag ctcatctaaa
     8881 ctaggctcag tatccaaagc tgtatgttct tggcttaagt cttctttttc gctttcacca
     8941 tcttctaaag ttaaatctaa atcagtttga gtgtcttctt gagtctgttc tttaattgtt
     9001 tcttgttcta aattttgagt ttctaaagtt ttgtttgcat tatcatcttg agcatcatca
     9061 tcaaaactca aatcttccat tccctctgaa tttatatcta aagaattttc atcaggcaaa
     9121 tcatctaaat ttaaattatc taaatccaag cttatatcag cataaggatt ttcatcattg
     9181 cttaacattg gcaaatcaat agatgtatgc ttgttcgcat ctttattatt aagcaaattt
     9241 aaaaaatctg taggtaaaaa aggtttttgt aaaatttgcg catctatatc ttctacattt
     9301 tgatttcgcg gggctaaaaa aatcaatcta tcgcattttt ctttaagaat ttttaaaggt
     9361 gctggagtat cactatctac aacaatcaca tcataattac ccaaattttc actataagca
     9421 ttaagttctt caaaatcata agacattttt ttagcactaa ggcttacaag tcttgaaact
     9481 acagggtttt catttaaaag taaaattttc atcactttaa tccttaaaaa ataatcgcta
     9541 ttttacgata atttcattta tcctttcctt aggagaaaaa aagagtttgc atatgagtaa
     9601 aaagttctaa aattaaattt ttaaaatatt gcatcataac tagtaaaata gcaatcaaaa
     9661 ctacaaaacc tagagctatc tttataggat agccaataac taaaagatta aattgtggca
     9721 ttgttttcat caaaagtcca aaaataacat cggctaaaag tgaaattcca agtataggaa
     9781 agctcatagt aaaacctatg atgaaaatat taaacatacc catatttaaa taatgcatta
     9841 aattctcatg cggataaaat ccacctaaac taatataacc caaagaatga cttaaaaaca
     9901 aaagcattaa atgatggcca tcaaaagcaa gaaaaaacat caaagcaagt aaattcaaaa
     9961 tttgtgccgt aataggcata ctcgttccag aacttggatc taatatactt gccatagtaa
    10021 atcccatagt aaaagcaatc tgctcacctg ccatcataat aatagcaaaa ataatttgaa
    10081 gcattaatcc tgctatcatt ccaaaaatca cttcactaat aagctgtaaa acaaaaaaac
    10141 tatctaaatg caaagattct aatctagcca aaggatataa atacatagtc aaaaataaaa
    10201 ctatagtact ttttattacc ataggaatag aattatgtga aaaaaaagga aaaaaaacta
    10261 taagaccact cattctagca agaagcaaca taaaagttac aacattttta tcgcctaaat
    10321 aattaacaaa ttccattgac gtttatagta taaattttat cacaaaaact tgcgagctta
    10381 ctatcgtgag ttacaaaaaa taaagccgca tcattttctt taacataaga aattaaaagt
    10441 tcgataacat ttttagcatt atcaaaatcc aaatttccag ttgcttcatc agcaaaaata
    10501 atctttggtt ttttacaaag cacacgtgcg atactcacac gctgttgttg tccgccgcta
    10561 agctttccta ttttttgatg caaaagtgta tcaataccta acctttttaa aattttctca
    10621 tctaaatctt gacccgataa aacactagca agttcgatat tttctaaagc tgaaaaacct
    10681 ttaaaaagat aatgtgtctg aaaaataata ccaaaatcat agcggcgaat ttttaatctt
    10741 tcgttttcat ccatctgata aagattagaa cctttaaaaa aaacttcacc tttttttgga
    10801 attaataaag aagaaagtat atgcaaaaga gtagatttac cacaaccgct actcccttga
    10861 atagcaatgc aatctttagt atttaaagta agatttaaac cctcaaaaag cggataatca
    10921 aaactatggc ttaaattttc cgctcttaag agttccattt ttaaccgttt ttaaagttgt
    10981 gcagcaactt cagccgcaaa atcttcagtt ttcttttcta aaccttcacc aacttcaaag
    11041 caaataaatt ctacaatttt aatttttcca ccaaattctt tttctttttc ggcaattact
    11101 tgttctacag tttttttgtc atccagtaca taaaactgac ccattaaagt aagtttgcta
    11161 tcgagttgag aattatcggc tataaagcta ttcattttac ctggaatgat attatcccaa
    11221 attttttcag gtttaccttg agctttaagt tcttctttga ttttttcttc agcttctttt
    11281 aaaattgcat cgcttaattg tttgcgactt gcaaattgag gaattttatg ttcaggttta
    11341 tttggatctt tcagtctacg tctttcttca ttttcttttt caagttcagc aaccaaggct
    11401 ttgtattcat tttcaacaaa agtcatatcc aaatcttcat aacttaaata acttggtctc
    11461 attgctgcaa tatgcataca aatttgtctt aataaatctc ttgattttga agctacttca
    11521 gcactatcac aagctgcagc gatcacaaca ccaacacggc catttgtatg aatataacca
    11581 tttacaacgc cgttagcacc tgcttttaaa gttgcaaatc ttcttacaac taagttttct
    11641 cctatagttg caatttgact ttttaaatat tcttcaaatt ttacaccatt aatcgtactt
    11701 gagtgaagct cttccacact ttgcaagcta ttgctttgaa tatgagctgt agtatctttt
    11761 gttaaagcga taaactgatc attttttgcc acaaaatctg tttcggaatt aatctcactt
    11821 acagttgcgc ttgtaaaatc atcacttact tttacactta ctaaaccttc tgcagcaagt
    11881 ctatctgctt ttttagcagc cttacctaaa cctttttctc ttaaaagttg tactgcttta
    11941 tcaaaatctc cattagtttc actcaaagca tttttacaat ccatcatccc cgcacctgta
    12001 ctttcgcgga gttcttttac cattgcagca gtaatttcag ccattattct tgctcctcac
    12061 cgaagtcttc ttcgcttatc gcttcatcta aaacttcttt tttctcttca tcggtgattt
    12121 ctttttcttc atttgctaaa gcttcgccat cttgttctct taaagctttt ccttcattaa
    12181 tcgcttcagc catttcttgg cagaaaagtt gcactgaacg aattgcatca tcatttcctg
    12241 gaataggata agttaccaaa tcaggatcgc agtttgtatc tagtggagct acaacaggaa
    12301 ttcttaatct atttgcttct tgaacagcaa ttttctcttt tactgtgtca ataacaaaaa
    12361 tcatatcagg ttgagttttc atataacgaa ttccacctaa ataagctaat aatttttctt
    12421 tttttcttgt aagcattaaa gcttcttttt tagttaaaag tttaatactt ccatcttctt
    12481 ccattttttc aattacttct aattttctaa ttgattggcg aatggtacca aaatttgtca
    12541 tcataccgcc aagccatcta tgatttacat aaggcatacc gcatttttca gcgtattctt
    12601 taatcgctcc acctgcttgt ttttttgtcc cgacaaaaag tatagttttt ccttcggcag
    12661 cagcgtcacg aacg
//
LOCUS       DARGEY010000039        12589 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.039, whole genome shotgun sequence.
ACCESSION   DARGEY010000039 DARGEY010000000
VERSION     DARGEY010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12589)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12589)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12589
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.039"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(43..237)
                     /locus_tag="SF008_000933"
     CDS             complement(43..237)
                     /locus_tag="SF008_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEG8233212.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
     gene            377..1024
                     /gene="rpe"
                     /locus_tag="SF008_000934"
     CDS             377..1024
                     /gene="rpe"
                     /locus_tag="SF008_000934"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEG8233213.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFVDLFISLKPKFISFHMESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLIHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            1021..1782
                     /locus_tag="SF008_000935"
     CDS             1021..1782
                     /locus_tag="SF008_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEG8233214.1"
                     /translation="MSLQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFTLKTRTTKIKDEIFCIVDIESTGGVSKGEILEIGAVKIQNSKEI
                     GRFQSFVKVKEIPKNITELTGITYEMVENAPSLAKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISKALNECGFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENMHHRALDDAL
                     AAAEIFKYCLGKLPYHIKTTEELINFTKTARIKQK"
     regulatory      1803..1907
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            1964..3256
                     /gene="thiC"
                     /locus_tag="SF008_000936"
     CDS             1964..3256
                     /gene="thiC"
                     /locus_tag="SF008_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HEG8233215.1"
                     /translation="MKTQMNYAKEGIFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFDIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQINAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRAAHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGIQVMIEGPGHMAINEIEAN
                     MQLEKRLCKGAPFYVLGPLVIDIGAGYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERARDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGEDVSLA"
     gene            complement(3248..3766)
                     /locus_tag="SF008_000937"
     CDS             complement(3248..3766)
                     /locus_tag="SF008_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233216.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKLKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFDIFLQKYFQNV
                     KIQETKPEKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(3756..4283)
                     /locus_tag="SF008_000938"
     CDS             complement(3756..4283)
                     /locus_tag="SF008_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233217.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSILFILLVYFTYTIKIA
                     LINSSIDNEKQQVIVLQNQTKQNEMLYEILFDQSQIAKNFNTQNQIVKESLRNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
     gene            complement(4280..5239)
                     /locus_tag="SF008_000939"
     CDS             complement(4280..5239)
                     /locus_tag="SF008_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HEG8233218.1"
                     /translation="MLFLLKKIFPQLFISIILEDKKNIVKASIYRGNKLISSNEKTFD
                     KSENLLEYIKNLSKHFLFYHTALFLDAKEQGLIPSTNIQDCEHFNIGKISLQHILFNN
                     ALVYTATEHVEYYSELFEEYRGLDFLYSPFALLYYNIQKEKQPDDQILLYGFKQGHLL
                     AIIVAKGNTILYGDFKIFEQELGLELELPSEDNQEIENNNNDTEVTLDNFNEALNNKF
                     DLLDQENNLETLNNNDNFNLDELNQFSNDMELCRYIITSIEKFYNDDKYAGVFINGIL
                     LYSESDINISAIDFLESETFLEIKTKQINTLDLMIELMQKELK"
     gene            complement(5241..5870)
                     /locus_tag="SF008_000940"
     CDS             complement(5241..5870)
                     /locus_tag="SF008_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEG8233219.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKAGVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWKFKSW
                     DKMILPKPFSKITYSLSEPLDILSLDKEKAKEFLMKQFDKISLADQFKE"
     gene            complement(5854..7155)
                     /gene="miaB"
                     /locus_tag="SF008_000941"
     CDS             complement(5854..7155)
                     /gene="miaB"
                     /locus_tag="SF008_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HEG8233220.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     TKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEELRAGNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            complement(7152..7394)
                     /locus_tag="SF008_000942"
     CDS             complement(7152..7394)
                     /locus_tag="SF008_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233221.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            7521..8609
                     /gene="nusA"
                     /locus_tag="SF008_000943"
     CDS             7521..8609
                     /gene="nusA"
                     /locus_tag="SF008_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HEG8233222.1"
                     /translation="MEKIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEF
                     FVDPKNLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENL
                     GRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRA
                     FLPRKNRIKGEKFKIGDVVKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDG
                     YVNIIGCARIPGERAKIILQANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFT
                     NESEILISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIE
                     LNELSSSQLNNAISNEEAMKNLQDLFKI"
     gene            complement(8625..9812)
                     /locus_tag="SF008_000944"
     CDS             complement(8625..9812)
                     /locus_tag="SF008_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8233223.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLSMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCILILIGISFLVRLSIPDFHHKTQSRFFTMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INDKNLFYMYLGQGLGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     EYHGRVIAYTDMIYLSFSAIISMLMGFLFEIGLSLELITGLLGMIFIFVAFYWKWFYK
                     KYL"
     gene            9887..10933
                     /locus_tag="SF008_000945"
     CDS             9887..10933
                     /locus_tag="SF008_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HEG8233224.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYKRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISITEVLQRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDEEIIDHFE
                     HLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALARLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            10933..12153
                     /locus_tag="SF008_000946"
     CDS             10933..12153
                     /locus_tag="SF008_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEG8233225.1"
                     /translation="MQYLDSRGVKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEEKILQKLKINALGELASKNSDFDYLAKNLLNAQIFKCKEFQSSNDGDEKSIEI
                     LSLKDLQNFYKNFIHLSDLVVILGGDLEEKQAKEDLLKLLSKLQIGKKNTPKKYELSK
                     NIKDEILIRPESEQAYIYFATPFFADFKDKDLYLAKIALFVLGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNMSFSRVFGYLQTKNESAKEAKKIVKELFEDFIKNGMTQNELDQA
                     KNFLIGSTPLRYESLSKRLSMSFNEFYQGLNLGYYKEELKLMEKVKLETINAYIKKHQ
                     ELLNLSFASIQNEN"
     gene            12143..>12589
                     /locus_tag="SF008_000947"
     CDS             12143..>12589
                     /locus_tag="SF008_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEG8233226.1"
                     /translation="MKIKESDFEFFKKLKIKSAIDLALLLPKKIENLNPSKNPKENEI
                     CTQKITIKSVSSRKNQLFGLGFCEEWQENISFVFFHPRAWHFGICKVGKGLIFNAKLS
                     RFNHTWQFNNPKILTSFEGFSPKYQILGLKDAKIAAFIHKYLNYENL"
BASE COUNT         4431 a         1699 c         2085 g         4374 t
ORIGIN      
        1 tttaaattgg aaattttaaa attgaggaat aaatcctcaa aattatttag aattttgttt
       61 ttttagagtt cttagagtag aagctgcaat tctcattttt ctcgtggtgc catcttctaa
      121 agttacacga actgttctga gattaggtaa aaagcgtctt tttgttttat tgttagcatg
      181 gctgacatta ttacccacca ttggaccctt gcctgtgatt tgacatactc ttgccatttt
      241 tttgtcctta tgaaaatttt taaatggaga ttttatcaaa attaagctta aaatattcca
      301 taatttatag tttttttaat atataagtcg ataaaatatt atttatcaca tttatatata
      361 gtttaaggtt ttgatcatgt atgtagctcc aagtttattg tctgcaaatt ttttgaaatt
      421 agaagaagaa gttaaagcta ttgaagctgc aggtgcggat cttttacaca ttgatgtaat
      481 ggatggacac tttgttccaa atttgacttt cggaccttgc gtgatcgaaa agatttcaac
      541 tattagtaag ttgccattag atgtgcattt aatggttaaa gatgtaagta aatttgtaga
      601 tctttttatc tctttaaaac cgaaatttat ctcttttcat atggaaagcg aagttcatcc
      661 tataaggctt tgtgaatata taagaagtca aggaatccat cctgctattg ttttaaatcc
      721 acatactcct attgattcta ttaaacacat gctagaattt gtagatatgg tgcttttaat
      781 gagtgttaat cctggatttg gtgggcaaaa atttttacct ttgatacatg aaaaaatcaa
      841 agaattgcgc caaatgattg ataaaaaaaa tgctaaagtt tttatagagg ttgatggtgg
      901 tgttaatggt ttaaatgcta gtgatttaga agaatctgga gctgatattt tggtggctgg
      961 aagttatatt ttttcttcca atgattataa aactgcaatt tcatctttaa agcttgaatt
     1021 ttgagtttac agcaaattga tcagattatt tctatattaa ataagcaaag caagccttat
     1081 gattgggtga tgcaagagtt tgccaaagtt gaagaattaa aaaattttga tttagattta
     1141 gaaacttttg agcttttggg gttaggttta actttaaata aagataatat ttttactctt
     1201 aaaacacgca caacaaaaat taaagatgaa attttttgca tagtggatat agaaagtact
     1261 ggtggggtga gcaaggggga aattttagaa attggagcgg taaaaattca aaattctaaa
     1321 gaaattggac gctttcaaag ttttgttaaa gtaaaagaaa ttccaaaaaa tataactgaa
     1381 cttacgggta ttacttatga gatggtggaa aatgctccaa gtttagcaaa ggttttaagt
     1441 gattttaggc tttttttaaa agacagtatt tttgtagcgc ataatgtgcg ttttgattat
     1501 agttttattt ctaaggcttt aaatgagtgt ggttttggca ttttgcttaa tcgtcgtatt
     1561 tgcactatag aatttgcaca atgttgtata gaaagtccaa aatataaact agaggttttg
     1621 aaagaatttc ttggcgtgga aaatatgcat catagagcct tagatgatgc tttggcagct
     1681 gctgaaattt ttaaatattg ccttggaaaa cttccttatc atataaaaac tacagaagaa
     1741 cttataaatt ttacaaaaac tgcacgtata aagcaaaaat aaatatttaa agtgtataat
     1801 aaaacataaa tgacgggagc ttgtgtaaca ggctgagagt aagctaaaag cttagaccga
     1861 accggatctg gataatgcca gcgtcgggaa gatttataaa tttcaatact ttaaaaattt
     1921 atactcaccc ttcatttatc caaatttttt aaaggataaa tttatgaaaa ctcaaatgaa
     1981 ttatgcgaaa gaaggtattt ttactaaaga aatgcagatt gttgcacaaa aagaaaattt
     2041 aagtaaagat tttttgcttg aaaatattgc ttgcggtaaa attattatcc ctgcaaatat
     2101 taatcataaa agtcttgatc caaatggtat aggttttgga ctgcgtacta aggttaatgt
     2161 aaatttagga gtttcaaatg attgtgttga ttatagcgag gaaatgaaaa aagtagagct
     2221 tgctcataaa tttgatatag aagcgattat ggacttaagc aattatggca aaacaagtcg
     2281 ttttagagac gagcttgtta atgtttcaaa agctatgata ggaacagttc ctgtatatga
     2341 tgcggtagga tttttagaaa aagatttaaa gcaaattaat gccaaagact ttttagatgt
     2401 tgtatatcat catgctaaaa gtggggttga ttttatgaca attcatgcag gtattaattc
     2461 tcgcgcagcg catattttta aacaaagtaa aagacttaca aatatagttt caagaggagg
     2521 ctctgtactt tatgcttgga tgatgatgaa agatgctgaa aatccttttt ttgagtatta
     2581 tgatgatttg cttgacattt gtttaaaata cgatgtaact ttatctttgg gcgatgcttt
     2641 gcgtcctggc tctactcacg atgcaagtga tggggcacaa atttcagaac ttatagaatt
     2701 atcactcctt actcaaaggg cttgggatgt tgggattcaa gtaatgatag aaggtccagg
     2761 gcatatggct attaatgaaa tagaggcaaa tatgcaatta gaaaagcgtt tatgtaaagg
     2821 agcgcctttt tatgtcttag gacctttggt aatagatatt ggcgcagggt atgatcatat
     2881 tagtggtgct attggaggag ctgtggctgc agctagcggt gctgatatgc tgtgttatgt
     2941 aacacctgct gaacacttaa gacttccaaa tttagaagat gttagagagg gtatagttgc
     3001 gactaaaatt gcagctcatg caggagatat agctaaactt ccaaaagaaa gagcaagaga
     3061 tgatgagatg agtaaggcta ggcaagagat agattgggag aaaatgttta aacttgctat
     3121 tgatggagaa aaggccaaaa aaatgtttaa tgagcgtcgt cctgatgatt taaactcatg
     3181 ttctatgtgt ggaaaaatgt gtgcaatgaa tactatgaat caaattttaa aaggcgaaga
     3241 tgtgagttta gcttgaataa actttgagag taagatctat agagatacct tgctctcctg
     3301 ctttaagatt aagtggataa tcaagcttga ttaagttatt atagtttttt agagcatcaa
     3361 taaaatcata aagccttcta ggattgttca ttgtcgcttt aatggctaag cggtttttta
     3421 gatatttttc ttgtttttcg ggcttagttt cttgaatttt tacattttga aaatattttt
     3481 gtaaaaaaat atcaaaattt cctatattaa aattttgctc aaattgctct aaacttttgt
     3541 tgttttcgct tcttagagtt gatattttat cttcactaaa gtcaaatttt aatttagcgg
     3601 cttttaagat agcaagttgt gagttttctc taagatttgc ttgtttataa ttttttaatg
     3661 tcggtaaaag taaaaataag atcaaggctg tgcaaacgct tataaaactt aacgcgcaaa
     3721 tgataagctt taataaatca atttcttcta gacttttatc tttcatctgc aactcctgga
     3781 atttgtttac taatactaac aaaacgatac cacccattat ctaagcgata ataggttgta
     3841 tagctttgat caaagatgct ttttaaaggg gtttctaaaa gtagagtaaa catttctctt
     3901 gtaggagtga ctccgataag ttttaaggaa tattcgtctt gttcaacact ttcaagagta
     3961 atattatcag tttttacaat aatatcaaat agatttctta agctttcttt aacaatttga
     4021 ttttgagtgt taaaattttt cgctatttgg ctttgatcaa ataaaatttc ataaagcatt
     4081 tcattttgct tagtttgatt ttgaagcact ataacttgtt gtttttcatt atcgatagag
     4141 ctattgatta atgcaatttt tattgtatat gtaaaatata ctagcaagat aaataatata
     4201 ctaaaaccaa aaagtcctag ccaaatttta tcaaagagtg tgaaaatagg tttttttctt
     4261 ggctgtatga agctataagt catttaagct ccttttgcat caattctatc ataagatcta
     4321 aggtgttgat ttgtttcgtt tttatctcta aaaaagtttc actttctaaa aaatcaatag
     4381 cacttatgtt aatatctgat tcactatata ataaaatacc attgataaat accccagcat
     4441 atttatcatc attataaaat ttttcaatgc tcgtaataat ataacggcat agttccatat
     4501 cattgctaaa ttgatttaat tcatcaagat taaaattatc attattattc aaagtttcaa
     4561 gattattttc ttgatcaagt agatcaaatt tattatttaa ggcttcattg aagttatcta
     4621 gggtaacttc agtatcattg ttgttgtttt caatttcttg attatcttct gatggaagtt
     4681 caagctctaa acctaattct tgctcaaata ttttaaaatc accgtataaa atagtattgc
     4741 ctttagcaac aataattgcc aaaagatgtc cttgcttaaa tccataaagt aaaatttgat
     4801 catcaggctg tttttctttt tgtatattgt agtaaagaag agcaaaaggg gaatataaaa
     4861 aatctaaacc tctatattct tcaaaaagct cgctataata ttccacatgt tcggtagccg
     4921 tataaacaag ggcattatta aacaaaatat gctgtaagct gatttttcct atattaaagt
     4981 gctcacaatc ttgaatattt gtactaggta ttaatccttg ttctttggca tctaaaaata
     5041 aagcagtgtg gtaaaataag aaatgcttgc ttaaattttt tatgtattct agtaaatttt
     5101 cgcttttatc aaaagttttt tcattgctac tgattagttt atttcctcta taaatagaag
     5161 cttttacaat atttttttta tcttctaaaa taatactaat aaaaagttgt ggaaatattt
     5221 ttttaagtaa aaataacatt tcattcctta aattgatcag ctaagctaat tttatcaaat
     5281 tgtttcatta gaaattcttt agctttttct ttatctaaag ataaaatatc caaaggttca
     5341 cttagactat aagtaatctt actaaaaggt tttggcaaga tcatcttatc ccaactttta
     5401 aatttccaaa aacgatttgc ttcatagttt aaaattctta tctttagttc ttttttttga
     5461 gccaaaatga tagaaccatc tgaaatacta tgataaggcc ctcgtggacc atcgggcgtg
     5521 ataactatat cgtcattttg ttctaaaact ttaaatgcag ctctaagtgc actgctagca
     5581 ccccttgaag tgcttcctct tacagtatca agaccgaaaa gcttgatgat ttttgcaatt
     5641 tgttctccat ctttatggtg ggagatcatg acataggctt ttttattttt ttgtctataa
     5701 tgtctaaacg caaaaggcat gagtgctaat tttccatgcc aaaaaagtat cacaccagct
     5761 ttacggtcaa ctttttcacc tttatagtgc tttttacagc ttaaaaaaat aagccattgc
     5821 aagatgaaaa ttatatatgt taagcaatgg attttaaacg atttccccat ataaaaccat
     5881 acgctttgca ttagttattt ttacttcttt aaattgccct aaaagttctt cgctaccttc
     5941 aacttgaact aaaaaattat tatctgttct tccagcaatg ctattgcctg ctcttaattc
     6001 ttcaaataaa actttaaaag ttttattttc ttgttttttt acaatttcat ctaaaatttc
     6061 actatgacga ttttgtaagg tgctaagtct tcttgaagct gtttcttcat cgatttgatt
     6121 aggcatggtt gcggcttttg ttaaagggcg tttggagtat ttaaaagaaa aaatttgttc
     6181 aaaacgcact ttttccaaaa catccatagt ttcttcaaaa tctttttcac tttcccctgg
     6241 aaaagctaca ataatgtctg tagaaatgct aacatttgga caaagttctc taagttttaa
     6301 agctctattt aaataccatt ctttagtata gccacgcttc atagctttta aaatttcact
     6361 tgagccgctt tgtaaaggca tgtgcatgga tttgcaaact tttggattat tggcaaaaac
     6421 ttctaaaaat ttatcatcca tgtgcaaagg atgtggactt gtaaagcgaa tgcgttccaa
     6481 accttctata gtgctaagtt cttctaaaag atctgaaaag tccatttttt tatgttcgtt
     6541 tctaaatctt ttgccatagt tattgacatt ttgtcctagc aagaaaatct ctttagcgcc
     6601 tttttcaata gctttttgag cttctttgta gatgatgtta aaaggtatgg aaatttcatc
     6661 tcctctagta tgtggcacta tacaataagt gcagtgtttg tcacaaccta tggagatatt
     6721 aatataggat ttataaatac tatttctaaa atctgcaaaa gcaaattcac tttcatcata
     6781 gtctatgtcc acgcccataa attttggagt ttttatagct tgagtgattt tggaaatatt
     6841 tcttgctcct agaacaaaat ccacataagg agcacgtttg aaaatttcat ttcctaaatg
     6901 tgatgcagta catccacaaa ctcctatttt agcaccttct tttttaactt tttcaaaacc
     6961 acctacttct gagaaaagtt tatgcacagg tttttcacgc actgaacagg tattgataag
     7021 aataagatct gcttctttga tatcttctgt tagtgcgtaa ttttcttttt gtgttaattc
     7081 tgcgatcata tgctcagaat ctctgacatt catcgcacaa cctaaagttt ggataaaaag
     7141 ttttttagca ctcaaagaat atgtacctca tacataaaat cattatcatc aagtccgtat
     7201 tttacggttc tatgataaat gcttactcct tttttttcaa aatgatttac aagggcaata
     7261 agttgtttgt gtgtattatc tttatcaaaa taaaaaaact tttgtccttc tttttctata
     7321 gcctcttcga ttttttctag gctaatattt ttaggttttt cattaatcaa agttcttgcc
     7381 aattttaatt ccatagctaa atccttaaga attttcattt taatctataa ttttagcaaa
     7441 ttttactttt aattaaactt attaaggata taatttttat ctacattttt aaatttccca
     7501 caaaaaaggt tttataaaat atggaaaaga tagcagatat tatcgaatct attgctaatg
     7561 aaaaaaattt aaacttagag aatgtaagag aaaaggtagc taccgcttta atcaatactg
     7621 caaaaagaat ttatggacaa gaatatgagt tttttgtgga tcctaaaaat ttaaatcttt
     7681 atcaaaaaat taccatagta gcagataatg acgagagatt gcaaaataaa agtgagagtt
     7741 ttatcgcgtt aagtaaggca aaatcagaag ctccagatgt tgaaatagga gatgaattaa
     7801 cctatgaatg ttctttggaa aatttaggaa gaactgcggt aaataccttg cataaagaac
     7861 ttgaatatca tatacaaaaa ttattagaac aaactatttt tgaaaaatat aaaaacaaag
     7921 tagggcaaat ggtttttggt acagttgtta gagtggataa tgaagaaaat acttttattg
     7981 aaatagatga attaagagct tttttaccga gaaaaaatcg cattaaaggg gaaaaattta
     8041 aaataggtga tgtggtaaaa gctgtgatac gccgtgttta tacagataaa ggtattaaaa
     8101 tcgagcttag tcgtacaagt cctaaatttt tagaatgttt acttgaagct gaggttccag
     8161 aaatcaaaga tggttatgtc aatattatag gatgtgctag aattccaggt gaaagagcaa
     8221 aaatcattct tcaggccaat ggagcaaata tcgatcctgt aggtgctaca gtaggtgtta
     8281 aaggtgtaag aattaatgca gtaagcaaag agcttcataa tgaaaatatt gattgtatag
     8341 aatttacaaa tgagagtgaa attttaattt ctcgtgcctt ggctcccgct attgtaaatt
     8401 ctgtaaaaat tgaagataaa aaagctattg taagtttaaa tagcgaacaa aaaagcaaag
     8461 ccataggaaa aaatggtatt aatattcgcc ttgcttctat gttaagtggt tatgaaatag
     8521 agctcaatga attaagctca tcacagctaa ataatgccat cagcaatgaa gaagcaatga
     8581 aaaatcttca agatttattt aaaatttaaa atatttgtga attttcacaa atatttttta
     8641 taaaaccact tccaataaaa tgccacaaag ataaaaatca tacccaataa gcctgtaatt
     8701 agttctaaac tcaagcctat ttcaaataaa aagcccataa gcattgaaat aatagcgcta
     8761 aaactaagat aaatcatatc tgtataagcg atcactctac catgatattc tttgtcggca
     8821 tttttttgta tcatagtgta ggtgtaagcc caaagtgctg aggtaaaaaa acctgcaccg
     8881 attaaaccta aaaaagaaat ataaaaatta aattgagtta aagcccaaag tataataccc
     8941 aagccttgac caagatacat gtaaaataaa tttttatcat taataaattt gcttaaaacc
     9001 ataggtccta tagctaaaga acaagcacgt actgcattta aaaaccctat tactaaagca
     9061 gcagataaaa cttctttata ttgatgttgc gctaaaagcg taaccaaggt ttcataagca
     9121 gttaaaccta taaaagcgtg aagcaagata agatgaaaaa ttatcttatt gtttaaaaca
     9181 tagaaaaatc cttcttttat catggtaaaa aagcgacttt gtgttttgtg atgaaaatca
     9241 ggaatgctta atcttactaa aaaagaaatg cctatgagta taagtataca gtcaaataga
     9301 aaagcggttt taactcctag aaaataaata aaaattcccg cacttgccat acctgctgta
     9361 taagaaatcg cccaaatgac actgtgcatt tcattagcga gtttaagttc ttgaggagtt
     9421 aaaattttgg ccaataaact catttcagct tgaaaataaa tcgaagcaac acaaagtctt
     9481 atgaaaatta aaataaataa aagccaaagc atactaagac ttgtgacaaa aataagacaa
     9541 aaaatagaaa ttaattctat gctaatcatg ctgagtaaaa gttttttagg tttatttttc
     9601 tctactatga cgccattaat aggagcaagt aaaactccag gtaaaaaagc aagcatagca
     9661 cttgtagctg ttgcccaagt aggagcatta agctcgacta aaagggtaaa aactcccgtt
     9721 tgagaaaacc atgctccaaa atatactata aactgaaccg aagccaatat tctgatattt
     9781 ttattatttt ttaatagttc aatgtaattc ataagcgaaa ctatagcata atttatattt
     9841 taaatgctat aattatttta attatgtaaa aaaacaagga aaaattttga aaagactgga
     9901 taaaaaagaa gctttagatt tattacacca tgcaagttta actgaacttg gagaaatggc
     9961 ttataaaaga aaattagaac ttcatcctga aaaaatcact acttttgttg tagatagaaa
    10021 tattaattat accaatgttt gttgtattga ttgttctttt tgtgcttttt atcgccatca
    10081 taaagaagat gatgcttata ttttaagctt tgaggagata ggcaagaaga tagaggagct
    10141 tgaagctatt gggggtacgc aaattctttt tcaaggcggg gtgcacccaa agttaaaaat
    10201 agaatggtat gaagaattag tttcttggat aaaagaacat tatccaaata tcactgtaca
    10261 tggtttttca gcggttgaga tcgcttatat cgcaaaggca tctaaaattt caattactga
    10321 agtacttcaa agactacaag ctaaaggttt attttctata ccaggagcag gtgctgaggt
    10381 gctaagcgat agggtgcgtg atattatcgc acccaataaa tgtgatacag ctacttggtt
    10441 agaagtacat cgccaagctc ataaaatcgg catgaaaagt acagctacta tgatgtttgg
    10501 aacggttgaa aatgatgaag aaatcatcga tcattttgag catttgagaa aattgcaaga
    10561 tgaaacaggg ggatttagag cttttatttt atggagcttt caaagtgata atactgcttt
    10621 aatccaaaaa catccagaga ttatgaaaca aagttctaac aagtatttaa gacttttagc
    10681 tttagcaaga ctttatttag ataattttaa aaatttacaa agttcttggg taactcaagg
    10741 ctcgcttata ggtcaacttg ctttaaaatt tggggccaat gatttaggct caaccatgat
    10801 ggaagaaaat gtagtaagtg ctgcaggagc aagttataga atgaatcaag atgagatgat
    10861 aaggctgatt agaagtttag gcgaaaatcc agctaaacgc aataccgctt atgaaatttt
    10921 agaaaggttt taatgcagta tttagacagt aggggtgtta aaatcccttt tatttttgaa
    10981 aaaaattctg attttcctat tgttgtttta aagcttgttt ttagaaattg cgctagaagt
    11041 tatgatgaaa tagcaggctt agctaagatg ttttcacgta ttttaaatga aggtgtggat
    11101 gataaatttt ttaaagattt agaatttaga gcgataaatt tagaggcaag tagtggtttt
    11161 gaaagtttgg aaatcaatct ttcttgttta aaagaaaatt ttgattttgc tttaaagagc
    11221 ttggaaaaat tgcttttaaa accaagaata gaagaaaaaa ttttgcaaaa attaaaaatc
    11281 aatgccttag gtgagctcgc gagtaaaaat agtgattttg attatttagc aaaaaattta
    11341 cttaatgctc aaatttttaa atgcaaagaa tttcaaagct caaacgatgg agatgaaaaa
    11401 agtatagaaa tcttatcttt aaaagattta caaaattttt ataaaaattt tatccatctt
    11461 agcgatttgg ttgtgatttt aggaggagat ttagaagaaa aacaagccaa ggaagatctt
    11521 ttaaaactat tatcaaaact tcaaataggc aaaaaaaata ctccaaaaaa atatgaatta
    11581 agcaaaaaca ttaaagatga aattttgata cgcccagaaa gcgaacaagc ttatatttat
    11641 tttgctacac ctttttttgc tgattttaaa gataaggatt tatatcttgc aaaaattgct
    11701 ttatttgttc tagggcaagg aggatttggt tcaaggatta tggaagaaat tcgtgttaaa
    11761 agaggtcttg catactcagc ttatgctatg cttgatatga atatgtcttt ttctagagtt
    11821 tttggatatt tacaaactaa aaatgaaagc gctaaagaag ctaaaaaaat cgtaaaagag
    11881 ctttttgaag attttataaa aaatggcatg actcaaaatg aacttgatca agctaaaaat
    11941 tttctcatag gatcaactcc tttgcgttat gaaagcttaa gcaagcgttt atctatgtct
    12001 tttaacgaat tttatcaagg tttaaatttg ggatattata aagaagagtt aaaacttatg
    12061 gaaaaggtta aacttgaaac cataaatgct tatattaaaa aacatcaaga gcttttaaat
    12121 ctaagttttg caagcataca aaatgaaaat taaagaaagt gattttgaat tttttaaaaa
    12181 attaaaaatt aaaagtgcta ttgatttagc gcttctttta cctaaaaaaa ttgaaaattt
    12241 aaatccaagt aaaaatccta aagaaaatga aatttgcacc caaaaaatca ctataaaaag
    12301 cgttagttca agaaaaaatc aactttttgg tttaggtttt tgtgaagaat ggcaagaaaa
    12361 tatttctttt gtgttttttc atcctagagc ttggcatttt gggatttgta aggtaggaaa
    12421 agggcttatt tttaatgcta aactctcgcg ttttaatcac acttggcaat ttaacaatcc
    12481 taaaatttta acttcttttg agggttttag tccaaagtat caaattttag gtttaaaaga
    12541 tgcaaaaatt gctgctttta tacataaata tcttaattat gaaaattta
//
LOCUS       DARGEY010000040        11876 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.040, whole genome shotgun sequence.
ACCESSION   DARGEY010000040 DARGEY010000000
VERSION     DARGEY010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11876
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.040"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            27..2057
                     /locus_tag="SF008_000948"
     CDS             27..2057
                     /locus_tag="SF008_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HEG8233227.1"
                     /translation="MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLS
                     KGVAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIA
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNY
                     EDQSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEEKYEFDEILVDEYQDT
                     NTLQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLG
                     LFADLEELARETRFKFESEFDAHPILRLSKINDLCARNLEKIYLFLKKAMEIKHSLTL
                     VNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI
                     YKYYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
     gene            2098..2838
                     /gene="peb2"
                     /locus_tag="SF008_000949"
     CDS             2098..2838
                     /gene="peb2"
                     /locus_tag="SF008_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HEG8233228.1"
                     /translation="MKKILILSLAAASFLNAEILVYGPGGPAPVLKELALKFEEKTKE
                     KVIVTAGPTSAWIDKAKENADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIV
                     RPNNPKNIKNFEDILKDGINVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAK
                     NSKAAVDEWNNNPNIDALIIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKALEN
                     KKALEFVDFIKSKEAQKVWKKYTWKEVK"
     gene            2937..3464
                     /gene="tpx"
                     /locus_tag="SF008_000950"
     CDS             2937..3464
                     /gene="tpx"
                     /locus_tag="SF008_000950"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HEG8233229.1"
                     /translation="MSTVNFKGNPVKLKGNSVEVGADAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVIVVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLINEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            3711..6485
                     /gene="napA"
                     /locus_tag="SF008_000951"
     CDS             3711..6485
                     /gene="napA"
                     /locus_tag="SF008_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HEG8233230.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEEDWKWDKAVCRF
                     CGTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNE
                     KGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEAMDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFDEFKKGLAPYTLEYTARVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLN
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKVADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DNKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNPNDAIAKGFDNTDVKGDERK
                     IQGSDGKEFTGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
     gene            6503..7243
                     /gene="napG"
                     /locus_tag="SF008_000952"
     CDS             6503..7243
                     /gene="napG"
                     /locus_tag="SF008_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HEG8233231.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLTLKADDNYTLRPPGAED
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFNVKKATNYLNDGEL"
     gene            7240..8022
                     /gene="napH"
                     /locus_tag="SF008_000953"
     CDS             7240..8022
                     /gene="napH"
                     /locus_tag="SF008_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HEG8233232.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRLFNTIPLS
                     DPFAVLQIILASWSIDLMALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            8019..8543
                     /locus_tag="SF008_000954"
     CDS             8019..8543
                     /locus_tag="SF008_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HEG8233233.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDMISDSRFNCTQCHVPQSDAKPLVENSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            8548..9462
                     /locus_tag="SF008_000955"
     CDS             8548..9462
                     /locus_tag="SF008_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HEG8233234.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKSLKELLSLPKIKNYYGDDFAKIYNIDVFKHTLLILSEGDFGAKNLSFYK
                     ENLQIKKLEENSIIKAFFINENTYLLISIGSEIELIDKSLKNIKKFNFSHSSLNDAVL
                     NEDKSRLVAGFESGEVELFDLKNWKMLKNYDKMHKDNIYQVDFKNNVILSCGTDRRIG
                     VVKNEEQNFLQKDFLIYTCALSPSGEFAVYSDNEAGVSEVFSTSDFKPVKTFNNENLM
                     SEFIIFLNNKDFIVSGFGDSIMFRSIDE"
     gene            9455..9793
                     /locus_tag="SF008_000956"
     CDS             9455..9793
                     /locus_tag="SF008_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HEG8233235.1"
                     /translation="MNNLSSVLILAKEECINDLKKAISEIPFCSVELCENEKIIVVIE
                     SENLEDELNSYKMLEKLPNIISINMVFSYQDLNDDIQKAINSGAIETIEKNENAENVR
                     YYGSVFNQFS"
     gene            9803..9976
                     /gene="tatA2"
                     /locus_tag="SF008_000957"
     CDS             9803..9976
                     /gene="tatA2"
                     /locus_tag="SF008_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA2"
                     /protein_id="HEG8233236.1"
                     /translation="MVFLIPLLIIIGVIFGIDYVYFKNQDLKAQVKKEQKELNSSLEK
                     EKKEYIEKLFKTK"
     gene            10055..10303
                     /locus_tag="SF008_000958"
     CDS             10055..10303
                     /locus_tag="SF008_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEG8233237.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPDNQNAIDAVRR
                     LSGFRSKHKDLNTQMLDFFINMKSDEEINEFKRWLIKI"
     gene            10300..10791
                     /locus_tag="SF008_000959"
     CDS             10300..10791
                     /locus_tag="SF008_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HEG8233238.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMEFVCEELDTPQDLEDKISMAKFEEEQKIQNNIEISTQENKEFKKEEPFLQSEILNP
                     SVMTEVQTLNEDIFLKHLRERILVLFEGLNSIKKDDLENRLNLTINFLEFLLANIEDK
                     LKK"
     gene            10760..>11876
                     /locus_tag="SF008_000960"
     CDS             10760..>11876
                     /locus_tag="SF008_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEG8233239.1"
                     /translation="MQISKISLKNNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKI
                     CDYDIELYDIKPKDFEKIMQKLGAQGFGKSFFVYKFKNYDLALARTENKISYGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGAGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQ
                     ELDLEKQIFGFESIFKSLEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRTKL
                     QKEYLKYANQAFYLDDISDFELAKIAFEMPLKKWLGLWSKKRIEQAKRLGLYENKFES
                     KILAKDFINAGFCGKILGLKLQEARENELKEYIKGLAK"
BASE COUNT         4246 a         1383 c         2317 g         3930 t
ORIGIN      
        1 taattttaac ttttataagg aaaataatgc cactttcaaa attaaataat gaacaatatc
       61 ttgccgctac tgctgatttt ggacacaatc ttgttattgc aagtgcaggc acgggaaaaa
      121 cttctactat tgttgcaaga atttcttatc ttttaagcaa gggagtggca cctcaaaaaa
      181 tcatgctttt gactttcaca aataaagcca gcaaagaaat gatagggcgt ttagggaaat
      241 tttttgataa aaatattacc agtaaaatac ttgcaggaac ttttcatagt acggcttata
      301 ccttacttag aaatgcggat aaaaatatag ccttaaagca agcaagcgag ttaaaaactc
      361 tacttaaaag tgtctatgaa aaaagaactt ttaggcattt aagtgatata aaaccttatc
      421 aatcaagtta tttatacgat ctttattctt tgtttcaaaa caaagcacac aatcaagatt
      481 tttatacttg gttttgtcaa aactatgaag atcaaagtat ttatgctgaa atttatgaag
      541 atattttaaa agaatatgat aatgaaaaaa agcgttttaa ttatgtggat tttaatgact
      601 tgcttatcaa tctaaaagat cttttaaaag aagaaaaata tgaatttgat gaaattttag
      661 tagatgaata tcaagacaca aatactttgc aaagttcttt aatagaggct tttcatagta
      721 aaagtttgtt ttgcgtaggg gattatgatc aaagtattta tgcttttaat ggagcggata
      781 ttaatatcat aggtgggttt aaagatcgtt ttaaagatgc aaaaattttt tctttaaata
      841 aaaactaccg ttcatcaaga agtattttag ctttggctaa taaagtgatt ttaaataacg
      901 aaagattata tccaaaagaa cttattgtta caagaaatga tgagtttaaa gccccatctt
      961 tgcttacttt tgaagaatta tttgatcagt atcaaaatat agccaaaatg atacttacaa
     1021 gcggagtaag tttggaagaa attgccgtga tttttcgcaa caactcaagt gctgatgggg
     1081 ttgaagtagc tttaagggag cagggcattg caagtgtgag aaagggaagt ggaagttttt
     1141 ttgaaagttt ggaagttaaa gcttttagct ccatgcttgc gcttgtggta aatcctaaag
     1201 atatcatggc ttttattcat ttggttcaat ataccaaagg tgtgggtgga gttttagcaa
     1261 aagaaatttt tgacgcactt ttaaaattag ggcatggaaa tttaataaaa ggttttttag
     1321 atcctgataa aaatgtaaat ttgcaaaatc atcaaaaaag aaattatcaa cttgggcttt
     1381 ttgcagattt agaagaatta gctagagaaa ctcgttttaa atttgagagt gaatttgatg
     1441 cacatcctat tttaagactt tcaaaaatca atgatttgtg cgctagaaat ttggaaaaaa
     1501 tctatctttt tttaaaaaaa gctatggaaa taaaacattc tttgacttta gtcaatttaa
     1561 tttgcgaaaa ttctttttat agagaaattt gcgaagaact tgcaaccaaa agagcgacaa
     1621 ataaagcagg gcaggtggat ttattaagaa agagtgaaaa tttagaaaaa atagaaacaa
     1681 aatttaatgt cttaaaagag cttacaaaaa attatagcga tatttataaa tattataatt
     1741 ttctaacttt aggtgcaagt gaaatgagta gtggcaaagg agttaatttg cttagcgtac
     1801 atgcaagtaa gggcttggaa tttgatcttg tttttgtgat tgatcttgcg caaggtcgct
     1861 ttcctaatca aaagcttatg ggaatgggtg gaagcttaga agaagaaaga aggctttttt
     1921 atgttgcagt aactagggca aaaaatatac tttatttaag ctatgctaaa tatgataaaa
     1981 acaaaaaaac ttcttttgct ccttctcgtt ttcttataga agcagggctt tgcaagggag
     2041 agttaactat agattgataa aatttccttt atattattat aaagaaaggt ttattttatg
     2101 aaaaaaatat taattttaag tttagcagca gcaagttttt taaatgctga aattttagtt
     2161 tatggtccag gtggtcctgc tcctgtgcta aaagagcttg ctttaaaatt tgaagaaaaa
     2221 acaaaagaaa aggtgattgt aaccgcaggc ccaacttcag cttggataga taaagcaaaa
     2281 gaaaatgcag atttgatttt ttcaggcaat acttcaatga tggatgattt tgctaaaaaa
     2341 attccaagtt taagtttgga aaatttaagc gttttaaatg tgcgtccatc aggtattatc
     2401 gtgcgtccaa ataatccaaa aaatattaaa aattttgaag acattttaaa agatggtata
     2461 aatgttatgg tggttgatgg tgcaggacaa gttggacttt atgaagatat ggctttaaaa
     2521 agtgcaaaaa gagaaaattt ggtaaaatta cgtaaaaata taaaaattta tgctaaaaat
     2581 tccaaagctg ctgtagatga gtggaataac aatccaaata ttgatgcttt aatcatttgg
     2641 tctcattggg caaaggcttt aggcgatgat aaagctttat ttatcaaaga taaaaatgca
     2701 gtgatttatc gtgcagctga aattgctcct acaaaaaaag ctttagaaaa taaaaaagct
     2761 ttagaatttg tagattttat taagagtaag gaagctcaaa aagtgtggaa aaaatatact
     2821 tggaaagaag taaaataatt ttgagtgaaa ttaaaaaata attaatattt ataggatata
     2881 atcactccta aaacattaat tgcaataatg tttaaaatat caaaaaagga aattaaatga
     2941 gtacagtaaa ttttaaagga aatcctgtaa aacttaaagg aaattcagta gaagttggag
     3001 cagatgctcc taaggtaaat cttaaagcta aagatttaag cgtgattgaa atcggtgcag
     3061 cgggtaaaac tcaaatcatt ttaagtgttc caagcttaga tacaccagtt tgtgctacag
     3121 aggctagaga atttaataaa aaagtagcca gttacaatgg tgctgaagtg attgtagtaa
     3181 gtatggactt accttttgct atgggaagat tttgcagtac agaaggtatt gaaaatttaa
     3241 gtgttgcaag tgattttgtg gcaaaagaat ttggtgaaaa atatggtgtt ttgataaatg
     3301 aaggtgcttt agaagggctt ttagctcgtg ccgtatttgt gattaaagag ggtaaagtgg
     3361 catataaaga acttgtaaat gaaatcacag aaatgccaga tattgcaaaa cttgatgcat
     3421 tttttggtgg ttctagctgc tgcggtggtt gtggttgcca ttaattttga ttaagcccat
     3481 tcttagggct taatttttat atcttcattt ttttattatt ttaagttgat tatattttaa
     3541 ttgttaagtt gattattttt gatatttatt ttgtgtaaga ataatataaa aaggacaata
     3601 aaactcctat aaaatagagc tttaaaatta ttatttttat taaaatttca agagattttt
     3661 atacttcatt ttttataata agatgatttt tttattttgg aggaataagg atgaatagaa
     3721 gggattttat taaaaatacc gctattgcaa gtgctgctag tgttgcaggg cttagtgttc
     3781 caagctctat gcttggcgcg caagaagaag attggaaatg ggataaagct gtttgtagat
     3841 tttgtggaac tggctgtgga attatgatag ctagaaaaga tggcaaaatc gtagcaacaa
     3901 aaggtgatcc tgcagcaccc gtaaatcgcg gacttaattg tatcaaaggt tattttaatg
     3961 ctaagatcat gtatggtgaa gatcgtcttg ttatgccttt gcttcgcatg aatgaaaaag
     4021 gcgaatttga taaaaaaggc aaatttcaac aagtttcttg gcaaagagcc tttgatgaaa
     4081 tggaaaaaca atttaaaaaa gcctacaatg aactcggcgt tacaggtata gggatttttg
     4141 gtagtgggca atacactatc caagaaggtt atgctgcttt aaagcttgca aaagcgggtt
     4201 ttagaacaaa taatatcgat ccaaatgcaa gacattgtat ggcctctgca gtggttggtt
     4261 ttatgcaaac ttttggtgta gatgagccat caggctgtta tgatgatata gagcttacag
     4321 atactattat cacttgggga gctaatatgg ctgaaatgca cccaatcctt tggtcaagag
     4381 taagtgatag aaaactaagc aatcttgata aggttaaagt tgttaatcta agcacttttt
     4441 ctaaccgtac ttcaaatatt gctgatattg aaattatttt taaaccaaat acagatttgg
     4501 ctatttggaa ctacatagca agagagattg tttataatca tccagaggct atggatatga
     4561 aatttatcaa agatcactgc gtatttgcaa ctggttatgc tgatattggt tatggtatga
     4621 gaaataatcc aaatcatcca aaatttaaag aaagtgaaaa agatacggtt gaaaaagaaa
     4681 atgtaatcac tttagacgat gaagaggcta cttctttatc ttatcttggc gttaaagcgg
     4741 gtgataaatt tgaaatgaaa catcaaggtg tggctgataa aaactgggaa atttcttttg
     4801 acgaatttaa aaaaggttta gccccttata ctttagaata cactgcaaga gtagccaaag
     4861 gtgatgataa tgagtctttg gaagatttta agaaaaaact tcaagaatta gctaatcttt
     4921 acatagagaa aaatcgcaaa gtcgtaagtt tttggactat gggctttaat caacacacaa
     4981 gaggttcttg ggtaaatgaa caagcttata tggtacattt tttgctagga aagcaagcta
     5041 aaccaggtag tggagccttt tctttaacag gacagccaag tgcctgtgga acagctaggg
     5101 aagtaggaac tttctcacat cgtttgcctg cagatatggt tgtagccaat ccaaaacaca
     5161 gagaaatttc tgaaaaaatt tggaaagttc ctgcaaagac tatcaaccca aaaccaggtt
     5221 ctccttatct taatatcatg agagatttag aagatggaaa aattaaattt gcatgggtgc
     5281 aagtgaataa tccatggcaa aacactgcaa atgcaaatca ctggattgca gcagcaagag
     5341 aaatggataa ttttattgtt gtaagtgatt gttatcctgg aatttcagca aaagtagctg
     5401 atcttatttt accaagtgct atgatttatg aaaaatgggg tgcttatggt aatgctgaaa
     5461 gaagaactca acattggaaa caacaagtct tacctgtggg tgctgccatg agtgatactt
     5521 ggcaaatttt agaatttgca aaacgcttta agcttaaaga agtttggaaa gagcaaaaag
     5581 tggataataa gcttaccttg ccaagtgttt tagaagaggc aaaagctatg ggttatagcg
     5641 aagatgatac actttttgat gtactatttg ccaataaaga agcaaaaagc tttaatccaa
     5701 acgatgccat cgcaaaaggc tttgataata ccgatgttaa aggtgatgag agaaaaattc
     5761 aaggcagtga tggaaaagaa tttacaggct atggcttttt cgttcaaaaa tatctttggg
     5821 aagaatatcg taaatttggc ttaggacacg gacatgattt agcggatttt gatacctatc
     5881 ataaagtaag gggtttaaga tggcctgtgg ttaatggcaa ggaaacacag tggagattta
     5941 atactaaatt tgattattat gctaaaaaag cggctccaaa ttcagatttt gctttttatg
     6001 gtgattttaa caaaatgctt acaaatgggg atttaatagc tcctaaagat gaaaaagagc
     6061 acagtattaa aaataaggct aaaattttct ttaggccatt tatgaaagca cctgaaagac
     6121 caagtaaaga gtatccgttc tggcttgcaa caggaagggt tttagagcat tggcatagtg
     6181 gaactatgac tatgcgtgtg cctgagcttt accgtgctgt gcctgaagca ctttgctata
     6241 tgagtgagaa agatggagag aaattaggct taaatcaagg tgatttggtt tgggtggaat
     6301 ctcgtcgtgg taaagtaaaa gcaagagtag atatgcgtgg aagaaacaaa ccgcctgtag
     6361 gacttgtgta tgtgccgtgg tttgatgaga atgtatatat caataaagtt actttggatg
     6421 cgacttgtcc actttcaaaa caaactgact ttaaaaaatg cgctgtaaaa atttataagg
     6481 cttaatttag ggttttgatt aaatgaaagg tagaagagaa ttttttgtta gtgcttttaa
     6541 ggctgcatgt ttatgtacag gaggtggatt tttggctaat ttgactttaa aagccgatga
     6601 taattatacc ttgcgtcctc ctggggctga agatgaagct agatttttaa gcaaatgtat
     6661 tcgttgtggg ctttgtgtaa aagcctgtcc ttatgatact ttaaagcttg ctagcttgtt
     6721 agatagtcca aaaaatggca cgcctttttt taaggcaaga gaaattcctt gctatctttg
     6781 taaggatatt ccttgcatta gagaatgtcc aactgatgct ttagataaaa agcatttaga
     6841 gcagggtata gaatctttga aaatgggtat tgctattgtt gatagtgctt cttgtgtggc
     6901 acactgggga attcaatgtg atgcttgtta tagagcctgt cctttgatag atagggcttt
     6961 aaaacttgag cttaaacgca atgaacgcac cgccaaacat gcttttttac tacctagtgt
     7021 ggatcatgaa gtgtgtgtag gttgtgggct ttgtgaactg gcttgtatta ctgaaaaacc
     7081 ggccattcgt gttttgccaa gggagtatgt attgggaaaa gcaggatctc attatgtaaa
     7141 aggctgggat gaaaaagatg aaggtcgtat aaaaaatgca gatacttcaa aacattttaa
     7201 tgttaaaaaa gcaaccaatt atttaaatga tggagaactg tgatgaagta tttaattgct
     7261 agacgcatcg ttcagcttgg aattttagcg ctttttagtt ttaaagctac agattttatc
     7321 ttgcagggaa atttaagttc ttctagactt tttaatacca tacctttaag cgatcctttt
     7381 gcagttttgc aaatcattct agcaagctgg agtatagatt taatggcttt aataggagct
     7441 ttgattatat tttttatcta tggtttgctt ttaggaaggg ttttttgctc ttgggtttgt
     7501 cctgttaatt taatcacaga ttttgctgct tttgtgcgaa ataaattaac ccttaataat
     7561 aaatttttaa ttttgcctaa aaatttacgc tattttgtat tggtcttggt tttagtcctt
     7621 tcttttgtat tttcattgcc tgtgtttgaa agtttttctt atataggaat gatacataga
     7681 gggattattt ttgctacaag ttcttggatt tttgtagcct ttatactttt ttgtatcgat
     7741 acttttttaa gtcctagggc aatttgttca catttttgtc cactaggagc tttttatgct
     7801 tttatttctc gttttgcttt gcttaaaata aagcatgata gtgataaatg cactaaatgt
     7861 tatgaatgta tccgtatttg tcctgaaaaa caggttttgt ggatggttgg aaaagaaagt
     7921 actagcgtga aatcgggaga gtgtataagg tgtgcaagat gtatagaagt ttgtaatgat
     7981 gatgctttga attttaatat ttttgattta aggaataaat aatgaagaag aaattggttt
     8041 tattaggaag tgctgcagtg gtattttttg ccgcttgtgc aatgaatagt ggggtaagtt
     8101 cagaacaaat tggacttaga aaagcaagtt tagaaaatga aaataaagta aatttagtgg
     8161 aggcaaattt cacaacttta cagcctgggg aatctactcg ttttgagcgt tcttatgaaa
     8221 atgcaccacc gttaattccg catgctattg aagatttgtt acctataact aaagataaca
     8281 atatgtgctt aagctgccat gataaggcta tagcagcaga tgctggtgca actccacttc
     8341 ctgctagtca ttattatgat tttagacaca ataaaaccac aggagatatg attagcgata
     8401 gtcgttttaa ttgcactcag tgtcatgttc cacaaagtga tgcaaaacct ttagtggaaa
     8461 atagctttaa acctgaattt aaaaatgaac aattaaaaag tcgttcaaat ttaattgatg
     8521 tgattaatga gggtgtaaag taaataaatg aaaaaatttc tttttatttt gagtcttttt
     8581 tgtgttttgt cttatgctta tgagctgaaa ttaaatgcta atataacagc tttaaagctt
     8641 gataagcaaa acttatatat aggcactgat aaaggtgaaa ttttacaata taacattaaa
     8701 gataaaagtt taaaagaact tttatcttta ccaaagatta aaaattatta tggtgatgat
     8761 tttgctaaga tttataacat tgatgttttt aaacatacac ttttaatact tagcgagggt
     8821 gattttggtg ctaaaaattt aagtttttat aaggaaaatt tacaaatcaa aaagctcgaa
     8881 gaaaatagca taataaaagc attttttatc aatgaaaaca cttatctttt gatttctatt
     8941 ggttctgaaa tagaattgat tgataaaagt ttaaaaaata taaaaaaatt taatttttcc
     9001 cattctagtc ttaatgatgc agttttaaat gaagataaga gtagactagt tgcaggtttt
     9061 gagagtggcg aagtagaact ttttgatttg aaaaattgga agatgttaaa aaactatgat
     9121 aaaatgcata aagataatat ctatcaagta gattttaaaa ataatgttat tttaagttgt
     9181 ggaacggata ggcgtatagg agttgtaaaa aatgaagagc aaaatttttt gcaaaaagat
     9241 tttttgatat atacttgtgc tttaagtcct agtggagaat tcgctgttta tagcgataat
     9301 gaagctggag ttagtgaagt ttttagcaca agtgatttta agcctgttaa aacttttaat
     9361 aatgaaaatt tgatgagtga gtttattatt tttttaaaca ataaagattt tatcgtttca
     9421 ggctttggtg atagtataat gtttaggagt attgatgaat aatctttcta gtgttttgat
     9481 tttagcaaaa gaagaatgta taaatgattt aaaaaaggct atatctgaaa ttcctttttg
     9541 ttctgtagaa ctttgtgaaa atgaaaagat tatagttgtg attgaaagtg aaaatttaga
     9601 agatgagtta aactcttata aaatgcttga gaaattgcca aatattatca gtattaatat
     9661 ggttttttct tatcaagatt taaatgatga tatccaaaaa gcaatcaata gtggtgcaat
     9721 agaaacgata gaaaaaaatg aaaatgctga gaatgttcgc tactatggta gtgtatttaa
     9781 tcaattttct taaagtgtaa agatggtatt tttaatccca ttgcttatta taattggtgt
     9841 tatttttgga attgattatg tgtattttaa aaatcaagat ttaaaagcgc aagttaaaaa
     9901 agaacaaaaa gaattaaatt ctagtttaga gaaagaaaaa aaagaatata tagaaaaact
     9961 gtttaaaaca aaatagacat taaaaaacat cttattttct taaagataaa ttaaaaagct
    10021 ttttgctaga attaaagaaa aattttagga aacagtgatg aaaaatacag tcactgaagc
    10081 ttctatctat gaggctcaag ggttaaaaga cgaagcttta gaaatttata aaaatatctt
    10141 aaaagaagat ccggataatc aaaacgctat cgatgcggtt cgtcgtctta gtggttttag
    10201 atccaagcat aaagacttaa acactcaaat gttggatttt tttattaata tgaaaagcga
    10261 tgaagaaatt aatgaattta aaaggtggtt gataaaaata tgaatttgga agatttagct
    10321 aaaaaaacca ttagcgaagt tagctctatc atggaagagc aaagaagaca aaatgaaatt
    10381 ttaaaagaac aagaattaaa tagaaaaact gaaataaaag atgaattacc acctatggag
    10441 tttgtatgcg aagagcttga tactccgcaa gacttagaag ataaaatttc tatggcaaaa
    10501 tttgaagaag agcaaaaaat acaaaataat attgaaattt ctactcagga aaataaagag
    10561 tttaaaaaag aagagccttt tttacaaagt gaaattttaa atcctagtgt tatgacagag
    10621 gttcaaacgc ttaatgagga tattttttta aaacatctta gagagagaat tttagttctt
    10681 tttgaaggtt taaatagcat aaaaaaagat gatcttgaaa ataggttaaa cttgaccata
    10741 aattttttag agtttttact tgcaaatatc gaagataagc ttaaaaaata atcccgattt
    10801 acagtttatt gctgagtttt taaagcctta taccaaacga gcgtatttgg ttggaggtag
    10861 cgttagggat ttgtttttag gcttaaaaat ttgtgactat gatatagagc tttatgatat
    10921 aaaacctaaa gattttgaaa agattatgca aaaattgggc gcacaaggct ttggaaaaag
    10981 tttttttgtg tataagttta aaaattatga tttagctctt gctagaaccg aaaataaaat
    11041 aagctatgga cataaaggtt ttgaagttca aatttgtaat gatgaaaaac ttggcgccaa
    11101 aagacgcgat tttaccataa attctatgat gattaatctt tttaacgatg agtttttaga
    11161 tttttatgga ggattaaaag atctaggagc aggcttttta aggcatattg ataaacaaag
    11221 ctttcaagag gatagtttaa gagtattaag agcggtagta tttgcttcaa ggtttaactt
    11281 taagataact agcgaaagct tgaaattgat gcaaagtatg gatataactg atcttagcaa
    11341 agataggatc aatgcggagc tttataaatt ctttaaaagc cctagacttg atgttggcta
    11401 tagatatttg caagaacttg acttagaaaa acagattttc ggctttgaga gtatttttaa
    11461 gagtttggaa tttcaaaatt tgctcagaca aagtagagaa tttgtaaaaa gcgatgcttt
    11521 attcttgtat ttgtatttga atttttttaa tttagaaaaa gatatatttt ttaaaagaac
    11581 caaacttcaa aaagaatacc taaaatacgc aaatcaagct ttttatcttg atgatataag
    11641 tgattttgag ctagcaaaaa ttgcttttga aatgcctttg aagaaatggc ttggactttg
    11701 gagtaaaaag cgtattgagc aagctaaaag attagggctt tatgagaata agtttgaaag
    11761 taaaatttta gcaaaagatt tcataaatgc tggattttgt ggtaaaattc ttggcttaaa
    11821 gcttcaagaa gcaagagaga atgaattaaa agaatatata aaaggtttag ctaaat
//
LOCUS       DARGEY010000041        11364 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.041, whole genome shotgun sequence.
ACCESSION   DARGEY010000041 DARGEY010000000
VERSION     DARGEY010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11364
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.041"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..752
                     /locus_tag="SF008_000961"
     CDS             <1..752
                     /locus_tag="SF008_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8233240.1"
                     /translation="ILEKGMFKEFNLLNEKLLKTKDKILKNTQKNKKQSDKITLKNTQ
                     LASVISAISHELKNPLSVIDLSLEMLKDEKLEDKKLKKELLEKISRQSVKLNALTHKL
                     NFVFNLNSEALQMQEFDLFSLCEKITKNPGFERVALQGKSTKVKADEFLIEQVIINLL
                     SNALKYSQKKVILTARDQKIIVQDFGKGIEEDKIKLITKKFYKIDVKSDNSFGLGLFL
                     VKKILNIHKSYLEISSTLGYGSSFSFKLSQG"
     gene            756..2687
                     /locus_tag="SF008_000962"
     CDS             756..2687
                     /locus_tag="SF008_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEG8233241.1"
                     /translation="MALIDLIEASKKFGDKIVLNEVNFSANEGEKIAIIGKNGEGKST
                     FLKTLLGTLPLDSGRIIRQNGKSIAMLSQTVDFNANLSVKEAIKQELVEIYNTLEEYE
                     ILHKKLEEDPSNKDYLQKIDTLMTLIDSKDAWSIESKIIRVLKEFSLLEYENRIISTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVEQGKLSIFKGGYANYLEKKTQILQSLAKSHETLLKQLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGAIKRLKLEISRAALNFNREKTINRKKMLFEL
                     KNISKNINNKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDSGEIKRGE
                     LKIGYFDQARSLVNSDKSLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     ALLSGGEKNRVALALLFTKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYAFEGNGYINILHTLYTEYLENEKEIEELDNFALELQTQEQNNNQKE
                     KSSKKLSYKENEILKNHPEKIDFLEQKIAKLNQDLSDPNVYQEIGINKLYQELEVMQK
                     ELEILENEYFLVLEKSENL"
     gene            complement(2716..2790)
                     /locus_tag="SF008_000963"
     tRNA            complement(2716..2790)
                     /locus_tag="SF008_000963"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2756..2758),aa:Gly,seq:gcc)
     gene            complement(2801..2887)
                     /locus_tag="SF008_000964"
     tRNA            complement(2801..2887)
                     /locus_tag="SF008_000964"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2851..2853),aa:Leu,seq:caa)
     gene            3069..5321
                     /gene="flgL"
                     /locus_tag="SF008_000965"
     CDS             3069..5321
                     /gene="flgL"
                     /locus_tag="SF008_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HEG8233242.1"
                     /translation="MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQGYVKDNSLDADKDFEYDDSKLDFPPTTLYVQGTRPDGTSFKSAVLVKPEDTL
                     EDVMENIGALYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADDKTE
                     LNNIIQAAQDEGITMEDVTNRVMTAALGNPNNGDITNLNNPVTIQINGQNFEIDLKQT
                     DFIKSKMTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMA
                     GDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNS
                     GVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNSQINNADYTQIQQLMKDSQATVD
                     VSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSL
                     TIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNT
                     TMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTT
                     ISQLSLLNYM"
     gene            5431..8271
                     /locus_tag="SF008_000966"
     CDS             5431..8271
                     /locus_tag="SF008_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HEG8233243.1"
                     /translation="MLAPGMGEWVYKANLFLFGEFGYYYPFSLLILNYLYYKKKYKIE
                     NFKRRELFGFSLAFFSTLLLFSVFYREFGYILEIVYGFFSIILGRTGSGIFALLLLLF
                     SLVLLFPKFAKEILKIELDFTYLLKVEQAFKSLLMRVFGGENEKEDVGKSEPIAPKLN
                     ILQDSIYGNLQINKKGETNNLEQIIKDSNINASKNSITTAKENFEKLKNQILDETIEI
                     DKQSLKESRSFVHEHSQQVRNFAQKASKMSISLDEDFNFISEEEVDMIPERFLKPKKL
                     EDIKQIDTNKNLDEPSYKRKNIEIPVSNQEVKPKIFTKELELRENLIKKEKLEQEYKA
                     YQNEILENKVKQEIKKLEEYDAINSSDIIEGNKYSFNSPKTIKTETEESDKINENKNL
                     DKADNIFEFAPIVEELNHPYIEPTPIKNINEIVIEEKNTLDFIQNTETKIDNEKTNDQ
                     EIKLQKAVLAKEIAINQALLREIEQGEVEKPKDFTLPPLDFLANPKEHKQEINESEID
                     KKIYNLLEKLRRFKIGGDVISTYVGPVVTTFEFRPSADVKVSRILNLQDDLTMALMAK
                     SIRIQAPIPGKDVVGIEVPNDEIQTIYLREILQSEVFKNAKSPLTIALGKDIVGNAFV
                     TDLKKLPHLLIAGTTGSGKSVGINSMLLSLLYRNSPKTLRLMMIDPKMLEFSIYNDIP
                     HLLTPVITDPKKAVNALSNMVAEMERRYRLMADAKTKNIENYNEKMKELGGEELPFIV
                     VIIDELADLMMTAGKDVEFYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPSR
                     ISYKVGQKIDSKVILDAMGAESLLGRGDCLFTPPGTSSIVRLHAPFASEFEIEKIVDF
                     LKDQQSVEYDESFLKDQQSVGVTTNESFDGEVDELYEEAKRVILEDGKTSISYLQRRL
                     KIGYNRSANIIEQLTQNGILSEPDAKGQREIL"
     gene            complement(8357..8629)
                     /gene="rpsO"
                     /locus_tag="SF008_000967"
     CDS             complement(8357..8629)
                     /gene="rpsO"
                     /locus_tag="SF008_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEG8233244.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLITELNLRDK"
     gene            8804..9214
                     /locus_tag="SF008_000968"
     CDS             8804..9214
                     /locus_tag="SF008_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HEG8233245.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSITLEDIMKNNGKK"
     gene            9201..>11364
                     /gene="flhA"
                     /locus_tag="SF008_000969"
     CDS             9201..>11364
                     /gene="flhA"
                     /locus_tag="SF008_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HEG8233246.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAAASQSGAGGTTATPAKKSEEEILKEEEHKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGALGVAPVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGIIR"
BASE COUNT         4280 a         1543 c         1982 g         3559 t
ORIGIN      
        1 ttatattaga aaaaggaatg tttaaagaat ttaatttact aaatgagaaa cttttaaaaa
       61 ctaaggataa aattctaaag aatacccaaa aaaataaaaa acaaagcgat aaaatcactt
      121 taaaaaatac tcagcttgct agcgtgattt ctgctatttc tcatgagctt aaaaatccat
      181 taagcgtgat tgatcttagc ttagagatgc taaaagatga gaaattggaa gataaaaaat
      241 taaaaaagga attactagaa aaaatttcac gtcaaagcgt taaacttaat gctttaaccc
      301 ataagcttaa ttttgttttt aatcttaata gtgaagcctt gcagatgcaa gaattcgatc
      361 ttttttctct atgtgaaaaa atcactaaaa acccaggctt tgaaagagtt gcattgcaag
      421 gtaaaagcac gaaagttaag gctgatgaat ttttaatcga gcaagtgatt ataaatttgc
      481 tttctaatgc tttaaaatat agtcaaaaaa aagtcatttt aacggcaaga gatcaaaaga
      541 taatagtgca agattttgga aaaggcatag aagaagataa aataaaattg attacaaaaa
      601 aattttataa aattgatgta aaaagtgata attcttttgg tttgggactt tttttagtaa
      661 agaaaatttt aaatatacat aaaagttatc ttgaaatttc tagcacttta ggttatggtt
      721 ctagttttag ctttaaactc agtcaaggat aaaaaatggc tcttatagat ttaattgaag
      781 cttcaaaaaa atttggagac aaaatagttt taaatgaagt aaattttagc gcaaacgagg
      841 gagaaaagat tgctattata ggcaaaaatg gagaaggaaa atctactttt ttaaaaacgc
      901 ttttaggcac acttccttta gatagcggta gaataataag acaaaatgga aaaagcatag
      961 ccatgctttc acaaaccgtt gattttaatg caaatttaag cgtaaaagaa gccatcaagc
     1021 aagagcttgt agaaatttac aataccttag aagaatatga aatactgcat aaaaaattag
     1081 aagaagatcc tagtaataaa gattatcttc aaaaaataga tacgcttatg actttgattg
     1141 atagtaaaga tgcttggagt atagaatcta aaataatacg cgttttaaaa gaatttagtt
     1201 tacttgagta tgaaaatcgc attatatcta ctttaagtgg tggagaaata cgccgcgttg
     1261 ggctttgcat acttttacta aaaaatcctg atattttatt gcttgatgaa ccaactaatc
     1321 atttagatgt atatatgaca agctttttgg aagaattgct aaaaaattca aagatgtgtg
     1381 tgatttttat ttcccatgat agatatttta ttgacgctat agcacacaag tgtgtagaag
     1441 tagagcaggg taagcttagt atttttaaag gcggatatgc aaactattta gagaaaaaaa
     1501 cacaaatttt gcaaagcctt gctaagagcc atgaaactct tttaaagcaa ttaaaaagcg
     1561 aagaagaatg gcttagaaga ggggttaaag caagacttaa aagaaatgaa ggacgaaaag
     1621 aacgcatttt taaaatgcgt gaagaagcga aaaaaaatcc tggggcaatc aaacgcttaa
     1681 aacttgaaat ttcaagagcg gctttaaatt ttaatagaga aaaaacgatc aatcgtaaaa
     1741 aaatgctttt tgagcttaaa aatataagca aaaatataaa caataaaaat ctttttaaag
     1801 atttttcaac gcgtatttta caaggtgaac gcatagctat cgtaggaaga aatggttgtg
     1861 gaaaatcaac attgttaaaa attcttctag ggcaaataaa acaagatagc ggtgaaataa
     1921 aacgcggaga gcttaagata ggatattttg atcaggctag aagcttggta aattctgata
     1981 aaagcttgct tgaaattttt tgtcccaatg gtggagatag ggttgaagtt cgtggtaaaa
     2041 atatgcatgt ttatggatat ttgaaaaatt ttctatttcc taaggaattt ttagataaaa
     2101 gcgtggctct tttaagtggc ggagagaaaa atcgcgttgc tttagccttg ctttttacta
     2161 aagaatatga tgttttgatt ttagatgagc caactaatga tcttgatata gctacgatta
     2221 atatattaga agaatactta cttagttttg aaggggctat tttgctagta tcacacgata
     2281 gatattttgt tgataaaatc gcaacaaaac tttatgcttt tgagggaaat ggatatataa
     2341 atattttaca cactctttat actgaatatc ttgaaaatga aaaagaaatt gaagaattgg
     2401 ataattttgc tttagagctt caaacccaag agcaaaataa taaccaaaaa gaaaaaagct
     2461 ccaaaaaatt gagctacaaa gaaaatgaga tattaaaaaa ccatcctgaa aaaatagatt
     2521 ttttagagca aaagatagct aaattaaatc aagatttatc cgatccaaat gtatatcaag
     2581 aaataggtat taacaagctt tatcaagagc ttgaagtaat gcaaaaagaa cttgaaattc
     2641 tagaaaatga gtatttttta gtattagaga aaagcgagaa tttataatta aagagatttt
     2701 atatttttta ttctatggag cgggaaacga gattcgaacc cgcgacccca accttggcaa
     2761 ggttgtgctc tacccctgag ctattcccgc aaaaaataag tggtgcccga ggtcggactc
     2821 gaaccgacac aaggttgccc ttaccagatt ttgagtctgg cgcgtctacc agtttcacca
     2881 ctcgggctca ttttataaga tttaaagcta aaattatact tttttaggct aaaaaatact
     2941 ttaaaaataa aaagtatttt caaaaagaca atataaaatt atataattta aatttttgga
     3001 acagttattg cttttgttta ttagcaatgt ttgaaaagat tttaacttta atactttaga
     3061 ggaaaaaaat gagaattaca aataaactta acttcacaaa tagtgtgaat aattctatgg
     3121 gcggtcaaag tgctttatat cagatatctc aacaacttgc ttcaggtttg aaaatacaaa
     3181 attcatatga agatgcaagc acttatatag ataatacgcg tcttgaatat gaaattaaaa
     3241 cattagaaca agtaaaagaa tcaacaagta gagctcaaga aatgactcaa aatagtatga
     3301 aagctttaca agatatggtt aaacttcttg aagattttaa agttaaagta acccaagctg
     3361 caagcgatag caattctcaa acctcaagag aagctatagc aaaagaacta gaacgtataa
     3421 aagaaagcat agttcagctt gcaaatacca gtgttaatgg tcagtatctt tttgcaggtt
     3481 ctcaagttgc aaacaaacct tttgattcta atggaaatta ttatggagat aaaaataata
     3541 ttaatgtagt aactggagct ggaactgaaa gcccatacaa tataccaggt tgggatttat
     3601 tttttaaagc agatggagac tataaaaaac aaataagcac taatgttagt tttacagata
     3661 atcgttggga tttaaataaa gaccctgata aaactaaata tctcacagga gattctaaat
     3721 ggcaacaact tatcggacaa ggttatgtaa aagataatag cttagatgct gacaaagact
     3781 ttgagtatga tgatagcaaa ctagattttc ctccaacaac tctttatgtt caaggtacaa
     3841 gacccgatgg aacaagtttt aaaagtgctg tactcgtcaa acccgaagat actttagaag
     3901 atgtaatgga aaatattgga gctctttatg gtaatactcc aaataataaa gtagtagaag
     3961 taagtatgaa tgatagtggt caaattcaaa ttacagatct aaagcaaggt aataataaac
     4021 tcgattttca tgctgtagct ttcacaccac aagctgatga taaaactgaa ttaaataata
     4081 ttatccaagc agcacaggat gaaggcatta caatggaaga tgttacaaac agggttatga
     4141 ctgctgcact aggaaatccc aataatggag atattacaaa tttaaataat cctgtaacca
     4201 ttcaaattaa cggacaaaac tttgaaattg atttaaaaca aactgatttt atcaaaagta
     4261 aaatgacaga tacagatgga aatgctgcta atggagctga ttacgataat gtgtattttg
     4321 aaaaaaatgg caatactgtt tatggtaatg tttctcaagt tatcaaagga agcaatgctt
     4381 atgccactga ttcaaccaaa cttagcgagg taatggcagg agatagccta aatggtacta
     4441 ctttaaattt aaaagtcaat tccaaaggtg gaaattctta cgatgttact ataaatttac
     4501 aaacttcaac tgtaagctat cctgatccta ataatccagg tcaaaccata agctttccta
     4561 ttatgcatac taatcctgca actggaaata gtggggttgt tacaggatca aatgatatta
     4621 cttatggtca aattaatgat attataggta tgtttgctgc agataaaatt cctacaacaa
     4681 ccatacaagc caataatagt caaattaata atgcagatta tacccaaata caacaactca
     4741 tgaaagattc acaagctact gttgatgtaa gtatggatta taaaggtcgt attagtgtta
     4801 ctgataaact ttcatcagga accaatatag aaatttctct tagtgattct caaagtggcc
     4861 aatttccagc acctcctttt accacaactt ctactgtaca aaatggtcca aattttagtt
     4921 ttagcgcgaa taattcttta actatagatg aaccaaatgt ggatattatt aaagatttag
     4981 attcaatgat tgatgctgtt ttaaaaggca atatgagagc agactccgaa agtgaaaacc
     5041 ctagaaatac aggtatgcaa ggagctttag aaagacttga tcatttagca gatcatgtta
     5101 gcaagcttaa tacaactatg ggagcatatc ataatactat cgaaggtgtt aatacacgca
     5161 catccttttt aagcgttaat gtccaaagta taaaatcaaa tgtgattgat gtagattatg
     5221 gtgaggcaat gatgaattta atgcaagttc aacttgcata tcaagcttcc cttaaagcta
     5281 gtacaacaat ttctcaactt agcttattaa attatatgta aaatttttta tggtataatt
     5341 tggctttgat tttattttca aggaaagaat attaaaaaag aagccatttt taccagctcc
     5401 acgcttgtta ttttttatct ttgtctttgt atgctagcac ctggcatggg agaatgggtt
     5461 tacaaggcta atttattttt atttggagaa tttgggtatt attatccatt ttctttgctt
     5521 atattaaatt atctctacta taaaaaaaaa tataaaatag aaaattttaa gcgtagggag
     5581 ctttttggtt tttctttggc ctttttttct accttgcttt tattttctgt cttttataga
     5641 gagtttgggt atattttaga aattgtatat ggattttttt ctataatctt agggcgtaca
     5701 gggagtggaa tttttgctct tttacttcta ctattttctt tggttttatt gtttccaaaa
     5761 tttgcaaaag aaattttaaa aatagaatta gattttactt atttattaaa agtagagcaa
     5821 gcttttaaat ctttacttat gcgtgtattt ggtggagaaa acgagaaaga agatgtaggt
     5881 aaatcagaac ctatagctcc aaaattaaat attttgcaag atagtattta tggaaattta
     5941 caaataaaca aaaaagggga aaccaataac ttagaacaga taattaaaga tagcaatatc
     6001 aatgcaagta aaaattcaat taccacggcc aaggaaaatt ttgaaaaact aaaaaatcaa
     6061 attttagatg aaaccataga gattgataaa caaagtttaa aagaatcaag aagttttgtt
     6121 catgagcatt ctcaacaagt gcgaaatttc gcacaaaagg ctagtaaaat gagcattagt
     6181 cttgatgaag attttaattt tatttcagaa gaagaggtag atatgattcc tgaacgtttt
     6241 ttaaaaccta aaaaacttga agatataaag caaatagata caaataaaaa tttagatgag
     6301 ccaagttata aacgtaaaaa tattgaaatt ccagtttcta atcaagaagt taaaccaaaa
     6361 atttttacaa aagagcttga acttagagag aatttgataa aaaaagaaaa actagaacaa
     6421 gaatacaaag cctatcaaaa tgaaatttta gaaaataaag taaaacaaga aattaaaaaa
     6481 ttagaagaat atgatgcgat aaattcaagc gatattatag aagggaataa atatagtttt
     6541 aatagcccaa aaacaattaa aacagaaaca gaagaatcag acaaaataaa tgaaaataaa
     6601 aatctagata aagcagacaa tatctttgaa tttgctccca ttgtagaaga gttaaatcat
     6661 ccttatatag aacctactcc tataaaaaat ataaatgaaa tagttataga agaaaaaaat
     6721 acactcgatt ttatccaaaa tacagaaact aaaatcgata atgaaaaaac aaatgatcaa
     6781 gaaattaaac ttcaaaaagc agttttagcc aaagaaattg ctattaacca agctttattg
     6841 cgtgaaatag agcagggcga agtagaaaaa ccaaaagatt tcaccttgcc gccattagat
     6901 tttttagcta atccaaaaga acacaaacaa gaaatcaatg aaagtgaaat agataaaaaa
     6961 atttataatc ttcttgaaaa attgcgtcgt tttaaaatag gcggcgatgt tataagcact
     7021 tatgttggtc ctgtggtaac tacttttgaa tttcgtccta gtgcagatgt gaaagtaagt
     7081 cgtattttaa atttacaaga tgatttaact atggctttaa tggcaaaatc aatccgtatt
     7141 caagctccaa taccaggaaa agatgttgta ggtatagaag ttccaaatga tgaaattcaa
     7201 accatttatt taagagaaat tttacaaagt gaagttttta aaaacgctaa aagtccttta
     7261 accatagctt taggtaaaga tatagtaggc aatgcttttg taaccgatct taaaaaactt
     7321 ccgcatttac tcatcgcagg aacgacaggt agtggtaaaa gtgtggggat aaattctatg
     7381 cttttaagtc ttttatatcg caactctcca aaaaccttgc gtttgatgat gatagatcct
     7441 aagatgcttg aatttagcat ttataatgac attcctcatc ttttaactcc tgttatcaca
     7501 gatccaaaaa aagcagtcaa tgcgctttca aatatggtag ctgaaatgga aagacgctat
     7561 cgcttaatgg ctgatgcaaa aaccaaaaat atagaaaatt acaatgaaaa aatgaaagaa
     7621 ttaggcggag aagaacttcc ttttattgta gtaattatcg atgaacttgc tgatttgatg
     7681 atgactgcgg gtaaagatgt agaattttat ataggaagac ttgcgcaaat ggcaagagca
     7741 agtggaatcc acttgattgt agctacacaa cgaccttctg ttgatgttgt aacaggacta
     7801 attaaagcga atttaccaag tagaatttct tataaagtag ggcaaaaaat tgactctaaa
     7861 gttattttag atgctatggg tgctgaaagt ttacttggaa gaggggattg tttatttact
     7921 cctcctggaa caagctctat agtgcgtttg catgcgcctt ttgcaagcga atttgaaata
     7981 gaaaaaatcg tggattttct aaaggatcaa caaagcgtag aatatgatga aagcttttta
     8041 aaggatcaac aaagcgtagg tgttacaaca aatgaaagct ttgatgggga agtagatgag
     8101 ctttacgaag aagctaaaag agtaatctta gaagatggaa aaacaagcat ttcttattta
     8161 caacgccgtt taaaaatcgg ctataaccgc tctgcaaata ttattgaaca acttacgcaa
     8221 aacgggattt taagcgaacc tgatgccaaa ggacaaaggg aaatcttgta agatttttct
     8281 tgtgtttttg atatataaaa ctgattacaa aagaagaaat ttaaaaggca aaagccccgt
     8341 aaaaagggct taaaaattat ttatctctaa gatttaattc agtaattaac ttactataag
     8401 aattataatc ttttctttta agataagata aaagtctttt tctttgacct acaagtttta
     8461 gaagtcctaa tcttgatgaa aagtcttttt tgtagatttt taaatgttct gtaagttctg
     8521 caattcttgc agttaaaaga gctacttgaa cttctgttga accagtatca cctggttttt
     8581 tagcgaattt cgcaactatt tctgcttttt tggccgaatc caaagccatg atagacctcc
     8641 tgattggtaa aataataaaa ttaaagaact gtaattttat cttaaaaagc aaaaaataaa
     8701 ctgaatttat cttttttaga aggttttgtc aaaatttaag tctttttcta agaattattt
     8761 attataatta cagctatttc tgtagttata acaaggagaa tctgtgctat ttaccaaagc
     8821 tagcgaatac gctttacttt ctttaattta tatttctcaa aaagaaacac ctcaagatgt
     8881 agattcttta gctttagagc ttgatattcc taaaagtttt ttagctaaaa ttttacaaac
     8941 tttagctaaa gatggcttgt taaaatcttt taaaggggca aaaggtggtt ttgttttaat
     9001 caaagaacca agtcaatata ctataaaaga aattgttaat agtgctgaaa aaaaggatat
     9061 cagtgtattt gaatgcagtg gtggcacttg tccaaataat aaagaagaaa attgcacctt
     9121 aatgcctatg ttagtaaatt tacaaaataa agtagatgaa tttttagatt ctattacttt
     9181 agaagatatt atgaaaaata atggcaaaaa ataaaatagt cgatttagtt tttcctttct
     9241 tggggccttt aatcgctcct gttttaaaag ctaaaagctt gactattgtt ggttttttag
     9301 tttgtatttt agctattatt atagttcctt taccaagtcc tattttggac tttttcttgg
     9361 ctttaagtat agctttatcg gtattaatta ttttaatttc tatttatata cccaaaccga
     9421 cagatttaac aacttttcca actttaatct tgattatcac tttatttagg ctttcattaa
     9481 atatagctac cacaaggatg attttaagcg aagggcaaaa cggccctgaa gctgtgagtg
     9541 agattatagc agcatttgga gaatttgttg ttggtggaaa tatggtcatt ggcgtgattg
     9601 tattttgtat tttagtattg attaatttca tggttgtaac aaaaggtagt acaagggttt
     9661 ctgaagtaca agcaagattt acacttgatg cgatgccggg taaacaaatg gctattgatg
     9721 cggatttaaa tgcaggactt attgatgaac aaaccgctag agcaagacgt caagaagtta
     9781 ttgctgaggc aaacttctat ggtgcaatgg atggttcttc taaatttatc aaaggagatg
     9841 ctgttgcagg aattatcata actattataa atatcatagg tggtttttta ataggatctt
     9901 ttcagcacga tatggcttta agcgatgctg cttctaccta tactatttta accataggtg
     9961 atggacttgt atctcaaatt ccagggctta ttacttctac tgcaaccgct ataattatca
    10021 ctcgtgcaag caaagatgag gaaaattttg cagaaggaac tttaactcaa cttttaagcg
    10081 aatatcgcac gcttttaata gtaggttttg tactttttat ctttgcgtta gtgcctggtt
    10141 tgccaacttt atccttgggc tttatggctt tagtattttt aagccttggc tatcttacca
    10201 agcaggttaa ggaaggtaaa attgatataa ctacagttaa aaaaagcaaa ccaagtgccg
    10261 cagctgcatc tcaaagtgga gcaggtggga caacggcaac gcctgctaag aaaagcgaag
    10321 aagaaattct caaagaagaa gagcacaaga ttaacgatat actcaaagtt gaaattttag
    10381 aacttgaact tggatacgga cttattaagc ttgctgaaaa cgaacttaca gaaagaattc
    10441 gctcaatgag aagaagtatt gctgaaagtt taggattttt aatgccaaaa ataagaataa
    10501 gagataattt aagacttaaa ccaaatgagt atagttttaa actcaagggc gtgtctatag
    10561 caagtgctga aatttatccg gataaatatt tagccatgga tagtggtttt atcacagaag
    10621 agatagaagg gattgctaca aaagaacccg cttttaactc tgatgcactt tggattgatg
    10681 cgaatttaaa agatgaagca acattaaatg gctatatagt aatagatcct gcaagtgtta
    10741 tttcaacaca tatgagcgaa cttatcaaag cgcacgcaag cgaacttctc acacgccaag
    10801 aggtacaaaa tcttcttgat aaggttaaaa atgattatcc aatcatcgta gaaggtgctt
    10861 taggtgtcgc acctgtaagt cttattcaaa aaattctcaa agacttgctt aagcatcaca
    10921 taccaattaa agatatgctt actattttag aatctgtaag tgatatagca gaagtaagca
    10981 agagttttga tatgattatt gaacatgtaa gggcgtcctt agctaggatg attacaaata
    11041 tgtatttaga tgataaagga aatttggata tttttatctt agactctgct agttctgcgg
    11101 ttttaatgga aaatgtacaa tttagagatg gaagttatca cttgccttta agtgtggctc
    11161 aaacaggcac tttagtagat actctaaggg ctgaagttgc cgcggtagca aatggtcgta
    11221 tcaagccttt tatactttgc gttgaaccgc agcttagaaa attcattgct gatatttgtt
    11281 ataattttag cattaatata gtagtgttaa gttttgcaga aattgcagaa aatacaaatt
    11341 ttaataccga gggtattatt agga
//
LOCUS       DARGEY010000042        11346 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.042, whole genome shotgun sequence.
ACCESSION   DARGEY010000042 DARGEY010000000
VERSION     DARGEY010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11346
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.042"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            38..805
                     /locus_tag="SF008_000970"
     CDS             38..805
                     /locus_tag="SF008_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HEG8233247.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDETLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNAKALEFVKKIKENLKKEQIQICALENFI"
     gene            815..1555
                     /gene="pxpB"
                     /locus_tag="SF008_000971"
     CDS             815..1555
                     /gene="pxpB"
                     /locus_tag="SF008_000971"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HEG8233248.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEI
                     YGIDELVSAYASLLIYFNPCVLSLNSLLDFLEKIKKDIKLAEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFEIQEQVAKKVYQKEIYEYKNH"
     gene            1536..2501
                     /locus_tag="SF008_000972"
     CDS             1536..2501
                     /locus_tag="SF008_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HEG8233249.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGIELCLKGGKYEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILE
                     LDLAKIGFRGYLCVAGGFEVKSFLNSKSSDAKMGAGVFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSPKEPIIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAE
                     SSESIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(2498..3394)
                     /locus_tag="SF008_000973"
     CDS             complement(2498..3394)
                     /locus_tag="SF008_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEG8233250.1"
                     /translation="MTRTKYLYILLVIAMFLWGSSWPTSKILANYTDTSIITFWRFFF
                     VVLGSFFVLNFLKIPLKIEKTALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTT
                     MIPIFSYLIFMIAIFFQKNKKSTHKITKSEILGLFLGLLSGFCLLNLGSLEDLFGKFN
                     ILFLTCSFIWALMAVFNHKAKGAHPLAINFYINLISILMFSWILFDVKSYEIFHFEFK
                     FWISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNAL
                     TLLGCALAIGAIYFINIYGKKA"
     gene            complement(3427..4005)
                     /locus_tag="SF008_000974"
     CDS             complement(3427..4005)
                     /locus_tag="SF008_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG8233251.1"
                     /translation="MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHI
                     DQGYDPKEEIQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHE
                     NPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGM
                     KALPTFMCNDVVKNPQVEKYLNEYELHLKKIF"
     gene            4105..4446
                     /locus_tag="SF008_000975"
     CDS             4105..4446
                     /locus_tag="SF008_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002921808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8233252.1"
                     /translation="MTKENSPCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYNLSKRGQSLIPILQAMCK
                     WGEKDKKEKNA"
     gene            4439..4888
                     /locus_tag="SF008_000976"
     CDS             4439..4888
                     /locus_tag="SF008_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HEG8233253.1"
                     /translation="MLELIGELSLQNYMGEWLEMARKPAFFQKSCLNSKAKYELKYKN
                     GVPYVEIENFCSKENENSSIKGKAKIVSNRQLAVRFNIFMNLFNKVNYEIIFIDSEYK
                     VAIVGSPDKKYLWILARNIIDEKSIKELLNIAKQRGFDISDVVFDKY"
     gene            complement(4890..5966)
                     /locus_tag="SF008_000977"
     CDS             complement(4890..5966)
                     /locus_tag="SF008_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HEG8233254.1"
                     /translation="MQYKILENNRIASKGYAMLSKDAKFTPFEFSRHAIGDNDILIKI
                     LYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNS
                     CGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAVCVPKDA
                     PMEKVAPLLCAGITTYSPLKFSKIKEGSSVAIAGFGGLGMMAVKYAVKMGAKVSVFAR
                     NENKKADALAMGVSSFYTSCDKNAVKERFDLIISTIPTPYNPAIYLDLLKFGGEMAIV
                     GLPPHEVAPSISVITFVHKAGKKVYGSLIGGIAETQEMLDFSLKHGIYPETELITPQE
                     IDKAYENLTSGKAKFRYVIDMTKE"
     gene            6096..8405
                     /locus_tag="SF008_000978"
     CDS             6096..8405
                     /locus_tag="SF008_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEG8233255.1"
                     /translation="MQNLYSEDDTRVKFIDAKLYDSSWNEENIKRNYYFTDGRKLLGG
                     KRAQRKFADYLLRYEGNNLAIIEAKKFSKDPLDGLSQGIEYAKILNVPFVYSSNGEKI
                     YEYDIRSHSGKYIDKFPSPKELFDRIYGNVKEWQYRLLTQNVMYIPQKELRYYQKIAI
                     DKVIEAIINNKNRILLTLATGTGKTTIAFNLCYRLLEARWNKENKDQKPKILFLCDRV
                     SLRDQALGEFNPIESDCKAISAEEIKKNDGKIITNANIFFGIYQSLAANSKEQENTQE
                     EQESKFYLQYPKDFFDLIIIDECHRGGANEEGSWRAVLEYFSYATQLGLTATPKKEEN
                     IDTYEYFGESVYDYSLKSGIEDGFLTPYKVKLIKTTLSDGYTYNPDDLIQGELEKGFY
                     KQSEFERNIFLPNYNDFIAKKILELINPMDKTIIFCVNQAHANEVKRAIDKYKSVKRD
                     DYCVRVTSDEGKIGLDYLKLFQDNDKSYPVILTSSKMLTTGVDAKNVRNIVLLANIGS
                     MVEFKQIIGRGTRVYEGKDFFAILDFVGATKLFYDPKWDGEKIEELKEQDEKEKITKE
                     HIKQTKEESKEKKSVTIHLKGTKLKVLDITTTYVGAQGKPLSTKEFLEFLIGKLGEYY
                     DDEAKLREIWSDQKNRERFLKALANDGVDEDALKDLREIFQKDCDIYDVLAHLSFNAE
                     IKTRQERVLQVENGEFLKRFQKEKAIKFIEFLLNRYQEYGIKDFDDGLKPLIELSSLG
                     NVRELADEFGSLEILKQSFDDLQREIYLN"
     gene            8417..10084
                     /locus_tag="SF008_000979"
     CDS             8417..10084
                     /locus_tag="SF008_000979"
                     /inference="COORDINATES: protein
                     motif:HMM:NF015210.1,HMM:NF019151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HEG8233256.1"
                     /translation="MSNSFLNTETLTLNDLFGKDRTYSVPKYQRNYSWSEDQWEDLWC
                     DIEDLEKSNYPHFMGSIVLQETKDAKNIDIIDGQQRLTTLSIFMSAIIFYIDNLVKKD
                     KDKTDNEKRKEIFNKKYLGYESSTTLKIVPKLTLNNTNNNFFTHYIINQNIPDKPTLA
                     DEDNSNYLLYKAFNFFQKKIKEKFQEEDGKIIAEYVEMIGEQLKFIVIIVQNELDAYV
                     LFQTLNARGVELTAADLLKNYFLNLLKNEPEILNQANLMWENINNKISTEKIPDFLRS
                     VINSQIDLVTKNRLFKEVKKNIKTSEEAFNFISKLHKLSSLYLALQNSNHSSWNDFTA
                     QDAKYYIDILELLRFKSSLPLLLIAKEKIVDDQDFIKILKACAILSIRYSISKTRTNK
                     LESSYNKIACNIFHSKYKNTKEIIDALKSIDIDDNDFKKSFSIYSKKATSGNDAKIVK
                     FLLVNIERHLSGGICDEQIATIEHILPSSLNNEKVHKLGNYILLEKKYNQELKDKKFE
                     EKISIYNKSSFKLPRYIADNFKTWDTKSIDQYQNFLAKQALALWKIQ"
     gene            10081..11277
                     /locus_tag="SF008_000980"
     CDS             10081..11277
                     /locus_tag="SF008_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG8233257.1"
                     /translation="MTNLPQGWEVKKLEEIANIKGGKRLPKGENLLDNNTKFAYIRVA
                     DFQDNGTINLQNIKFINENTYNVLKNYKIYDDNLYISIAGTIGKSGIIPKELNGAILT
                     ENAVKLEYIQNNISNKFMYFFTLSNIFKTQIQTSTKIVAQPKLAITRLKQIQIPLPPL
                     KEQERIVGILDESFAKIDESIKILEQDLLNLDELMQSALQKAFNPLKDNAKENYKLPQ
                     SWEWKSLEEISENISAGGDKPKNCTESKTAKNQIPVYANGVNNNGLVGYTDKATIIKP
                     SLTISARGTIGFVCIRKEPYFPIVRLISLIPCENILCLHYLYFCLNFFIAKGEGSSIP
                     QLTIPKFKSLQIPLPPLKEQEQIAEHLDFVFEKAKALKELYTKELKDYEELKQSLLDK
                     AFKGEL"
BASE COUNT         4362 a         1569 c         1858 g         3557 t
ORIGIN      
        1 ataataaaat caataattaa atatacaagg tcaaataatg ttcaaagtgg atttaaatag
       61 tgatttaggg gaaagttttg gcgcctataa aatgggaatg gatgaagaaa ttttaaaatt
      121 tgtaagttca gtaaatgtcg cttgtggctt tcatgcgggt gatccttgtg tgatggatga
      181 aaccttaaat ttagccaagc aaaatggtgt ttgcatagga gcacatccat cttatcctga
      241 tcttttgggt tttggaagac gcaatatgca aataagcttt gaagaggcta aaaactatgc
      301 cttgtatcaa ctaggagctt tatttggctt tgctaaggca aaaggtatga aaatacagca
      361 ttttaaagcc catggggcgc tttataatat ggcagctatt gatgaaaatt tagccttagc
      421 actttgtgag gcagtggcga gttttgatga aaatattatt tttctagggc ttagtaattc
      481 tgctatgaat gaagcagcta agaaaaaggg tttaagatat gctaatgaag tttttgcaga
      541 tcgtgcctat aatgatgatg gcactttagt ttcaagaaaa ttagaagggg cgttaataca
      601 cgatgaaaat ttagctatca aacgcgtgat aaaaatgata aaagaaagca aagttacaag
      661 cataaatggc aaagaaattg atttaaaagc cgatagtatt tgtgttcatg gggataatgc
      721 aaaagcttta gaatttgtta aaaaaatcaa agaaaattta aaaaaagagc aaattcaaat
      781 ttgtgctttg gaaaatttta tataagtttt agcaatgttt agtgtgcatt ttagtggaag
      841 taaagctttg cttttgcgtt ttgagcaaga aatttcacct caaatcaatg cctatgtttt
      901 aagcacagaa caaaggatac aaaaagccct aaaagaaggt gaaatttatg ggattgatga
      961 gttggtaagt gcttatgcaa gcttgcttat atattttaat ccttgcgtgc tttctttaaa
     1021 ttccttgctt gattttttgg aaaaaattaa aaaggatatt aaacttgcag aacaaaactc
     1081 aagtctttgt atagaagttc cactttgtta tgatgaagaa tttggactgg atttagaatt
     1141 tgtgtgcaaa cacaatcaaa tttcaaaaga agagcttata tctcttcaca ctaaacctta
     1201 ttatcttgtt tttatgctag gttttatggc aggttttcct tatcttggag gtttagatga
     1261 aagacttttt accccacgcc tttcaagccc tagagcaaaa atagaagctg gaagtgtagg
     1321 tatagccgat aaacaaacag gagtttatcc catatcaagt ccagggggtt ggcaaatcat
     1381 tgctagaaca cctttggaat tttttgataa agaagatgaa aaaaatccca ctcttttaaa
     1441 agcgggtatg tttttaaaat ttaaagccat ttcaaaagat gaattttttg agatccaaga
     1501 gcaagttgct aaaaaagtct atcaaaagga aatttatgag tataaaaatc attgaagcat
     1561 ctataaattc aagtttgcaa gactttggta gaaaaaaatt tgctaaattt ggcatagcaa
     1621 gaagtggagc tatggatgaa gatgctttaa gaatggcaaa tatcttgctt ggaaacaaac
     1681 aagatgaagc aggaattgag ctttgtttaa agggtggaaa atacgaattt ttagatgaga
     1741 attattttgt tttaagtgga gctgaatttg aggcaaagct tgataatcaa aaaatcaaaa
     1801 cttgcaaagt atatcaagca aataaaggcg atattttaga acttgattta gcaaaaatag
     1861 gttttcgtgg gtatttatgc gtagcgggtg gctttgaagt aaaaagtttt ttaaactcta
     1921 aatccagtga tgctaaaatg ggagctggag tttttgaagg aagagctttg caaaaagatg
     1981 atattttaaa tactcataat acttttatac cttttaattt agaagctaga gaatgtgaaa
     2041 atcctctttt taaaagccct aaagaaccta ttatacgcgt tattttagga acaaatgaag
     2101 atgcttttac ccaaaaaggc atagaaacct ttttaaatac tacttataaa gtaggtttaa
     2161 aaagcgatag aatggcaatt tatgcagaat ctagtgaaag tatagagcat aaaaactcag
     2221 cagatatcat ctcagatcct gcggtttttg gaagtataca agtgccaaaa agtggtattc
     2281 ctatcatttt aatggcagga agacaaagca caggaggcta tacaaaaata gccacggtta
     2341 tagaaaatga tctaagctta ctcgcacaag ctaagttagg ttctagcttt aaatttcaaa
     2401 gcattagcat gcaagaagcc ttagaacttt ataaacaaag agaaatgaaa tttaaagcta
     2461 tggatcaaaa aatcaatctt gattttgaaa atttaatcta agctttttta ccataaatat
     2521 tgataaaata tatagcacct atagccaagg cacaacctaa caaggtaagt gcatttggca
     2581 cctcgtctag tataaaataa ctgcaaatta aagcactagc aggagtgatt aaaacaaaag
     2641 aatttgcctt aacgcttcct aaaatgtgaa tcccataata ataaatacta gttcctataa
     2701 tagttgataa aaaagccacg acaaacatac tgatccaaaa tttaaattca aaatgaaaaa
     2761 tttcataact ttttacatca aacaatatcc aagaaaacat taaaatagaa atgagattaa
     2821 tataaaagtt aatcgccaaa gggtgagctc ctttggcttt atgattaaac actgccatca
     2881 aagcccaaat aaaagaacaa gttaaaaata aaatattaaa tttaccaaat aaatcttcta
     2941 aactccctaa atttagcaaa caaaatccag ataataaacc taaaaataag cctagaattt
     3001 cactctttgt gatcttgtga gttgattttt tgtttttttg aaaaaatatc gctatcataa
     3061 atatcaaata agaaaaaata ggaatcatag tggttactaa aactcctcct ttgcctgcca
     3121 agccgtgctt tatagcgata aaaaatacaa aggcataaag cccatttaaa actcctgcta
     3181 tcaataccca ttttaaggca gttttttcga ttttaagagg aatttttaag aagtttaaaa
     3241 caaaaaatga acccaataca acaaagaaaa aacgccaaaa ggtaataata gaagtatccg
     3301 tataatttgc taaaatctta gatgttggcc aagatgagcc ccataaaaac atagcaataa
     3361 caagcaagat atacaaatac tttgttcgag tcaatgttac accttgaaat ttttaagtca
     3421 aattttttaa aaaatttttt tcaagtgtag ttcatactcg tttagatatt tttccacttg
     3481 aggatttttt accacatcat tacacataaa agttggtaaa gctttcatac ctataaattc
     3541 atgagcctta tgcaaatgcc aatacaccat atctacaccc tttccttcaa aaaattcatt
     3601 tttatcatta aaggcttcaa gaggtgcatt ccaagtgaga gaaaacatgt attttttacc
     3661 atgatctaaa ccaccttttc cgtagttttt actaggattt tcatgagttc ttccatcatt
     3721 tttaaaaagc actccagcac ccaaaccaaa cacttcatcg atatattttt taactatcca
     3781 aggctccccc atccaccaag ctggcatttg atagatcaca gcatcagctt ttataaattt
     3841 ttgtatctct tctttaggat catatccttg atctatgtga gtttgatcta cctcgtatcc
     3901 tagtgttttt aaaatttcta aagcatgatt atgcaatgtc aaattaagtt gtccttttga
     3961 atttccaaat tctttagcgc cattaagtaa gagtatattt ttcattttta tcctttttta
     4021 aattttatga tacaattata acttagcata atatcatttt caatacagaa aataaagtaa
     4081 tatactatac taaaggaatg ttaaatgact aaagagaatt ctccgtgcaa tttcgaagaa
     4141 tgtggattta actatactct agcattaatt aatggaaaat ataaaatgag tattttatac
     4201 tgcttatttc gctatgaaat cgtgcgttat aatgaactca aacgcttttt aagctccata
     4261 tcttttaaaa ctttaaccaa taccttaaga gaactagaaa acgatggttt aattatcaga
     4321 aaagaatacg ctcaaattcc acccaaggta gaatataact tatccaaacg cggacaaagt
     4381 ttaattccta ttttacaagc tatgtgcaaa tggggcgaga aagacaaaaa ggaaaaaaat
     4441 gcttgaatta attggcgaac tttctttgca aaattatatg ggagaatggc ttgaaatggc
     4501 tagaaaacca gccttttttc aaaaatcttg cctaaattca aaggcaaaat acgagcttaa
     4561 atacaaaaat ggcgttcctt atgtagagat tgagaatttt tgcagtaaag aaaatgaaaa
     4621 ttcaagtata aaaggcaagg caaaaatcgt ttcaaatagg caattagcag tgagatttaa
     4681 catctttatg aacctgttta ataaggtaaa ttatgaaatt atttttattg atagcgagta
     4741 taaagttgcc attgtgggta gtcctgataa aaaatacctt tggattttag caagaaatat
     4801 aattgatgaa aaaagcataa aagagctttt aaacatcgct aagcaaaggg gatttgacat
     4861 tagcgatgta gtttttgata agtattaaat tattcttttg tcatatcaat aacatagcga
     4921 aatttagcct tacctgaggt tagattttca taagctttat caatttcttg cggtgtgata
     4981 agctcggttt ctggataaat tccgtgtttt aaagaaaaat caagcatttc ttgagtttca
     5041 gcaataccac caattagcga accataaacc tttttacctg ccttatgtac aaaggttatc
     5101 acgctgatac ttggagcaac ttcgtggggt ggcaaaccca ctatcgccat ttcaccgcca
     5161 aatttaagca aatccaaata aatagcagga ttataaggcg ttggaatggt tgagatgatt
     5221 aaatcaaaac gttcttttac agcgttttta tcgcagcttg tgtaaaatga gcttacaccc
     5281 atagccaaag catcggcttt tttgttttca tttctagcaa aaacgctaac ctttgcaccc
     5341 attttcacag cgtattttac agccatcata ccaagtccgc caaatcctgc tatagcaacg
     5401 cttgagcctt cttttatctt agaaaatttt aaaggcgagt aagtggtaat tcctgcacaa
     5461 agcaaaggcg cgactttttc catcggtgca tcttttggca cacaaacggc aaatttttca
     5521 cttacaacta tgttgtttga gtagccccca taagtgtttt cattgccatg aaatacatca
     5581 caactattgt aagtaaagat ggttttgcca ttttcgcaaa actgctcttg tgagcgtttg
     5641 caagcatcgc actcaccgca tgaatttacc atacaaccaa cccctgcgta atctcctact
     5701 ttaaatttac tcacattttt acccacagcg ataacttctc ctgctatctc atgcccaggc
     5761 acgcaaggat aagtagcttc tccccactcg cttcttgcgg tgtgaatatc gctatgacaa
     5821 atgcctgcat ataggatttt aatcaaaata tcattatcgc caatagcatg gcggctaaat
     5881 tcaaagggtg taaatttcgc atccttgcta agcattgcat agcctttact tgcgatgcga
     5941 ttgttttcta aaattttgta ttgcattttt gctccttttt tgatttttta taattataaa
     6001 acattagagt agctataagt caagagtgaa aataattttt taaaaattag tataaatgct
     6061 ataattataa aatttaattt cactttgggg taaaaatgca aaatttgtat tcagaagatg
     6121 atactagagt aaaatttata gatgcaaagc tttatgatag ttcttggaat gaagaaaata
     6181 taaaaagaaa ttattatttt acagatggta gaaagctttt aggtggtaaa agagcacaaa
     6241 gaaaatttgc agattatttg cttagatatg aaggaaacaa ccttgctata atagaagcta
     6301 aaaaatttag taaagatcct ttagatggtt tatctcaagg catagaatat gcaaaaattt
     6361 taaatgtgcc ttttgtatat agtagcaatg gagaaaaaat ttatgaatac gatataagaa
     6421 gtcatagtgg taaatacata gataaatttc caagtcctaa agagcttttt gataggattt
     6481 atggcaatgt caaagaatgg caatacaggc ttttaaccca aaatgttatg tatataccgc
     6541 aaaaagaatt aagatattat caaaaaatag caatagataa agtcatagaa gccattataa
     6601 ataacaaaaa tagaatttta ctcactcttg ctacaggcac aggaaaaaca accatagctt
     6661 ttaatttgtg ctatcgtttg ttagaggcaa gatggaataa agaaaacaaa gatcaaaagc
     6721 ctaaaatact atttttatgt gatagagtga gcttaagaga tcaagcctta ggagaattta
     6781 atcctataga aagtgattgt aaggcaatta gtgctgaaga aataaagaaa aatgatggaa
     6841 aaatcataac aaatgcaaat attttctttg gaatttatca aagcttagct gcaaattcaa
     6901 aagaacaaga aaacacccaa gaagaacaag agagcaaatt ttatcttcaa tacccaaaag
     6961 atttttttga tcttatcatc atagatgagt gccacagagg tggagcaaac gaagaaggaa
     7021 gctggagagc tgtacttgag tatttttctt atgcgactca gcttggttta accgctactc
     7081 caaaaaaaga agaaaatata gacacttatg agtattttgg tgagagtgtt tatgattata
     7141 gtcttaaaag tggtattgaa gatggatttt taacccctta taaagtcaaa ctcataaaaa
     7201 caactttgag tgatggttat acctataatc ctgatgattt aatacaaggt gagcttgaaa
     7261 aaggctttta taaacaaagt gaatttgaaa gaaatatttt tttaccaaac tataatgact
     7321 ttatcgctaa gaaaatttta gagcttataa atcctatgga taaaaccata attttttgtg
     7381 taaatcaagc tcatgcaaat gaagtaaaaa gagctataga taaatataaa agcgttaaaa
     7441 gagatgatta ttgtgtaaga gttacgagtg atgaaggtaa aatagggctt gattatctaa
     7501 aattgtttca agataatgat aaaagctatc ctgtcatact tactagctct aaaatgctca
     7561 caactggagt ggatgcaaaa aatgtgcgaa atatagtatt gctagcaaat ataggttcta
     7621 tggtggaatt taagcaaatc atcgggcgtg gcactagggt ttatgaaggt aaagactttt
     7681 ttgctatact tgattttgtc ggtgcgacta aactttttta tgatccaaaa tgggatggtg
     7741 aaaaaataga agaattaaaa gagcaagatg aaaaagaaaa aatcactaaa gagcatataa
     7801 aacaaacaaa agaagaaagc aaagaaaaaa agagcgtaac catacactta aaaggcacaa
     7861 aacttaaggt tttagatatc acaactactt atgtaggagc acaaggtaag ccacttagca
     7921 ctaaagaatt tttagaattt ttgataggaa agcttggtga gtattatgat gatgaagcaa
     7981 aattgcgtga aatttggagt gatcaaaaaa atagagaaag atttttaaaa gcccttgcaa
     8041 atgatggagt tgatgaagat gctttaaaag atctaagaga aatttttcaa aaagattgtg
     8101 atatatacga tgttttagcg catttaagct ttaatgccga gataaaaaca aggcaagagc
     8161 gtgttttaca agtagaaaat ggtgagtttt tgaaacgctt tcaaaaagaa aaagctataa
     8221 aatttataga atttttacta aatagatatc aagaatacgg cataaaagat tttgatgatg
     8281 gtttaaaacc acttatagag cttagttctt taggtaatgt aagagaattg gctgatgaat
     8341 ttggtagctt agaaattcta aaacaaagtt ttgatgattt acaaagggag atttatttaa
     8401 actgaaagga gagaaaatga gtaatagttt tttaaataca gagactttaa ctcttaatga
     8461 tttatttggt aaagatagaa cttatagtgt tccaaaatat caaagaaatt attcttggag
     8521 tgaagatcaa tgggaagatt tatggtgtga tattgaagat ttagaaaaat caaactatcc
     8581 acattttatg ggttctatag tattgcaaga gactaaagat gccaaaaata tagatataat
     8641 tgatgggcaa caaagattaa ctaccttaag tatttttatg tccgcgataa tattttatat
     8701 agataatttg gtcaaaaaag ataaagataa aacagataat gaaaaaagga aagaaatttt
     8761 taataaaaaa tatttaggtt atgaaagttc tactacatta aaaatagttc caaaacttac
     8821 tttaaataat actaataata atttttttac tcactatatt attaatcaga atattccaga
     8881 taaaccaact ctagcagatg aggataattc taattattta ttatataaag catttaattt
     8941 ttttcaaaaa aaaattaaag aaaaatttca agaagaagat gggaaaataa ttgcagaata
     9001 tgtggagatg ataggagaac aattaaagtt tattgtgatt atagttcaaa atgaattaga
     9061 tgcttatgtt ttatttcaaa cactaaatgc tagaggagta gaattaacag ccgctgattt
     9121 attaaaaaat tactttttaa atttacttaa aaatgaacca gaaattttaa atcaagctaa
     9181 tttaatgtgg gaaaacataa ataataaaat ttcaacagaa aaaatacccg attttctaag
     9241 aagtgttata aattcacaaa tagatttggt tacaaaaaat agacttttta aagaagttaa
     9301 aaaaaatatt aagacttcag aagaggcttt taattttata tctaaacttc ataaattatc
     9361 ttctttgtat cttgctttgc aaaattcaaa tcatagttct tggaatgatt ttacagcaca
     9421 agatgcaaaa tattatattg atattttaga gttattaaga tttaaatcat ctttaccatt
     9481 actgctaatt gctaaagaaa aaatagtaga tgatcaagat tttataaaaa ttttaaaagc
     9541 ttgtgctata ttatctatta gatattctat ttcaaaaact agaacaaata aattggaatc
     9601 tagctataat aaaattgctt gcaatatatt tcatagcaaa tataaaaata ccaaggaaat
     9661 tatagatgca ttaaaatcaa ttgatattga tgataatgac tttaaaaaat ctttctctat
     9721 atattctaaa aaagcaacct caggaaatga tgcaaaaata gtcaaatttt tacttgttaa
     9781 tattgaaagg catttatctg gaggcatatg tgatgaacaa attgcaacaa tagagcatat
     9841 acttccatca tctttaaata acgaaaaagt tcataaatta ggaaactata ttttattaga
     9901 aaaaaaatac aatcaagaat taaaagataa aaaattcgaa gaaaaaattt ctatatataa
     9961 caagtctagc tttaaactac caagatatat agcggataat tttaaaactt gggacacaaa
    10021 aagtattgat caatatcaaa attttttagc taaacaagcc ttggctctat ggaaaataca
    10081 atgacaaatt taccacaggg ttgggaagtt aaaaagcttg aagaaattgc aaatatcaaa
    10141 ggaggtaaaa gacttcccaa gggtgaaaat ttattagaca ataatacaaa atttgcttat
    10201 ataagagttg cggattttca ggacaatggg actataaatt tacaaaatat taaatttatc
    10261 aatgaaaaca cttacaatgt tttaaaaaat tataaaattt atgatgataa tctatatatt
    10321 agcattgctg gaactattgg aaaaagcggt attatcccca aagaattaaa cggagctatt
    10381 ctaacagaaa atgctgtaaa gctagaatat attcaaaaca atatttccaa taaatttatg
    10441 tattttttta cattatcaaa tatatttaaa acacaaatac aaacttctac aaaaatagtt
    10501 gctcaaccaa aattggcaat tacaagatta aaacaaattc aaatcccact accgccgctc
    10561 aaagagcaag aaaggatagt gggaatttta gatgagagtt ttgcaaagat agatgagagt
    10621 attaaaattt tagagcaaga tttgctaaat ttagatgagt taatgcaaag cgccttgcaa
    10681 aaagctttca atccattaaa agacaatgct aaagaaaact ataaactccc acaatcttgg
    10741 gaatggaaaa gcttagaaga gattagcgaa aatatttctg cgggtggaga taagccaaaa
    10801 aactgcacag aaagtaaaac tgccaaaaat caaatccctg tttatgcaaa tggtgtaaat
    10861 aataatggtt tagttggata tacagataaa gctaccatta taaaaccttc tttaactata
    10921 tctgctagag gaacaatagg ttttgtttgc attagaaaag aaccttattt tcctattgta
    10981 aggcttattt ctttaattcc ttgtgaaaat atattatgct tacattattt atatttttgt
    11041 ttgaattttt ttatagcaaa aggtgaaggt tctagtattc cgcaacttac tataccaaaa
    11101 tttaaatccc tacaaatccc cctaccccca ctcaaagagc aagagcaaat cgcagagcat
    11161 ttagattttg tctttgaaaa ggcaaaggct ttaaaagagc tttacactaa agaactaaaa
    11221 gattatgaag agcttaagca atccttactt gataaagctt ttaagggaga attataatgt
    11281 taaaaaattt gccaaatttt aacacattgg cttgatatgt taaaaatttt tgattttttt
    11341 aacata
//
LOCUS       DARGEY010000043        11182 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.043, whole genome shotgun sequence.
ACCESSION   DARGEY010000043 DARGEY010000000
VERSION     DARGEY010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11182)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11182)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11182
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.043"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1929
                     /locus_tag="SF008_000981"
     CDS             <1..1929
                     /locus_tag="SF008_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEG8233258.1"
                     /translation="LNKDFLDEYEAIVYDLQGFLSKFEENLLSEISQIKEVVLSFKTS
                     KFNLEYLLKLDFLKIFDLKINTHYEINLSKQEILKEEIFKTKNSKMKLKSFELRALQC
                     AFVMDEISHFVRKGLKPENIAVITPDESFCEFLRLFDKDNMLNFASGISIKESLFYQK
                     FQALYESASSASFVYKNQEDYFEDTQMIFDYHNTLLHSLKLDFIEFKKYFDEKCDFKY
                     FEKLLALFLENEKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSLSDVG
                     GGKVTVMGLLESRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRREN
                     LQRFYYESLMKNALEVSICFVENEEKSKSRFLDELDFDFFYETHIHQKAYLNALKLDY
                     EGIKPNLTPIKAPILKHNPFEFPLSCSRFNLLENQKRTYYYRYILNLAEPRVLSEESK
                     AKNQGNFIHKMLEIYYKNYSNNDFDIKVFANLLNKEYQKYNISELDLEVFKLKFIQFA
                     KNEKEHFSKGFYVAHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNLIIDYKSGKVP
                     SNSYQLAFYQALYDENASVGFYDLNSMQILHQKAKSLDELRERLKDLVLMSKEEIEFE
                     NEQDEYCPYKLIYKKELK"
     gene            1926..4691
                     /locus_tag="SF008_000982"
     CDS             1926..4691
                     /locus_tag="SF008_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HEG8233259.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDAKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNRPKILNPTKAYINKAYSELRSYCLGLTHVKNYKNLCD
                     NFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAKRMELINALNTYAIELENY
                     KIANLMNLLNHYSEAKNIFHKDKNTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHL
                     LIDEFQDTSVIQYQILRPLIAELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     LKQEFSQIKSDNLNTNYRSKELLVDFVNETFKEKIKDYKEQFALESKKGGFVRIVESK
                     EQKVKNQAQEIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLREQNI
                     PAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKITLDFSKNAME
                     NVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCALKIVSEQNMGISIMSVHK
                     SKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKEPIYTLFKEN
                     ITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQERGFLE
                     SKEQILSVKKESIQTLQKFEKITLQEIQSEERLDSKELYFGNAFHFFMQNLKLPKGEN
                     FQILTQRCKSKFRHFLDESDFEKLFKRIEILLKNIQFQNLIGDGKLLKEQALSFNGEI
                     KQLDLLALKDEEAFIIDYKTGLAMQDKHKEQVGTYKIAISEILQKDKVRAFIVYCLEN
                     EIQILEI"
     gene            4775..5200
                     /gene="rplM"
                     /locus_tag="SF008_000983"
     CDS             4775..5200
                     /gene="rplM"
                     /locus_tag="SF008_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEG8233260.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            5203..5592
                     /gene="rpsI"
                     /locus_tag="SF008_000984"
     CDS             5203..5592
                     /gene="rpsI"
                     /locus_tag="SF008_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEG8233261.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGFDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            5717..6676
                     /gene="cadF"
                     /locus_tag="SF008_000985"
     CDS             5717..6676
                     /gene="cadF"
                     /locus_tag="SF008_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HEG8233262.1"
                     /translation="MKKIFLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRATPQAKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            6676..7317
                     /locus_tag="SF008_000986"
     CDS             6676..7317
                     /locus_tag="SF008_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG8233263.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLAYREIYAQIYLEQTTLLPKAKEALELGSEIADL
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITLEDVTNPKPSSEPIILALKRLNKTQENAY
                     MIGDTILDIQAAISANITPLALTCGYGNENELKAHSIVFLNAYEAVNYIARLN"
     gene            7410..10970
                     /gene="nifJ"
                     /locus_tag="SF008_000987"
     CDS             7410..10970
                     /gene="nifJ"
                     /locus_tag="SF008_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HEG8233264.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLAA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPECVIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIIDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKETTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYTHLIKAITAAEAYDGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            10994..>11182
                     /locus_tag="SF008_000988"
     CDS             10994..>11182
                     /locus_tag="SF008_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEG8233265.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIMLDKVKIYDRWYK"
BASE COUNT         4069 a         1372 c         2041 g         3700 t
ORIGIN      
        1 cttaataaag attttttaga tgagtatgaa gctatagttt atgatttgca aggtttttta
       61 agtaaatttg aagaaaattt attaagtgaa atttctcaga ttaaagaagt ggttttaagt
      121 tttaaaacga gtaaatttaa tcttgaatat cttttaaaac ttgatttttt aaaaatattt
      181 gatttaaaaa taaacactca ttatgaaatc aatctttcaa aacaagagat cttaaaagaa
      241 gaaattttta aaacaaaaaa ttcaaaaatg aaactcaaat cttttgaatt aagggctttg
      301 caatgtgctt ttgttatgga tgaaatttca cattttgtac gcaaaggttt aaagcctgaa
      361 aatattgcag ttataactcc agatgaaagt ttttgtgagt ttttaagact ttttgataaa
      421 gacaatatgc ttaactttgc aagtggaatt agtattaaag agagtttgtt ttatcaaaaa
      481 tttcaagcac tttatgaaag tgctagtagt gcttcttttg tctataaaaa tcaagaggat
      541 tattttgaag acacgcagat gatttttgat tatcacaata cgcttttaca ttctttaaaa
      601 cttgatttta tagagtttaa aaagtatttt gatgagaaat gtgattttaa atattttgaa
      661 aaattacttg ctttgttttt agaaaatgaa aagcaagagc ttatttattt gatacgaaaa
      721 gaactttatt ttattaaaga tttattgaaa aatcagtctt taactcttaa agagttgatc
      781 catctttttt tcatgcaaat ttcacaactt tcccttagtg atgtaggtgg aggtaaggtt
      841 acggtaatgg gacttttaga aagtcgtggg ctttgttttg atggagtgat tttggttgat
      901 tttaatgaag aatttattcc taaaagaagt gttaatgagc tttttttaaa caatgaagtg
      961 cgtaaaaaag caggattgat tagctatgat agaagagaaa atttacaaag attttattat
     1021 gaaagcttga tgaaaaatgc tttagaagta agtatttgct ttgtggaaaa tgaagaaaaa
     1081 agcaaatcac gttttttaga tgaacttgat tttgactttt tttatgaaac tcatatccac
     1141 caaaaagctt atcttaatgc tttaaaatta gactatgaag gcataaaacc taatctaact
     1201 cctataaaag ctcctatttt aaagcataat cctttcgagt ttccgctttc ttgtagtcgt
     1261 tttaatttat tggaaaatca aaaaagaact tattattatc gttatatttt aaatttagca
     1321 gaacctaggg ttttaagcga ggaaagcaaa gcgaaaaatc aaggaaattt tatccataaa
     1381 atgcttgaaa tttattataa aaattattca aataatgatt ttgatataaa agtttttgca
     1441 aatttattga ataaagaata tcaaaaatac aatatcagtg aacttgatct tgaagtattt
     1501 aaattaaaat ttatacaatt tgctaaaaat gaaaaagagc atttttcaaa aggcttttat
     1561 gtcgcacata cagagcttga gttaaacaat attttaaagc tcggaacaga tagtataaaa
     1621 cttaagggta ctatagatcg tatcgatagt tcaaaagaag gtaatttgat tattgattat
     1681 aaaagtggaa aagtgccaag taattcttat caacttgctt tttaccaagc tttatatgat
     1741 gaaaatgcaa gcgtgggttt ttatgattta aatagtatgc aaatattgca tcaaaaagcc
     1801 aaaagtttag atgagctaag agaaagactt aaagatttag ttcttatgag taaggaagaa
     1861 atagagtttg aaaatgaaca agatgagtat tgtccttata aactcattta taaaaaggaa
     1921 ttaaaatgag tcaatttgag ccttttttgg cattagaagc gagtgcagga agcggaaaaa
     1981 cctttgccct gagtgtgcgt tttgtagcac ttattttaaa aggagctagg attaatgaaa
     2041 ttttagcttt gacttttacc aaaaaagctg ctaatgaaat gcaaaaaaga attattgaga
     2101 cttttttaaa cttagaaaaa gaaaataaaa ccagtgaatg caatgaactt tgcaagcttt
     2161 taggtaaaga taaagaagag cttatttctt taagagatgc taaaaaagaa gaatttttaa
     2221 gaacagagtt aaaaatcagt acttttgatg cttttttcgg aaaaattttg cgtgtttttg
     2281 ctttaaattt gggcttaagt agtgatttta caatgagtga agagaggctt gatgtaagag
     2341 agattttttt aaaacttctt aaaaaagatg aattaaaaga tttggcttat tatattaatt
     2401 tagttgatga gaaagaaaat ttttttaacg agcttgaaaa attttatgag aatgcttatt
     2461 ttcaaaatcg tcctaaaatt ctaaatccaa ctaaagctta tatcaataaa gcttatagtg
     2521 agttaagaag ttattgtttg ggtcttactc atgtaaaaaa ttataaaaat ttgtgtgaca
     2581 attttaaaag tgaagtttta gatttatccg tgtttatgca atcaagtttt atgacaaaat
     2641 ttgaaagtac aaaatattta caagatttag aaagtactaa cttgcatttt agtgcaaaaa
     2701 gaatggagct tataaatgct ttaaatacct atgccataga gcttgaaaat tataaaattg
     2761 ctaatttaat gaatctttta aatcattata gtgaagctaa aaatatattt cataaagata
     2821 aaaatacctt aaatttccaa gatgtgagta aaaaagttta tgagttaata accagtgaat
     2881 ttaaggatat gatttatttt cgtttagatg gttttatttc gcatttgctt attgatgaat
     2941 ttcaagatac aagcgtgatc caatatcaaa ttttacgccc tttgatcgct gagcttgttt
     3001 caggagaagg ggttaagaaa aatcgcactt ttttttatgt aggagataaa aaacaaagta
     3061 tttatcgctt tcgtaaagga aaaaaagaat tatttgattt gttaaaacaa gaatttagtc
     3121 aaattaaaag tgataattta aatactaatt atcgttctaa agagcttttg gttgattttg
     3181 ttaatgaaac ttttaaagaa aaaatcaaag attataaaga acaatttgcc ttagaaagta
     3241 aaaaaggcgg ttttgtgcgt attgtggagt ctaaggaaca aaaggttaaa aaccaagccc
     3301 aagaaattaa ggaaaagact ttagaaactt tatttgagca aattaatttt ttaagatcta
     3361 aaaatatttc ttatgatgat atttgtattt tgtgttggaa aaatagcgat gcggatatgg
     3421 ttttggattt tttaagagag caaaatattc ctgcttttac tcaaagtaat gttttgcttg
     3481 aaaataaagc aagtgtaaga cttgttttag aatatgctaa atattgtatt tttggtgatg
     3541 agttttactt ggtattttta aaggaacttt taggttttga gccgagaaaa attacccttg
     3601 atttttcaaa aaatgctatg gaaaatgtac tttttttaat aaaagaatta aaacttgatt
     3661 taaatgatat cgctttaata caatttatcg aatatgctaa aactaaggag aattttttaa
     3721 agcttttatt tgagccttgt gctttgaaaa tagtaagcga acaaaatatg ggaattagta
     3781 ttatgagtgt gcataaatct aagggtttgg aatttgatca tgtgatttta cttgatagtt
     3841 tatctaaaaa caattcaaac aatgaagata tcatgcttga atatgatatc aatcaaggtt
     3901 ggcaactcca tattaaagat aaaattcgag agcttactaa agagcctatt tatactcttt
     3961 ttaaagaaaa tattacaaga gcaaattatg aagatgatat taataaactt tatgtggctt
     4021 ttacaagagc taaggaaagt ttgatcatca taaaaagaaa tgaagaaagt gtaaatggaa
     4081 attatccaag ttattttaag gggggatttt taaatataca ttctcaagag agaggttttt
     4141 tagaaagcaa agaacaaatt ttaagcgtta aaaaagaaag cattcaaact ttgcaaaaat
     4201 ttgaaaaaat taccttgcaa gaaattcaaa gcgaagaaag gcttgatagt aaagaactat
     4261 attttggaaa tgcttttcac ttttttatgc aaaatttaaa acttcctaag ggtgaaaatt
     4321 ttcaaatact tactcaaaga tgcaagagta aatttagaca ttttttagat gagagtgatt
     4381 ttgaaaagct ttttaaaaga attgaaattt tacttaaaaa tattcaattt caaaatttga
     4441 ttggtgatgg aaagctttta aaagaacaag ctttgagttt taatggagaa attaaacaat
     4501 tagacttgct tgctttaaaa gatgaagaag cttttataat tgattataaa acaggtcttg
     4561 ctatgcaaga taaacataaa gagcaggtag gaacttataa gatcgccatt agtgaaattt
     4621 tgcaaaaaga taaagtgcgt gcttttatag tttattgttt ggaaaatgaa attcaaattt
     4681 tggaaatata aactttattt ttacttaaat taagtaaaaa ttaatattat tttttataca
     4741 atcacatttt aaatttttgg caaaggtaaa aattatgaca aagataacaa agccaaacga
     4801 agtaaaacga gaatggattg ttttagacgc agaaggcaaa cgctttggtc gtcttttaac
     4861 tgaagtagca acaattttga gaggtaaaaa caagccttgc tttactccaa atgttgattg
     4921 tggtgattat gtaattatca tcaatgcttc aaaagctgta tttacaggtg ctaataaagc
     4981 agaagataag ctttatcata gacattcagg atattttgga agtgtaaaaa gtgaaaaatt
     5041 tggtgattta cttgaaaaaa atcctgcaaa attgtataaa ttagcagtta gaggtatgct
     5101 tcctaaaaca aatttgggca gagctatgct taaaaaatta aaaatctatg cgggtagtga
     5161 gcacccacac actgcacaaa ttgctaaaga aggaaaataa tcatggcaac aacatacgca
     5221 acaggtaaga gaaaaactgc tatcgcaaag gtatgggtaa aaccaggtag tggtaaaatt
     5281 agtgttaatg gttttgattt aaacacttgg cttggtggac acgaggcgat taagcttaaa
     5341 gtggttcaac ctttacttgt gactaaacaa gaaacttcaa tggatattaa ggcaactact
     5401 ttaggcgggg gctatagtgc tcaagctgaa gctttaagac atggaatttc aagagcttta
     5461 gcagctatgg atgctgattt tagagcctta ttaaaaccta aaggacttct tactagagat
     5521 agtagaactg ttgagcgtaa aaaatatgga cgccgcaaag caagaagaag cccacaattc
     5581 tctaaacgtt aatatttttg gtgggatttt cccacctttc tacaattttt tataaaactc
     5641 atcctttttt ctatcattta tgttataatt gcaaaattta aatttttatt ttataacaca
     5701 atgaaaggtt ttttctatga aaaaaatatt cttatgttta ggtttggcaa gtgttttatt
     5761 tggtgctgat aacaatgtaa aatttgaaat cactccaact ttaaactata attactttga
     5821 aggtaattta gatatggata atcgttatgc accagggatt agacttggtt atcattttga
     5881 cgatttttgg cttgatcaat tagaatttgg gttagagcat tattctgatg ttaaatatac
     5941 aaatacaaat aaaactacag atattacaag aacttatttg agtgctatta aaggtattga
     6001 tgtaggtgag aaattttatt tctatggttt agcaggtgga ggatatgagg atttttcaaa
     6061 tgctgcttat gataataaaa gcggtggatt tggacattat ggcgcgggtg taaaattccg
     6121 tcttagtgat tctttggctt taagacttga aactagagat caaattaatt tcaatcatgc
     6181 aaaccataat tgggtttcaa ctttaggtat tagttttggt tttggtggca aaaaggaaaa
     6241 agctgtagaa gaagttgctg atactcgtgc aactccacaa gcaaaatgtc ctgttgaacc
     6301 aagagaaggt gctttgttag atgaaaatgg ttgcgaaaaa actatttctt tggaaggtca
     6361 ttttggtttt gataaaacta ctataaatcc aacttttcaa gaaaaaatca aagaaattgc
     6421 aaaagtttta gatgaaaatg aaagatatga tactattctt gaaggacata cagataatat
     6481 cggttcaaga gcttataatc aaaagctttc tgaaagacgt gctaaaagtg ttgctaatga
     6541 acttgaaaaa tatggtgtag aaaaaagtcg catcaaaaca gtaggttatg gtcaagataa
     6601 tcctcgctca agcaatgaca ctaaagaagg tagagcggat aatagaagag tggatgctaa
     6661 atttatttta agataatgaa taaaactatt ttatttgatt tagatggcac tttaattgat
     6721 tctactgatg ctattttaaa ttctttccaa ggagctttta aagcccttgg attaacttct
     6781 aaaaataatg aagaaatcaa aaatctcata ggttatcctt tagagcaaat gtttagaatg
     6841 ctttatccag ataaagtaaa tttaagtaaa gaatttgtat tagcttatcg tgaaatttat
     6901 gcacaaattt atttagaaca aaccactctt ttgcctaaag caaaagaagc attagaactt
     6961 ggaagcgaaa ttgcagatct tggtatagtt acaacaaaag gaggtaaatt tactccgatt
     7021 ttacttgatt atttgggagt taaaaaattc tttaaaactt taattactct tgaagatgtc
     7081 acaaatccaa agccaagttc cgaacctata attttagcct taaaaagact caataaaact
     7141 caagaaaatg cctatatgat aggcgataca atattagata ttcaagctgc aatttctgct
     7201 aatatcactc ctttggcctt aacttgtggc tatggcaatg aaaatgaatt aaaagctcat
     7261 tctatagtat ttttaaatgc atatgaggct gttaattata tagctagatt aaactaattt
     7321 caagttttcg ttaaacgcct tttaagagaa tttatagtaa attgatagct aaaaaattat
     7381 aaaaattatc aatataaagg aaggtctcaa tgggtaaaat tatgaaaact atggacggaa
     7441 atgaggctgc tgcatacgct gcgtatgctt ttactgaagt tgctggaatt tatcctatta
     7501 cacctagttc tcctatggct gattataccg atatgtgggc agctgcagga aaaaaaaatc
     7561 tttttggagt tcctgtaaaa atcgtagaaa tgcaaagtga agcaggagct gcaggtagtg
     7621 tgcatggatc tttacaagct ggggctttga ctacaactta tacggcttct caaggattac
     7681 tccttaaaat tccaaatatg tataaaatag caggtcaatt actcccctgt gtaatccatg
     7741 tagcagcgcg ttctttggct gctcaagctt tgtctatctt tggtgatcat caagatattt
     7801 atgcagcaag acaaattggt tttgctatgc tttgttcgca ttctgtgcaa gaaaccatgg
     7861 acttagctgg tgtagcacat ttagctgcaa ttaagggaag agtgccattt ttacattttt
     7921 ttgatggttt tagaacaagc catgaaattc aaaaagttga agtaatggat tatgcgcatt
     7981 ttgatagatt attagataga gaagctttgc ttgaatttag aaataatgct ttaaatccag
     8041 aaaatccaaa aacacgtgga acagcacaaa atgatgatat ttattttcaa actagagaag
     8101 taagcaatcg tttttacgat gctttacctg atgttgttaa tgaatatatg caagaaattt
     8161 caaaaattac aggtagagaa tacaaaccat ttacttatta tggtcacaaa gagccagagt
     8221 gtgtgattgt tgctatgggt tctgtaactc aagcacttga agaagtggtg gactatctta
     8281 atgccaaggg tgaaaaggta gggattttaa aagtttatct ttatcgccca tttagtttaa
     8341 aatatttctt tgatgttatg ccaaaatcag tgaaaaaaat tgcggtttta gatagaacca
     8401 aagaaccagg aagtcttgga gaaccacttt atcttgatgt aaaatcagct ttctatggaa
     8461 gagaaaatgc tcctgttata gtgggtggaa gatacggact ttcttcaaag gatgttgatc
     8521 ctgctcaaat gatagcagta tttgaaaatc ttaaacttga taatccaaaa gatggcttta
     8581 ctgtaggtat aattgatgat gtaactcata cttcactgag tactggagag aaaatttcac
     8641 ttggagatga aagtacgatc gaatgtttat tttacggact tggtgctgat ggaactgtgg
     8701 gcgcaaataa aaactcgatt aaaatcatcg gagataaaac ggatttttac gctcaagctt
     8761 attttgctta tgattctaaa aaatcagggg gttatacaag aagccattta agattttcta
     8821 aaaaacctat ccgttcaact tatcttgttt caactccgca ttttatcgct tgttcggtag
     8881 cggcttattt ggaaatttat gatgttttag caggaattcg caaaggagga actttccttt
     8941 taaatagtat ttggaatgct gaagaaacca taagacaact tccagatgca gtaaagaaaa
     9001 ctttagctga aaaagaagta aatttttata tcatcaatgc aaccaaacta gctcgtgata
     9061 taggtttggg aaatcgtaca aataccatta tgcaatcagc ctttttcaaa cttgcaaaaa
     9121 tcattcctta tgaagacgca caaaaataca tgaaagagct tgcgtataaa tcttatagta
     9181 aaaaaggcga tgctattgta gaaatgaatt acaaggctat tgatgtgggt gctgatggac
     9241 ttgtaaaagt tgaagtggat ccaaattgga aaaatttaga gcttaaagaa aaagaacaaa
     9301 ccaatgccta taaaggtact gaatttgttg aaaaaatcgt aaaacctatg aatgcggcta
     9361 agggtgatga tttacctgtt tcagcctttt taggttatga agatggaagt tttgaacacg
     9421 gcacaaccga atacgaaaaa cgcggtgttg gggttatggt accaagatgg atagaggcaa
     9481 attgtattca atgcaatcaa tgtgcttcag tttgtccgca tgctgttatc aggccatttt
     9541 tgattaatga tgaagaaatg gcaaatgcac ctcgcggtgt aaaagatcat gctttagaag
     9601 ctaaaggaac caaaggagaa aaattaagct ttaaaattca agtttctcca cttgattgta
     9661 caggctgtga gctttgtgtt catgagtgtc ctactaaaga aaaatctttg gttatggtac
     9721 cacttcaaga agagatggat tttggtgagc aagaaaatgc ggattattta tttaaagaaa
     9781 ttacttataa agatgatatt ttaaataaag aaaccacaaa aggagcgcaa tttgcccaac
     9841 ctttatttga attccatggg gcatgtcctg gatgtgggga aactccttat attactttaa
     9901 ttacaagatt gttcggtgaa agaatgattg tggctaatgc tacaggttgt agttctattt
     9961 atgggggttc agctccatca actccttata gaaaaagtgt gaaaaatgga cacggtcctg
    10021 cttggggaaa ttcacttttt gaagacaatg ctgagtttgg tttgggtatg aaaattgcaa
    10081 ctgaaaatac aagacaccgc attgaacata tcatgaatga aagtatgcaa gaagttccaa
    10141 atgctttatc agctcttttt aaagattgga ttgcaaataa agacaatggt gctatgtctg
    10201 tggaaattaa agataaaatg atccctattt tagagcaaaa taaaaatatt aaagccgtac
    10261 aagatatatt agagcttaaa cagtatttaa gtaaaaaatc tcactggatt tttggtggtg
    10321 atggttgggc ttatgatata ggctatggcg gacttgatca tgttttagca agtggagaaa
    10381 atgtaaatat tttagtgctt gatacagaag tttattctaa tacaggcggt caaagttcaa
    10441 aatcttctag aacaggagct gtagcacagt ttgcagcagc aggcaaacct atacagaaaa
    10501 aagatctagg tcaaattgct atgacttatg gttatatttt tgtagcacaa gtaaattcaa
    10561 cggcaaatta tactcatctt atcaaagcta tcactgcagc tgaggcctat gatggaccat
    10621 ctttggtgat ttgttattct ccttgtatag ctcatggtat taaaggtggg ctgggttact
    10681 caggagagca aggtgagctt gctacaaaat gtggttattg gccactttat acctttgatc
    10741 ctcgtttaga agagcaagga aaaaatcctt taactctaac aggaaaagaa cctgattggg
    10801 atttatatga gcaatttttg atgaatgaag tgcgttataa ttcacttaaa aaagcaaatc
    10861 ctgaacacgc tgctgagctt tttgaacgca ataaaaaaga cgctcaacgt cgctatagac
    10921 agcttaagcg tatcgctatg gctgattata gcaatgaggt cgaaagctga taaaatatat
    10981 ttttagtgct acattgtgtt ttagcacttt gtttgcacaa gataattttg aagagtattt
    11041 taaacttata gataaagaaa atcgtataaa ttttaatact cttcaaaacc catttgtgaa
    11101 tcctactttt gaaaaattaa gacatattaa aattactgca attatgcttg ataaagtaaa
    11161 aatttatgat cgatggtata aa
//
LOCUS       DARGEY010000044        11006 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.044, whole genome shotgun sequence.
ACCESSION   DARGEY010000044 DARGEY010000000
VERSION     DARGEY010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11006)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11006)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11006
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.044"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..903
                     /locus_tag="SF008_000989"
     CDS             <1..903
                     /locus_tag="SF008_000989"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HEG8233266.1"
                     /translation="HGINGATSNPAIFKNAILNSPIYKDKILKLKEKKTKDIYEELAI
                     SDIQKAADKLAPLFYQKNDGFISIEIDPRLHDNTTLSLGEAKRLYSAISKENVMIKIP
                     ATKASYEVMYELMKNGISVNATLIFSLEQSQKCFEALNAGLVEFRKNNIALKEQNTRT
                     PQAVISIFVSRFDRLLNPKAKEQNRIGILNANLAYNNIYSKNEPNIRALFASTGVKGD
                     DLPKDYYIKELLFENSVNTAPLDAIEAFKGKMHFKKPLMNFEIYTELNQIISQNEREK
                     ACNDLLSDGLEQFCIAFEDILKAL"
     gene            complement(904..1326)
                     /locus_tag="SF008_000990"
     CDS             complement(904..1326)
                     /locus_tag="SF008_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HEG8233267.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFCELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEEWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(1323..4592)
                     /gene="carB"
                     /locus_tag="SF008_000991"
     CDS             complement(1323..4592)
                     /gene="carB"
                     /locus_tag="SF008_000991"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEG8233268.1"
                     /translation="MPKRTDIKNILLIGSGPIVIGQACEFDYSGTQAAKTLKEQGYRV
                     VLINSNPATIMTDPEFADATYIEPVTKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLSKSMYAYNYDEALKAVDEI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESLLGWKEYEMEV
                     IRDKNDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAVNPTNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEDRNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYARMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDAKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNNELYMIEVNPRASRTIPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIHLVIN
                     TSDSHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
     gene            complement(4853..5602)
                     /gene="mreC"
                     /locus_tag="SF008_000992"
     CDS             complement(4853..5602)
                     /gene="mreC"
                     /locus_tag="SF008_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEG8233269.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGLIKQNVLRVNDFVIGNFYNIK
                     DYLGKKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILEDQNSTKYLPQVS
                     LTRVISYVQLNDYKKLWLDWSKIPVGKNRGLIYQGYTAGIAINKNGRAMALLQGDDQC
                     VFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINTGDEILTSGLDNIFFSDIPVGIVN
                     RVNDEDMYQSVEVKPYVKISIPAYLYVVDNL"
     gene            complement(5592..6632)
                     /locus_tag="SF008_000993"
     CDS             complement(5592..6632)
                     /locus_tag="SF008_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEG8233270.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGASLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGFDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            complement(6643..7866)
                     /gene="clpX"
                     /locus_tag="SF008_000994"
     CDS             complement(6643..7866)
                     /gene="clpX"
                     /locus_tag="SF008_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEG8233271.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKNYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            complement(7859..8650)
                     /gene="lpxA"
                     /locus_tag="SF008_000995"
     CDS             complement(7859..8650)
                     /gene="lpxA"
                     /locus_tag="SF008_000995"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HEG8233272.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGTRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            complement(8650..9090)
                     /gene="fabZ"
                     /locus_tag="SF008_000996"
     CDS             complement(8650..9090)
                     /gene="fabZ"
                     /locus_tag="SF008_000996"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEG8233273.1"
                     /translation="MIDVMQIQEILPHRYPFLLVDKITELKVKEVVRGYKNISISDHV
                     FMGHFPGHPIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVR
                     PGDRLDYEMSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
     gene            complement(9185..10276)
                     /locus_tag="SF008_000997"
     CDS             complement(9185..10276)
                     /locus_tag="SF008_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HEG8233274.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECELYRVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSPVNKQILPASIEARIALYKKVVLWEKKG
                     IKFEILREKFLNYRLLSALIKLDKKPVKSHILFYSHFKNAYTRFSLDEENLKQNLKEG
                     FYRSTKDEIVLVEFWRFNAFFKNKWKNFEDFLKKPLSVQAEIKWRNKLFGTYNLSPII
                     ILENILPSRYEVIAKSEIYHDNQEVLVKI"
     gene            complement(10276..10731)
                     /gene="bcp"
                     /locus_tag="SF008_000998"
     CDS             complement(10276..10731)
                     /gene="bcp"
                     /locus_tag="SF008_000998"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HEG8233275.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSANYDKFGGKNAVIIGISPDSVASHEKFISKFDLKHILLSDSEKEVAKAY
                     GAWGLKKNYGKEYEGLIRSTFVIDETGKIVQIYSNVRVKDHALKVLESL"
     gene            complement(10728..10934)
                     /locus_tag="SF008_000999"
     CDS             complement(10728..10934)
                     /locus_tag="SF008_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HEG8233276.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITKLLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKAIK"
BASE COUNT         3605 a         2172 c         1325 g         3904 t
ORIGIN      
        1 catggaatta atggcgctac ttcaaatcct gctattttta aaaatgctat tttaaattct
       61 ccaatttata aagataaaat tcttaaatta aaagaaaaaa aaacaaaaga tatttatgaa
      121 gaattagcaa tttctgatat tcaaaaagca gctgataaat tagctcctct tttttatcaa
      181 aaaaatgatg gatttataag tattgaaata gatccaagac ttcatgataa cacgactctt
      241 agtttaggcg aagctaaaag actttatagt gctattagca aagaaaatgt aatgattaaa
      301 ataccagcta caaaagcttc ttatgaagta atgtatgaac ttatgaaaaa tggtattagc
      361 gtcaatgcta ccttaatttt ttctcttgaa caaagtcaaa aatgttttga agctttaaat
      421 gcaggtttag tcgaatttag aaaaaacaat atagccttaa aagaacaaaa tactagaaca
      481 ccacaagctg ttataagtat ttttgtaagt cgttttgata gacttttaaa tcctaaggct
      541 aaggagcaaa atcgtattgg aattttaaat gcaaatttag cttataacaa tatctactca
      601 aaaaatgaac ctaatattcg cgccttgttt gcaagcaccg gagttaaagg agatgatctg
      661 ccaaaagact attatatcaa agaacttctt tttgagaatt ctgttaatac tgctcctctt
      721 gatgcaatag aggcatttaa aggaaaaatg cattttaaaa aacctttaat gaattttgaa
      781 atttatacag aacttaatca aatcatttct caaaatgaac gagaaaaagc ttgcaatgac
      841 ttattaagtg acggcctaga gcaattttgt attgcttttg aagatatttt aaaagctctt
      901 taattaacgt atttttatca ttttattctt tgaaagtttt aatatttttg atgggatatt
      961 ttcgaaaaat ttctcatcaa gtattatatc ggcaacactt ctagcccatt cttcatcaaa
     1021 ttcttttcca tgcttgtttg ccgaagatga ataaaaatag ccatttttac ttaaaaaatt
     1081 cgcatgttta cactctttca caatacgaat ggcctgatta ttgggataaa taaaagttgt
     1141 ttttttagaa cgacgtacta aatttttaaa agattttgga attcttgcta aactttttaa
     1201 ctcgcaaaat ttcgcagaag tgattaagca aggctgattt ttatctctac cttttaaagc
     1261 attaatctct tctaaatttt tacttaaaaa tcctaccgta gtatctgttt gagctaaata
     1321 aatcaagatt taagccactc ttgcaaactc tttacatcta ggcaagattt actctgtata
     1381 gctttaatcg attttgcacc tgctaaagct gatcgtaaat ttgtaaaata aggtatttta
     1441 aaacgaataa tattttcacg aatttttttc gtatcgcctt taaaactgtg actatcgctt
     1501 gtattgataa ctaagtgaat ttctccattt ttcaatttat cttcaacatt ggggcgtcct
     1561 tctgaaattt tatgtacaag ttcgcactca aaaccacttt ctaaaatttc cttgcaagtt
     1621 ccccctgttg ccataagctt aaagccaagc tttacatatt ctgcagcgat ttttttggta
     1681 tattttttat ccttatcttt taaggagata aataccacgc cttgctctgg aagatgatta
     1741 aacgatgcaa tttgactttt cgcataagaa tttgcaaaat ccttgcttat acccataact
     1801 tcacccgttg aacgcatttc aggacctaat tctaaatcac ttccactaag ttttgcaaat
     1861 ggaaatactg cttctttcac gctcatatat tttggagttt tagggcgtaa aattttagta
     1921 tcaaaattaa ccactttaaa agtatcataa aattttaaag cttcttttaa atttccttgc
     1981 cacatcacac gcgttgccac ttttgctaaa ggaatacccg tagctttact aacaaaaggt
     2041 atggtacgac tagctctagg atttacctct atcatataaa gctcattatt atgtaaagca
     2101 aattgtatat ttaaaagtcc tacaactccc aaatttaaag caatatctgc ggttttttgt
     2161 gcaataaatt cttgcatttt ttcatcgata ttgcaaggcg gcaaagaaca agcactgtca
     2221 cccgaatgaa ttcctgcttc ttctatgtgc tccataattc ctgcaacata aacatctttg
     2281 ccatcacaaa tcgcatcaac atcaatttct gtagcattgt ctaaaaactg atcgatcaaa
     2341 acagggcttt tatcgcttac atccacagct tcttgcatat agagtctaag ttcagcctca
     2401 tcatttacca cgcgcatcgc acgcccacct aaaacataac ttggtcttac aagcacagga
     2461 taccctatat cactagcctt aagaaccgct tcttctacgc ttgttgcagt agaatttttt
     2521 ggctgattga tacctagctt tgtaataaat tcggcaaatt tctttctatc ttctgccata
     2581 tcaattactc ttgcgctagt acctataatc ttagctccaa aagcacttaa acgcttagca
     2641 aatttcaaag gagtttgtcc accaaaatgc acaatcactc catcaggttt ttcacgctca
     2701 atcaccgctc ttaaatgttc gaaatcaata ggctcgaaat acaaaatatc acttgtatca
     2761 tagtcagtcg aaacggtttc aggattacaa ttatacataa tagttttaat acccatatct
     2821 ttaagcgcaa aagaagcatg tacgcaagca tagtcaaatt ctataccttg tcctatacgg
     2881 tttggccccc cacctataat catcactttt ttttcttttt tatccttagc atcgttttta
     2941 ctttgagtga gttcgcttac attgatactt gaataaagat aaggagttaa ggcttcaaat
     3001 tcacccgcac aagtatccac ttcactaaat tctgcgatga ttttttgctt cattcttgca
     3061 taataaatat cattttggct taattctaaa ttatctttca aatttacaag caaggctatc
     3121 attttatctg aaaagcccat agtttttgct tttctcaaaa gagccttatt gtttaaaata
     3181 tccatatcaa tttgttcttc aaaatctaca atttctttaa tctgtgttaa aaaccaagga
     3241 tctattttac aaagctcata aagttcttct acgctaaaac cttccctaaa agcttgagca
     3301 acataaagta aacgcttttc attggcattg cgaattttaa aaacaagatc atttctatct
     3361 tcaaatttta ccctatcaaa accacttaaa gaacgctcaa gcgaacaaag tgctttttgt
     3421 atactttctt taaaagtgcg tcctatagcc attacctcac ccacactttt catagctgta
     3481 cctaaagttg tatttgctcc tggaaatttt tcaaaggtaa agcgaggaat ttttgttaca
     3541 atataatcaa tcacaggctc gaaagatgca ggagttcctg taatatcatt tttaatctca
     3601 tctaagctaa aacctactgc caaaagtgtt gcaacctttg ctataggata acccgttgct
     3661 ttagaagcta gggcgcttga tcttgaaacc cttggattca tttcaataac tatcattcta
     3721 ccatttgttg gattgacagc aaattgcaca tttgatccgc ccgtatcgac gcctatttca
     3781 cgcaaaatgg caaaagaggc attacgcata acttggtatt ctttatcagt taaagtaaga
     3841 gcaggtgcaa ccgtgatact atctcctgta tgcactccca taggatcaag attttctata
     3901 ctacacacga taatgcaatt atcattttta tcgcggataa cctccatttc atactctttc
     3961 catccaagca aactttcttc gataagaatt tcatggattg gcgaaagtgc taaggcagta
     4021 ttagcgagtt ctttaaattc atccatatta taaaccacac cacttccagc accccctaaa
     4081 gtataagaag cacggatcat caaaggaaag ccgatttcat ctacagcttt taaagcttca
     4141 tcataattat acgcgtacat agattttgac aaatccatgc cgattttttt catacattct
     4201 ttaaaaactt gacgatcttc gcctttttta atcgcttcag ggtttgcacc caaaaacttc
     4261 acatcaccta aaagtccgct ttcataaact tccatagcta catttagagc cacttgtcca
     4321 cccatggttg gcaaaatggc atcgattttc tcttttttaa taatacttaa aatactttcc
     4381 ttggttacag gctctatata agtagcatca gcaaattcag gatcagtcat aatagtcgct
     4441 gggttagaat tgattaaaac tacgcgatac ccttgttctt ttaaagtttt tgctgcttga
     4501 gttcctgaat aatcaaattc acaagcttga cctataacga taggaccact tcctataagt
     4561 aaaatatttt taatatctgt tcgttttggc atgaattttc ctaagagcat aaatttgggc
     4621 tgattataac aaaaattagt tttataaact ttgaaattat cgatataatt ttaaaaaata
     4681 aacactctgc ttttaatcta ggaaataata cataaagaaa tttaagattt tttataaaat
     4741 tctcattcaa ttataaacat ttatttgata atttaacaaa atttttagca ttaaacaaag
     4801 ttataataat tagcaaaaat atagaaaatt tttaaaaagt ctaatccttg acttataaat
     4861 tatctactac atataaataa gcaggaatac taatcttaac ataaggcttt acttctacac
     4921 tttgatacat atcttcatca ttaactctat tcacaatacc gacaggtata tctgaaaaga
     4981 aaatattatc aagtccactt gttaaaattt catctccggt attaattttt gcccattttg
     5041 gaataaattt aaccacaatc ctgccatctt caccctggat taaacctgga gctttggatt
     5101 ttcctatata aacagaaaaa acacactgat catcaccttg taagagagcc attgctctac
     5161 catttttatt aatagctata cctgcagtat atccttgata tattaaacca cgatttttac
     5221 caactggaat tttgctccaa tctaaccata attttttata atcattcaat tgaacgtaag
     5281 aaataactct agttaaagaa acttgaggta aatattttgt agaattttga tcctctaaaa
     5341 tacgatttaa ttgatttgca aaactagtta cctttacagc aatatcttct aattctttat
     5401 ttctagcttt tagttgctga atttgatttg cttgattaaa gtgttctgaa attttttttc
     5461 ccaaataatc tttaatatta taaaaattac ctataacaaa atcattaaca cggagaacat
     5521 tttgcttgat aagtcctcca taataaaaag atataaaaac caaaaaggct aagacaagaa
     5581 cataaaaaat cttattcttc attggttaat tgttgcaata atgaaatttc ctctaaagct
     5641 ttacccgttc cttttgctac agctaaaagc ggttcatctg cgatataaac tggcaaacgt
     5701 acaatttcac ttaagtattt atcaaaacca cgaatcaatg ctccaccacc tgttaaaact
     5761 acaccatttt ctactatatc acttgctaaa tcaggcggca tcatttcaag aaccattttt
     5821 aaagcatcag caatttcttt taaatactca cgcattgctt ctcttacatc ttcacttgta
     5881 agttcaatac gacttaaaag tccacttact tgatcgcgtc cttttaccac catagaaagt
     5941 tcttttggaa gttgtattgc tgaacctatg gtgattttga tctcttcgcc tgttctttca
     6001 cctatgataa gattgtattt ttcttttaca taattaacta tactcatatc aagcttatct
     6061 ccagccgtac gaatagactt tgaaatcaca agtccaccca aagaaatcac tccgatctca
     6121 gtagttccac cccctatatc tactaccaaa tttcctttag gttcttgtat aggtaaactt
     6181 gcaccaatag ctgctgccat aggctcttcg atcaaaaata cctctcttgc acctgcactt
     6241 aaagcacttt ctcttaccgc ttttctttct acttgagtta aaccataagg aacagaaata
     6301 ataattctag ggcgtaaaaa actttttcta cgatgtgttt tttctataaa atagcggatc
     6361 attttttcag tcatatcaaa atctgcaatc acgccatctt tcataggacg aatagcttcg
     6421 atattgcctg gagtttttcc caccatatct ttagcttctt tacctacggc taaaattttt
     6481 gctttggaac catacctttc tctttcaact gccacaacag aaggctcgtt tatcactata
     6541 cccttatctt ttaccaaaac tagcgtatta gctgttccta aatcaatccc catatcacta
     6601 gaaaaaaatc ctataagttg atctaatatc atttctatcc ttttaactta tttttctttt
     6661 tattaataat gcctttgcat tgtctttaac aacttctttg gttattacaa tatcatagtt
     6721 tttatactct ggtaactcaa acattaaatc taccatcatt tcttctataa tacttctaag
     6781 ccccctagcc cctgtttttc tctccaatgc aagctgtgcg atagctctta gagcatcttc
     6841 ttcaaatttt aaatttaccc catcaatagc aaaaagcttt tgatattgct taataatggc
     6901 atttttaggc tcagttaaaa ttcttaccat atcttcttca ttaagctcat ttaaagatgc
     6961 aatcacatgc aaacgaccta taagctcagg aatcaaacca aaatgcacca aatcatcagg
     7021 ttcaattttc tcaagtaaag ctttattttc ttcttttgca tcatcaaaaa agcccacaac
     7081 tttatcgcca agttttcttt ttaagatagt ttccaaacca tcaaaagctc caccacaaac
     7141 aaataaaata tttgaagtgt caatttgtat aaactcttga tttggatgtt ttcttccccc
     7201 ttttggtgga atatttacca aacttccttc gataatctta agtaaagctt gttgcacacc
     7261 ctctccactt acatcacgag taatagaacg attttcactc attctagcaa ttttatcaat
     7321 ctcatcaata aaaactatac ctttttgagc tctttgcaca tctccatctg cagcttgtaa
     7381 aagacgtgtt aaaatatttt ccacatcctc acctacatat cctgcttcag ttaaagaagt
     7441 tgcatcacaa attgctatag gtacatctaa aaatttagct aaagtttgcg ccaataaagt
     7501 ttttccactt cctgttggcc caacaagtaa aatatttgac ttaaaaagct ctgtatcatc
     7561 atcttgaagt tcagctttaa aaagtctttt ataatgattg tatactccaa cactaaaaac
     7621 ttttttagct ctatcttgtc ctatgacata acgatctaaa taagctttta attcttttgg
     7681 agtgatatct ttaaattctg tattatgact ttgtttaggt tctttaaatt ctttttcttc
     7741 tccataaata atactataag caccttcaac gcaatattca caaataaaag catcatcatt
     7801 ttcatttgct aaaattcttc tttgtggatt ctccacttca ttgcaaaaac tacattttct
     7861 aggcattatt tttaccccta tagacaggaa ttccacgctt tgtttctaat ataaaatggc
     7921 acattttttt aacattttca ctttcttgat tttcaagcaa atttttagca ttttctttta
     7981 aatctccttg tctaaataaa gttttaaaag ctctactaag tctatctact tcatctttat
     8041 caaaacgacg acgagtgcct actaaattta aacttctaat acttgcacga tttccttctg
     8101 ctaaacaaaa cggtactata tcctgagaaa gtgcacttgc tcctgctatc atacaaccct
     8161 cacctacttt gacaaattga tgaataggtg taagcccgcc tacaaccgta aaatctccaa
     8221 gctctacatg tcctgccaaa gttgcattat tagctaaaat aatattatta cccaaaagac
     8281 aatcatgagc aatatgacaa taagccataa taaaagcatt atcgcctata cgagtaaaac
     8341 catctccttt agctgtacct gaatttatcg ttgcaaattc tctaatagtt gcatttttcc
     8401 ctataacaac accgcttttt tgctcttctt tataagatat gtcctgagga atatcgccta
     8461 ctattgcata agaaaataca cgagaatgat cacctatagt tgtatctgaa agaattcgag
     8521 caccttgttt gatgacaaca ttattaccta ttttagcatc tttgcttaca taagcataag
     8581 cttctattac aacatcgtca ccaagttgtg caccctcttc aatcaccgca cttggatgaa
     8641 tttttttcat tatttatcca ctatcatagc tttaagctcg gcctctgcaa ctaaatttcc
     8701 atctacaaaa gcttgccctt taaaaatcca catattacca cgatttttaa ccacgctcat
     8761 ttcataatca agcctatctc caggacgcac aggatttcta aattttgctc catctatgcc
     8821 tgtgaaataa actactttac tttttggatc cactttatct tccatacttt caaaagctaa
     8881 aactccacct gtttgagcca taccttctaa aatcaaaact ccaggataaa taggatgccc
     8941 tggaaaatgt cccataaaaa catgatcact tatactgatg tttttatatc ctcgtaccac
     9001 ttctttaact tttaattctg taattttatc tactagtaaa aaaggataac ggtgtggtaa
     9061 aatttcttga atttgcatta catctatcat tattaaatta accttgaaaa caattaaaaa
     9121 ttttattata taaaaaaatc attaaaaatt atattaacaa aaaaagtttt tcttaataaa
     9181 tttcttaaat ttttacaagc acctcttgat tatcatgata aatttcactt tttgctatca
     9241 cttcatatct tgaaggtaaa atattttcga ggatgataat aggactaaga ttataagttc
     9301 caaacaattt attacgccat ttaatttctg cttgaacact taaaggtttt tttaaaaaat
     9361 cttcaaaatt tttccatttg tttttaaaaa atgcattaaa acgccaaaat tccactaaaa
     9421 ctatttcatc tttagtactt ctataaaagc cttcttttaa attttgtttt aaattttcct
     9481 catccaaaga aaatcttgta taagcgtttt taaaatgcga ataaaataaa atatgagatt
     9541 taacgggctt tttatctaat tttatcaaag cacttaaaag acgataattt aaaaatttct
     9601 ctcttaaaat ttcaaatttt ataccttttt tttcccataa aactactttt ttataaagag
     9661 ctattcttgc ttctatactt gcaggtaaaa tttgcttatt tacaggagac attaattcat
     9721 caataaaatt cttatcttgt ttttgttttt taagcccata aatgcagccg caatagtttt
     9781 gatgataaag catttccttt tttgctaaag caaactgtct ttgagtaccg ccatttttac
     9841 gaaaatcagg agctaaaaac tctactctat aaagctcaca ttctttttgt aaagcatttt
     9901 ttaactgttc taaatctttt ttagggctgg ttaaaagcgt agtagtaagc tttttttctc
     9961 ctattttagc agcaaattta acactagatc ccattcttac atcaaagcaa atttcacacc
    10021 ttgcaccctt ttcaggctca tcttcataac cacgcacagc attaagccat ttttcatact
    10081 catactcacc tttataaagc ttaataccaa gtttatcaca agatcttttt acatctaaaa
    10141 atcttagttc gtattcgctt aaaggatgga tatttggatc ataaaagtat cctataattt
    10201 tttcatcagg ataagtcttt ctaagttctt caataaaata atgactatcc acactgcaac
    10261 aaatatgcac taacattaaa gactttcaag cacttttaaa gcatgatctt ttacacgaac
    10321 attactataa atttgaacaa tcttacctgt ttcatcgata acaaaagtag aacgaataag
    10381 accttcgtat tcttttccgt aatttttctt aagcccccaa gctccataag ctttagcaac
    10441 ttctttttca ctatcgctaa gtaaaatatg ttttaaatca aatttagaga taaatttttc
    10501 atgacttgcc acgctatcag gactgatacc aataatcacc gcatttttac caccaaattt
    10561 atcataattt gcgctaaaat cacaagcttc tgtagtgcaa cctggggtat tatcttttgg
    10621 ataaaaatac aaaatcacct ttttgccaat aaaatctttt aatgctattt ttaccccatc
    10681 ttgatttaaa agctcaaact gaggtgcttt atctcctatg tttaaactca tttaattgcc
    10741 tttgctttga tagcttcaac gctttctccg ccaaagccta tatcataatt ttctacatct
    10801 tctaaaacca ccacaactct ttctttactt ttattatatt tcgtgcttaa aagtttggta
    10861 atatcagcta taagctccgc tttttgttcc ttgcttaaag acggctttgc taatttaata
    10921 tttactaatg gcataatttc tcctttttaa cgataatttt tcataattat ttcaaaaaat
    10981 acctaatatt ttttttaata aaaaac
//
LOCUS       DARGEY010000045        10938 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.045, whole genome shotgun sequence.
ACCESSION   DARGEY010000045 DARGEY010000000
VERSION     DARGEY010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10938
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.045"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            149..844
                     /locus_tag="SF008_001000"
     CDS             149..844
                     /locus_tag="SF008_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEG8233277.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLSEKFPNVESFSEALELNNQAKKSSKEIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDSTADVVSN
                     DDIEALIASLGQK"
     gene            841..2094
                     /locus_tag="SF008_001001"
     CDS             841..2094
                     /locus_tag="SF008_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEG8233278.1"
                     /translation="MIIPEIVAPAGNFTKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHKCGKKIYVTLNGFHLSSQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKALKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHVFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     ESKFESSKYEKEITTLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGS
                     FFKCKGKIVLNTPYEILAPLGDVIQTCDNELGKIYQKEDKYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            2095..2589
                     /gene="purE"
                     /locus_tag="SF008_001002"
     CDS             2095..2589
                     /gene="purE"
                     /locus_tag="SF008_001002"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEG8233279.1"
                     /translation="MNFVSILMGSKSDYETMKEAVKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEEKGAKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMSGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            2599..3135
                     /locus_tag="SF008_001003"
     CDS             2599..3135
                     /locus_tag="SF008_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HEG8233280.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPSSAKSQTAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            3147..4010
                     /gene="glyQ"
                     /locus_tag="SF008_001004"
     CDS             3147..4010
                     /gene="glyQ"
                     /locus_tag="SF008_001004"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HEG8233281.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCA
                     EIYKKNLNEAE"
     gene            3997..4722
                     /locus_tag="SF008_001005"
     CDS             3997..4722
                     /locus_tag="SF008_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEG8233282.1"
                     /translation="MKLSEIYNFLDQLSPFDIQESWDNSGILLGDRDSEISTVYLSLD
                     IDENIIKEASENSLIITHHPLIFKGLKDLYDKTYPRAFIKEMICKNISLISMHTNYDL
                     SHLNIYFTEEILGFKISFKDEFLIYVENSISFEALCDWVKKKLNLQILRVSNCGKKDI
                     KRIAICTGSGGDLISKVDADCFLSGDFKYHQALEALSNQISLIDLGHFESERYFSQCL
                     AKDLKNLPLQVIITVSKNPFQYF"
     gene            4732..5448
                     /locus_tag="SF008_001006"
     CDS             4732..5448
                     /locus_tag="SF008_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEG8233283.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSYEPKIDSINRTLKDAELKIGKINT
                     DLEKIDEEIKDIENQKVQNNAHISEFSAKIKELSKKSGAVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSV
                     YDKKTKLVGEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGE
                     EIVTCPHCGRILYKEQEEQN"
     gene            5445..6602
                     /gene="waaA"
                     /locus_tag="SF008_001007"
     CDS             5445..6602
                     /gene="waaA"
                     /locus_tag="SF008_001007"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HEG8233284.1"
                     /translation="MIFFYYFLTWAAFLFCAVFILLLSFLKSKYKTSLKSRFFLYKNL
                     HQEKADVHFHACSYGEVRSIKTLVLKFDSRITTITQTGFEYAKEFCKKVNYLAFENFL
                     PFWFKPCKVLVIFEAEYWLMLVFMAHIYKTKIILLNARISDKSYHSYQRFSFFYKKIF
                     SYIDEVFAQSELDKVRLESLGAKNVKIFKNIKANLEIKNNKIYTKPKEKLIIFASTHK
                     DEEELLLDHFKLEENEKLIIAPRHPERFKEVENLLLNKGLEFEKFSSLKDENKKFAKK
                     ILLLDALGELVNFYAISDVVVLGGSFIEGIGGHNPIEVAYFDNVLISGKFIHNQKALF
                     EEVENVYFCENLKDLNDKIHYLNLKVKISKKENLDLIIQTIQKGIDARKSL"
     gene            6583..7335
                     /locus_tag="SF008_001008"
     CDS             6583..7335
                     /locus_tag="SF008_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG8233285.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSHGKKVVVARALMS
                     DKARFNVIKTKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNAKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKAKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLTKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSYEIKIFDYYFKAELDNSFAKVGFEIKNLDF"
     gene            7403..8740
                     /gene="ffh"
                     /locus_tag="SF008_001009"
     CDS             7403..8740
                     /gene="ffh"
                     /locus_tag="SF008_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEG8233286.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     VTKELLTLIEEDVKQNGIGQKQFLNAIKVNLENILSVNGKNQGFVFASKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMNELKVVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLGGMANAVKDIDLDNSKEIIHIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            8806..9033
                     /gene="rpsP"
                     /locus_tag="SF008_001010"
     CDS             8806..9033
                     /gene="rpsP"
                     /locus_tag="SF008_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEG8233287.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            9036..9278
                     /locus_tag="SF008_001011"
     CDS             9036..9278
                     /locus_tag="SF008_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEG8233288.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTAISAYKSKDASSYRVTVKALE"
     gene            9271..9810
                     /gene="rimM"
                     /locus_tag="SF008_001012"
     CDS             9271..9810
                     /gene="rimM"
                     /locus_tag="SF008_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HEG8233289.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKN
                     TKEMLKIKHYNTSNSTVLFENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFD
                     ILECEVFEEDKRLGKVVDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNID
                     IEKRQIFCTQDAFLILENS"
     gene            9807..10511
                     /gene="trmD"
                     /locus_tag="SF008_001013"
     CDS             9807..10511
                     /gene="trmD"
                     /locus_tag="SF008_001013"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEG8233290.1"
                     /translation="MKFSFVSLFPNLMEFYFQDSILARAKEKKLFKLNFYNPRDFSKN
                     SYHKVDDYKIGGGAGLLMQAEPMYEVLKSIQEKKENPYFIFLNPSGKTFNQKDAKRLS
                     KKEHIVFVCGRYEGIDERVLEIFANEIFSIGDFILTGGELPALVMCDAILRNVNGVLG
                     NMESLKEESFENNLLEAPAFSKPFIFEKKNKKFYTPSEFLKGNHARIASLKTTLASCK
                     TKFFRPDLFLEHERKK"
     gene            10522..10878
                     /gene="rplS"
                     /locus_tag="SF008_001014"
     CDS             10522..10878
                     /gene="rplS"
                     /locus_tag="SF008_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEG8233291.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKIGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARIKELKK"
BASE COUNT         4100 a         1213 c         2058 g         3567 t
ORIGIN      
        1 ttaagattta attaatatat tttttttaat aaatttaaaa atttaattta aaaagattaa
       61 aaaataaaaa tttatatttt tgttttagat aaaattgatt ataattttga gcaattattg
      121 aaaatctaga tttaaaaaag ggaaaaaaat gactcaagaa gagcttgatg ctttgatgaa
      181 tggtgatgtt gatcttgatt cagagacaga agcagaggta aaaaccgaag aatcgaatac
      241 cgaagaagat gctttgatgt tagaagatgt caaaatagct gattacaaac ctaatcctag
      301 cgtggtatgg ccaccacccc caccaaatca ggagcataaa gttgtacatc agttagatga
      361 tgttacaaaa gatagcgagc ttaaagcaac ggaaatgatg gataagcttg aaagtattaa
      421 taattttttt gcggattctg aaagtttact caaagagata aataaagcaa tagaaaaaaa
      481 tattgatatt ttttctaaac ttagtgaaaa atttcctaat gtggaaagtt tcagtgaagc
      541 tttagaatta aacaatcaag ctaaaaaaag ttctaaggag attgtcggaa atcttcaaag
      601 cggacaagat gaagtgatga tggcaatgga tgcaatgcag tatcaagata tacatcgtca
      661 aaaaatcgaa cgtgttatta atgtaatgcg tgctttaagc cgttatatga gttccttatt
      721 tgaaggtaaa attgatgata aaaaacgtgt aagttctgca gtgcatattg aaggtgatag
      781 tactgctgat gttgtaagta atgatgatat agaagcttta attgcaagtt tagggcaaaa
      841 atgatcattc ctgaaatagt agctcctgca ggaaatttca caaaattaaa aattgcttta
      901 gcttatggcg cagatgcggt ttatgcgggt gtgaataatt tttctttaag atcacgcact
      961 gcaagagaat ttaattatga aagttttgaa gaagctatta aatataccca taagtgtggt
     1021 aagaaaattt atgttacttt aaatggtttt catttaagct cccaaattga aggtttaaaa
     1081 agacatattt taaaattgcg tgagatgaaa cctgatgctt ttattgtagc ttctgttgga
     1141 gctatgcgtc ttgttaaaga acttgcacct gaaatttctt tacatgtttc tactcaggca
     1201 aatattttaa attatttaga tgctcaagtt tataaggata tgggtgctaa aagggttgta
     1261 attgccagag aattagggct taaagacgct aaagctttaa aggaaaattg tgatattgaa
     1321 cttgaagctt ttgtgcatgg ttctatgtgt tttgcttatt cagggcgttg tttaataagc
     1381 tctgtgcaaa gtggaagaat gagcaatcgt ggatcttgtg caaatgactg tagatttaat
     1441 tatgagcttt atgctaaaaa tccagaaaat ggcactttat ttcgcttaga agaagatgaa
     1501 aatggtactc atgtgtttaa ttctaaggat ttaaatcttt gttcttatat agaaaaaatc
     1561 atgcaagaaa attgtatcag tgcttttaaa atagaagggc gtactaaaag cgaatattat
     1621 gttgcgctta caacaaggac ttataaaatg gccatacaag atgctttaga gagtaaattt
     1681 gagtcaagta agtatgaaaa agagattact acacttaaaa atcgtggttt tacagatggt
     1741 tatcttgttt cgcgtccttt agaaaaaacc gacacgcaaa atcataatac aagcatagaa
     1801 gaaggttctc atcaagtgca tgctataagc gaagatggaa gcttttttaa atgtaaaggg
     1861 aaaatcgttt taaacacgcc ttatgaaatt ttagcccctt taggcgatgt gattcaaact
     1921 tgcgataatg aactaggtaa aatttatcaa aaagaggata aatattttat agagtttaaa
     1981 aaactcattg ctaaaaacaa taaagaattt agcgaaattc atagtggcaa tgaacatgaa
     2041 atccaattac caaataaaat cagtgcatta agttttttaa gaaaggaaat atagatgaat
     2101 tttgtttcta ttttaatggg aagcaagagt gattatgaga ctatgaaaga ggctgttaaa
     2161 actttagaaa gttttggggt aaagtatgaa cttatcatct catcagctca tcgtagtcca
     2221 aaaagaacaa aagagtatat tgcaaatgct gaagaaaaag gtgcgaaagt ttttatagca
     2281 gcagctggaa tggcagcgca tttagctgga gctgttgcag cttatacaac aaaacctgtt
     2341 ttgggagtgc ctatgtcagg aagcaatctt gcaagtatgg attctttatt ttctacggtg
     2401 caaatgccta gtggaattcc tgtaggaact ttagctattg gtaaggctgg agcgatcaat
     2461 gctgcttatt tggctatgca aattttagct atttatgatg ttgatttagc acaaaagctt
     2521 aaagaagatc gtcttgaaaa agaaaaaaaa cttgtatctg attcaaaaga agtagaagtt
     2581 ttattataag ggataaaaat gcaaacctat cttgaacttg aagaattttg taaacttgtg
     2641 catttaaatg aagatgtggt taagggtatg atggccaatg gggctttaaa ttttaaagaa
     2701 gaagagggta aaatttacat cgaagctcat caaggtactt ttagtgtagt acctagttct
     2761 gcaaaatctc aaactgcaat ggtaaattca atgactttag caggagaaag ttttgttgaa
     2821 aaaacaatag gaactatttt aaatttgcat gaaaaagttt tagatgctaa agatgaaaca
     2881 cttgaagcat taaaaaatga gaataaattt ttaaaagacg ctctttattc tatgcaagaa
     2941 ctttatgatg aagatagaaa aactatagaa accttaaaca atgagctaaa acatgcgcgt
     3001 gaagagatag aatttctcaa gcgtaaatat aaattaatgt ggagtaaaac cgcagaaatt
     3061 tttggagcta agacagagcc tgatttggaa atgaataaaa atttagaaaa acctattgaa
     3121 aatatggaac aataaagaga gatgcaatga ctttttcaca aatgatactt aatttacaaa
     3181 attattggca agagcaaggt tgtgcgatta tgcaacctta tgatatgcca gcaggtgcag
     3241 gaacctttca tccagcaact tttttaagaa gtttaggaaa aaaaccttgg gcagctgctt
     3301 atgtggctcc aagtagaagg cctactgatg gacgttatgg tgaaaatcct aatcgcttag
     3361 gtgcttatta tcaatttcaa gttttgatta aacctagtcc tgataatatc caagaattat
     3421 atcttaaaag tcttgaaaat ttgggttttg atttaaaaag tcatgatatt cgttttgttg
     3481 aagataattg ggagagtcca agtttgggtg cttggggttt aggctgggaa gtatggcttg
     3541 atggtatgga agtcactcaa tttacttatt ttcagcaagt tggcggtata gcagtagatt
     3601 tagtaagtgc tgaaattact tatggtcttg aaagaatagc catgtatctt caaaatgttg
     3661 ataatgttta tgatatagtt tggagtgaat ttaatggaga aaaaattaaa tacgcagatg
     3721 tgcataagca aagtgaatat gaatttagta aatacaattt tgaagtaagt gatgttaaga
     3781 tcttaaatga gcagtttgaa aattcttaca aagaatgtaa aaatatttta gaacaaggac
     3841 tagctttacc tgcttatgat tattgtatgc ttgctgcaca tacttttaat cttttagatg
     3901 caagaggagc aatttctgta gcacaaagac aagattatat gttaaaaatt cgtgaacttt
     3961 caaaaaattg tgctgaaatt tataagaaaa atttaaatga agctgagtga aatttataat
     4021 tttttagatc aattaagtcc ctttgatatc caagaatcat gggataatag tggaattttg
     4081 cttggagata gggatagtga aatttcaact gtttatttaa gcttagatat tgatgaaaat
     4141 atcattaaag aagcgagtga aaattcttta attatcacac accatccttt gatatttaaa
     4201 ggtttaaaag atttatatga caagacttat cctagagctt ttattaaaga aatgatttgt
     4261 aaaaatattt ctttaatcag catgcataca aattacgatt taagtcattt aaatatttat
     4321 tttacggaag aaattttagg ttttaaaatt tcttttaaag acgaattttt aatttatgta
     4381 gaaaattcta tatcttttga agctttgtgt gactgggtga aaaaaaagtt aaatttacaa
     4441 attttacgtg taagcaattg tggtaaaaaa gacattaagc gtattgctat atgtactgga
     4501 agtggcgggg atttaatttc taaagtagat gcggattgtt ttttaagcgg agattttaaa
     4561 tatcatcaag ctttagaggc acttagtaat caaatcagtc ttattgattt gggtcatttt
     4621 gaaagtgaga gatatttttc tcaatgttta gcaaaagact tgaaaaattt gccgctacaa
     4681 gttataataa cagtttcaaa aaatccattt caatattttt aaggaaaata aatgaataaa
     4741 tatctcgaac aattagtgct tttatcaaaa atagatcaag aaattgatag ttatgaacca
     4801 aaaatagaca gtattaatag gactttaaaa gatgctgagt taaaaatagg aaaaatcaac
     4861 acagatttag aaaaaatcga tgaagaaatc aaagatatag aaaatcaaaa agtacaaaat
     4921 aatgctcata tttctgagtt ttcggcaaaa attaaagagc tttctaaaaa aagtggtgca
     4981 gtaaaaacag aaaaagaagc taatgcttta aaaattgaag aagatattgc aaaagagcaa
     5041 ttagacgctg caaatgatga aattgtaaga ctggataaaa ttttagagaa taaagaaact
     5101 tataaaaaag aacttgaaga agaaaaaatt aaacaagagc aaaatattaa tgagattaga
     5161 gtaagcatta aatctgaaat ggaagttctt gaaaaagata gaatgagtgt ttatgataaa
     5221 aaaaccaaac ttgtgggcga gatgaatcaa aaagttttaa gtttttatga aaaaattcgc
     5281 aaatgggcga aaaatactgc tgtagttcct gttaaaaaac aagcatgcta tggatgtttt
     5341 atgaaaattt acgataagac ttatctgtct gttgtaaaag gtgaagagat tgtaacttgc
     5401 cctcattgtg gaagaattct ttataaagag caagaagaac aaaattgatc tttttttatt
     5461 attttttaac ttgggcggca tttttatttt gtgccgtctt tattcttttg ctttcttttt
     5521 taaaatccaa atacaaaact agtttaaaat cccgattttt tctttataaa aatttacatc
     5581 aagaaaaagc tgatgtacat tttcatgctt gttcttacgg ggaggtaaga agtattaaaa
     5641 ctttggtttt gaaatttgat tcaagaataa ctactattac tcaaacaggt tttgaatatg
     5701 caaaagaatt ttgtaaaaag gtaaattatc ttgcttttga aaattttttg cctttttggt
     5761 ttaagccttg taaggttttg gtaatttttg aagcagaata ttggcttatg cttgttttca
     5821 tggcacacat ttataaaact aagattattt tgcttaatgc aagaatatct gataaatctt
     5881 atcattctta tcaaagattt tctttttttt ataaaaaaat tttttcttat attgatgaag
     5941 tttttgctca aagtgaatta gataaagtaa gacttgaaag tttgggagct aaaaatgtta
     6001 aaatttttaa aaatattaag gcaaatttag aaattaaaaa taataaaatt tataccaagc
     6061 ccaaagaaaa acttatcatt tttgccagta ctcataagga cgaagaagag cttttgcttg
     6121 atcattttaa actagaagaa aatgaaaaac tcattatcgc cccacgacac cctgagcgtt
     6181 ttaaagaagt tgaaaatttg cttttaaaca aaggtttgga atttgaaaaa tttagttctt
     6241 taaaagatga aaataagaaa tttgctaaaa aaattttgct tttagatgct ttaggagagc
     6301 ttgtaaattt ttatgcaatt tctgatgttg ttgtgcttgg aggttctttc atagaaggca
     6361 taggaggaca caatcctata gaagtggcat attttgacaa tgtattaatc agtgggaaat
     6421 ttattcataa tcaaaaggct ttatttgaag aagtagaaaa tgtatatttt tgcgaaaatt
     6481 taaaagattt aaatgataaa attcattatt taaatttaaa agttaaaatt tccaaaaaag
     6541 aaaatttaga tcttattata cagaccatac aaaagggaat tgatgcaaga aaaagcttat
     6601 aaactcttag ctttgcaaga aaaaatttca aatcgtgaag ctaaagattt gattgataag
     6661 ggttgtgttt tttcacatgg aaaaaaagtt gtggttgcta gagctttgat gagcgataag
     6721 gcaagattta atgtgataaa aaccaaaaat cctcaaatta tttttgaaga tgataagatt
     6781 attgctatta ataaacctta tgcttatgtg agtgaagact tggagaaaaa atttaatgcc
     6841 aagcttttaa atcgtttaga caaagaaaca agcggtgtga ttttgctttg caaagatgaa
     6901 gattttagaa agctttgtat agaagaattt aaaaaacata gagtttataa aagttatatt
     6961 gcggttttag atggggtttt ggctgaagag gttgaagtga atgagcctat ttttaccata
     7021 aaagcaaaag gcggggcgtt aagtaaagtt tcaaaagatg gtttaagtgc cttaagcatc
     7081 attactccta ttatgatgca gtcaaaaaaa accttaacaa aaatagtcat tcaaacaggt
     7141 agaactcatc aaatcagagt gcatgctaaa tttataaaac atggcgttgt aggtgatgaa
     7201 aaatatgcta aaatttcaag cgatagaatg tatttacata gttatgaaat taaaattttt
     7261 gattattatt ttaaggctga gctagataat agttttgcaa aagttggctt tgagataaaa
     7321 aatttagatt tttaaagcca tttaagaaaa aattttgtat aatgcaaggt ttaatttaaa
     7381 aattttatag aaaggtgata aagtgtttga gttagttagc gaatctttta aatcagcgat
     7441 taataaatta cgttttgttg atgatgaaaa agcacttaag aacgctttag aaaccttaaa
     7501 aaaagctctt ttaaaagcag atgttcacca taaggtaact aaagagcttt tgactttgat
     7561 agaagaagat gtaaagcaaa acggaatagg tcaaaaacaa tttttaaatg ccattaaagt
     7621 aaatttagaa aatattttaa gtgtcaatgg caaaaatcaa ggttttgttt ttgcttctaa
     7681 acccccaaca gtagttctaa tggcaggttt gcaagggggc ggtaagacta caagcactat
     7741 caaacttgca aattatttaa aattacgcaa taaaaaagtt ttagttgcag cttgtgattt
     7801 acagcgtcta gcggcagtgg agcagctaag acaactttgt gaagctaatg aaattgaact
     7861 tttctttata gaaaatgaaa aagatcctat tagggttgct aaagaggctt taaaaaaggc
     7921 tgaaagttct atggtggatg ttttgcttgt ggatactgct ggacgtttgg ctatagatga
     7981 ggctttgatg aatgaattaa aagtagttaa ggatgtttta aatcctgatg agattttcta
     8041 tgttgctgat gcaatgagtg gtcaagatgg ggttaagact gcggctagtt ttaatgaagt
     8101 tttaggtatc agcggggtaa ttttatcaaa atttgatgca gatactaaag gtggagtagc
     8161 cttaggtata gcaaaacaaa tcggtattcc tttaagattt attggtgtgg gtgaaaaagt
     8221 agcagattta gaagttttta taccagatcg tatagtaagt cgtattatgg gtgagggtga
     8281 tttggcaact ttagctgaaa aaactgctgc gattattgat gaaaaagagg ctaaaaaact
     8341 caatcaaaaa attaaaaaag gggagtttaa ttttaatgat tttcttaatc aaatggaaag
     8401 tattaaaaaa ttgggaagta tgaagtcttt aatcggtatg ataccaggac ttggtggaat
     8461 ggcaaatgcg gtaaaagata tagatttgga taattctaaa gaaattatac acattaaagc
     8521 aatgatttct tcaatgactc caaaagaaag agaaaatcct gatttattaa ataatgctag
     8581 aaagcgtcgt atagcagagg gagcaggtct ttctcaggta gaagtcaatc gttttttaaa
     8641 acaatttagc aatgcagcaa aacttgcaaa aagattttca ggtaaaaaag gaatggagag
     8701 tttgacacaa atgatgagtc aagctagaag acaattttaa attttattta taaatacttt
     8761 ttatagtatc tataaataaa atttttaatt ttttaaggag tataaatgac agttattaga
     8821 cttacaagaa tgggtagaac caaaagacca ttttatcgta ttgtagttac ggacagtaga
     8881 aaacgtcgtg atggtggttg gatagaaagt attgggtatt ataatcctat ggtagaacct
     8941 gaagtaatta aagttgatgc agagcgttta gcttattgga aaagcgttgg tgcaaaactt
     9001 agcgataaag ttgcttctat cactagcaaa taatcatggt agagaatttt cttagagaat
     9061 acgcaaaatt aattgcagat tatcctgaac agattgatac tcaaaaaatt gaattaagtg
     9121 aaaatttttt tgagattgtt ctttttgcac ataaggttga tacaggtaag cttataggta
     9181 aaaatggaaa aatgatcaat gctataaaaa ctgcaatctc tgcttataag agcaaggatg
     9241 caagttctta tagagtaacg gtaaaagcac ttgagtgaaa aagattttgt tcaagttgca
     9301 aaacttggta aaactgtggg tcttaagggt tatgtaaaat tgcataacct gagcgacttt
     9361 tcttctcaat ttaaaaaaga tgctactttt tttataaaaa acactaaaga aatgttaaag
     9421 attaagcatt ataatacaag caattctact gttttatttg aaaattatga agatatagaa
     9481 aaggccaaag aattaactaa tcttattctt tttcagagta tcgagaaaag tagacaaact
     9541 tgtaaattaa aaaaagatga gtttttttat tttgatattt tagagtgtga agtttttgaa
     9601 gaagataaga gattaggtaa agtggttgat atcttggaaa ctggagcttc ttatttattt
     9661 gaaattcaaa gtgatgaaaa atgggttgaa aaaaaatatc ctaaaatatt ttttattcca
     9721 tatttagata aatttgttaa aaatatagat atagaaaaac gacagatttt ttgcacgcaa
     9781 gatgcttttt taattttaga aaattcatga aatttagctt cgtttctttg ttccctaatc
     9841 ttatggaatt ttactttcaa gattctatac ttgcaagagc aaaagaaaaa aaacttttca
     9901 aacttaattt ttataatcca agagattttt ctaaaaattc ctatcataaa gtcgatgatt
     9961 ataaaatagg tggtggagct ggacttttga tgcaagctga acctatgtat gaggtgctaa
    10021 aaagtattca agaaaaaaaa gaaaatccct attttatttt tttaaatcca agtggtaaaa
    10081 cctttaatca aaaagacgcc aaacgcttaa gtaaaaaaga acatatagtt tttgtatgtg
    10141 ggcgctatga aggtatagat gaaagagtgc ttgaaatttt tgcgaatgaa atttttagta
    10201 taggggattt tattttaaca ggaggagaat tacctgcgct tgtaatgtgt gatgcgattt
    10261 taagaaatgt taacggggtt ttaggaaata tggaaagctt gaaagaagaa agctttgaaa
    10321 ataatttact cgaagcgcct gctttttcaa aaccttttat ttttgagaaa aaaaataaaa
    10381 aattttatac tccttcagag tttttaaagg gtaatcacgc tagaattgca agtttaaaaa
    10441 ctactttggc gtcttgcaaa acgaaatttt ttcgtccaga tttattttta gagcatgaac
    10501 gcaaaaaata agggattttt tatgaaaaat aaatatatag aacaatttga agcaaaacaa
    10561 attgaaggta aaaatgttcc agattttcgt gctggtgata ctttaaagct tgcaattcgc
    10621 attaaagaag gggataaaac aagaatccaa aattttgagg gtatttgtat tgctagaaga
    10681 ggtaatggcg taagtgaaac ttttatcgtg cgtaaaattg gcgctaataa tgttggcgtt
    10741 gagagaattt tccctattta tagtgaaagt ttagaaagta ttactgtttt gcgtcgtggt
    10801 cgtgtacgcc gtgcaagatt attctactta agagatagac gtggtaaagc agcgcgtatt
    10861 aaagagctta aaaaataatt tataattatt ttctattata agtctaacaa ttaaataatt
    10921 ataattaatt tataatta
//
LOCUS       DARGEY010000046        10923 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.046, whole genome shotgun sequence.
ACCESSION   DARGEY010000046 DARGEY010000000
VERSION     DARGEY010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10923)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10923)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10923
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.046"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(7..663)
                     /locus_tag="SF008_001015"
     CDS             complement(7..663)
                     /locus_tag="SF008_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HEG8233292.1"
                     /translation="MSKIDEISSKSKASILEHLKKAYKETDFTRIESIDPVEHIQTTQ
                     DMLAEMKQKMSDNKYIVENATKDTLEEKINEIVARYGFKSMIYGADLNLNLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCIVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAHIIIY
                     "
     gene            complement(656..2095)
                     /locus_tag="SF008_001016"
     CDS             complement(656..2095)
                     /locus_tag="SF008_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HEG8233293.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRSKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANNVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWAVQNFASVLPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            complement(2092..2832)
                     /locus_tag="SF008_001017"
     CDS             complement(2092..2832)
                     /locus_tag="SF008_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEG8233294.1"
                     /translation="MMKKVYFYATCLGTAAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKNRPEFSKV
                     KDFSSRVIELSQYLDEVLKVDYEDKGAPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELVELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGERL"
     gene            complement(2952..4634)
                     /locus_tag="SF008_001018"
     CDS             complement(2952..4634)
                     /locus_tag="SF008_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HEG8233295.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGIKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTVFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIVCIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNITTGILSPSITGIGEAKPLSLALGVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWVTLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIVLIGIWTCIIAFFLQGIIPEVIVK"
     gene            complement(4806..5375)
                     /gene="cdtC"
                     /locus_tag="SF008_001019"
     CDS             complement(4806..5375)
                     /gene="cdtC"
                     /locus_tag="SF008_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
                     /protein_id="HEG8233296.1"
                     /translation="MKKIITLFFIFITLAFATPTGDLKDFTEMVSIRSLETGIFLSAF
                     RDTSKDPIDQNWNIKEIVLSDELKQKDKLADELPFGYVQFTNPKESDLCLAILEDGTF
                     GAKSCQDDLKDGKLETVFSIMPTTTSAVQIRSLVLESDECIVTFFNPNIPIQKRFGIA
                     PCTLDPIFFAEVNELMIITPPLTAATPLE"
     gene            complement(5386..6183)
                     /gene="cdtB"
                     /locus_tag="SF008_001020"
     CDS             complement(5386..6183)
                     /gene="cdtB"
                     /locus_tag="SF008_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HEG8233297.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRMQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            complement(6180..6986)
                     /gene="cdtA"
                     /locus_tag="SF008_001021"
     CDS             complement(6180..6986)
                     /gene="cdtA"
                     /locus_tag="SF008_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HEG8233298.1"
                     /translation="MQKIIVFILCCFMTFFLYACSSKFENVNPLGRSFGEFEDTDPLK
                     LGLEPTFPTNQEIPSLISGADLVPITPITPPLTRTSNSANNNVVNGINPRFKDEAFND
                     VLIFENRPAVSDFLTILGPSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYP
                     NDFAMIKNAKTNTCLNAYGNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQ
                     APITNLYGDFHKVFKIFTVECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
     gene            7099..7332
                     /locus_tag="SF008_001022"
     CDS             7099..7332
                     /locus_tag="SF008_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HEG8233299.1"
                     /translation="MYLKHLYFSISQIFNFYKEGFKNLTLGKTLWKIIFIKLFVMFVI
                     LKLFVFDVNFNSIFKSDKEKSTFVLKNLTLEGK"
     gene            7333..8895
                     /locus_tag="SF008_001023"
     CDS             7333..8895
                     /locus_tag="SF008_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HEG8233300.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKGFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQSFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQALKDYKLAKENNDTIAMANHKSILETHFKDFGYGYLEKPSDTIPPVALTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIMLTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            8895..10019
                     /gene="cydB"
                     /locus_tag="SF008_001024"
     CDS             8895..10019
                     /gene="cydB"
                     /locus_tag="SF008_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HEG8233301.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFINNINDENIKIRAMKKLMINSILFL
                     PFFLGFLAWIFLKDGFSVDANGVVSMSANLYLYNFLNQMIFAVLLAIGVILVLLGMFQ
                     GAKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLSDLQSSLTLKNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(10213..10908)
                     /locus_tag="SF008_001025"
     CDS             complement(10213..10908)
                     /locus_tag="SF008_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HEG8233302.1"
                     /translation="MKTIGIIGGMSFESTITYYKTINQAINDKLKSLNSAKILLYSVN
                     FEEIENLQSQDKWQEAAQILTQCAKKLELAGANFIIIATNTMHKVFDEIQQNINIPIL
                     HIAKSSAKALKQENIQKIGLLGTKYTMTQDFYKKMLIEENISVITPSDEDIKIVNDII
                     FNELCKGEIKQDSKEKYLNIIKKLQEKGAKGVLLACTEIGLLISKNDTNIKIFDTSLI
                     HALDAANEALKDL"
BASE COUNT         3498 a         1790 c         1758 g         3877 t
ORIGIN      
        1 atagaatcag taaataataa tatgtgcaat ttgtggccca tgaacaccaa aaacagtgat
       61 aagttctata tctgctgttc ttgaaggccc tgctataaat aagatattag taggtaaaat
      121 ttcattttct ttttttacta aatttaaagc ttcgctaaga cttttaacaa cattttcttt
      181 tttaagcaat actatgcaaa gtttaggtgc aaggcttagc attctaggtt gggttttact
      241 tgaaggtata agtgcaactc cgtgagagct tacccctgct cttgcgtgaa tgatggaaaa
      301 atcactatga aaaacttcag atcttaaatt ttcgatttct ttatcaaagc aaatcttttt
      361 ttctgctttg atttgttcta aatttaaatt taaatccgct ccataaatca tacttttaaa
      421 gccatatctt gcgacaattt cattgatttt ttcttctaag gtatctttag tcgcattttc
      481 aacgatgtat ttgttatcgc tcattttttg cttcatttct gcaagcatat cttgggtggt
      541 ttggatatgt tctacaggat ctatactttc aatacgcgta aagtctgttt ctttgtaagc
      601 ttttttaaga tgttctaaaa tacttgcttt acttttgctt gaaatttcat cgattttact
      661 catagcttac tccttctagt ttttgcactt ctttataaag atccatttta atttgaggta
      721 attctttaaa agcgtaccat tttttaatca caggcaaaac gcttgcgaaa ttttgcactg
      781 cccagttgaa ataatgtgct tttgaaagtg aaaaacgcca tttatctcca ttggttgcga
      841 tatttttaaa ttgtttaaaa gcaaaggctt ctagggcatt gtgatgaaca ttgtttgctc
      901 ctaaaggtgg atttttacct tgtcctattt tatcgcatct taatttgcga ataagatcag
      961 ccaaaggaat ttgcactgga caaacttcag aacaacgccc gcaaagtgaa cagaaattca
     1021 aaatatctcc tgtatgatct ataccaaaaa tattaggact gattacttct cctataggtc
     1081 ctggataagt ggtttgatag gcatgtccgc cgatttgatc ataaacaggg caaaaattca
     1141 tacaagcccc acatcgaata caacgcaaag cctcataata atcctcatga gctaacattt
     1201 tagagcgatt gtgatcaaat aaaatcacat gtacttcttt agggccatct aaatccccat
     1261 tttttctagg gcctgtaatg atattgttat aagttggtat aaattgtcct gtggctgaag
     1321 gagtgagcaa agaaaccata gtagccgcat cttcaaagct ttccatgact ttttctatgc
     1381 cgcaaagtgc gatatgaata tcaggtgctg tagtgcacat tctaccgttt ccttcatttt
     1441 ctataagcca aaaagcccct tctcttgaca tggcaaaatt gaccccacta agtccaagtt
     1501 ttaagccttc aaaatctttt cttaaatgtt ctctagctac cgcatttaaa ctttcaggtt
     1561 catcgttttc taaatttgct cctaattttt ctttgaaaat ttctccgatt tcatgacggt
     1621 ttctatgtat ggcaggtaca actatatgta aaggaggctc ttcgttaagt tgcaaaataa
     1681 gctctccaag atcggtttct atagctttta accctttttt ttctaggtag tgatttaggc
     1741 ctatttcttc gcttgccata gatttacctt ttaaaagctt ggtgatattt ttttctttca
     1801 tgatttcata gacgatttca caggcatctt catcactact tgcccaatgc actttaatgc
     1861 cattttttgt agcatttttt tcaaattcta aaagcctttc ttctaaactc attaaggcat
     1921 tgtttttagc ttgtttagct ttagatctta aaccctgcca gtctttaaat ctagcatcaa
     1981 taacattgag tctatttttt tgtaaagtat gcatggcagt cattaaattt tcttgcattt
     2041 gtttgtcatt gagtttaatt tgaacgattt gttcgtgagg aattttttga ctcatagtct
     2101 ttctccttct aagcgtttaa gtaaaaagtc atataaatgt atgcctttta tatctaaacc
     2161 cattcttttc attgtaccat ctatatttaa aagacaacct ccatcgccac tgatgagata
     2221 ttttgcaccg ctattttgta tatctttaat tttacttctt accatagcat ttgaaatttc
     2281 aggctctttt actgaaaaag ttccgccaaa accacaacat tcttcttcgt attgaagttc
     2341 tactaattct acatttttta gttttttgat aagattcttg cttgcttgta tgcttttttg
     2401 cactcttaaa gcatggcaat tagaatgcca agttactttt ataggtgcac ctttatcttc
     2461 ataatctact tttaaaactt catcaaggta ttgtgaaagt tctataaccc tagagctaaa
     2521 atctttgact ttagaaaatt caggtctgtt tttaaaaagt tctttatagt catgactcat
     2581 catacccgca caagaaccac ttggcacaac gatgggataa tctttatcaa ataaatctac
     2641 attatataaa gcaatctcac gactttcatc gaaataacct gagttaaaag aaggttgagc
     2701 acaacaggtt tgattttttt taaaaatcac ttcaatacct tcacgcctta aaagttttat
     2761 tgcatttaaa acgctttgtt gcatagcagc agttcctaag catgtggcgt aaaaatacac
     2821 ctttttcatc atctctcctt ttgggataat ttaggataaa tattctaatc ctgtaaaaat
     2881 aaaagcaaag taaaatttcc aacaaatatt ctaaaaatga atatttgttg aaataaaact
     2941 taaattttta attatttcac tataacttca gggatgattc cttgtaagaa aaaagctata
     3001 atgcaagtcc aaattcctat taaaacaata aaagctacag aatattttaa tgtgaatttg
     3061 aaaagatcag attcttttcc cacaagtcca accgctgcac aagctatagc aatgctttgt
     3121 ggactgatca tctttccaac aaccccacct actgaattag ctgctaaaaa taaagcttcg
     3181 ctaataccta gtttttgagc gcttacttgt tgcaaggttc caaaaagtaa attagcactt
     3241 gtatcagagc ctgttaaaaa tacccctatc cagccaatga ttggtgaaaa gaaagaaaaa
     3301 gcatcacctg tgtgtgcaaa agcaagtcct aaagtagtgc tcataccact atttttagag
     3361 ataaaagcaa aggccacaac caaacctatg gtgatacaag gtatagccat ttcttttaag
     3421 gtaacccaaa agcattctgc agcatcttcg gctttgattt ttaaaatagc tatagttaga
     3481 aaagcggcaa gtaaaatcgc tgttcctgct tgagctacgg tttttccatt gattaaatct
     3541 acacccaagg ccaaagataa aggcttagct tctcctatgc ctgtgataga agggcttaaa
     3601 attccagttg tgatattgct aaattgtaaa gtaatacttg tatagcttaa aattccgtcc
     3661 ttgtcaaaga gggctttaaa ccaaggttgt gtccaaatga taatacaaac aatgagtaaa
     3721 ataaaaggtg accaagcttt taaaatttga ttaaaactta aggtgttatc ttgagtgaaa
     3781 ttgctttcat tgtcaaatct aaaaatattt tttggtttcc aaaatttcaa aaatacagtc
     3841 gtaactgcta aagaaaccac agctgaaata atatcaggta attccgctcc taggtgattt
     3901 gagcttaaaa attgagtagt tgtaaaactt agcgccgcaa ctaaaatagc tggaaaagtt
     3961 tctttaatac ctttaaatcc atccattaaa aaaactatga aaaaaggtat agtaaggctt
     4021 aaaggaacta gcattctacc taccatggca gaaactgaat gctgttctat gccgacaaga
     4081 tttgccatag caataatagg aattcccacc gcaccaaaag caacaggagc ggtatttgcg
     4141 ataagacaaa gccctgcagc ttgtaaagga cgcaagccaa gtcctactaa aagtgcagcg
     4201 gttatagcca cagggccacc aaaacctata gcaccctcta aaaatgaacc aaaacaaaaa
     4261 cctattaaaa tcacttgaat tctatgatct ggagtaatgc tcatcacgct ttttttaatg
     4321 atttcaaaag aacctgactt gatagaaagt ttgtaaagaa agattgccgc gatgataatc
     4381 caagctatag gccacatacc atttgtaaag ccttgaataa aacttgcacc cactaaattc
     4441 caaggcattt tataggcaaa taaagctact aaagtagcaa gtataacagt taaaaaacct
     4501 gcttgatagc ctttaagttt taaaacaacc aaacaaacta aaaaacatag tataggtaaa
     4561 aatgccacta aagcacttag ccaaatgttt gaaaaagggt cataaatttg ttgccatgtt
     4621 aaaatttgtt ccaatttttc ctccttgata attattatgt ataaatttat tgtaacaaaa
     4681 aattaaatta aaataaaaga attatagagt aaggtaaatt acattgtatt attattaatt
     4741 attttgtgta ttttagtaat atcataaata ttaaataaat ataaaaatag aacaagataa
     4801 aaatcttatt ctaaaggggt agcagctgtt aaaggtgggg ttataatcat tagttcattt
     4861 acttcagcaa aaaaaatagg atctagggtg caaggggcta ttccaaagcg tttttgtata
     4921 ggaatatttg gattaaaaaa agttactata cattcatcag attccaaaac taaagaacga
     4981 atttgcacag ctgaagttgt tgttggcatt atagaaaata cagtttctaa tttaccatct
     5041 tttagatcat cttgacaaga ttttgctcca aaggttccat cttctaagat ggctaaacaa
     5101 agatcgcttt cttttggatt tgtaaattgc acataaccaa aaggaagttc atcagctaat
     5161 ttatcttttt gttttaactc atcgcttaaa acaatttctt taatattcca attttgatca
     5221 ataggatctt ttgaggtatc cctaaaggcg cttaaaaaaa ttcccgtttc taagcttctt
     5281 atagaaacca tttcggtaaa atctttcaaa tctccagtag gagttgcaaa ggctaaagtt
     5341 ataaatataa aaaacaaagt aataattttt ttcatattaa atgtcctaaa attttctaaa
     5401 atttactgga aaatgatctg aaactatatg agatcttaaa cttgcaagca ttaaaattgc
     5461 agctaaaagc ggtggagtat aggtttgttg tctatttgaa tttcctgtaa ttgcataatc
     5521 aagagtccct ccgcttgctt gagttgcgct agttggaaaa accactctaa ttctatttgc
     5581 taattctcta tccactgtac ttgttatagt agaaggatca cggttaaaat cccctgctat
     5641 catccagtta acttgaggca tatttgcaaa atgtgcatct acagctgtga taattgctcc
     5701 tacatctgtt cctccattag ctaaagcatg gatattgaaa aaagcatcat ttccattgcg
     5761 aattcctata atgggtcttg aaactgtagt aggtggaggt aaaacaatca cttcttcagc
     5821 ttgcattctt gaaactatag ctaaatttac acgattagct cctacatcaa cgcgagaata
     5881 ataaataaaa accctatcag gccttgaaag agttcctaaa ttccactcat attcatcaat
     5941 aggtgttcca ccttgttgca catggcgtcc tgttggagtg gctgttcttg gtaaagttcc
     6001 tgcttcttgt atcattaaga tatctaaggg gtttgctcca cttacaagtt gtcttacgct
     6061 aacactccat ttgctttctg tggctgcgga tgagccttgc aaattccaag tgccaacatt
     6121 aaaattttct aaatttgcaa aagcaaggtt aaaagataaa aataaacata taattttttt
     6181 catcgtacct ctccttggcg atataaaggt tttgcagtaa aaggcggagt agttaaaaac
     6241 cattgttgat caaaattatc tttttttgca cactctacgg taaaaatttt aaaaaccttg
     6301 tgaaaatcac cataaagatt tgtaataggt gcttgtatgc attttccatt tcctaaattt
     6361 ttaatttgaa ccgctgtatt gctcataggg ataagtttcc acatttgtgc gtgattgctt
     6421 gcatcgcaag gataatggac aattccatta ccataagcat taagacaagt attggttttg
     6481 gcatttttaa tcattgcaaa atcattagga taaagcaaaa gttgccaaac tctagcatcg
     6541 ccaaatcctt tactatcgat taaagtatag ccccaaatcc aatttccttg tgctaaagcc
     6601 caaaccgtta aagctgctcc gctagggcct aaaatggtta aaaaatcaga aaccgcaggg
     6661 cgattttcaa aaattaaaac atcattaaaa gcttcgtctt taaagcgagg attgatccca
     6721 tttactacat tattgttggc actattgctt gttctagtta aaggtggggt aataggagta
     6781 ataggtacta aatcagcacc gctaattaaa cttggaattt cttgattggt aggaaaagta
     6841 ggttcaagtc ctagttttaa aggatcagta tcttcaaatt cgccaaatga acgccccaaa
     6901 ggatttacat tttcaaattt agaagaacat gcataaagaa aaaaagtcat aaaacaacat
     6961 aaaataaaaa ctataatttt ttgcattaaa aaccttgata tgtatttaaa tttttaagaa
     7021 aataataaca taaatttcat tataattttc cgctttttaa aaatgtttta ttttgttgtt
     7081 tttaaaggta gaatttacat gtatcttaaa cacttatatt ttagcatctc tcaaattttt
     7141 aatttttaca aagaaggttt taaaaattta actcttggaa agaccctttg gaaaattatt
     7201 tttatcaaac tttttgttat gtttgtgatt ttaaaacttt ttgtttttga tgtaaatttt
     7261 aattctattt ttaaaagcga caaagaaaaa agcacttttg tactcaaaaa tcttacactc
     7321 gaaggaaaat aaatgaacga acttagtagc gttgattggt caagagcgca gtttgcttta
     7381 actgcacttt atcatttttt gtttgtgcct ttaaccttag gcttgtcttt tatgatcgct
     7441 atcatggaaa ccatctatgt aaaaactaaa aatgaaagat ggaaaaaaat caccaaattt
     7501 tggctttcat tatttgctat aaattttgct atcggtgtag ctacaggcat tataatggaa
     7561 tttgaatttg gaacaaactg ggcaaattat agctggtttg tgggtgatat ttttggtgca
     7621 cctttggcgg ttgaaggtat tatggcattt tttttagagg ctactttttt tgcagttatg
     7681 ttttttggct gggataaagt aagcaagggt tttcacttac tttcaacttg gtgtgtggct
     7741 ataggaagta atctttctgc tttttggatt ttagtggcaa atggttggat gcaatatcct
     7801 gtaggaatga gctttaaccc tgacacagca agaaatgaaa tgcaaagctt ttttgaagta
     7861 gcactttctc ctgtagctat ttcaaaattt ttacatacca taggcagtgg ttatgtgatt
     7921 tcagctttat ttgtaatggg aatttcagct tggtttatgt taaaaggacg ccatattatc
     7981 gaggctaaaa aaagcttagt tgtaggagct agttttggtt tggtttgttc aatctttttg
     8041 tttttcagcg gagatgaaag cgcttaccgt gtaactcaaa ctcaacctat gaaacttgca
     8101 gctatggaag gggtttatca aggtgaacat cgtgcaggac ttgtaccttt tggaatttta
     8161 aatcctaaaa aaaccataga taataacgaa agtgtgtttt tatttgacat tactatacct
     8221 tacgctcttt ctatattagg aaaccgtgat ccaaattctt ttgttccagg aattgaagat
     8281 ttgatctatg gaaatgaaag caaaggtata gaacctatgc aaaatcgtat cgatagagga
     8341 aaaatcgcta tacaagctct aaaagactat aaacttgcta aagaaaacaa tgatacaata
     8401 gctatggcaa atcacaaatc cattttagaa actcatttta aagattttgg ttatggatat
     8461 ttagaaaaac caagcgatac tattccacct gtggctttaa ctttttatag ctttcatatc
     8521 atggttgctt taggaagttt tttcttttta cttttcatcg ttacgcttta tcttaccatg
     8581 gcaaatgata ttgagaaatt tagaaaagta ctttgggtgt gtttgttatc cattccattg
     8641 ggttatattg ccgctgaagc aggttggatt gttgctgaag taggcagaca accttgggca
     8701 attcaagact tgcttcctgt acatatcgca gcaacacaac ttggaaaagt caatgttcaa
     8761 atttcatttt ggatttttgc agtacttttt acagccttat tgattgcaga agttaaaatc
     8821 atgcttactc agattaaaaa aggttttgac gcacatgcag gacatactcc acttatgggc
     8881 aaaggagaaa aataatgttt tttggtttag aacttgaagg tttgcaaatt tattggtggt
     8941 tgattttaag tttactcggc ggacttttgg tttttatgtt ttttgtccaa ggtggacaga
     9001 ctttaatcga tgagcttagc aaggatgagc ttgaaaaaac catgctagtc aattctttag
     9061 ggcgtaaatg ggagcttggt tttacaactc tcgtactttt tggcggagca gcttttgcag
     9121 cttttccact tttttatagt acaagttttg gcggagctta ttgggcttgg ctttgtattt
     9181 tattttgttt tattttacag gctgtggctt atgaatatcg caaaaaagaa aataatgttt
     9241 atggctctaa aacctatgaa atttttctta aaattaatgg ttatttaggt gtgtttttaa
     9301 tcggagttgc agtaagtagc ttttttagcg gttctgaatt tatcttaaat gagcataatt
     9361 ttgtttcttg gcaaaatcct ttgcacggct tagaactttt acttaatcct tttaattatc
     9421 tcttaggctt agctttagta tttttagcaa ggcttttagg cgcagcgtat tttataaaca
     9481 atatcaatga tgagaatatc aaaataagag ctatgaaaaa acttatgatc aatagtattt
     9541 tatttttacc ttttttctta ggttttttag cgtggatttt cttaaaagat ggttttagtg
     9601 tagatgcaaa tggagttgta agcatgagtg cgaatttata tttatataat ttcttaaatc
     9661 aaatgatttt tgctgttttg cttgctatcg gtgtgatttt agtgctttta ggtatgtttc
     9721 aaggagcaaa aggttgctct aaagctattt ttaccctagg acttggaacg gttttaacag
     9781 tttttgcttt attatcaagc attggtttag gtcaaagtgc tttttaccca tctttaagtg
     9841 atttgcaaag ttctttaact ttaaaaaatg caagttcaag ctattatact ctaagcgtca
     9901 tggcttatgt gtctttactt gtaccttttg ttttagctta tattatctat gtttggaatg
     9961 caatggataa agtaaaaatt acacgcgaag aaatcgcaaa tgatgatcac gcatattaag
    10021 gagaaaaaat gttacatgct ttgtttttat tggcttggcc tttagtaatt tatctgagct
    10081 ataaatttat aatgctaaat atcaatcaat tagaaaaaga tagcaaacta taaagcaaga
    10141 taagatttaa accgatataa gtataaatct tttcaaaata ttgcaatttg cccatttttg
    10201 ggcatctttt aatcataaat cttttaaagc ttcattagca gcatcaaggg cgtgaataag
    10261 gcttgtgtca aaaattttga tatttgtatc atttttagat attaataaac caatttcagt
    10321 gcaagctaaa agcactcctt ttgccccttt ttcttgtagt ttttttataa tatttaaata
    10381 tttttcttta gaatcttgct tgatttcacc tttgcaaagc tcattaaaaa tgatatcatt
    10441 aacgattttt atatcttcat cactaggagt aataacgcta atattttctt caatcagcat
    10501 ttttttataa aaatcctgcg tcattgtgta tttagtaccc aataaaccaa ttttttgtat
    10561 gttttcttgt tttaaagcct tagcagaact ttttgcaata tgtaaaatag ggatatttat
    10621 attttgttga atttcatcaa aaaccttatg catagtatta gttgcaatta ttataaaatt
    10681 agcccctgca agttctaatt ttttagcaca ttgagtcaaa atttgtgcag cttcttgcca
    10741 tttatcttgg ctttgtaaat tttctatttc ttcaaaatta acactgtaaa gtaaaatttt
    10801 tgcagaattt aaagatttta atttatcatt tatagcttga tttattgttt tataataagt
    10861 aatagtgctt tcaaaactca ttccgcctat aataccaatg gttttcattt ttctccttaa
    10921 gaa
//
LOCUS       DARGEY010000047        10720 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.047, whole genome shotgun sequence.
ACCESSION   DARGEY010000047 DARGEY010000000
VERSION     DARGEY010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10720
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.047"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(81..1631)
                     /locus_tag="SF008_001026"
     CDS             complement(81..1631)
                     /locus_tag="SF008_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG8233303.1"
                     /translation="MNLKQISVIIIVKNAKQTLLECLNSLKDFDEIILLNNESSDNTL
                     NIANEFKKDFANLHIYHSAFIGFGALKNLALSYAKNDWILSIDADEVLENECIKELKN
                     LELQEDNIIALSRKNLYKGEWIKACGWWPDYVLRIFNKNFTRFNDNLVHESLVLPSNV
                     KKIHLKNGLKHHAFRDISHLINKMQHYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYF
                     LKNGFLYSYKGFIISVCNALGTFFKYMKLYELQKQKPKTCALIITTYNQKERLKLVLD
                     SVKNLTFLPNEVLIADDGSKEDTARLIEEYQKNFPCPLKHIWQEDEGFRLSKSRNKTI
                     KNADSEYIIIIDGDMILEKDFIKEHLEFAQRRLFLQGSRVILNEKESEEILNKDDYRI
                     AFNKKDFKSSKNSFLAKMLYSLSKKDEKIFKKTTLIKGIRGCNMSFFKTDFDKLDGFN
                     ENFIGWGREDSEFVARFLFNKGIFRRLKFKAIAYHIYHKENSKKMLESNHQIYLDTIK
                     NKKISWRN"
     gene            complement(1628..2515)
                     /gene="htrB"
                     /locus_tag="SF008_001027"
     CDS             complement(1628..2515)
                     /gene="htrB"
                     /locus_tag="SF008_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HEG8233304.1"
                     /translation="MKNSDRIYLSLYYILKFFVTFMPECILHFLALIVARITFYLNKK
                     HRKIIDTNLQICFPQYTQKERDKLSLKIYENFAQFGIDCLQNQNTTKEKILNKVNFIN
                     ENLLIDALALNRPIIFTTAHYGNWEILSLAYAAKYGAIAIVGKKLKSEIMYEILSQSR
                     TQFDIELIDKKGGIRQMLSALKKGRTLGILTDQDCAENESVRLKFFNKEVNYQMGASL
                     IAQRSNALIIPVYAYKEDGKFCIEFFKAKDSQNASLEELTLYQAQSCEEMIKKRPWEY
                     FFFHRRFASYNKEIYKDAK"
     gene            complement(2505..3533)
                     /gene="waaC"
                     /locus_tag="SF008_001028"
     CDS             complement(2505..3533)
                     /gene="waaC"
                     /locus_tag="SF008_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HEG8233305.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLIDKLYALPLKDKKILKSLKILLKARKNNYNVVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNVKNLAFKQDIFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQAKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFSLEELMAFTKMMNLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIIDAGKKIQNAKHIDKSDFCITRIEEEDIFKL
                     AKGLLNEK"
     gene            3600..4394
                     /locus_tag="SF008_001029"
     CDS             3600..4394
                     /locus_tag="SF008_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEG8233306.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSGSEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIENFFNFIENYEPKL
                     VSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG
                     RGIKLDTLCSMVGLPGKYDVHGDEVMKLFYEDELEKIHEYCESDVLNTYMLFLKYELI
                     KANVSEEDYVDFLSYMRDFLRSKKSDRSYTEVFAKACESEISKVRS"
     gene            4452..5438
                     /gene="galE"
                     /locus_tag="SF008_001030"
     CDS             4452..5438
                     /gene="galE"
                     /locus_tag="SF008_001030"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEG8233307.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDL
                     QKIRAFKFFEQDLSDFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNT
                     TNLIETCLQTGVNKFIFSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVLRDA
                     SMANPEFKHCILRYFNVAGACMDYTLGQRYPKATLLIKVAAECAAGKRDKLFIFGDDY
                     DTKDGTCIRDFIHVDDISSAHLAALDYLQENESNVFNVGYGHGFSVKEVIEAMKKVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLELICKSAFDWEKQC"
     gene            5432..7126
                     /gene="pglK"
                     /locus_tag="SF008_001031"
     CDS             5432..7126
                     /gene="pglK"
                     /locus_tag="SF008_001031"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HEG8233308.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSVFISFIETFAISLVMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GRYHAIAYKVFSKFLNINYEKFTQKNQSEILKSITGEVYNLSTMISSFLLLMSEIFVV
                     LLLYALMLLINYKITLFLSIFMVLNAFILVKILSPIIKKAGVRREEAMKNFFEILNTN
                     LNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVV
                     FLVLKNESDISGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLDIIYQNLRQE
                     EENLGEEKLSFNQELKICNLSFGYEGKKYLFKNLNLNIKKGEKIAFIGESGCGKSTLV
                     DLIIGLLKPKEGQILIDEQELNANNTKNYRQKIGYIPQNIYLFNDSIAKNITFGDAVD
                     EEKLNRVIKQANLEHFIKNLPQGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEMLVL
                     DEATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK"
     gene            7123..8202
                     /gene="pglH"
                     /locus_tag="SF008_001032"
     CDS             7123..8202
                     /gene="pglH"
                     /locus_tag="SF008_001032"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HEG8233309.1"
                     /translation="MMKISFIIATLNSGGAERALVTLANALCKEHEVSIIKFHAGESF
                     YKLENEVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKADVFISFLDTTNIACI
                     AAKIGLKTPLIISEHSNEAYLKPKIWRFLRRVSYPFCDALSVLGSSDKVYYERFVERV
                     KLLLNPCHFSDEISFDSSFEKENLVLFIGRLDHNKNPVMFLKAIAHLDKNLQENYKFV
                     IAGDGQLRQELEYKVKSLGIKVDFLGRVENVKALYEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLVDCDDEIALAKKLELVLNDENFRKELVNNAK
                     QRCKDFEISHIKEEWLKLIAEVKNA"
     gene            8195..9124
                     /gene="pglI"
                     /locus_tag="SF008_001033"
     CDS             8195..9124
                     /gene="pglI"
                     /locus_tag="SF008_001033"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HEG8233310.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSGALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMAKFSGEFFSVF
                     KKSLLENKRFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAYR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRVALCKN"
     gene            9112..10209
                     /gene="pglJ"
                     /locus_tag="SF008_001034"
     CDS             9112..10209
                     /gene="pglJ"
                     /locus_tag="SF008_001034"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HEG8233311.1"
                     /translation="MQKLGIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EIPECQIHFLECSKPSENPILKFLKLPFLALKYKKLCRNLGIDTEFVFLNRPNYIALM
                     ARMFGNKTRLVINECTTPSVMYMKNNFNSLVNKFLISLLYPKADLILPNSKGNLEDLV
                     QNFSISPKKCEILYNAIDLENIGQKALEDIALKDKFILSVGRLDKGKNHALLIRAYAR
                     LKTDLKLVILGEGVLKDELLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFE
                     GFSNVLIESLACSCAVVCTDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDK
                     LRKAYKNKAKTRAKAFDKVKIARDALKYLLG"
     gene            10213..>10720
                     /locus_tag="SF008_001035"
     CDS             10213..>10720
                     /locus_tag="SF008_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-binding protein"
                     /protein_id="HEG8233312.1"
                     /translation="MLKKEYLKNPYLVLFAMIVLAYVFSVFCRFYWVWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSTLTYWLYKITPFSFESIIL
                     YMSTFLSSLVVIPIILLANEYKRPLMGFVAALLASVANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMV"
BASE COUNT         3629 a         1339 c         1797 g         3955 t
ORIGIN      
        1 atttaataat aaaaaaataa attattttaa atataaatta ttaaaaaaaa tttataaatg
       61 taaaatgcta tttttaaaac ttaatttctc caagaaattt ttttattttt gatggtatct
      121 aaataaattt gatgattgct ttcgagcatt tttttgctat tttctttgtg ataaatatga
      181 taagcaatag ctttaaattt taagcgtcta aaaatgcctt tattaaataa aaatctagca
      241 acaaattcac tatcttctct accccaacca ataaaatttt cattaaaacc atcaagttta
      301 tcaaaatcag ttttaaaaaa actcatattg caacccctaa tacctttaat aagagtggtt
      361 tttttaaaga ttttttcatc tttttttgaa agactgtaaa gcattttagc taaaaaagaa
      421 tttttagaac ttttaaaatc ttttttatta aaagctatac gataatcatc tttgtttaaa
      481 atttcttcgc tttctttttc atttaaaatt actcttgaac cttgtaaaaa aagtcttctt
      541 tgtgcaaatt ctaaatgttc ttttatgaaa tctttttcca aaatcatatc accatcaata
      601 attattatat attcactatc agcgtttttt atagttttgt tgcgactttt actaagccta
      661 aacccttcat cttcttgcca aatgtgtttt aaagggcaag gaaaattttt ttgatattct
      721 tcaataagcc ttgctgtatc ttctttgcta ccatcatctg cgattaaaac ttcattgggt
      781 aaaaaggtta gatttttaac actatcaagc actaacttaa ggcgttcttt ttgattatag
      841 gttgttatta ttaaagcaca agtttttggc ttttgctttt gaagttcata taatttcata
      901 tatttaaaaa aagtccctaa ggcattacaa acgctaatta taaaaccctt ataactatac
      961 aaaaagccat tttttaaaaa ataatttcta aaaaaagtcc aaaaagctct taaatttgct
     1021 tttaaaacac cacttttttt gtgtatattt tgttttgccc aaaggcttga gtagtgctgc
     1081 attttattaa ttaagtgaga aatatctcta aaagcatgat gctttaatcc atttttaaga
     1141 tgaatttttt taacattact tggtaaaaca aggctttcgt gtactaaatt atcattaaaa
     1201 cgagtgaaat ttttattaaa aattcttaaa acataatcag gccaccaacc acatgccttt
     1261 atccattcgc ctttatagag atttttacga ctaagtgcga tgatattatc ttcttgaagt
     1321 tctaaatttt taagctcttt aatacactca ttttcaagca cttcatcagc atcaatgctt
     1381 aaaatccaat cattttttgc ataacttaaa gcaaggtttt ttaaagctcc aaaacctata
     1441 aaagcactgt ggtaaatgtg caaattagca aaatcttttt taaattcatt agctatattt
     1501 agggtattat cactactttc attgttaagt aaaataattt catcaaaatc ttttaaagaa
     1561 tttaaacatt caagcaaggt ttgttttgca ttttttacaa tgataataac acttatttgc
     1621 tttagattca ttttgcatcc ttgtaaattt ccttattata acttgcaaag cgtctatgaa
     1681 aaaaaaagta ttcccaaggt ctttttttaa tcatttcttc gcaactttgc gcttgataaa
     1741 gtgtcagttc ttctaagctt gcattttgag aatcttttgc tttaaaaaac tctatgcaaa
     1801 atttaccatc ttctttatag gcataaacag ggatgatcaa agcattgctt ctttgtgcga
     1861 taaggcttgc tcccatttga taattcactt ctttgttaaa aaattttaat cttacgcttt
     1921 cgttttctgc gcagtcttga tcggttaaaa ttcctaaagt tctccctttt tttagagcgc
     1981 ttagcatttg tcttatgccg ccttttttgt cgataagttc tatgtcaaat tgggtgcgac
     2041 tttggcttaa aatttcatac ataatttcac tttttaactt tttccctact atagcaatcg
     2101 caccatattt agccgcataa gcaaggctta aaatttccca gtttccatag tgtgcagttg
     2161 tgaagataat aggacgattt aaagctagag cgtctataag taaattttca ttgatgaaat
     2221 ttactttatt gagaattttt tctttggtgg tgttttgatt ttgcaaacaa tcaattccaa
     2281 attgagcaaa attttcataa attttcaaag acaatttatc gcgttctttt tgagtgtatt
     2341 gagggaagca gatttgcaaa tttgtatcga tgattttgcg atgttttttg ttaagataaa
     2401 aagtgattct tgctacaatt aaagctaaaa aatgcaagat acactcaggc ataaaagtaa
     2461 caaaaaattt caaaatataa taaagactaa gatatattct atcactattt ttcattaagt
     2521 aagcctttgg caagtttgaa gatatcttct tcttctatac gcgtgataca aaaatcactt
     2581 ttatcgatat gcttggcatt ttggattttt ttacctgcat caatgatttt attgatatga
     2641 gtttgaaaag cattgcggta gcttggtgtt gcaccaaaaa tcgtaataga tgctttattt
     2701 aaagcaaaag ccaaatgtgt tggaccacta tcatttccta tgataagatt catcattttt
     2761 gtaaaagcca ttagctcttc aaggctgaat tttggtgcta attctatatg tgtttcatca
     2821 ataccactaa gatttaaaac ctctttggca aattcgtatt cttttacatt tccccaagcg
     2881 agccaaattt ttgcttgttg aaattcattg attaaaagtt tgcaaagtat agcaagtttg
     2941 gttttaggat agattttatt ttctacactt gaacccacgt gtatgagtat gtttttttcg
     3001 tttttgtcga gcttgagttt attgtttaag agttgtttta aattttcatc tacgctaaaa
     3061 atatcttgtt taaaggctaa atttttgaca ttaaaatcag tatttaacat aaaggaggta
     3121 agacttaagt atcttacaaa tacattttca ttgtaatcta actcaagttt ttggttgtag
     3181 aaattatgag caaaactttc tttaagacta tttttatcaa aaccaaaatt atttctactt
     3241 aaaattcgac ttacaatagc agattttata agcccttgta gatctattac tacattatag
     3301 ttgttttttc ttgctttaag aagaattttt aggcttttta aaattttttt gtcttttaag
     3361 ggcagggcat agagtttgtc tattaaagga tggtttttaa gtatgccttc aaatttttca
     3421 tctacaaacc aatgaatttc tatatctttt ttaaaatttt tgataaattg caaaaccacg
     3481 gcactttgga taatatcacc aagtgctgac aaacgaacaa ttgctatttt cattaaaagc
     3541 ctaatatttt aaaatttttg ctatgatttt agcgaaatta tttaaaaaaa ggttaaaaaa
     3601 tggcaaaaaa tgaaggttat atttgtgttt ttgattgtga gagtgtgcca gatgttgagc
     3661 ttatccgcaa aactttaggt tttgaaggaa gtgatttgga ggtaagttta aaagcacttc
     3721 agtggcaaaa agaacaaagc gggagtgagt ttttgccttt gccttatcat aaaatcatca
     3781 gtatttgtgc ggttttaagc gataattttg gaaaatttat caaagtaaat aaaattgatg
     3841 ggcaaaatga aaaagaaatg attgagaatt ttttcaattt tatagaaaat tatgagccaa
     3901 aattagtcag ttttaatggt aaaaattttg atatgcctgt tcttgtttta agggctttaa
     3961 aatacaattt aaaagcagca acttatttag atactcaaag tgataaatgg aataattata
     4021 aaacaagatt ttcagaatta aaacattgtg atttattaga atccttagga tctaatgggc
     4081 gtggaataaa gcttgataca ctttgctcta tggtgggttt gccaggaaaa tacgatgtgc
     4141 atggtgatga ggtgatgaaa cttttttatg aagatgaact tgaaaaaatc cacgaatatt
     4201 gtgaaagtga tgttttaaac acctatatgc tttttttaaa atatgaactt attaaagcta
     4261 atgttagtga agaagattat gttgattttc tttcttatat gagagatttt ttgcgttcaa
     4321 aaaaatcaga tcgttcttat acagaagttt ttgcaaaagc ttgtgagagt gaaatttcaa
     4381 aagttcgatc ttaagtattt aagaaaatat attaaaattt atttttgaca ttttcaaaaa
     4441 aaggaatgat gatgaaaatt cttattagcg gtggtgcagg ttatataggt tctcatactt
     4501 taagacaatt tttaaaaaca gatcatgaaa tttgtgtttt agataatctt tctaagggtt
     4561 ctaaaatcgc aatagaagat ttgcaaaaaa taagagcttt taaatttttt gaacaagatt
     4621 taagtgattt tcaaggcgta aaagcattgt ttgagagaga aaaatttgac gctattgtgc
     4681 attttgcagc gagcattgaa gtttttgaaa gtatgcaaaa tcctttaaaa tattatatga
     4741 acaacactgt taatacaaca aatctcatcg aaacttgttt gcaaactgga gtgaataaat
     4801 ttatattttc ttcaacggcg gccacttatg gcgaaccaca aactcccgtt gtgagcgaaa
     4861 caagtccttt agcacctatt aatccttatg ggcgtagtaa gcttatgagt gaagaagttt
     4921 tgcgtgatgc aagtatggca aatcctgaat ttaagcattg tattttaaga tattttaatg
     4981 ttgcaggtgc ttgtatggat tatactttag gacaacgcta tccaaaagcg actttgctta
     5041 taaaagttgc agctgaatgt gccgcaggaa aacgtgataa acttttcata tttggcgatg
     5101 attatgatac gaaagatggc acttgcataa gagattttat ccatgtggat gatatttcaa
     5161 gtgcgcattt agcggctttg gattatttac aagagaatga aagcaatgtt tttaatgtag
     5221 gttatggaca tggttttagc gtaaaagaag tgattgaagc gatgaaaaaa gttagcggag
     5281 tggattttaa agtagaactt gccccacgcc gtgcgggtga tcctagtgta ttgatttctg
     5341 atgcaagtaa aatcagaaat cttacttctt ggcagcctaa atatgatgat ttagagctta
     5401 tttgtaaatc tgcttttgat tgggaaaaac agtgttaaaa aaactttttt ttattttaag
     5461 taaggaagat aaaaattttt tatttttctt gcttgttttt tcagtattta tttcttttat
     5521 agaaactttt gcaatttctt tggtaatgcc ttttatcact ttggctagtg atttttctta
     5581 ttttgatcgt aataaatatt taatcagcct aaaagaatat cttaatatcc ctgtttttga
     5641 aatcattgtt tattttggag tggggcttat tgttttttat gtgtttagag ctttgttaaa
     5701 tgcgtattat tttcatcttt tggcaagatt ttctaaaggg cgttatcatg cgatcgctta
     5761 taaggttttt tctaaatttt taaatattaa ttatgaaaaa tttactcaaa aaaatcaatc
     5821 tgaaatttta aagtccatta caggggaagt ttataatcta agcactatga tttcatcatt
     5881 tttacttttg atgagtgaaa tttttgtagt acttttgctt tatgctttaa tgcttttgat
     5941 taattataaa atcactttat ttttaagtat ttttatggtg ttaaatgcct ttattttagt
     6001 gaaaatttta agccctatca ttaaaaaagc aggagtaaga cgcgaagaag cgatgaaaaa
     6061 tttctttgaa attttaaata caaatttaaa taatttcaaa tttattaagc ttaaaaccaa
     6121 agaagatgga gtattaagtc tttttaaagc gcaaagtgaa gctttttcta aagcaaatat
     6181 taccaacgaa agcgtagctg cggtgcctcg aatttatctt gaaggaatag gcttttgcgt
     6241 acttgttttt atcgtggtat ttttggtttt gaaaaatgaa agtgatattt caggtatttt
     6301 atccacgatt tctatttttg ttttagcgct ttatcgctta atgccaagtg caaatcgtat
     6361 tattacaagt tatcatgatt tgctttatta tcattcttct ttggatatta tttatcaaaa
     6421 tttaagacaa gaagaagaaa atttgggcga ggaaaaatta agctttaatc aagagcttaa
     6481 aatttgcaat cttagctttg gttatgaggg aaaaaaatat ttatttaaaa atcttaactt
     6541 aaatattaaa aaaggcgaaa aaatcgcttt tataggggag agtggttgtg gaaaaagtac
     6601 cttagtagat cttatcatag gacttttaaa accaaaagaa gggcaaattt taattgatga
     6661 gcaagaatta aatgcaaata atacaaaaaa ttatcgccaa aaaataggct atatcccgca
     6721 aaatatctat ctttttaatg acagtatagc taaaaatatc acttttggag atgcggttga
     6781 tgaagaaaaa cttaataggg ttatcaaaca agcaaattta gagcatttta taaaaaattt
     6841 acctcaagga gtgcaaacaa aagtgggcga tggggggagt aatttaagcg ggggacaaaa
     6901 acaacgcata gctatagcaa gagctttata tttagagcct gaaatgttag tgcttgatga
     6961 agcaacttct gcgcttgata ctcaaagtga agcaaaaatt atggatgaaa tttataaaat
     7021 ttctaaagat aaaaccatga ttattatcgc acatcgcctt tctacgataa cacaatgtga
     7081 taaggtttat cgtttagaac acggtaagct taaagaggag aaatgatgaa aataagcttt
     7141 attatcgcaa ctttaaattc aggaggtgct gagcgtgctt tagtaacctt agctaatgca
     7201 ctttgcaaag agcatgaagt aagtattatt aaatttcatg caggagaatc tttttataag
     7261 cttgaaaatg aagttaaagt tacaagtttg gaacaattta gatttgacac gctttatcat
     7321 aaaatcgcaa gtcgttttaa gaaatttttt gctttaagaa aggctttgaa agaaagtaag
     7381 gctgatgttt ttatttcttt tttggatacg actaatattg cttgtattgc tgcgaaaata
     7441 gggcttaaaa ctccactcat tataagtgag catagtaatg aagcgtattt aaaacctaaa
     7501 atttggcgtt ttttaagaag ggtaagctat cctttttgtg atgctttaag tgtgcttgga
     7561 agcagtgata aggtgtatta tgaaagattt gtagaaaggg ttaagctttt attaaaccct
     7621 tgtcatttta gcgatgaaat ttcttttgat tctagttttg aaaaggaaaa tttggttctt
     7681 tttatagggc gtttagatca caacaaaaac cctgtaatgt ttttaaaagc tatagcgcat
     7741 ttggataaaa atttacaaga aaattataaa tttgttatag caggagatgg acagttaaga
     7801 caagaacttg aatacaaggt aaaatcttta ggaataaaag ttgatttttt aggacgcgtt
     7861 gaaaatgtca aggctcttta tgaaaaagca aaagtgcttt gcctttgttc ttttgtagag
     7921 ggtttgccaa cggttttaat tgaaagtttg tattttgagg tttgtagaat ttcaagttct
     7981 tattataatg gtgctaagga tttaatcaaa gataatcatg atgggctttt ggtagattgt
     8041 gatgatgaaa tagcacttgc taaaaaactt gaacttgttt taaatgatga aaattttaga
     8101 aaagaacttg taaataatgc caaacaaagg tgtaaagact ttgaaatttc tcatatcaaa
     8161 gaagaatggc ttaagcttat agccgaggtt aaaaatgcct aaactttctg ttatagtacc
     8221 aacttttaat cgtcaagttt tgttagaaaa ggctattaaa agcatacaaa atcaagattt
     8281 taaagattta gaaattattg taagcgatga taattctagc gatgatacta aaagtgtggt
     8341 gcaaaattta caaaaagatg atgatcgcat taagtatttt ttaaatcaaa attacaaaca
     8401 aggtccaaat ggcaataaaa acaatggctt agatcaagca agtggcgagt ttgtaacttt
     8461 tttagatgat gatgatgagc ttttatccgg ggctttaagt accttgatgc aaaaagcaaa
     8521 tgagggttat gctcatgttt ttggaaattg tttgatagaa aaagaaggaa atttaagcaa
     8581 ggaatttagc ggcaagggct tggaaaaaga tagtgaaatt tctaaaaaag attttttaat
     8641 ggctaaattt agcggagagt ttttttctgt ttttaaaaaa tccctacttg aaaataagcg
     8701 ttttaatgaa gaattttatg gcaatgaagc cacgctttgg gtaaatttat acaaagaaaa
     8761 aagtttttat atccataagg cttttaggat ttatagaatt tttaggcaag atagcgtgac
     8821 tttaggggcg agtaaaaatg cttatagggt gtatttggga tatttagagc ttgctaaaat
     8881 tttagaaaat gaacttagaa tgagtaagga taaagattat aaaaaaactt gtgcgagtta
     8941 ttataaaatg gcagcttatt atgcaaaact tgcaaaaaat tataaagccc tttataaatg
     9001 tttgtttaaa agcctaagta taaaaatcaa cgctcctgct ttgatattac tcattttaag
     9061 tataattcca aataatatga ttgaaaaatt atcaaaaatt cgggtggctt tatgcaaaaa
     9121 ttaggcattt ttatttattc tttaggaagt ggtggtgctg aaagagttgt ggcgacttta
     9181 ttgcctattt taagtttgaa atttgaagtg catttgatct tgatgaatga taaaatttct
     9241 tatgaaattc cagagtgtca aattcatttt ttagaatgtt caaaacctag tgaaaatcct
     9301 attttgaaat ttttaaaact accttttttg gctttaaaat acaaaaaact ttgcagaaat
     9361 ttaggtattg atacagaatt tgttttttta aatcgaccta attatatagc tttaatggca
     9421 agaatgtttg gaaacaaaac tcgccttgtg atcaatgaat gcactacgcc aagtgtgatg
     9481 tatatgaaaa ataattttaa ttctttggta aataaatttt taatttcttt gctttaccca
     9541 aaagctgatt taatcttgcc taattctaag ggaaatttag aagatttagt gcaaaatttt
     9601 agtataagtc caaaaaaatg tgaaatttta tacaatgcca tcgatttaga aaacataggg
     9661 caaaaagccc ttgaagacat agctttaaaa gataaattta ttttaagtgt aggcaggctt
     9721 gataaaggta aaaatcatgc tttattaatt cgtgcttatg cgagattgaa aacagattta
     9781 aagcttgtga ttttaggtga aggtgtgctt aaggatgagc ttttagcttt gattaaagaa
     9841 ttaaatttgg aagaaaaggt tttgctttta ggatttgata ataatcctta taaatacatg
     9901 gctaaatgcg aattttttgc ttttgcttct gtgtttgaag gtttttcaaa tgttttaatc
     9961 gaaagtttgg cttgttcttg tgcggtggtt tgcactgatc ataaaagtgg tgcaagagag
    10021 ctttttggcg atgatgaatt tggactttta gtagaagtag ataatgaaaa ctctatgttt
    10081 cagggtttaa aaactatgct tgaagacgat aaattaagaa aagcgtataa aaacaaagct
    10141 aaaactaggg ctaaagcctt tgataaagta aaaattgcac gcgatgcttt gaaatattta
    10201 ttaggataaa agatgttgaa aaaagagtat ttaaaaaacc cttatttagt tttgtttgcg
    10261 atgattgtat tagcttatgt ttttagtgta ttttgcaggt tttattgggt ttggtgggca
    10321 agtgagttta acgagtattt tttcaataat caattaatga tcatttcaaa cgatggctat
    10381 gcttttgctg agggcgcaag agatatgata gcaggttttc atcagcctaa tgatttgagt
    10441 tattatggat cttctttatc tactcttact tattggcttt ataaaatcac acctttttct
    10501 tttgaaagta tcattttata tatgagtact tttttatctt ctttggtggt gattcctatt
    10561 attttactag ctaatgaata caaacgccct ttaatgggct ttgtagctgc tcttttagca
    10621 agtgtagcaa acagttatta taatcgcact atgagtgggt attatgatac ggatatgctg
    10681 gtaattgttt tacctatgtt tattttattt tttatggtaa
//
LOCUS       DARGEY010000048        10641 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.048, whole genome shotgun sequence.
ACCESSION   DARGEY010000048 DARGEY010000000
VERSION     DARGEY010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10641
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.048"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..173
                     /locus_tag="SF008_001036"
     CDS             <1..173
                     /locus_tag="SF008_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233313.1"
                     /translation="KREDLEIVKIEKMKFLNQVEVCFVIKTKNKILLKCFESIYKKED
                     LEKLKNWYENKL"
     gene            269..1429
                     /gene="pglE"
                     /locus_tag="SF008_001037"
     CDS             269..1429
                     /gene="pglE"
                     /locus_tag="SF008_001037"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HEG8233314.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKAY
                     SKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENEIVLIEDAAEAL
                     GSFYKNKALGTFGEFGAYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGECFSFLDELENS
                     RSNRWLSTALIDFDKNELNSCQKDINISQKNITLHPKISKLIEDLKNEQIETRPLWKA
                     MHAQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKNDVYEISKLILKSIKA"
     gene            1431..3203
                     /gene="pglF"
                     /locus_tag="SF008_001038"
     CDS             1431..3203
                     /gene="pglF"
                     /locus_tag="SF008_001038"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HEG8233315.1"
                     /translation="MIFYKSKRLAFFLISDIVLILLSVYLAFSLRFSGDIPSIFYYGM
                     MVSAIILLVLKLSFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPSKMKEEETPCIVVGATSKALHLLK
                     GAKEGSLGLFPVGVVDARKELIGTYCDKFVVEEKERIKSYVEQGVKTAIIALRLEQEE
                     LKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILDKQ
                     SLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGKPVKIIDLAKKMLL
                     LSNRNDLEIKITGLRKGEKLYEELLIDENDAKTQYESIFVAKNEKVDLDWLNKEIENL
                     QICEDISEALLKIVPEFKHNKEGV"
     gene            3203..4096
                     /locus_tag="SF008_001039"
     CDS             3203..4096
                     /locus_tag="SF008_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HEG8233316.1"
                     /translation="MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQGEDRSTRSYFYRAVKLRRCVL
                     SDPYPSVLNNELCVTASMPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     LVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGV
                     SLLLLGLSVYLFTVKYKNNNI"
     gene            4209..4601
                     /locus_tag="SF008_001040"
     CDS             4209..4601
                     /locus_tag="SF008_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HEG8233317.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAE"
     gene            4624..5469
                     /locus_tag="SF008_001041"
     CDS             4624..5469
                     /locus_tag="SF008_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEG8233318.1"
                     /translation="MQKKYYELFFIVEEQYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEEFSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNCINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFHKAWCGSIDKANGLYNLIVANII
                     ADVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            5473..7410
                     /gene="ftsH"
                     /locus_tag="SF008_001042"
     CDS             5473..7410
                     /gene="ftsH"
                     /locus_tag="SF008_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEG8233319.1"
                     /translation="MNNNTPNNKGNPQGNNFFNKNPIFIFAIFAIVMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSHNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NGLPTRLQELEEVKTEVKVEE"
     gene            7407..8024
                     /locus_tag="SF008_001043"
     CDS             7407..8024
                     /locus_tag="SF008_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEG8233320.1"
                     /translation="MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLF
                     RAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA"
     gene            8034..8762
                     /gene="pssA"
                     /locus_tag="SF008_001044"
     CDS             8034..8762
                     /gene="pssA"
                     /locus_tag="SF008_001044"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HEG8233321.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLYPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKIRNQE"
     gene            complement(8753..9550)
                     /locus_tag="SF008_001045"
     CDS             complement(8753..9550)
                     /locus_tag="SF008_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEG8233322.1"
                     /translation="MQKEFFQELQDILYEKNITIKFHSFQNFYEDFKSHKLIFNHEHQ
                     SIFKKNTSQQITLLHPTRIRRPKFVNSTHALAKIIHSVAHIEFNAINLALDASYRFKN
                     LPLQFYYDWLEVADEEIKHFKLLNSALKELSYKYGNFPVHDNLESALEATKDSLSFRM
                     GVVHRGLEAKGLDANPFVVQKLQSSNHSIKNLLMEYLEIILNDEIKHVKKGDTWWKFA
                     NQNRYDFIELCKTFKQFSLAGKKLNIQARIKAGFTQEECEVIEKFYS"
     gene            9640..9999
                     /locus_tag="SF008_001046"
     CDS             9640..9999
                     /locus_tag="SF008_001046"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HEG8233323.1"
                     /translation="MKELNEEEKKVILNKGTEAPFSGKYNDFYEKGIYQCKQCGASLY
                     KSEDKFKSGCGWPSFDDEIKGAVKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKN
                     VRHCVNSISLEFVKTKD"
     gene            10014..10640
                     /locus_tag="SF008_001047"
     CDS             10014..10640
                     /locus_tag="SF008_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HEG8233324.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLF
                     RTILYTAFTIVLVFLSSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDGGLDVALGGVMIAFIFM
                     FILFHFAATIEKIVGKLILHVFSRIAQVFIAAMGFKMIIIGLKDIFNL"
BASE COUNT         3633 a         1199 c         2034 g         3775 t
ORIGIN      
        1 taaaacgaga agatttagaa attgttaaaa tagaaaaaat gaaattttta aatcaagttg
       61 aagtttgttt tgttatcaaa acaaaaaata aaatactcct taaatgcttt gaaagtattt
      121 ataaaaaaga agacttagaa aagcttaaaa attggtatga aaacaagctt tgactataaa
      181 aagaatttaa atatttgaat ctttgtaaat ttttttaggt aaaatagagt caatttataa
      241 aaattttgtt ttacacaaag gataaatcat gagatttttt ctttctcctc cgcatatggg
      301 tggtaatgaa ttaaaataca tagaagaagt tttcaaaagc aattatatag cacctttggg
      361 tgaatttgta aatcgctttg aacaaagtgt caaggcttac agtaaaagtg aaaatgcctt
      421 agctttaaat tcagccacag cggctttgca tttagcttta agggtggcag gggtaaaaca
      481 agatgatatt gttttggctt cttcttttac ttttatcgct tcagtagcac ctatttgtta
      541 tcttaaagca aaacctgtat ttatagattg tgatgaaact tataatatcg atgtagattt
      601 attaaagctt gctattaaag aatgtgaaaa aaaaccaaaa gcattgattt taactcatct
      661 ttatggcaat gcggctaaaa tggatgaaat tgttgaaatt tgcaaagaaa atgaaattgt
      721 tttaatcgaa gatgctgctg aagctttagg aagtttttat aagaataaag ctttaggaac
      781 ttttggagaa tttggagctt attcttataa tggcaataaa attatcacca cttcaggtgg
      841 aggtatgctt ataggaaaaa ataaagaaaa gattgaaaaa gcaagatttt atagcactca
      901 agctagggaa aattgtttgc attatgaaca tttagattat ggttataatt accgcttaag
      961 caatgtttta ggagctattg gcgtagcgca aatggaggtt ttagaacaaa gagtgcttaa
     1021 aaaaagagaa atttatgagt ggtataaaga atttttagga gagtgtttta gctttttaga
     1081 tgaattagaa aattcaagaa gcaatcgctg gttaagtaca gctttgattg attttgataa
     1141 aaatgaactt aattcttgtc aaaaagatat aaatatcagt caaaaaaata ttactttgca
     1201 tccaaaaatt tcaaaactca tagaagattt gaaaaatgaa caaatagaaa caagaccatt
     1261 atggaaagct atgcacgctc aagaagtatt taaaggagct aaggcttatc ttaatggcaa
     1321 tagtgagtta tttttccaaa aaggaatttg tttgccaagt ggtacggcga tgagtaaaaa
     1381 tgatgtttat gaaatttcaa aactgatctt aaagagcata aaggcttaaa atgatttttt
     1441 ataaaagcaa aagattagca ttttttttaa tttcagatat tgttttaatt ttacttagcg
     1501 tttatctggc tttttctttg agatttagtg gagatattcc gagcattttt tattatggta
     1561 tgatggtttc tgctattatt ttgcttgttt taaaactttc atttttattt gtttttagaa
     1621 tttacaaagt agcttggaga tttttttctc tcaatgaagc aagaaaaatt tttattgctt
     1681 tgcttttagc tgagttttgt ttttttctta ttttttattt ttttagtgat ttttttaatc
     1741 cttttccaag aagtgctatt gtgatagatt ttgttctttc ttatatgttt ataggtactt
     1801 taagaattag caaaagaatg cttgtggatt ttaaaccttc taaaatgaaa gaagaagaaa
     1861 ctccttgtat tgtagtaggg gcaacttcta aggctttgca tttgttaaaa ggtgcaaaag
     1921 aaggttcttt agggcttttt cctgtgggtg tagttgatgc gagaaaagag cttataggga
     1981 cttattgtga taaatttgtt gtagaagaaa aagaaagaat aaaatcttat gtagaacaag
     2041 gggtaaaaac tgccattatt gctttaagac ttgaacaaga agagcttaaa aaactttttg
     2101 aagaacttgt agcttatggt atttgtgatg taaaaatatt ttcttttaca agaaacgaag
     2161 caagagatat cagtatagaa gacttgcttg ctagaaaacc aaaagattta gatgatagtg
     2221 ctgtggcggc ttttttaaaa gacaaggtag ttttggtaag tggagcaggt ggaactatag
     2281 gcagtgaact ttgtaagcaa tgtattaaat ttggtgctaa gcatcttatt atggttgatc
     2341 atagtgagta taatctttat aagatcaatg atgatttaaa tttatataaa gaaaaaatta
     2401 ctcctatttt actgagtatt ttagataagc aaagtttaga tgaggtatta aaaacttata
     2461 aacctgagct tattttacat gcagccgctt ataaacatgt gcctctttgc gaacaaaatc
     2521 cacattcagc agtaatcaat aatattttag gaactaaaat tttatgcgac agtgctaaag
     2581 aaaataaagt agctaaattt gtgatgataa gtacagataa agcagtgcga ccaacaaata
     2641 ttatgggttg cactaaaaga gtttgtgagc tttatacttt aagtatgagt gatgaaaatt
     2701 ttgaagttgc ttgtgtgcgt tttggtaatg ttttaggttc tagtggtagt gtgataccga
     2761 aatttaaagc acaaattgcc aataatgagc ctttaacttt gacgcaccct gatatagtgc
     2821 gttattttat gcttgtggct gaggcagtgc aacttgtttt acaagctgga gctatcgcaa
     2881 aagggggaga actttttgtt ttggatatgg gtaagcctgt gaaaatcata gatttagcta
     2941 aaaaaatgct tttactttct aatcgcaatg atttagaaat taaaatcaca ggcttaagaa
     3001 aaggtgagaa gctttatgaa gagcttttga ttgatgaaaa tgatgctaaa acgcaatatg
     3061 agagtatttt tgtagcaaag aatgagaagg ttgatcttga ttggcttaat aaagagatag
     3121 aaaatttaca aatatgtgaa gatatttcag aggctttatt aaagattgta cctgaattta
     3181 aacacaataa agaaggtgta taatgtatat aaaagatata caaagatttg aagataatcg
     3241 ctatcgtgct agagcttata tgagttatat tttaacaaga aatctgccta ataaacttcc
     3301 tgatattcac cttgaaacga ttaaaacagc tttggataaa atagctcatg aagttgttgt
     3361 ttttgatgct ttgtatattt tagatatttc aggtatgcaa atagaaaatg cgatttcctt
     3421 aaataaagct catgaaatag ggcagggtga ggatagaagt actcgttctt atttttatag
     3481 agctgtaaaa ttaagacgat gtgttttgag cgatccttat ccttcggttt taaataatga
     3541 gctttgcgtg acagcttcta tgccaattta cgatgataaa aataacttgc tttttgttgt
     3601 ttgtattgat atcaagcttg aagatatttt aaagattatt caagcaggaa aatttgaatt
     3661 tgtttttact cagtttagtc gtttggtata tttttgcttc gcactggttt tatttgtgat
     3721 tacttgtttt ttatttcaaa aaggtttttt tagtcttttt gataatcaag ctataggtat
     3781 agaacatatg tttgaaagta ccatcgctat aactttggct ttagctattt ttgatttggc
     3841 aaaaactttg atcgaacaag aagtattagg aaggacgaaa aaagaagaag gtggaattca
     3901 aaaaactatg gtgagatttt tgggttctat tatcattgct ttagctatag aagctttgat
     3961 gttggtattt aaacttgcta ttggtgatct ttctcagatg atttatgcga tttatcttat
     4021 cggtggagtg agcttgcttc ttttaggttt aagtgtatat ttatttacgg ttaagtataa
     4081 aaataataat atttgagtaa aaatttaagt aaaagatgat ataatgctgt tttttaaaat
     4141 tttttagctt gattaataag gctaaaaagg gtaaaataaa actataaaaa ctttgaaagg
     4201 acgaaattgt gaaattgtta gttgttgatg acagttctac tatgagaagg attattaaaa
     4261 ataccctaac aagacttgga cacgatgatg ttttagaagc tgagcatggc gttgaagctt
     4321 gggatttatt aactaaaaat gaagatgtaa aagttttaat tacagattgg aatatgccag
     4381 aaatgaatgg cttggagttg gtaaaaaaag taagagcaga gaaaaaatat gaagatatgc
     4441 ctatcatcat ggttacaact gagggcggaa aagctgaagt gattactgct ttaaaagctg
     4501 gcgtaaataa ctatattgta aaacctttta ctccacaagt tttaaaggaa aaacttgaag
     4561 atgttttagg aacaggaagt ggagaaggtg cagctgagta aaggctgatt tttaaaattc
     4621 taaatgcaaa aaaaatatta tgaattgttc tttatcgtag aagagcagta taaaaattta
     4681 tttcttgatt ttgcttttga tttaggtata gaagccatag aagagaaaga taatggtgtt
     4741 tacattagat cccatgagag tttagaagag ttttcatggg cacttgaaat atttgctcaa
     4801 aaacttacaa ctactttcaa tttaaatcat aaaattattt ctaatttaag tcttgtagag
     4861 aaagaaaaca aggactggat acaagaatat aaaaaaggca taaaacctat cttagtggat
     4921 aatgtttaca tccatacaac ttggcaagaa gaaaagaaga attgtataaa tataaagatt
     4981 aatccagcct tagcctttgg ctcaggacat cacgaaagca catattcttg tgtaaaattt
     5041 ttacaaaaat tttctaaaag taaattaaga gctttagatc ttggttgtgg tagtggaatt
     5101 ttgggtatta ttatggcaaa gtttggctgt aatgttgaaa tttgtgatac tgatgagttg
     5161 gctattgata gttctttaga aaatgcaaga ttaaatggtg tcgattttca caaggcttgg
     5221 tgtggatcta tagataaagc aaatggttta tataatctaa ttgttgcaaa tatcattgca
     5281 gatgtgattt taattttaga aaaagatatt aaaaaccatt tagaagataa tgctatactt
     5341 attttgtcag gaattttaga taaatattca acaagaatta aagaaaaatt tcaagatttg
     5401 gaactcattg atgaaatgca aatcaatgag tggtgtagtt ttgtatataa aaataataaa
     5461 aaaggataag taatgaataa taatacccca aataataagg gtaatccgca gggtaataat
     5521 ttttttaaca aaaatcccat ttttattttt gcgatttttg caattgtaat gataattatt
     5581 tttaagggat tttttgatgg caatggttct tttggcgggg cattgaatgg caatgaagta
     5641 aataaaaatg tcccttattc tgagttaaaa aagcttattg aaagtggaca aatcaatcaa
     5701 gttagtatag gacaaacaac aatcaaagcg atttcaagct ctcacaatac tgtttataca
     5761 gcaaaaaaag ttaatgatcc tgagcttgtg agtttactag atagtaaaaa tatcgcttat
     5821 ggtgcgtatt ctgaaacaaa ttggtttacg gatatacttt tttcatgggt tttgccagta
     5881 tttattttct ttggtatttg gatgtttttg gcaagtcgta tgcaaaaaaa tatgggaagt
     5941 tctatattgg gtataggaag ttctaagaag cttgtaaatt cagaaaaacc taaagtaaaa
     6001 tttagcgatg tagctggtgt tgaagaagct aaagaagaag taaaagaaat tgtagatttt
     6061 ttaaagtatc ctgaaagata tattaaattg ggagctaaaa ttccaaaagg gcttttactt
     6121 gttgggcctc caggtacagg aaaaactttg cttgcaaaag cagttgcagg tgaagctgat
     6181 gtgccgtttt ttagtgtttc aggttcatct tttatagaaa tgtttgtggg tgtaggtgct
     6241 tctcgtgtga gagatttgtt tgaaaatgca aaaaaagaag ctcctgctat tgtttttata
     6301 gatgaaatag atgctattgg taaaagtcgt gcagcaagtg gcatgatggg tggaaacgat
     6361 gaaagagagc aaactttaaa tcagcttttg gctgaaatgg atggctttgg gacagaaagt
     6421 tccccagtca ttgttttagc agcaacaaat cgcccagaag ttttagatgc agcgctttta
     6481 agaccaggaa ggtttgatag acaagtttta gttgataaac ctgattttaa aggtaggtgt
     6541 gatattttaa aagtacacat gaaagatgtc aaaatatccc caaaagttaa agtagaagat
     6601 atagcacgtt taaccgcagg acttgcagga gctgatcttg caaatattat taatgaagca
     6661 gcacttttag cgggtaggga ttctaaaaaa tatgtagaac aaaatgattt agttgaagct
     6721 gttgaaagag ctatagcagg acttgagaag aaatcacgtc gtattaatga aaaagaaaag
     6781 aaaattgtta cttatcatga atgtggtcat gccttgattg ctgaaactac caaaggtgca
     6841 aagcgtgtaa gtaaagtttc tgtgattcca cgtggtcttg cggctttagg atacacatta
     6901 aacacccctg aagaaaataa atttttaatg caaaaacatg aacttatcgc tgaagtagat
     6961 gtacttttgg gtggtcgtgc ggctgaagaa gtatttatag gtgaaatttc aacgggtgca
     7021 agtaatgatt tagaaagagc aaccgatatc ataaaagcta tgatttctat gtatggtatg
     7081 agtgaaattg caggacttat ggtgcttgaa aaacaaagaa atactttctt aagtggtggg
     7141 caaactataa aagactattc tgaaaagatg gcagaatctt tagatgatta tgtaaagaaa
     7201 accttagatg aacgctataa agatgttaaa gatactttaa atacttataa gggagcgatt
     7261 gagactatgg ttgcagccct ttatgaagaa gaaactattg aaggtaataa agtgcgtgag
     7321 attattaaag agtttgagga tcaaaatggt ttaccaactc gtttacaaga actcgaagaa
     7381 gttaaaactg aagttaaagt agaagaatga aagattttat tgcaaaagat ggatatttaa
     7441 gtcttattat tttaagctta atttttattt ttgtgtggat tttttattct ttttccatct
     7501 tgctattagc attaattgta atttgtattt ttctttttag agcgcccaaa agagaacttg
     7561 tttgtagtga tgaaaaagct atttttgcac ctatggatgg tagggttact aaaatagaaa
     7621 atattcatca taaagatttg ggtgaatgtg ttgaaattac tattaaaaat gctctttatg
     7681 atgctgggaa ttttaataca ccttttgcaa tgtctataat agatattcgt ttacgacatg
     7741 ggcttttttt gtgcagtgaa ttaaaatctg caaaaatgat gaatgaaaga gcttttattt
     7801 tggcaaaagt taaagagaat aaaacgatag ccttgcgaat ctatgcaggt tcttttgata
     7861 gaaaattaaa gcttgataat atttctcatg atttaaaagc aggagataga atgggttttt
     7921 taattaatgg ctctataagt ttacttttac caaaagatac tagaattcat ataggcttaa
     7981 atgatgaaat taaagcaggt tcattgctag gctattttgc gtaaggaaaa ataatgaata
     8041 acagaccgca actaatttat attttaccca atctttttac agctgcttca gcttttttag
     8101 gggttatttc tattatagct tcaatacatg gaaattatta tacagctttg atttatatta
     8161 ttttatcttt gatttgcgat gggcttgatg gccgtgttgc aagacttaca aattctactt
     8221 caaaatttgg agtagaattt gattctttgg ctgatctagt agcttttgga gttgctccag
     8281 cggttctttt ttatatggcg ataggttatg attttggaaa acttggatct ttgattacag
     8341 ctttttttgt ggtttttgga gctattcgtt tggcgagatt taatgttacc acaggcactt
     8401 atgaaccctc cgtttttata ggtcttccta tacctactgc agcagttgtg agtgctatat
     8461 ggacttatgc gtttatcagt tatgattttt taaagcctta tggcgtagtt tttttggtgc
     8521 ttcaagcaat tttagggctt ttaatggtaa gtaatatacg ttatcctagt tttaaaaagc
     8581 ttgattttaa tcgttctagt gttttaaaag ttttgattat tttaattata atattttcat
     8641 ttttatatct ttaccctctt gaaagtttag taattttagc aagcttgtat gtgctttatg
     8701 gaattattcg ggttttatat accattatcg tttcaaaatt taagataaga aatcaagagt
     8761 aaaatttttc aatgacttcg cattcttctt gagtgaagcc agctttgatt cttgcttgaa
     8821 tgttaagttt ttttcccgca agagagaatt gtttaaatgt tttgcaaagc tcaataaaat
     8881 catacctgtt ttgatttgca aatttccacc aagtatctcc ttttttaacg tgttttattt
     8941 catcattaag tataatttca agatattcca ttagaagatt tttaatggaa tgattggaac
     9001 tttgaagttt ttgaacaaca aaggggttgg catcaagccc tttagcttct aaacctctat
     9061 gaactactcc cattctaaag cttaaagagt cttttgtagc ttctagagca gattctaaat
     9121 tatcatgcac tggaaaattt ccatatttgt aactaagttc tttaagtgct gaatttaaaa
     9181 gtttgaaatg tttaatttcc tcatctgcta cctccagcca atcgtaataa aattgcaaag
     9241 gtagattttt aaagcgataa ctcgcatcta aagccaggtt aattgcatta aattctatat
     9301 gagcgactga atgaattatt ttagcaagcg catgagttga attgacaaat ttaggccttc
     9361 ttatacgcgt aggatgaagc aaggtaattt gttgtgatgt attttttttg aaaatgcttt
     9421 gatgctcgtg attaaaaatc aatttgtggc ttttaaagtc ttcataaaaa ttttgaaaag
     9481 agtgaaattt tatagttata tttttttcat ataaaatatc ttgaagttct tgaaaaaatt
     9541 ctttttgcat ttaaaacttt cttgaaaatt ataaaaattt atcatttaaa attgaaaatt
     9601 taattatata atataaaaat tattttacaa gggtagatca tgaaagaatt aaatgaagaa
     9661 gaaaaaaaag taattttaaa taaaggaaca gaagctcctt ttagtgggaa atataatgat
     9721 ttttatgaaa aaggaatcta tcaatgcaag caatgtggag cttcgcttta taaatccgaa
     9781 gataaattta aatcaggttg tggatggcct agctttgatg atgaaataaa aggggctgtt
     9841 aaaagaattc ctgataaaga tgggattaga accgagattg tatgtgcaaa ttgcaatgga
     9901 catttaggtc atgtttttga aggagaagga ttttctgcta aaaatgtaag acattgtgta
     9961 aattctattt ctttggaatt tgtaaaaact aaggattgat agtgttttct agtatgggtt
    10021 ctgagcttta tttgatgttt tttgctgcaa ttactttact tgctatatta aatccttttg
    10081 gtaatttaac tcaatttttg gctatgagtg atggattgcc tttaatgctt cgaaaaaaac
    10141 tttttagaac tattctctat acagctttta ctatagtttt ggtgttttta tcatcaggac
    10201 ctttatttat gaactatatt tttagagttt cattggatga tttaagggtt tctggtggtt
    10261 tggttcttat tataatggct attaaaaatt tacttttttc aacaaaaatt gcaactaagg
    10321 attttagttc ttatcaagat atggatgata aggaaatttt aagacagagt ttaataccta
    10381 tggcatttcc tatgcttgtt gggcctggaa ctttagctag cgttattgtt atagccgaag
    10441 atggtgggct tgatgttgct cttggtgggg tgatgatagc ttttattttt atgtttatac
    10501 tttttcattt tgcagctact atagaaaaaa tagttggaaa actgatttta catgtttttt
    10561 ctcgtatagc acaagtattt attgctgcta tggggtttaa gatgattatt ataggtttaa
    10621 aggatatatt taacttataa a
//
LOCUS       DARGEY010000049        10444 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.049, whole genome shotgun sequence.
ACCESSION   DARGEY010000049 DARGEY010000000
VERSION     DARGEY010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10444
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.049"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(107..607)
                     /locus_tag="SF008_001048"
     CDS             complement(107..607)
                     /locus_tag="SF008_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233325.1"
                     /translation="MKSDLDIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYEGVLAYIQDKRDEIKIILSELATAITMGETIDNTGIYNSTMD
                     FKNLFK"
     gene            complement(663..1262)
                     /locus_tag="SF008_001049"
     CDS             complement(663..1262)
                     /locus_tag="SF008_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HEG8233326.1"
                     /translation="MLKQLFCILTFIFMLCGCSLRHETINKNENIILKDEGIDSNIFF
                     KKTGKILKIRNANAPLYLNSRAIVYIDNGFSNKYAHYFWGDLPSNLYSFLILSKFEQS
                     NIFTTLLSSTSSLSADYALESRINSFEQILNNNENYAQISISVNFINLENNQIIAHKI
                     FNTKEKIEKKDIHSTYNAFQKALNKIGNEIVFWVNSNLS"
     gene            complement(1262..2152)
                     /locus_tag="SF008_001050"
     CDS             complement(1262..2152)
                     /locus_tag="SF008_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HEG8233327.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGIKAPVRLLGVEVGSVEEISIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFVQLQGGSKNSKDLVSIQGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMADNISLSAQN
                     FNSSLKDIKESTMILKNFIKKADEKLNTYDDIKASLMQNLELFKRVLIESNILIENLQ
                     NSPADLIFKETKPKLGPGEK"
     gene            complement(2155..2877)
                     /locus_tag="SF008_001051"
     CDS             complement(2155..2877)
                     /locus_tag="SF008_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8233328.1"
                     /translation="MVVKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGGSGSGKSVL
                     LKQMLMLEHFDGGEYEILGYKLKNISEEDALALRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDENSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKRFME"
     gene            complement(2878..3987)
                     /locus_tag="SF008_001052"
     CDS             complement(2878..3987)
                     /locus_tag="SF008_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8233329.1"
                     /translation="MNTNFKFQNNTLFIFGIWDKTSIYKLKIKDFLALIQSKEVIFDF
                     KDLKAIDTAGVRFFLALENDLKDKNIKITKEGLNSRFQTLFELCEKNYQRLSKTKKSH
                     KNFSEYFIDLGKLSLELLKILRKFINFTGAFFTSLFLCLKNPKNFRFIAFLYHIENSA
                     FKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLMGISATRELAPLIAAIVIAG
                     RSASSYTAQIGVMKITDEIAAMNTMGFRSFEFIIIPRVMALVVAMPLIVAISDAISII
                     GGMMIAKLNLDISFVEFLRRFREAVDIKHIFIGLAKAPIFGFLIGLIACFRGFEVKNT
                     TQSIGIYTTKSVVNAIFWVIAFDALFSVVLTSAGI"
     gene            complement(3989..5887)
                     /gene="tkt"
                     /locus_tag="SF008_001053"
     CDS             complement(3989..5887)
                     /gene="tkt"
                     /locus_tag="SF008_001053"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEG8233330.1"
                     /translation="MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNDISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFK
                     GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFLLSRQKLRALNEP
                     VFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESTNELEKQGFACNVVSMPCFELFE
                     KQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSK
                     LVNFILSK"
     gene            complement(5897..6742)
                     /locus_tag="SF008_001054"
     CDS             complement(5897..6742)
                     /locus_tag="SF008_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEG8233331.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPKLLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNEKLAQMIQNL
                     IIQYL"
     gene            complement(6739..7833)
                     /locus_tag="SF008_001055"
     CDS             complement(6739..7833)
                     /locus_tag="SF008_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEG8233332.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNTKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWVGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDVYWGDIGVDFVIRENKIYVNNVRKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKITNFTSNLGLTVNT
                     SLVVTKIDPKSKASNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            complement(7830..8141)
                     /locus_tag="SF008_001056"
     CDS             complement(7830..8141)
                     /locus_tag="SF008_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEG8233333.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKV
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            complement(8145..9428)
                     /locus_tag="SF008_001057"
     CDS             complement(8145..9428)
                     /locus_tag="SF008_001057"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HEG8233334.1"
                     /translation="MKLKLENSFITDNTLECEKECFFLQTTQNAKFHAQALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALIQNRIEGLNFAAKIFTNITQ
                     DHLDFHGTFENYKEAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGKIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            complement(9412..9963)
                     /locus_tag="SF008_001058"
     CDS             complement(9412..9963)
                     /locus_tag="SF008_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEG8233335.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENEFEDGHALNYQ
                     DFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIENVMPH
                     FWANDRFIKLQEKLMGFKSEIKT"
     gene            complement(9950..10222)
                     /locus_tag="SF008_001059"
     CDS             complement(9950..10222)
                     /locus_tag="SF008_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HEG8233336.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGIVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
BASE COUNT         3327 a         1770 c         1486 g         3861 t
ORIGIN      
        1 ccctcccctt tttattcgta gcctaactct cttttaagag tttggaaaat ctctttaagc
       61 taaaatatat tatattttct taaagagaac aaacgattac tatttcttat ttaaataaat
      121 ttttaaaatc cattgtagag ttataaattc cagtattatc tatagtttcg cccatggtga
      181 ttgcggttgc taactctgat agaatgattt ttatttcatc tcttttatct tgtatatagg
      241 ccaatacacc ttcgtaatta cttgtttgaa gaattaaaag tggattagca atttcaaatt
      301 caaaaagttt tttaccaaca taaacattga aaatatttcc aaaaagagct gttcccatga
      361 aagagcagtt ttgtataagt tgtgatgctg tggcatcaag agttcttttt tgcatatcat
      421 ctgaattttc atctattctt tctagaatac ttttttctat tttttttaaa gacatatcaa
      481 gcacttgaag tgctcctata aaatcatttg catcattgat ttgagagcaa atttgatttg
      541 ctttaaattc attcacgcct tgaatttcac ctaagtgttt tttaaatata tctaaatcac
      601 ttttcattgt ttacctttca aaaatattgc tcaatattta aaaagcaaaa agtgttccta
      661 aattaggata agttagaatt tacccaaaaa acaatctcat tgccaatttt attcaaggct
      721 ttttgaaaag cattataagt agagtggatg tctttttttt ctattttttc tttagtattg
      781 aaaattttat gagctattat ttgattgttt tcaagattta tgaaatttac gcttatagaa
      841 atttgagcgt agttttcatt gttattaaga atttgctcaa aagagttaat cctgctttca
      901 agagcataat ccgcacttaa agagcttgtt gaagaaagta gggttgtaaa aatattgctt
      961 tgttcaaatt ttgacaaaat taaaaaagaa taaagattgc ttggtaaatc tccccagaaa
     1021 taatgtgcgt atttgttgct aaaaccatta tctatataaa caatagctcg cgagtttaaa
     1081 tacaaaggtg catttgcatt gcgaatttta agaattttac cggttttttt aaaaaaaata
     1141 tttgaatcta ttccttcatc ttttaatatg atattttcat ttttgttgat ggtttcgtgt
     1201 cttaaagagc atccgcataa cataaaaata aaagtcaaaa tacagaataa ttgctttagc
     1261 attatttttc tcctggtcct agtttaggtt tggtttcttt aaaaatcaaa tcagcagggc
     1321 tgttttgtaa attttctatt agaatattgc tttcaattaa aactcgttta aaaagctcta
     1381 aattttgcat caaagatgct ttaatatcat cataagtgtt taatttttca tcagcttttt
     1441 ttatgaaatt ttttaaaatc atcgtacttt cttttatgtc tttaagactg gagttgaaat
     1501 tttgcgcact aaggcttata ttatcagcca tttttcctat ttttaaactt gcgtttgaaa
     1561 gattaaggct taaattttta gaattagcgt ttaaatttgc acttaattct gctagatttt
     1621 gcaaaaggat ttctagattt ttaagatttt tttcgcttaa aagttctttt gatttatcat
     1681 cggccgtttt aactaaagaa aaaatatgtt cactttgtct atctatagtt gctaaaaaac
     1741 tttctttaaa aggaatgact ggaagttttc cctgtataga tactaaatct ttgctatttt
     1801 tacttccgcc ttgaagttgg acaaatttaa gtcctgtgat accttgaagt tgcaaagtag
     1861 caaaagtatc ttcttttata ggggtgttat ttttgacctt gatgcgtatg ttaacgccga
     1921 gttcatcttg attgtaaatg ctgatttctt ctacgctacc tacttccacg cccaaaagcc
     1981 ttacgggtgc ttttatgcca agtcctgcaa cggattcttg tgtgtgaatt tcataatact
     2041 taaaactttc ttctttagag tatccaccaa gccaaagtat gaaaccaagg cttgcaaaaa
     2101 atactccaaa aacaaaaagt cctacaaaaa aataatttgc tctattttcc acttttactc
     2161 cataaatctt ttaaaaagtc gttcattttg caggcgtaat tcttcataag taccgcaaaa
     2221 tccaactttt ttattttcta aaatgataaa acgatcgagt aaatttttca tactttcttt
     2281 atcatgtgta accaaaatga tatttaaatc aaaacttttt tttaactcta aaaccaaatc
     2341 gtcaaattca cgactactat gagggtcaag tcctgaagta ggttcatcta aaaaaagcaa
     2401 tttactatca agtgctaaag ctctagcaat tgccactctt ttttgcatac cgccactaag
     2461 ttcacttgga aattgtttta aaacactttc gtttaagcct accattttta gcttcattaa
     2521 aaccagttct tgtatgctat tttcatctaa atgagtgtat tcttttaaag gaatggcgat
     2581 attttcataa acattaaaaa agctaaaaag tgcagcaaac tgaaaaacca caccccattt
     2641 tttacgcaaa gcaagtgcat cttcttcgct gatattttta agtttatagc ctaaaatttc
     2701 atattctcca ccatcaaaat gttcaagcat aagcatttgt tttaaaagga cggattttcc
     2761 acttccacta cctcctaaaa taccaaaaat ttcatttttt ttgatttcaa aacttacgcc
     2821 atcatggaca attttttctc caaattttgt aatgatattt tgcgctttaa caaccattta
     2881 aattcctgca gaagttaaaa caacagagaa taaagcatca aaagctatca cccaaaaaat
     2941 agcatttaca acgctttttg ttgtataaat tcctatgctt tgtgtagtgt tttttacctc
     3001 aaaaccacga aaacaagcaa taagtcctat taaaaatcca aaaataggtg cttttgcaag
     3061 tcctataaag atatgtttta tatcgacagc ttctctaaag cgtcttaaaa attcgacaaa
     3121 agaaatatca agatttaatt ttgcaatcat cattccgcct ataatactga ttgcatcgct
     3181 aatggcaacg attaaaggca tggccactac caaagccatg acacgtggaa taataataaa
     3241 ttcaaaagaa cgaaaaccca tagtattcat agctgcaatt tcatcagtaa ttttcatcac
     3301 tccaatttgt gcggtataag aacttgcact tcttcccgcg attactatgg cagcgattaa
     3361 aggtgcaagt tctctagtgg ctgaaattcc catcaaatcc actatgaaaa tattggctcc
     3421 aaattgtgcg agttgataag cagcctgata ggctaaaacc actcctacta aaagagcggt
     3481 taaaataact ataggtaagg ctttaaaagc agaattttct atatgatata aaaaagcaat
     3541 aaagcgaaaa tttttaggat ttttaaggca taaaaaaaga cttgtgaaaa aagctcctgt
     3601 gaaattgatg aattttctta aaatttttaa aagttctaaa cttaattttc caagatcgat
     3661 aaagtattca ctgaaatttt tatgtgattt ttttgttttg cttagtcttt ggtagttttt
     3721 ttcacaaagt tcaaaaaggg tttgaaagcg tgaatttaag ccttctttgg tgattttaat
     3781 atttttatct ttaagatcat tttccaaagc aaggaaaaat ctcactccag cggtatcgat
     3841 tgcttttaga tctttaaaat caaaaatcac ttccttgctt tggatcaaag ctaaaaaatc
     3901 ttttattttt aacttataaa tgcttgtttt atcccaaatt ccaaagataa aaagagtgtt
     3961 attttgaaat ttgaaatttg tattcatttt atttgctaag gataaaattt acaagctttg
     4021 aaacgctaaa tccaaagtgt tcaaacacat ctttgtcttt gccgctttct ccaaaacttt
     4081 ctatgccata cactttatgg caaaatttat aaagttcatt agaatgtgct gcttcaacac
     4141 ctataacttc accttttaac aatctttctt gataagcttt atcttgtttt tcaaaaagtt
     4201 caaaacaagg catggaaaca acattacaag caaaaccttg tttttcaagt tcgtttgtac
     4261 tttctaaaca aagccaaact tcacttccac ttgctaaaag tgtaaattta gcctctttgc
     4321 tttctttgag taaatacgct ccatttttta catctccaaa aacaggttca tttagagctc
     4381 tgagtttttg gcgtgaaagc agaaaagcac tcggaatatc agcatttagg gctatttgcc
     4441 aagctttgac attttccacc ccatcagcag gtctaaaggt taaaaaattt ggcatagctc
     4501 taaaagtgct aagttgttct ataggttggt gtgttggtcc atcttcgccc acgcctatgc
     4561 tatcgtgtgt gaaaatgaaa aaatgtttga ttttcattag agctgctatt cttgcggcag
     4621 gttttaagta ctcgctaaag atgaaaaaag ttgccgaaaa tggtaagaaa attccatatc
     4681 ttgcaaaagc attgttaatc gctgccatag cgtgttctct gataccaaaa tggatatttt
     4741 taccttctac aaagtctccc atactgtgaa gttctgtttt attcgaaggg cctaagtctg
     4801 cacttccacc taaaaatcct tctaaatttt tagctaaaac atttaaaatt tcaccattac
     4861 tatctcttgt agcaagatct tttcctttaa aatcaggata agctatcttg ttaaaatcag
     4921 gatttaatag cctttctaaa agttcttttt tagcactttt ttcaagctta tctttccatt
     4981 ttgcttcttc taaatcccca agttctacag cactttcaaa gcggattttg cttgcttgtg
     5041 ggatatgaaa actgatattt ggatcaaaac ctgcttgttc tttggctttt ttaatcactt
     5101 cttcacccaa aggtgcgcca tggcttttat gactgccttc aagctctcct gcaccctttg
     5161 ctatagttgt ttttgcgatg ataagacaag gttttgtgga ttttttagct tgttctaagg
     5221 ctttattaat ttcttcataa tcgtgtccat ttatacttaa aacttcaaat ccttgtgctt
     5281 caaaacgcat ttttacattt tcgttaaagg ctaaacctac atcgccttct atggagatat
     5341 cgttgctatc ataaataagt atgaaattat caagtttgtg aagtcctgct aaagaacaag
     5401 cttcataaga aatgccttct tgcaaatctc catctccgca aagacaataa attttatgat
     5461 cgattaaatc actacctagt aaattttgtg ctttttttgc cgccatagca aagcctacag
     5521 cattggcaac gccttgtcct aaagggcctg tagcaatctc tactccaaga gttgaaattt
     5581 cagggtgtcc tggggtttta gaatgaagtt ggcggaaatt tttaagatct tctaggctta
     5641 aatcatagcc acttaaatgt aaaaaactat aaagtaaagc acttgcatgt ccacctgaaa
     5701 atacaagtct atcacggttt agccaagttg gatttttggg attgtgtttt aaatgataac
     5761 ttaaaacact taaaatatct gctaagccca aaggtgcacc tgggtgtcct gagtttgctt
     5821 tttgcaccat atcggcactt aaaaatctta gagtatttgc ctgttcttgt aaaatttgaa
     5881 tgtccatttt ttgcctttat aagtattgaa ttattaaatt ttgtatcatt tgtgcgagtt
     5941 tttcattaag tttttctaaa tcttgttcgc attcactaag aagattttct tttgttttta
     6001 tggcttgttc aagtccaagc aaattgacaa aagaattttt atgaatatcg ttattagtag
     6061 gctttccgct ttgttcttga cttgtggtta catcgataat atcatcattg atttgaaaaa
     6121 tcagtcctag ttttaaacca agtttgtaaa tttgattgct ttcttcgttg ttaagttcgc
     6181 aaatttcaca acccattttt aaagctgcag cgattaatct tgcggtttta tgtgtgtgta
     6241 aaaactcaag ttcatttaaa ctcagtcttt tgtcttcaaa aaaacaatca atagcttgtc
     6301 ctatgaccat tccattaagt cctgcattaa aggcaagggt tttgatgagt ttgattttga
     6361 tttcatcttt taaatgagca tgacttagaa ctaaaaaagc ttcagtattt aaagcatcac
     6421 ccactaagat ggctgtagtt tcatcgtagc ttttgtgtaa ggttggaatt cctcgtctaa
     6481 aatccgcatt atccatagcg ggtaaatcat cgtgtatgag tgaataagta tggataaatt
     6541 ccaaagctaa agccacatct aaagcttgat ttaaaagttt aggtttattg ctttgtacta
     6601 cgcttaaaag caattgtgca cgaaaatgct tccctcctgc ttttagcata agagctaaag
     6661 cttcattaaa aaaaggatga aagctttcga ctttaggtag atttttttct aagtgatgga
     6721 taaaaagttc ttttaaattc acttagtaag ccttatgaaa aattgaaatt taccatcgcc
     6781 acctgagttg gcatttccgc ctagttcatt gttgaaattt gataaaggta atttagtact
     6841 tttgcgttca attaagatgc taaagtcatt accagcgctt aaaatatttt gtaattcttt
     6901 aaaattattt aaaataatat tattaacgcg taaaatttta tctcctacca taaatcctgc
     6961 atttgatgct tttgattttg gatctatttt ggttacaaca agactagtat taaccgttaa
     7021 accaagattg cttgtgaaat ttgtaatttt tggttttggt ttagaatcag gaaggttaaa
     7081 tttgctcaaa tcttttgcaa aaacttcagt agaaatattt aaatccatat tatcacgtaa
     7141 cacttgaaaa taaagagtgc ttccgcgatc tgcaaaaaga attttttcat tgagttttct
     7201 taaatcattg gcgggtaaac catcaacact tataacttga tcgttgatta aaaattgtgg
     7261 attttttctt acattgttaa cataaatttt attttctcga ataacaaaat caacgccaat
     7321 atccccccaa taaacatcgt tatatttcat aaaatgtttt aaatagcgat tgcctataaa
     7381 agagctatta tttaaagcaa tccccatcat ttcacagcac ggagtcccta aaagtcctat
     7441 tttagaatta aaatcaagtt gatctttttc atcaatattt tgagctaaat acttaatatg
     7501 tcctatatag ggtttattag gatcccaaat tccaacccaa tcattacgag taagtttttc
     7561 ttcatcaccc ataggagtag ggattaggct aaagtcagtt cttacaaggt ataaatttaa
     7621 aaatggatcg tattttacat atttgttaag cttagtatta ggctgtttta acacagcaag
     7681 taaattttca ctgagtgcaa aagctggcat tccttcatag ttaagcatgc ttgccttatt
     7741 tctttcataa cctgctaaaa aatcttcaaa tttaggtctt tctataccaa aagacaaagt
     7801 aaaaagcata caaataatta aaattttttt cataatttca tacctccaaa accgcctaaa
     7861 acatcattcg ccatacttga acgattttgc gcaaccatag ccaaaacatc attaattgca
     7921 gaaataagta aaatttgcaa ggattcttta tcttcaagta aagaatcatc aatgctaaca
     7981 tcgataattt caccctttcc attggcactt actttaacaa gtcctgctcc acttttggca
     8041 ctaaattcac gatttgcaag ttctagttct atattttttg ctttttcttg aacttgattt
     8101 aaaagttctc ccattttaga aaaatccata ttttcaaaca ttgattatcc ttgatttttt
     8161 aaaatttcat taacaactac tttatcacta aaaggatatt ttatcccttt aatttcttga
     8221 gtagtttcat cacctttgcc taaaataacg actaaatcgt cattttcttt tagttctaaa
     8281 gcttttttta tagcttcttt tctatcttct atcattaaaa ctttttcttt tttagtaaag
     8341 cctgataaaa tttcttccat gatggttttt ggttcttcac tgcgtggatt gtcacttgta
     8401 atgatagcaa tttttgcaaa atgttcgacg atttttccca ttaaagggcg tttggtttta
     8461 tctctatctc cacctgctcc aaaaacaacg atgagttttt tatttttaag agtgtcaagc
     8521 actttttcaa tgccatcagg cgtatgagca aaatctacaa tcacgccttt tgctacttgt
     8581 tctaccctgc cacaaacccc gccaaatcca ctgatagctt tttccaagtc ttttaaatca
     8641 ggctttacga gttcattcac acaagcacta gcaactagaa gattgtaaag attaaaaagt
     8701 cctagcaagg gcgagtctat gtgaaaagtt tgatttttat ttgttacaat agcactaatg
     8761 ccttcttcta aagaataagc tttgatttga tataaagcag gattttctat gccataagta
     8821 aaagcattac gcacattaaa tttaatagcc aaagcatctt tgttgataaa ttttaaactc
     8881 tcatcggtaa aaaaaagttc ttttgcttct ttataatttt caaaagtacc atgaaaatct
     8941 aaatgatctt gagtgatatt ggtaaaaatt ttagcagcaa aatttaagcc ttcgatgcgg
     9001 ttttgaatta aggcgtgtga gcttacttcc atgatgaaaa aatcacattt tttttgagtg
     9061 gctatttgta ggtattctaa ggttttaaga ataggggagg tggttaagga tttttcatcg
     9121 atttgttcat cgttgataaa agctcctctt gtcccacaaa gcccacactt ataacctaaa
     9181 tccaataaga tagaataaat cgctgctgcg gttgtggttt tgccattggt tcctgtgatt
     9241 cctatgattt gaatcttttc atcgattttt aaaagttttt tacactcatt tacatcaatg
     9301 atttttgcac ctttttctaa ggcttgagcg tgaaatttag cattttgtgt ggtttgcaaa
     9361 aaaaagcatt ctttttcaca ctctaaggtg ttatctgtaa tgaatgaatt ttcaagtttt
     9421 aatttcactt ttaaatccca tgagtttttc ttggagtttg ataaatctat catttgccca
     9481 aaaatgaggc ataacatttt ctatgtaatt taaagtcata tctttatagc cattatcaag
     9541 taatttttcc aaaaaatcta aaaaatcatc acgattatca ataactaact tagtgctgtt
     9601 aatgatattt tcaaaacttt tttgaaagcc aagttcttct tcgcttttta aaaaatcttg
     9661 ataatttaac gcatgcccat cttcaaattc gttttcctgt ttgttttctt gttttttaaa
     9721 ttcaattgta cttaaaattt cttctaagtc tttatcaatg ctagagattt tgtaatgttc
     9781 tatataaaaa tcaaaaagta aagaagcttc tttaggagat tttaaagcaa gatcacaaag
     9841 gcagataaaa tttagcaagc gtttattttt gcgtttttca taagccatag aaaaatacat
     9901 ttttgcagtt ttaaaatctt tcttgtaaaa atgttcaatt ccaagttttt tataattttg
     9961 caaattcgtc tgctccgccg tttaaattga ttatagtgat ttctggatga atatcaatct
    10021 taagttgcct ttcaagacca tattttagcg ttgttccact cgatgcacag cctttacaag
    10081 ctcctattaa atggacataa acaatcccat ttttaattcc taaaaattca agccctccgc
    10141 catcacgttc aagcataggc aagctctttt ctaaacttgc tttaacagga tttataagct
    10201 cttcatcact aaaaggcatc ataatttatc cttaaaaatt tttatatact ttagcgtgat
    10261 tgtgtttaaa aaaaggtaaa ttaaggcttg aaatttaaat aaattaaaaa ggttcgtcat
    10321 tattttgtat gctaaatcct aaatcataag ctgtaaagtt tttgttacca aaaattccat
    10381 ttaagtttct aaatgattgt tgcagaattt cttcgttttt ttcatatttt aagaagctta
    10441 aata
//
LOCUS       DARGEY010000050         9885 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.050, whole genome shotgun sequence.
ACCESSION   DARGEY010000050 DARGEY010000000
VERSION     DARGEY010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9885)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9885)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9885
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.050"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(104..433)
                     /locus_tag="SF008_001060"
     CDS             complement(104..433)
                     /locus_tag="SF008_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HEG8233337.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLEAADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQKEKNK"
     gene            complement(430..1704)
                     /gene="hemL"
                     /locus_tag="SF008_001061"
     CDS             complement(430..1704)
                     /gene="hemL"
                     /locus_tag="SF008_001061"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEG8233338.1"
                     /translation="MTNKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVAKHTLVAKYNDINSVKELFEKNKDIACVIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYDKLGKLAKKLTQGM
                     KKLADEKGLPLQACHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLA
                     PSQFETGFICSKMDDKIIDTTLEAVRESFKRI"
     gene            complement(1701..2048)
                     /locus_tag="SF008_001062"
     CDS             complement(1701..2048)
                     /locus_tag="SF008_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233339.1"
                     /translation="MKIVLMFFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGA
                     DGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            2128..2976
                     /gene="folD"
                     /locus_tag="SF008_001063"
     CDS             2128..2976
                     /gene="folD"
                     /locus_tag="SF008_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HEG8233340.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDNPAS
                     QTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGAMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDM
                     VKEGVIVVDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            2986..3834
                     /gene="lepB"
                     /locus_tag="SF008_001064"
     CDS             2986..3834
                     /gene="lepB"
                     /locus_tag="SF008_001064"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEG8233341.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGPQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIVYANKTLYVRMHEGDKFMKEHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPAYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDKNKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(3856..5016)
                     /locus_tag="SF008_001065"
     CDS             complement(3856..5016)
                     /locus_tag="SF008_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEG8233342.1"
                     /translation="MKNIFETLKDLENQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNAALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDEYIEENKLIIKKAPKQYNAYRYKGEELKKGEILLQKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNANALPLLTMLQNASYLGIIKDDF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GENFVLILPGNPMAAYLSCFIFAKKIINLLSGNLDNPLTFYGKMGMDLKLKSGRNNLI
                     LGNLEKGIFTPFNENKFGSGMILPLIKSEFLLISEENTSELKKGDEITLLKI"
     gene            complement(5013..6269)
                     /gene="murA"
                     /locus_tag="SF008_001066"
     CDS             complement(5013..6269)
                     /gene="murA"
                     /locus_tag="SF008_001066"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEG8233343.1"
                     /translation="MTYLEIEGTNHLSGNVTISGAKNAALPLIVSSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKVNFQNNSALLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAKGKTKLLNVAKEPEVVQLCEVLKDAGLEIKGIGTDELEIYGSD
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLI
                     TEDSITLLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALAAKGTSKVHRI
                     YHLDRGYENLEEKFKDLGAKITRLEE"
     gene            complement(6335..6763)
                     /locus_tag="SF008_001067"
     CDS             complement(6335..6763)
                     /locus_tag="SF008_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233344.1"
                     /translation="MQINNSLNSLSQYVKVNSNEENQNSKNQEQNALAQDPAVEVNIS
                     KEAKEKSNTSNQNNSQAPAQALNAQNNTQQDSSSNSEDKLTELTQKLAEIQAKIVELT
                     AKMSKANEDQIKSIESQIATLNAQASTIQAQIQELQSQQA"
     gene            6858..7730
                     /locus_tag="SF008_001068"
     CDS             6858..7730
                     /locus_tag="SF008_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEG8233345.1"
                     /translation="MGVFLVLLGGIFWAISGVLAEYLFKNNYSVDWVCFYRLLSTGLI
                     LIFLSFKAQKILVFTNLKESLSICMFGFFGLLLTQFGYFKAIYYTDAGTATMIQYCAP
                     LIIMLYLCFKNKKFPKLIEIFALILIIFALFLLATKGDIEAVVLNYWGIFWAVIGAFG
                     VAFYSLSAREVILKYGLFWIMGWASLFASFVFLLILQFDKGLIHYAFNLKAFFSMGGI
                     VFIGTIGAFCLYLKGVEYIGALRASMIASIEPVAAALMSFLFLKTRYSLLDIFAFVLI
                     ILSVILNAKKTKVS"
     gene            complement(7717..8283)
                     /locus_tag="SF008_001069"
     CDS             complement(7717..8283)
                     /locus_tag="SF008_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEG8233346.1"
                     /translation="MKKILFIDNYDSFSYTIIYYLKELGFECKVIKNDAFKKAKELEK
                     FDFTHLIISPGPHSPKESKLSLKAIKYFKKNKKILGICLGHQCIAEIFGGRVSKMQNP
                     MHGKISKLYFKKDPIFKGIKKEIEICLYHSLHISSMSEKCKILAHNSENIIMAIKHKK
                     YPIYGLQFHPEAVLTQKGKKILKNFMKL"
     gene            complement(8280..>9885)
                     /locus_tag="SF008_001070"
     CDS             complement(8280..>9885)
                     /locus_tag="SF008_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HEG8233347.1"
                     /translation="NFTSKKAYLSVFAFKKRKKFQKEDIDEEKFIPEFINFLDQDNYK
                     ENFIKVKEAISKGRVYQINLTQNFKFHSKMDSFELFKLLLSRQDTEFKAFIKDETREI
                     LSFSPELFFKTKKRKIFTKPMKGTIKRDKDPIKDEENKIFLQNDTKNLSENVMICDLL
                     RNDLSKIITKKSLKTKLFEIQSHPTLHQMTSSVQGKLKKNISLYQIFKALFPCGSITG
                     APKLESIKFIEELEQRDRGIYCGTIGLIHKNKNKFSVAIRTLEKQDEIYTYSTGSGLV
                     WDSKFKDEFEELKLKSAILNPCDFHLFETMYFKNSQILFLKEHLLRLINSALKFNFNT
                     HKLFKDFYNVLNQKSSYKEYQNFTLFKLDEKIFHKKHSLFYNFPLPFKNPHKEGILKL
                     ILYKDGRYEFQQSALKQNSNDILLLSDDKINSKSDNLYHKSSLRTFYNQHSYKWQQNL
                     CYDIAFFNEKDELCEGSRTNLILEKNSQFYTPQIQSGMLNGVYRNFLINLGLIKEKAL
                     FKQDLFEAENIYCINSVRGLKKVKLQ"
BASE COUNT         3113 a         1441 c         1565 g         3766 t
ORIGIN      
        1 cttaaaaata tatctaattt aaaatgattt aacaatgaaa atatgatcca aaaaaataaa
       61 tgaataatgg caaaaataca aaatagagct tttttatgtt ccattatttg ttcttttctt
      121 tttgaatttt ttctttgatc aactcatctc tttctttaaa ttcttcatag ctttttactt
      181 gaactttata agctttgtaa acattaagta tagcagcact gatcccccaa aaaactccaa
      241 gccaaaaaag ccaaggataa ggagtaaatt ttttaagtaa atatcctatt cccacaccta
      301 taaatacagc aacaaccata gagatgccaa gacttaaacc atccgcagct tcaagagttt
      361 tgcgaatgat tttttgtctt ttgctgttgg aattttctaa gtgatttttt tcttctttta
      421 aaatattgct catattcttt taaagctttc cctaacagcc tctaatgttg tatctataat
      481 tttatcatcc atttttgaac atataaagcc tgtttcaaat tgagaaggtg ctaaataaat
      541 tccattttca agcatatttt tgtgaaattt tgaaaataat gctagatcag attttaatgc
      601 atcttggtag tttgatacag gatctttggt gaaaaagtat ccaaacatag aacctacatg
      661 acaagcttgc agcggaagtc ctttttcatc tgctaatttt ttcattcctt gtgtaagttt
      721 ttttgctaat tttccaagtt tgtcataaag cttggttttc tttttggctt ttgtaagact
      781 tgctatacct gcagccattg ccaaaggatt tccacttaaa gttcctgctt gataaactcc
      841 acccaaagga cttaaaatat ccataatttc agctctagaa gcaaatgctg ctgcaggtag
      901 accgcctcct attaccttac caaaagtaat tatatctgct tggatatgat tgattccata
      961 ggaaccaagg taagatgctc tatatccact cattacttca tcaaaaatca gcagagtttg
     1021 attgttttta cagatcttag caagttcttc taaaaaatct tgtttagctg gaactaaccc
     1081 catatttcca gcaataggct caatgataac acatgcaata tctttatttt tttcaaaaag
     1141 ctctttaacg ctatttatat cattatattt agctactaaa gtgtgtttag ctacatcttc
     1201 taaaacaccc aaagaactag gagagttaaa agtagcagca ccacttcctg cactcactaa
     1261 taatgaatca gaatgcccgt gataacatcc ttcaaatttt aaaattttat cttttttagt
     1321 aaaaccacgg gcaagacgaa tagcactcat ggttgcttct gttccactgc ttacaaagcg
     1381 gatcttttct aaatgaggaa aatcagataa aacaagcttg gcaagttcag tttctaataa
     1441 agttggagct ccaaaacttg aacctttatg aagtgctttt tgacaagctt tttgtatatc
     1501 tttatcgcaa tgtccaaaaa gcaaaggccc ccagctttga acatagtcta tataagaatt
     1561 tccatctata tcgaaaatat aagcaccttt tccatgagaa ataaattttg gctcactttg
     1621 aacatttgca aaagcacgaa ctggagaatt tacaccacct gcgatgaatt tacacgcttc
     1681 tttaaaagct tttttgtttg tcatttttct tccttgctaa attgcttgat gtaattatat
     1741 aaagttacaa tttcatcatt tgttaaagag taatttggca tgattgattt tgcgtcttta
     1801 ctctgattaa gagaattttt aaaattttca aaactaagat tttgtatact tggaacttta
     1861 taagctgttt taataccatt tttcatataa tatcctaaaa tttgttcgct tccatctgct
     1921 ccatgacatt ctttacaact aatgcccctt ggattttcat aaagcatttt agagtattct
     1981 ttaagagtga taaaatcagc accaaaaaga ctaatactaa ataaaaaaaa cattaaaaca
     2041 attttcaaag tttcaccttg ttaatgaagt tttaatatga tacaattttt actttaaaaa
     2101 agtgattaaa tttatagaag gaaaataatg actttgcttg atggtaaagc tttaagcgca
     2161 aaaatcaaag aagaattaaa agaaaaaaat caatttttga aaagcaaagg gattgaaagc
     2221 tgtttagctg ttatcttggt tggagataat cctgcaagtc aaacttatgt aaaatctaag
     2281 gctaaagcct gtgaagaatg tggaattaaa tctttagttt atcatcttaa tgaaaatact
     2341 acacaaaatg aacttttggc attgattaat accttaaatc acgatgatag tgttcatgga
     2401 attttggttc agcttccctt acctgatcat atttgtaaag atttaatact tgaaagtatt
     2461 ataagtagta aagatgttga tggctttcat cctattaatg taggatattt aaatttaggc
     2521 ttagaaagtg ggtttttgcc ttgtactcca cttggagcta tgaagctttt gaaggcttat
     2581 gaaattgatt tagaaggaaa agacgctgtt attataggtg cttcaaatat agtaggtcgt
     2641 cctatggcta ctatgctttt aaatgctgga gctacagtaa gcgtttgtca tattaaaacc
     2701 aaagatttga gcctttatac taggcaagct gatttgatta tagtagcagc aggttgtgtg
     2761 aatttacttc gatcggatat ggtaaaagaa ggagtgattg ttgttgatgt tggaatcaat
     2821 cgtcttgaaa gtggaaagat agttggagat gtagattttg aagaggtatc taaaaaatct
     2881 agttatataa ctcctgttcc aggtggagta ggtcctatga ctatagccat gcttttagaa
     2941 aacacagtta aatctgctaa aaatagactt aattagggaa aatctatgga aattttaaag
     3001 aaattatata aattttcaca gtcttggact ggaactgtag ttattgttct tttggtgatt
     3061 tttttcttta tacaagcttt tgttattcct tctggttcta tgaaaaacac cttattagta
     3121 ggggattttt tatttgttaa aaaatttagc tatggtatcc caactcctca tattccttgg
     3181 ttggaaattc ctgttttgcc ggattttaat aaagatgggc atttgataaa agcacaaggg
     3241 ccacaaagag gagatatagt tgtttttaga aatcctagaa atgaaaaaga acactttgta
     3301 aagcgttgtg taggcacagg aggagatagg atagtttatg caaataaaac actttatgta
     3361 agaatgcatg agggtgataa atttatgaaa gaacattatc cgaatgatct tgttactctt
     3421 ggagggcaaa tttatgtaaa agaaccttat aaacaaaaag gtattcatta tgatccaaaa
     3481 aaagatatag aaagcgatat tttacgcttt cttagcatag gtgattttgc catgtctcca
     3541 gcttatatta aagaacttgg aaatcatata ggttttagcg gcggaaatgc ttatgttttt
     3601 gatgtacctg aaaatgagta tttcatgatg ggtgataatc gcgattattc ttatgatagt
     3661 cgtttttggg gttctgttcc ttataggttg atagtaggta aaccttggtt tgtatatttc
     3721 tcttgggata aaaataaaaa tgttcgctgg gaaaggatag ggcgttttgt tgataccttg
     3781 gaaaatgatg agcaatatat ccatgatcat gatgatgagg ataaattaag ctaatgtttg
     3841 tgaaaaacac aaacattata tttttaaaag cgtgatttca tcaccttttt ttaattcact
     3901 cgtattttct tcgcttataa gcaaaaactc acttttaata agtggaagta tcataccaga
     3961 gccaaatttg ttttcgttaa atggtgtaaa aatacctttt tctaaatttc ctaaaatgag
     4021 attatttctt ccgcttttaa gctttaaatc catacccatt ttgccataaa atgttaaagg
     4081 attgtctagg tttccactta ataaattaat gattttttta gcaaaaataa aacaagaaag
     4141 ataagctgcc atagggtttc ctggtaaaat caatacgaaa ttttcacctt ttctataaag
     4201 cttagtaggt cttgcagggc gtgcttttaa acctttaaaa agcggagtaa agcctaattc
     4261 atctaaagct ttttccataa aatcagcctc gccaacgctt gcacctcctg aagtgattaa
     4321 aagatcaaaa tttgtatttt ctaaagcctc tttagtgctt ttaaaatcat ctttgataat
     4381 acccaaataa gaagcatttt gaagcatagt tagtaaaggc aaagcattgg cattataaat
     4441 actttcttca tcgcattctt gccaaggttc ttttagctca tttccacttg aaaaaatacc
     4501 tatgcgaatt tttcttatga cttctatttt ataaagccct tgagaagcaa gcagggcgat
     4561 atgtttatca ttaagtttgg tacctttttg aagtaaaatt tcaccttttt ttaattcttc
     4621 acctttatag cgataggcat tgtattgttt aggagctttt ttaatgatga gtttattttc
     4681 ttctatatac tcatcttcta gcattaagat agtatcagca tttttgggca ttttagcccc
     4741 tgtcatgatt ttatagcatt catttttagc aactgtataa aaatttttat ctcctgcaaa
     4801 aatagtccct ttaatctcca aagcctcatt gatatcagta taattaaaag catagccatc
     4861 aagagcagca ttgtcaaaac taggtagatt ttttctagcg tataaatctt tagctaaaat
     4921 tctatccttt gctttttcaa ggctaataag ctcactttca tctaaacatg aaatttgatt
     4981 ttctaagtct tttaaggttt caaagatatt tttcattctt caagccttgt gattttcgca
     5041 cccaaatctt taaatttttc ttctaaattt tcataacccc tatcaagatg gtaaattcta
     5101 tggactttgc ttgtaccttt agctgcaaga gctgctaaga taagggctga agaagcgcgc
     5161 aaatctgtag ccatgacatc agcagcgtta agttcttttc cgcctactat agtagcaata
     5221 tgaccattga gtttaatatc cgcacccatt cttaaaagtt cacttacatg catgaaacga
     5281 ttttcaaata gtctttcatc aataatacta gttccattag cttttaaagc tagtgccata
     5341 aactgcgctt gcatatcggt tggaaagcct ggatattcac ttgtcatgat ttctacaggt
     5401 ttaatttctt tagcaggaag tagggtgata ctatcttctg taatcaaagt ttcaaaaccc
     5461 atttgatgaa gttttgctaa aactgcacta agatgagtgg cgttaacttt atctaaagta
     5521 attttagaat ttgtaatagc ccctgcacaa agataagttc ctgcctcaat tctatcaggt
     5581 ataacgctaa attctttaaa ttctaaaagt tctccatcgc taccataaat ttcaagttca
     5641 tctgtaccta tgcctttaat ttcaagtcct gcgtctttta aaacttcgca aagttgaact
     5701 acttcgggtt cttttgcaac atttaagagt ttggttttac ctttagctag agctgctgcc
     5761 atgatgatgt tttcactacc tgtaaccgtg attttatcaa aaagaatttc attgcctttt
     5821 aaatttccac tagctacgac atagccttgt ttgatttgta tatttgcccc cattttttct
     5881 aaggctaaaa gatgtaaatc aataggtctt tgtcctatgg cacatccacc aggcaaagat
     5941 acttcacaat gcccaaaacg agcaagcaaa ggccctagag taagtataga agcacgcatt
     6001 ttacgcacaa tgtcatattt agctatggtt tgattaagag tgtttgtgtt taataaagca
     6061 ctattgtttt gaaaattgac tttagctcct aaattttcta gcaaagatat aagagttttt
     6121 atatcagcaa cattaggaac attgttgatt tttacttcat ttttagcaag tatacttgaa
     6181 acgatcaagg gtagggcagc attttttgct ccgcttattg taacatttcc gcttagatga
     6241 tttgtgcctt cgatttctag ataagtcata tttttccttg aaaaagttta aaaatgcatc
     6301 attatagcat tcttaaactt ttgaaaaaat ataatcaagc ttgttggctt tggagttctt
     6361 gaatttgagc ttgaatagtt gaagcttggg catttaatgt tgctatttga ctttcaatac
     6421 ttttgatttg atcctcatta gctttagaca ttttcgcagt tagttcaaca atttttgctt
     6481 gaatttctgc aagcttttgt gttaattctg taagtttatc ttcactattg ctgctactat
     6541 cttgttgcgt gttgttttgt gcgtttaaag cttgagctgg agcttgagaa ttgttttgat
     6601 tagaagtatt tgatttttct ttggcttctt tgctgatatt tacctctaca gctggatctt
     6661 gcgctaaagc gttttgttct tgatttttag agttttgatt ttcttcgttt gagttgactt
     6721 taacatattg acttaagcta tttaaggaat tgttaatttg catattttct ccttaattta
     6781 taatatatat tacactaaat cgacattatt ttaaaaaaat atactataat ttaaaataat
     6841 ttttattaag gtttgcaatg ggcgtatttt tagttctttt gggaggtatt ttttgggcta
     6901 ttagcggtgt tttagctgaa taccttttta aaaataatta tagcgtagat tgggtttgtt
     6961 tttataggct tttatctaca gggttgattt tgattttttt aagttttaaa gctcaaaaga
     7021 ttttagtttt tacaaattta aaagaaagct taagtatttg tatgtttgga ttttttgggc
     7081 ttttgctaac acaatttggt tattttaagg ctatttatta taccgatgct ggaactgcaa
     7141 caatgataca atattgtgca cctttgatta taatgcttta tttgtgcttt aaaaataaaa
     7201 aatttcctaa attgatagaa atttttgctt tgattttgat tatttttgct ttgtttttgc
     7261 ttgcaactaa aggagatatt gaagcggtgg ttttaaatta ttggggtatt ttttgggctg
     7321 ttataggagc ttttggagtt gctttttatt ctttaagtgc tagagaagtg atattaaaat
     7381 atggtctttt ttggataatg ggctgggcga gtctttttgc ttcttttgta tttttattaa
     7441 tcttgcaatt tgataagggt ttaattcact atgcttttaa cttaaaagca tttttttcta
     7501 tgggcgggat tgtctttatc ggaactatag gggctttttg tttgtattta aaaggagtgg
     7561 aatatatagg tgctctaagg gctagtatga ttgcctctat agagcctgta gcagctgctt
     7621 tgatgagttt tttattttta aaaacccgtt atagcttgct tgatattttt gcttttgttt
     7681 tgattatatt gagtgttatt ttaaatgcaa aaaagactaa agtttcataa agtttttaag
     7741 tatttttttg cctttttgag ttaaaaccgc ttcggggtga aattgcaatc cataaatagg
     7801 atatttttta tgtttaattg ccataataat attttctgaa ttatgagcta aaattttgca
     7861 tttttcagac atggaactaa tgtgtaaaga atgatataag caaatttcaa tttctttttt
     7921 aataccctta aaaataggat cttttttaaa ataaagttta gaaattttac catgcatggg
     7981 attttgcatt ttagaaaccc taccgccaaa aatttcagct atacactgat gtcctaaaca
     8041 tatacctaaa atttttttat tttttttaaa atatttgatt gcttttaagc ttaatttaga
     8101 ttccttagga gaatgagggc caggagagat gataagatga gtgaaatcaa atttttctaa
     8161 ttctttagct tttttaaagg catcattttt tatcacttta cattcaaaac caagttcttt
     8221 aagataatag atgatggtat aactaaaaga atcataatta tctataaata aaattttctt
     8281 cattgtaatt ttaccttttt taaaccacgc acggaattaa tacaataaat attttctgct
     8341 tcaaataaat cttgtttaaa taatgctttt tcttttatca aaccaagatt gattaagaaa
     8401 tttctatata ctccatttaa cataccgctt tgaatttgtg gagtataaaa ttgagagttt
     8461 ttttctaaga tgagattggt tcttgagcct tcgcaaagtt catctttttc gttaaaaaaa
     8521 gctatgtcat aacacaagtt ttgctgccat ttgtatgagt gttgattata aaaagtacgc
     8581 aaagagcttt tgtgatagag attgtcactt tttgagttaa ttttatcatc acttaaaagc
     8641 aaaatatcgt ttgaattttg ctttaaggca ctttgttgaa attcgtatct tccgtctttg
     8701 tataaaataa gctttaaaat tccttcttta tgtggatttt taaagggtag gggaaaatta
     8761 taaaataaag agtgtttttt gtggaaaatt ttttcatcga gtttaaaaag tgtaaaattt
     8821 tgatattctt tataagaact tttttgattt aaaacattat aaaaatcttt aaagagcttg
     8881 tgagtattaa aattaaattt aagagctgaa tttataagcc ttaataaatg ttcttttaaa
     8941 aataaaattt gagaattttt aaaatacatg gtttcaaaaa gatgaaaatc acaaggattt
     9001 aagatcgcgc ttttaagttt taattcttcg aattcatctt tgaattttga gtcccaaacc
     9061 aagccactac cggtgctata agtataaatt tcatcttgtt tttctaaggt gcgtatggct
     9121 acgctaaatt tatttttatt tttgtgtatt aaacctatag ttccgcagta aataccacga
     9181 tctctttgtt ctaattcttc aataaattta atactttcaa gctttggagc acctgtaata
     9241 gaaccacaag gaaagagagc tttaaaaatt tgatataaag aaatattttt tttaagtttt
     9301 ccttgtacac ttgaagtcat ttgatgtaaa gtagggtgac tttgaatttc aaaaagtttt
     9361 gtttttaagc ttttttttgt gatgattttt gaaagatcgt tgcgtaaaag atcacaaatc
     9421 ataacatttt cactcagatt ttttgtatca ttttgcaaga aaattttatt ttcttcatct
     9481 tttataggat ctttatcacg cttaattgtg cctttcatag gttttgtaaa tatttttctt
     9541 tttttggttt tgaagaaaag ttcaggagaa aaggataaaa tttctcttgt ttcatctttt
     9601 ataaaagctt taaattcagt atcttgtcta gaaagcaaaa gtttaaaaag ttcaaaagaa
     9661 tccattttgc tatgaaattt aaaattttga gtaaggttga tttgataaac tcttcctttg
     9721 gagattgcct ctttaacctt gatgaaattt tctttgtaat tatcttgatc taaaaaattt
     9781 ataaattcag gaataaattt ttcttcatcg atatcttctt tttgaaattt ttttcttttt
     9841 ttaaaagcaa atacagacaa ataagccttt ttgcttgtga aattt
//
LOCUS       DARGEY010000051         9615 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.051, whole genome shotgun sequence.
ACCESSION   DARGEY010000051 DARGEY010000000
VERSION     DARGEY010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9615
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.051"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            203..1042
                     /locus_tag="SF008_001071"
     CDS             203..1042
                     /locus_tag="SF008_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG8233348.1"
                     /translation="MKKILLSVLTTFVAVVLAACGGNSDSKTLNSLDKIKQNGVVRIG
                     VFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPQRAEQVDFCLPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            1083..2330
                     /locus_tag="SF008_001072"
     CDS             1083..2330
                     /locus_tag="SF008_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8233349.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVMAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFIKVQNEKKIL
                     SFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYRICFIFSIAFIIFGVLFSFYDENFLFYFLLACFAQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYAILGFLTPFIVNAFYKEYLGIYLAIVGSCS
                     LLCVFLLKRVFVRSKIKELSIVF"
     gene            complement(2313..3581)
                     /locus_tag="SF008_001073"
     CDS             complement(2313..3581)
                     /locus_tag="SF008_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEG8233350.1"
                     /translation="MQNVIENFKQLCKIPHCSYETEQMKEFLSSYGKDKGFKVSVDKA
                     GNIHAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNGIGIAIMMS
                     AMAEFENLECLFTNDEEVGLMGVNSLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEA
                     SLSFNTLRKKGKIYELCAQNFKGGHSGINIIRNEKSSIKEMAKFIQENEGEIISFEGG
                     ERINSIPKHAKALVHFKDEVKSNDWIKCEFKEENEFEICDQSKKLLSLINSFTHGVRA
                     YDENLDIVQTSINLATLRMQDNQIKFALFARSNILDGLKQVEFETLEFFKAFDFKVRS
                     FNFYPPWEGKPNALSDMVFKALKKVSPNAKVSAIHAGLECGIIEKKQELLCASIGPNI
                     HNPHSTDEHCEIASVEKISKVVFEVLKDNA"
     gene            3649..4176
                     /locus_tag="SF008_001074"
     CDS             3649..4176
                     /locus_tag="SF008_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEG8233351.1"
                     /translation="MRINYKKLFNLRKLLSDPKKLFSVLIFTLVVVFIQNYIAQNSSF
                     EGKVVRIIDGDTIEVNHENKLARIRFFGIDAPELKQSFGKQSKEALSRILSGKQVEII
                     YKNKDTYGRIVAIVKLNDVDINRFLVSKGYAWADTYYSNAYTKEQENAKKNHLGLWKE
                     SNPIEPYKWRKHNKF"
     gene            4185..4358
                     /locus_tag="SF008_001075"
     CDS             4185..4358
                     /locus_tag="SF008_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233352.1"
                     /translation="MKKYTLMVLLALGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     DCPKNWVDIKMTP"
     gene            complement(4359..4937)
                     /locus_tag="SF008_001076"
     CDS             complement(4359..4937)
                     /locus_tag="SF008_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233353.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLAGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEVKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGAKINNPEAVAAALMASVGGK"
     gene            complement(5010..5900)
                     /gene="cmoB"
                     /locus_tag="SF008_001077"
     CDS             complement(5010..5900)
                     /gene="cmoB"
                     /locus_tag="SF008_001077"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HEG8233354.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYAKIQELKALNLACNFSLDDSVNL
                     STNSQAKDEILAIAKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIKYELLGVEDLPSY
                     GLKFDVIFCLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRVYIRIKI"
     gene            complement(5983..7708)
                     /locus_tag="SF008_001078"
                     /pseudo
     CDS             complement(5983..7708)
                     /locus_tag="SF008_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344370.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            complement(7766..7906)
                     /locus_tag="SF008_001079"
                     /pseudo
     CDS             complement(7766..7906)
                     /locus_tag="SF008_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344369.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(8171..8495)
                     /locus_tag="SF008_001080"
                     /pseudo
     CDS             complement(8171..8495)
                     /locus_tag="SF008_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344367.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(8497..9027)
                     /locus_tag="SF008_001081"
     CDS             complement(8497..9027)
                     /locus_tag="SF008_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin"
                     /protein_id="HEG8233355.1"
                     /translation="MVGKYVTEYDSNNNHGRYFFTSTIEKPAYLYVYSPNDFFTSLAV
                     NGPSMTGATKSLVGTGAIKNRENYKETSDLITKDNISNEVLNSIFNDLKFNSSVDISD
                     LSKFYKNGKILTADELTSINQSMDFITALYGQTQDSNNATFANALKEVLGNSYGDLGK
                     ANQVIIKTKEILSQNS"
     gene            complement(9148..9487)
                     /locus_tag="SF008_001082"
                     /pseudo
     CDS             complement(9148..9487)
                     /locus_tag="SF008_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872973.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutination protein"
BASE COUNT         3014 a         1453 c         1483 g         3665 t
ORIGIN      
        1 atttaaaaaa agattatatc tttttttact taaaatttaa acaatactaa aagagagtgt
       61 gtgattaatt acatttttac acataggaaa atctttttag tttgtttcaa atgcattatt
      121 tataatttta agtataatta actttgcaat tattatatat ttttgcaaca gctttaagct
      181 tatttttaaa gaaaggaaat gtatgaaaaa aatacttcta agtgttttaa cgacctttgt
      241 tgcagtagta ttggctgctt gtggaggaaa ttctgactct aaaactttaa attctcttga
      301 taagatcaag caaaatggag ttgttaggat tggggtattt ggcgataaac caccttttgg
      361 ttatgtagat gaaaaaggaa acaatcaagg ctatgatata gctttagcta aacgcatagc
      421 aaaagaactt tttggcgatg aaaataaggt gcaatttgtt cttgttgaag ctgcaaatag
      481 ggttgagttt ttaaaatcaa ataaagtaga tattattttg gctaatttta ctcaaactcc
      541 gcaaagggca gaacaggttg atttttgctt gccttatatg aaggtagctt taggcgtagc
      601 tgtaccaaag gatagtaata taactagcgt agaagattta aaagataaaa ccttgctttt
      661 aaacaaaggt acaacagcag atgcttattt tacgcaaaat tatcctaata ttaaaacttt
      721 aaaatatgat caaaataccg aaacctttgc cgctttgatg gataaaagag gcgatgcttt
      781 aagtcatgat aataccttgc tttttgcttg ggtgaaagat catcctgatt ttaaaatggg
      841 tatcaaagag ttaggtaaca aagatgttat cgcaccagcg gttaaaaaag gcgataaaga
      901 acttaaagaa tttatcgata atttgatcat taaactaggc caagagcagt tttttcacaa
      961 ggcttatgat gaaactttaa aagctcattt tggagatgat gttaaggctg atgatgtagt
     1021 gattgaaggt ggaaaaattt aataaagggc tttttgccct ttatattgat ttaggataaa
     1081 atatgcaaaa aaaatacaaa aatattattt atgcttcttt gggtggaatt ttagaatttt
     1141 atgattttgt gctttttgcc ttttttttgg atatttttgc taaggtattc tttccgcaaa
     1201 atgatgcttt ttggatgcag ataaatgctt atatagcctt tggtgctgct tatttagcgc
     1261 gtccttttgg ttctattgtg atggcacatt ttgctgatag atatggaaga aagaatattt
     1321 tttatatttc tatgcttttg atggttttgc ctagttttgc tttagctttt ttgccaagtt
     1381 atgaaagtat aggtatattt gctactttga ttttatttac tatacgcatt ttgcaaggtt
     1441 tagccgttgg aactgaggtg agcggagctt ggatttatgt gagcgaattt gtcaaagggc
     1501 gtcaaattcc tttagctctt ggttttattt cagcgacttt aaccataggt ttattgctag
     1561 gaaatattgc cactttaggc ataagatctt attttacccc agaagaagtt caaagctatg
     1621 cttggagaat tccttttatc ataggaggat tttttggaat tttagctttg tttttaagaa
     1681 ataaactcag cgaaactcca gaatttataa aagttcaaaa tgaaaagaaa attttaagtt
     1741 ttccattgtt cgaagcttta aaaactcata aaatgagtat gcttgtttgt tttttaatga
     1801 ccatggtttt aacaagcggt gtggcaactt tgatgatttt acctaagtat tttgaaagtc
     1861 ttttagctat gagtaaaact tctgctttat gggtgcaaaa ttttgctatt ttagcggtga
     1921 tttttggagc tttatttcaa ggttttttag caagcaaatg gggaagctat aggatttgtt
     1981 ttatttttag tatagctttt attatttttg gtgtgctttt tagtttttat gatgagaatt
     2041 ttttatttta ttttttactg gcttgttttg cacaaggtat tattactttc gcgcctgttt
     2101 ttatgacgca aatttttaaa agtgaactga aatttagcgg gcttagtttt gcttataata
     2161 tttcttatgc gattttaggt tttttaaccc cttttatagt taatgctttt tataaagagt
     2221 atttgggtat ttatcttgct atagtgggat cttgttcctt gctttgcgtg tttttgttaa
     2281 aacgcgtttt tgtaagaagc aagattaaag aattaagcat tgtcttttaa aacttcaaaa
     2341 acaaccttag atattttttc aactgaagcg atttcacaat gctcatcagt tgaatgagga
     2401 ttatggatat ttgggcctat agaagcgcat aaaagctctt gttttttctc tataatgcca
     2461 cactcaagcc ctgcatggat agctgaaact ttggcattag gcgatacttt tttaagcgct
     2521 ttaaaaacca tgtcgctaag tgcgtttggt ttgccttccc aaggtggata gaaattaaaa
     2581 cttcttactt taaaatcaaa agccttgaaa aattctaaag tttcaaattc tacttgctta
     2641 agtccatcaa gtatattaga tcttgcaaaa agtgcgaatt tgatttggtt atcttgcatt
     2701 cttaaagtag ctaggttaat gcttgtttga actatatcta gattttcatc ataagctcta
     2761 actccatgag tgaaagaatt tataaggctt aaaagttttt tactttgatc gcaaatttca
     2821 aattcatttt cttctttaaa ttcgcatttt atccagtcgt tgctctttac ttcatcttta
     2881 aaatgcacta aagctttggc gtgtttaggt atagaattga ttctttctcc gccttcaaaa
     2941 gaaatgattt ctccttcatt ctcttgtatg aatttagcca tttctttgat ggaacttttt
     3001 tcattgcgta tgatatttat gcctgagtgt ccacctttaa aattttgcgc acaaagctca
     3061 taaattttac ccttttttct aagggtatta aaagacaaac ttgcttctat atctactcca
     3121 cctgcacagc ctatcatgat ctcatcatcg ctttcatgat ctaaatttaa aagcatttta
     3181 gattctaaag tgtgctcgag tgaattcact cccatgagtc ctacttcttc atcgtttgta
     3241 aaaagacatt ctaaattttc aaattcagcc atagcactca tcatgatggc tatacctatg
     3301 ccattatctg caccaagact tgaatttttg gctcttaaaa agccattttc ttcataaact
     3361 tctaagtttg gtgcatcgcc catacagacc atatcataat ggctttgtag acaaattttt
     3421 ggtttgcctt ttatggcatg gatatttcct gccttatcta cactcacctt aaagccttta
     3481 tctttgccgt aagagcttaa aaattctttc atttgttctg tttcataact gcaatgagga
     3541 attttgcata attgtttaaa attttctata acattttgca ttttatctcc tttgttttga
     3601 taaaattatg gcatattttt taaaatttaa aggcaaaatg attaaaaaat gagaataaat
     3661 tataaaaaat tatttaatct aagaaaatta ttaagtgatc caaaaaaact tttttctgta
     3721 ttaatcttca ctcttgtagt tgtttttatc cagaactata ttgcccaaaa ttctagtttt
     3781 gaaggaaaag tagttagaat tattgatgga gatactatag aagttaatca tgaaaacaaa
     3841 ctcgctagaa taagattttt tggtatagat gcaccagaac ttaaacaaag ttttggaaag
     3901 cagtcaaaag aagctttaag tagaatttta agtggcaaac aagttgaaat tatttataaa
     3961 aataaagata cttatggtag aattgttgct attgtaaagc ttaatgatgt tgatattaat
     4021 cgatttttgg taagcaaagg ctatgcttgg gctgatactt actatagtaa cgcttatacc
     4081 aaagaacaag aaaatgctaa gaaaaatcat ttaggtcttt ggaaagagag taatcctata
     4141 gagccttata aatggagaaa acacaataaa ttctaaggaa aaacatgaaa aaatatactt
     4201 taatggtgct attagcttta ggaatttctg gatgttttgt aaatgaaaga gggatttcaa
     4261 atcgttttta tgatgattgt aaagagtatt atgatggaag tggaacttat cataaggatt
     4321 gcccaaaaaa ttgggtagat attaaaatga ctccttgatt attttccacc cacagaggcc
     4381 attaatgcag ctgctacagc ttctggattg ttgattttgg caccttgttc ttgattttct
     4441 gtaggtttaa cagtgttaag tggcggacgc ttgagtttaa atatatgctc atcggtgcta
     4501 acaacttgta tcgttccttc aaacatttta acttctttaa catgtccaac cacttttaca
     4561 tctctttttt tggaggtttc gtcaaaaagt gcatgagctt caagttctaa aacatcgcct
     4621 aatttaagcg gagcataaaa aaaacatttt gatccaataa tcactgaaaa ttctttattg
     4681 atagaggctt gtgctacata gtttgccgca gcgaaaataa aggcatcaaa aatcaatcct
     4741 tgatcatctg ctaccatttc gcttgtggtt attaaaattg atttggcata gtttttatca
     4801 atttctataa tggttccagc aagagaggtg tttaattcag gacaagtgag taattctgct
     4861 ctaacgcgag atatatcttc tgcagatgcg tattcttcaa gttgtgcata ttcttcaaaa
     4921 ttatcttttt ttgccatatc taacctttaa attctactta tctacttcaa aatatctaat
     4981 tttcaatatc ggtaaaaaat aaaaagaatt tatattttaa tgcgtatata aactcttttg
     5041 ggtgcttcat agccttcaat ggtaagattt ttatcctttg gatctaagaa attttccagc
     5101 gaaaaagagt ctatccattc tgtttttctt tgttcgtttt catcggtttt ttttgtagct
     5161 aaaacttcaa attctttaaa tcctgctctt tcacaccagt tttttaatgc actaatgctt
     5221 ggtacaaaat aaatatttgg aattttagaa taagttttat taggcacaag agcgatttct
     5281 ctctcatctt ctatatacat ggtatctaaa aaaacaactc catttttatt aagtcctgct
     5341 tttaaatctt ttagcatttt tataggatca cttctatgat aaatcacccc aagacagaaa
     5401 atcacatcaa atttcaagcc atagcttgga agatcttcta cgcctaaaag ttcgtatttt
     5461 ataggagttt tagctaaagc gttaatgagt tcaaattgca aacggtattt gatagaagga
     5521 tcaaaaccta tgagttttgc aggattaaat tcaagcattt taaacatata ataaccatta
     5581 ttacagccta tatcagcaac gcatttttga gaaatttcgt tcatgaaagg ctttagaatg
     5641 ttgaatttaa taaaactttg ccattctgta tcgatgaaaa gatcgtctat tttaaaagga
     5701 ccttttctcc atggtttaag ttcttttgct atagctaaga tttcatcttt ggcttgagaa
     5761 tttgtagata aatttacact atcatctaaa gaaaaattac aagcaagatt gagagcttta
     5821 agttcttgaa ttttagcgta taaagggtga tttagaaatt gtttttcaag taaattttct
     5881 tgcattttta tccttgacat ttgcttttaa tgctaaatta taacattaaa agcttttatg
     5941 gcaatataaa ttatatgcat taaatatttg atcaaaaata actcaaaaat actttctaaa
     6001 gattacataa gctttagaac tataatcatc atctagttta tatttcttta aagctctagc
     6061 taaatcaagc ttgacataaa aattccctgt tttattataa agcagttgta aaccataagc
     6121 atccatatag tttgtttcac ttgctctata tagtttagaa tcattctcat accaagaata
     6181 acctatatca taaaaaggag tgatataaaa atcttttaaa ggagtagcca ttctaagtcc
     6241 aaagctagcc actacagcat tatctccttc tccatctcca ttattataag cccttactcc
     6301 ataaggatct cctaaagata tagtttcact actatctaat gtagctccat tgacaacttg
     6361 ttgataattt aaactaaaaa gatgagtaaa agtatcatta aagaaataag cattgttaag
     6421 attgacattg agtttagcaa attttccaaa gccatctcca tctgttttag aactcattcc
     6481 taatatagta gttcccccat ctttaacatt accatagctt acattagcac tataagaaaa
     6541 actatcatta ctaatgccat tataaactcc ttctatacca aagcttatcg tatcagagct
     6601 tttatctata gtcatgatat ttaatcttga attactaagc tttttatgat aataacttga
     6661 agttaaataa aaagaattat aagtcgtaat ccccaaagga tattttaaat ctatacctag
     6721 attttcagaa gttcctataa agtttgcatt tttataagct cctcctaaag catagtttct
     6781 tttagaataa cttggagtga tttttaaatt ccctaagaaa gtagtatagc ttataccata
     6841 gttagtttgt gcttcatcgc ttctttgcaa ataagcatta agactatctc cttgatgagc
     6901 tatgttatta aaactcatac tagcaccacc cctattatct gcctgattct tttataccgt
     6961 aattatcccc ataaaacaat acagaaacga agctatcact aggggtagtt tctatcacta
     7021 tatctgtgtc acctggatta tctcctgctt ttaaagaagc aagagtttgt atcccataca
     7081 tttcattgac tttataaacc gcatcttcta ctaatttagt agtgatgatt tcacctttat
     7141 gattaggtaa tttgctttct atagcataat ctcttacact agaattgttt tgaaccacat
     7201 atttacctaa aacacctaag gtgatattga tttgaatttg atcttttagt tcttgttgtg
     7261 ggatataagc tgtagcagca ggataaccac tagcttgaac ataataagaa ataatattgg
     7321 ctatatcttg taagtcttga actgaaatac tttctttttt gtaatcgttt aaggcttctt
     7381 gtaaaacttg ctcatctaaa cctagatctt taaagtttat gtttttattg gtaatatgaa
     7441 agttaaagct aactttatga attgattctt ctttagaagt attttttaaa gaaggagtgt
     7501 ttgaatttgg ggttttagtt tttaaagtat tatcattaga caagttaggt tgattttttt
     7561 gagtgttttt ctttgtgtta gtggtttttg aattattatt atcactagta ttagaatgat
     7621 ctatgataat cactccatct tttactttta aagtgttatt gtagtttttt aagttagcat
     7681 cttctttata aggagattgt tctaacattt gtatggtttt ttattatctt taatatcact
     7741 agcataaagg cttaagatag ctaaactaga tagtaagata atgcgtttca tttaaatttt
     7801 ccttagtgtt tgtttgattt ttaatcttta aactttgttt gttttattaa tttttaacaa
     7861 gatccaaaag gcttttaacc ttttggattt taatcatctt gagcaagggt ttcctgcttt
     7921 aaaattatcc gatactatac aacattacca ctttcttgag tgctggcttc atctatactt
     7981 gcttgtttat catcttcatt gatatttgga tcttcatctg tagtttgcat aagcaaagct
     8041 gtagtaatgt caggttcttg ttgtcctatg gtatcatttg ggttattatt agaaccgttg
     8101 ttgttaccat tgttaatatc acctgaatcg gttccatcgt ttccgttgtt ggagttgttg
     8161 gatcctgaat ttataatgga tactggctta tagtttgcac tatattttcc attgactgta
     8221 agatgactag ttccatttat gctcgcactt gctaaagttt tattagaatt ttctaaacta
     8281 gaattagtac tcgctgtagc gatttgaaga gctattgtag cttgttataa atcactagaa
     8341 actttatcta cagcttgttt taaacctgca ataactttat cgccattatt acctgttata
     8401 ccacttagag ctgtattgta agctttaact gcttcattat aagcatttac agcagtatcg
     8461 taagtttttt gagcgttttc ttgcccttcg gtcattttag gaattttgag aaagaatttc
     8521 ctttgtttta ataatgactt gattagcttt tcctagatca ccataagaat ttcccaatac
     8581 ttcctttaaa gcgtttgcaa atgttgcatt attactatct tgagtttgtc catataaagc
     8641 agtaataaaa tccatacttt gattaatgct tgttaattca tcagctgtta atatttttcc
     8701 atttttataa aatttactta agtcgctaat atcaacacta gaattaaatt tcaagtcatt
     8761 aaatatagaa tttaaaactt catttgagat gttatcttta gtaataagat cgctagtttc
     8821 tttatagttt tcacgatttt ttatcgctcc tgttccaact aaagattttg tagcacctgt
     8881 catagatggt ccatttactg ctaaagatgt aaaaaaatca ttagggctgt aaacatacaa
     8941 ataagccggt ttttctattg tgcttgtaaa aaaatatcta ccatgattat tattagaatc
     9001 atattccgta acatattttc ccaccatagc aatcccttct cgtactgtca tagtttctaa
     9061 atttataaca tttcctgcat tggatttaat tacaggtgat attgttttag gatctccttc
     9121 aaatgctgaa ggttttccat cttttacaaa ctccttcatc cccttatcct ctattgatga
     9181 agcagacaga ataatttttt ttgcattaat acttccacca ttgagtgttc catctataat
     9241 gagagctttt agaaccatag gcaatattta aataattttg gttagttttt ccttgtccaa
     9301 aatttacagt ttcaccactt gctatattaa aaccaccacc ccattggata acagagtttg
     9361 ttttacttcc tgagatattc atagtgccac cactaacact tatacttcca cttgttccat
     9421 gagtgaactt acccccactt ggtaaagcat agctttgtgt aaaaagaaag aacctacaac
     9481 taaagataaa gaaagtttat ttaacttttt catgacttgc tcctttttgt aagattaaga
     9541 tttaagaatc ttttgtttat atttataaaa atacaaataa atcattccta tctttaagat
     9601 aggaatgatt tattt
//
LOCUS       DARGEY010000052         9415 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.052, whole genome shotgun sequence.
ACCESSION   DARGEY010000052 DARGEY010000000
VERSION     DARGEY010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9415)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9415)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9415
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.052"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            46..1167
                     /locus_tag="SF008_001083"
     CDS             46..1167
                     /locus_tag="SF008_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
                     /protein_id="HEG8233356.1"
                     /translation="MLYCDHCVMPNTRPGIKFFKDEKGKNICSACINHKNKEKIDYKA
                     RFKELENLCDKYRRMNGKFEYDCAIAVSGGKDSHFQVHVMKEKLGMNPILFSVEDNFT
                     MTQAGKKNLKNLSETFGCHIISLKPDIKTQKKVMLKTFEKYGKPTWFIDRLIYSYPFA
                     MALKFNTPLLVYGENVSYEYGGGDDKETPSAKAIFENGVASDLDINEFIDDEIKEENL
                     QLFFNPSADDLNKLDPIYLSYFIKWNSYSNYIFAKSRGFSDLQNEWDRSHCAENFDQI
                     DTIGYILHAWMKYPKFGHAMASDYASRFVRYGMMSREEAVKIVKEKDHKLDNKCIEDF
                     CNFTGISKTTFWKIVEKHYNLELFYKNEFNEFKLKNPLK"
     gene            1178..1857
                     /locus_tag="SF008_001084"
                     /pseudo
     CDS             1178..1857
                     /locus_tag="SF008_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344715.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
     gene            1899..2903
                     /gene="legI"
                     /locus_tag="SF008_001085"
     CDS             1899..2903
                     /gene="legI"
                     /locus_tag="SF008_001085"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HEG8233357.1"
                     /translation="MKKALIIAEAGVNHNGDLNLAKKLIEVAAKSGADFVKFQSFKAE
                     LCVSKNAKKAAYQLKTTAKDESQLEMIKKLELDFNAHQLLISHAKQCGIAFLSTAFDL
                     ESIELLDDLGLEVFKIPSGEITNLPYLKKIAKLNKKIILSTGMSNLGEIEAALEVLCK
                     EGTQRANITLLHCTTEYPAPFNEVNLKAMQTLKNAFNLDVGYSDHTKGIHISLAAIAL
                     GASVIEKHFTLDKNMSGPDHKASLEPDELQELCTKIREIESALGDGIKQASKSERKNI
                     EIARKSLVAKKKIKKGEIFSEENLTTKRPASGISAMRYDEYLGKKASKDYEEDELIHE
                     "
     gene            2896..4071
                     /gene="legG"
                     /locus_tag="SF008_001086"
     CDS             2896..4071
                     /gene="legG"
                     /locus_tag="SF008_001086"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HEG8233358.1"
                     /translation="MSKRKICIVSATRAEWYLLRNLCLEIQNDKDLELQIIATGAHLS
                     PEFGLTYKEIEKEFKIAKKIPILLASDDKISLCKAMALANIGFSEAFESLKPDIVVIL
                     GDRYEMLSVASVCLMMNLPIAHLCGGELTLGAIDDSIRHSISKMAHLHFVSTQTYKNR
                     LLQLGEEKNRVFNVGSLASTIMKNINFLDKNELAKVLEFDLGQNIYLITYHPVTLNLK
                     NSKKEIDILLKTLDELNNASLIFTKANADENGLLINEILKDYCEKNPKKAKLFDNLGS
                     QKYLSIMKIAKAMIGNSSSGISESPFFKTPCINIGSRQKGRLRTQNIIDCEFENLDQA
                     FEKLESKDFKQALHHFKNPYENDKNPNIIIKTCLKNANLDTILQKNFIDLRQNLGYK"
     gene            4058..5089
                     /locus_tag="SF008_001087"
     CDS             4058..5089
                     /locus_tag="SF008_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEG8233359.1"
                     /translation="MDINKLKLTPDSSIEEALKVVGKERVRLGIIVDKKDKFLGVISD
                     SNIRKALIKGKNLQSKIKDIYTKNPITIKENTSKNELLKLSAKTDIYDFPVLNDKKEI
                     ISIKSISSLLNRQVNSNFVIIMAGGLGTRLKELTKDTPKPMLKVGKKPILESIVQKLK
                     EQNFENFIFCVNYKKQIIEDYFKKGKNFGVKISYIKERKKLGTAGALSLIKQDFKESF
                     IVMNADILTELNFNELLKAHKDSKALMSVCVREFEQQIPFGVIEQNKGFITNITEKPV
                     QKFLVSAGIYVCEPEMLELLNKNEYLDMPELIKLAMQKGRVNTYLIHDYWIDIGRLDE
                     FVKANEDFK"
     gene            5086..5991
                     /locus_tag="SF008_001088"
     CDS             5086..5991
                     /locus_tag="SF008_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEG8233360.1"
                     /translation="MKVLIIGFGSIGKKHFLALNELRFLVDVLSKSYEFSHFEGKNFR
                     LFKDLEELNLQDYDLFIIANITTSHFKTLEFLDQNVKEKIILVEKPLFQKDMEFIPSN
                     NNQIYIAYLLRFHPMIQDLKQLIDEKEVYFAKFICNSYLPNWRKLDYRQNYSAKKELG
                     GGVMLDLSHEIDLAFYFFKELSLKFSQNLKISELEITSDDFTFLALSAKNTSIHIELD
                     YFSKLTQRKILFHTKENSFEADLVHNKLNIYDKTNNFKSKTYENDTFKTLQNMYKAIL
                     EKDQNLCTLGEARRVLRLCDKARNE"
     gene            5984..6691
                     /gene="legF"
                     /locus_tag="SF008_001089"
                     /gene_synonym="ptmB"
     CDS             5984..6691
                     /gene="legF"
                     /locus_tag="SF008_001089"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HEG8233361.1"
                     /translation="MSEILCTICARGGSKGVKNKNIRKINDLEMIAYSIIQAKNSKLF
                     KHIVISTDSEEIAKIALKYGGEVFFKREAHLASDTAAKIPVMRDALLRSEEYFKCQFD
                     TLIDLDASAPLRSSADIIKAFETFCQNQNDNLITAVPARRNPYFNLIEVQDGKVVKSK
                     SGNFTTRQSVPKCYDMNASIYIFKRDFLLQNDSVFGKNTGLFIMDESTAFDVDSELDF
                     KIVEFLIKEKNLQAKDF"
     gene            6691..7461
                     /locus_tag="SF008_001090"
     CDS             6691..7461
                     /locus_tag="SF008_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEG8233362.1"
                     /translation="MLENKIIFVAGACGRIGKALCKKILQNKGIAILADINENHLSIL
                     KTELENEFKKELLSLRLDITSKESLNCAIDQAFEKYSKIDSFVNSSYPVGKDWGKIAY
                     YEASYEQICESLNLHLGGFILASQEFVKFFKKQSYGNIINLSSIMGVFAPKFENYENT
                     TMQSSLEYSVIKAGINHLGAWLAKELFNTNIRVNTLASGGILDNQANIFLEKYRKCCA
                     SKGMLDAEDICGTLVFLLSDESKFVTGQTLVVDDGWGL"
     gene            7461..9320
                     /locus_tag="SF008_001091"
     CDS             7461..9320
                     /locus_tag="SF008_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8233363.1"
                     /translation="MNNELFLKNTQALFEVDQPLAYALRILKNIENYNIDKNSDGLNI
                     INKQMQKIYENPNQELLDQLVYFQTHYKKYPVLFFYGFGNGMLYKTLCENKNHKHIIV
                     FENTLELIALAFSLFDFSQEIKSEKLILFYTPNITTAQLTTLFTHPNIYNCLKIYKLH
                     IHSNFYQQLYNQEIKNLNTKLSETIKFIALNYGNDPKDSLIGIKHTLENLPKVLNHGI
                     FQDFLKERRGKVKNAIIVSTGPSLTKQLPLLKKYGHKMTIFCADSSYAILAKAGIKPD
                     YVLSLERVHYTSELFNNDFKDFDKDILFIISSLTHKNTLHYLEKNNRTYMLVHRPLES
                     AGILKLDNFGYIGVGYSVANMAYELASALRHENIILIGQDLAYAEDGSSHPKDYLYLE
                     QADNTDNTTTLAYGKNGLVKTTLTWNLFRQTFEKDIFWTKEKLNINTYNCTEGGAYIE
                     GSIEKPFLWACENLLDESLNKPFSFPKSLSKKEANDKIDKIKKILQSAILQANKLIKS
                     TQKELNKLKFELNRDEINLQTLEKIRKKLLISFKEYKKLKLFNELSRALYFHNECEIV
                     KYEAMDDENQKKYLSHFLKLQYNWFAQGLGYLDTQNKIIQEALQNWHFDDIKE"
BASE COUNT         3665 a         1301 c         1552 g         2897 t
ORIGIN      
        1 aacatttttt aaaaaaaata ataaataatt aagggggaaa ccaaattgct ttactgtgat
       61 cattgtgtca tgccaaatac aaggcctggt ataaaatttt tcaaagatga aaaaggtaaa
      121 aacatctgtt ctgcttgtat caatcataaa aacaaagaaa aaattgacta taaagcaaga
      181 tttaaagagc ttgaaaatct atgtgataaa taccgcagaa tgaatggtaa attcgaatac
      241 gattgtgcta tagctgtaag cggaggcaag gattcacatt ttcaagtgca tgtcatgaaa
      301 gaaaaacttg gaatgaatcc tattcttttt agcgttgaag ataattttac catgacacaa
      361 gcaggcaaga aaaatcttaa aaatttaagc gaaacttttg gttgtcatat cattagctta
      421 aaacctgata tcaaaactca aaaaaaagtt atgctaaaaa cctttgaaaa atatggaaaa
      481 cctacttggt ttattgatag actgatttac agctatcctt ttgctatggc tttaaaattt
      541 aatacacctt tattggttta tggggaaaat gtaagttatg agtatggggg gggggacgac
      601 aaagaaacgc ctagtgcaaa agcgatcttt gaaaatgggg ttgcaagcga tttagatata
      661 aatgaattta ttgatgatga aataaaagag gaaaatcttc aacttttctt taatccaagc
      721 gctgatgatc ttaataaact tgatccgatt tatcttagtt attttataaa atggaattct
      781 tactcaaatt atatctttgc taaaagtcgt ggatttagtg atttgcaaaa tgagtgggat
      841 agaagtcatt gtgctgaaaa ttttgaccaa attgatacca taggatacat actgcacgct
      901 tggatgaaat atccaaaatt tggtcatgca atggcaagtg attacgcatc tcgttttgtg
      961 cgttatggaa tgatgagtag agaagaagct gtaaaaatcg tgaaagaaaa agatcataaa
     1021 ctagacaata aatgtattga agatttttgt aattttacag gcattagcaa gactactttt
     1081 tggaaaattg ttgaaaagca ttacaatctt gaactttttt acaaaaatga attcaatgaa
     1141 tttaaactta aaaatccatt aaaataaagg aaataaaatg caaaattcac ttcaaaccta
     1201 tactcaaaaa tatgatgaaa acaattatgg acttttatat cctgattctc atgtaatacg
     1261 attttatgaa agaattttaa aatacaaact tggcattaca agcggaaatt tacttgattt
     1321 tggttgtggc aatggggttc attctaagta ttttttagat aagggcttta aaccttttgg
     1381 catagatatt gtgccaagtt tgcaaaaaaa ttgggatgca aaaatcaaaa tttcaggggg
     1441 ggggattgta aaatcataga gccaaattct agtatcaaag ggctttttga tgaaaaaatg
     1501 gatattgtct ttgcaaatca aagcctttat tatatcccta aaacagaact taaacaaaat
     1561 atcttagaat tttatgaatg cttaaatcaa ggtggaatac tttttgctac aatgatgagt
     1621 gagaaaaatt actatttctc tcatagcgaa aaagaaaatg aaaatggatt gcgtaaggtt
     1681 agtatacagg gtcgcttaaa cgaaacaacc tacattcatt ttgctaaaag tattgatgag
     1741 ttgcaagaac tttttaagcc ttttgaagcc ttatttttgg gtgattatga tcctattaat
     1801 ttttataatt ttgaaggctc ggctcatcat tttatttaca ttggtataaa aagataaaaa
     1861 ttttttgcct ttattgaagg caaaataaag gtaaaaaaat gaaaaaagct ttaatcatag
     1921 cagaagcagg ggttaatcac aatggtgatt taaatttggc caaaaagctg atcgaagttg
     1981 ctgccaaaag tggagctgat tttgttaaat ttcaaagttt caaagccgaa ctttgcgtga
     2041 gtaaaaatgc taaaaaagca gcttatcagc taaaaaccac agctaaagat gaaagtcaat
     2101 tagaaatgat taaaaaacta gagcttgact ttaatgcaca ccagctttta atctctcatg
     2161 ctaaacaatg tggtatcgct tttctttcaa cggcttttga tttagaaagt attgaacttt
     2221 tagatgattt aggacttgaa gtttttaaaa ttccaagcgg agaaatcaca aatttgccct
     2281 atctaaaaaa aattgcaaaa ttaaataaaa aaatcatact ctccacagga atgtcaaatt
     2341 tgggcgagat agaagcggct ttagaagtac tttgcaaaga aggcacccaa agagcaaata
     2401 tcaccctact tcactgcact accgaatacc ccgcaccctt taatgaggtt aatttaaaag
     2461 ctatgcaaac cttaaaaaat gcttttaatc ttgatgtagg ctattcagat cacaccaaag
     2521 gtatacatat ttctttggcc gctatcgcct taggggcaag cgtgatagaa aagcatttta
     2581 ccttagataa aaatatgtca ggacctgatc ataaagcctc tttagaacct gatgagcttc
     2641 aagaactttg cacaaaaatt agagaaatcg aaagtgcttt aggtgatggc ataaaacaag
     2701 caagcaaaag cgaaagaaaa aatatcgaaa ttgcaagaaa aagcctagta gctaaaaaga
     2761 aaatcaaaaa aggagaaatt tttagcgaag aaaaccttac cacaaaacgc cctgctagtg
     2821 gtataagtgc gatgcgttat gatgagtatt tgggcaaaaa agccagtaaa gattatgaag
     2881 aagatgagct aatccatgag taaaagaaaa atttgcatag tcagcgcaac aagggctgag
     2941 tggtatcttt taagaaattt atgccttgaa atacaaaatg ataaggactt agagctccaa
     3001 attatcgcta caggagcgca cttaagcccc gaatttggac taacttataa agaaatagaa
     3061 aaagaattta aaatcgctaa aaaaattcct attttactcg caagcgatga taaaataagc
     3121 ctttgcaaag ctatggcttt agcaaatatt ggctttagcg aagcatttga aagcttaaaa
     3181 cctgatatcg tagtaatttt aggcgatcgt tatgaaatgt taagcgtggc tagtgtatgc
     3241 ttgatgatga atcttcccat agcccatctt tgcggcggag agcttacctt aggagccatt
     3301 gatgatagca taagacatag catttctaaa atggcacatt tgcattttgt aagcactcaa
     3361 acttataaaa atcgtctttt gcaacttgga gaagaaaaaa atcgtgtatt taatgtcgga
     3421 tctttggcaa gtactattat gaaaaatatc aattttttgg ataaaaatga gcttgcaaaa
     3481 gtcttagaat ttgacttagg acaaaatatt tatttaatta cctatcatcc tgtaacttta
     3541 aatttaaaaa attctaaaaa ggaaatcgat attttattaa aaactttaga cgagcttaat
     3601 aatgcaagtt tgatttttac caaagcaaat gcagatgaaa atgggctttt gatcaatgaa
     3661 attttaaaag actactgcga aaaaaatcct aaaaaagcta aactttttga caatcttggc
     3721 tcacaaaaat atcttagcat tatgaaaata gctaaagcca tgataggaaa tagctcaagc
     3781 ggtataagcg aaagtccttt ctttaaaacc ccttgtatca atataggatc aagacaaaaa
     3841 gggcgtttaa gaactcaaaa tatcattgat tgtgaatttg aaaatttaga tcaagctttt
     3901 gaaaagctag aaagcaaaga ttttaaacaa gctttacatc attttaaaaa cccttacgaa
     3961 aatgacaaaa atccaaatat aatcataaaa acttgcctaa aaaacgcgaa tttggataca
     4021 attttacaaa aaaatttcat tgatttaagg caaaaccttg gatataaata aactcaaact
     4081 cacacctgat tctagcattg aagaagcctt aaaagtagta ggaaaagaac gcgttcgcct
     4141 tggaatcatt gtcgataaaa aggataaatt cttaggtgtc atcagtgatt caaatatcag
     4201 aaaagctttg ataaagggta aaaatttaca aagcaaaatc aaagatatct atactaaaaa
     4261 tcctattacc atcaaagaaa atacaagcaa gaatgaactt ttaaaactaa gtgcaaagac
     4321 tgatatttat gattttcctg tgctaaatga caaaaaagaa atcatttcta taaaatccat
     4381 ttcttccttg ttaaaccgcc aagtaaattc aaattttgtc atcataatgg caggtggact
     4441 tggaacccgt ttaaaagaat tgaccaaaga tactccaaaa cctatgctaa aggttggaaa
     4501 aaagcctatt ttagaaagta tagtgcaaaa attaaaagag caaaattttg aaaattttat
     4561 cttttgtgta aattataaaa aacaaattat cgaggattat tttaaaaaag gtaaaaattt
     4621 tggtgtaaaa atttcttata tcaaagagcg caaaaaacta ggtacagcag gggctttaag
     4681 tcttatcaag caagatttta aagaaagctt tatcgtaatg aatgcagata ttttaaccga
     4741 gctcaatttt aacgagcttt taaaagcaca taaagattct aaagctttaa tgagtgtgtg
     4801 tgtaagagaa tttgagcagc aaattccttt tggggtgata gaacaaaata aaggctttat
     4861 cacaaatatc acagaaaagc cggtgcaaaa atttttagta agtgcaggaa tttatgtatg
     4921 cgagcctgaa atgttagaac ttttaaataa aaacgaatac cttgatatgc cagagcttat
     4981 taaactagcg atgcaaaaag gtagagtaaa tacttattta atccatgatt attggatcga
     5041 tataggaaga cttgatgagt ttgtcaaggc aaatgaggat tttaaatgaa agttttaatc
     5101 ataggctttg ggagcatagg aaaaaaacat tttttagcct taaatgaact gagattttta
     5161 gtagatgtgc tttcaaaaag ctatgaattt tcgcattttg aaggtaaaaa ctttagactt
     5221 tttaaggatt tagaagaatt aaatttacaa gattatgact tatttatcat cgcaaatatc
     5281 actacaagtc attttaaaac tcttgaattt ttagatcaaa atgtaaaaga aaaaatcata
     5341 cttgtggaaa aacctttatt tcaaaaggat atggagttta ttcctagcaa caataatcaa
     5401 atttatattg cttatctttt aagatttcat cctatgattc aagatttaaa acaactcatc
     5461 gatgaaaaag aagtttattt tgctaaattt atttgcaatt cttatttgcc taattggcga
     5521 aaacttgatt ataggcaaaa ttatagcgcc aaaaaagagc taggtggtgg ggtaatgctt
     5581 gatttatccc atgagattga tttggctttt tattttttta aagaactttc tttaaaattt
     5641 tctcaaaatt taaaaatttc agagcttgaa ataacaagtg atgattttac ttttttggca
     5701 ttgagtgcga aaaatacttc aattcatatc gagcttgatt atttttcaaa attaactcaa
     5761 agaaaaattc tttttcacac caaagaaaat agctttgaag ccgatttagt tcataataaa
     5821 ttaaatattt atgacaaaac taacaatttt aaaagtaaaa cttatgaaaa tgatactttt
     5881 aaaaccttac aaaatatgta taaagcgatc ctagaaaaag atcaaaattt atgtacttta
     5941 ggagaagcaa ggagggtttt aagattgtgt gataaggcaa gaaatgagtg aaattttatg
     6001 cacaatttgt gcaagaggtg gaagcaaagg tgttaaaaat aaaaatatac gcaagattaa
     6061 cgatcttgag atgatagctt atagcattat ccaagctaaa aattcaaaac tttttaaaca
     6121 tatcgttata agcacagata gtgaggaaat agccaaaata gcgctaaaat atggcggcga
     6181 agtttttttc aaaagagaag ctcatctagc aagcgataca gctgctaaaa ttcctgtaat
     6241 gcgtgatgct ttgttaagaa gtgaagagta ttttaaatgc caatttgaca ccttaatcga
     6301 tcttgacgct tcagcgccgc ttagatctag tgctgatatc ataaaagctt ttgaaacatt
     6361 ttgtcaaaat caaaatgata atctaatcac cgctgttcct gctagacgca atccttattt
     6421 taatctaatc gaagtgcaag atggaaaagt tgtaaaatcc aaatcaggaa attttaccac
     6481 acgccaaagc gtacctaaat gttatgatat gaatgcaagt atttatatat ttaaaagaga
     6541 ttttttactg caaaatgata gcgtttttgg taaaaataca gggcttttta tcatggatga
     6601 aagcactgct tttgatgtag atagcgagct tgattttaaa atagtagaat ttttgatcaa
     6661 agaaaaaaac ttacaagcaa aggattttta atgctagaaa ataaaattat atttgtagca
     6721 ggagcttgtg gacgcatagg caaggcgctt tgtaaaaaga tattgcaaaa caaaggcata
     6781 gccattttag ccgatatcaa tgaaaatcat ttatctatat taaaaacaga actcgaaaat
     6841 gagtttaaaa aagagctttt aagtcttagg cttgatatta cttctaaaga aagcttaaat
     6901 tgtgccatcg atcaagcttt tgaaaaatac tctaaaatcg atagctttgt aaattctagc
     6961 tatcctgtag gaaaagattg gggcaagata gcttattatg aggcttcata tgagcaaatt
     7021 tgcgaaagtt taaatttgca tttgggtgga tttatcttag cttcgcaaga atttgtgaaa
     7081 ttttttaaaa aacaaagtta tggcaatatc atcaatctta gctctattat gggggttttt
     7141 gcgcctaaat ttgaaaatta tgaaaatacc accatgcaaa gttctttgga atacagcgtg
     7201 atcaaagcag gaattaatca tcttggtgct tggctcgcaa aagagctttt taatacaaac
     7261 attcgtgtaa ataccttagc aagtggtgga attttagata atcaagctaa tattttttta
     7321 gaaaaatacc gcaaatgctg cgcaagtaag ggcatgttag atgcagaaga tatttgcgga
     7381 accttggtat ttttactcag tgatgagagc aaatttgtca caggacaaac cttagttgta
     7441 gatgacggat gggggctcta atgaataatg aacttttttt aaaaaatacc caagcgcttt
     7501 ttgaagtaga ccaaccttta gcatatgcgt taagaatttt aaaaaatatc gaaaattata
     7561 atatagataa aaatagtgat ggtttaaata taatcaataa gcaaatgcaa aaaatatatg
     7621 aaaatcccaa tcaagaactt ttagatcaac ttgtctattt tcaaactcac tataaaaaat
     7681 atcctgtttt atttttttat ggttttggaa atggtatgct ttataaaacc ttgtgtgaga
     7741 ataaaaatca taaacatatc attgtctttg aaaacacctt agagttaata gctttagctt
     7801 ttagtttgtt tgattttagt caggaaataa aaagtgaaaa attaatccta ttttatacac
     7861 caaatattac aacagcacaa cttactacac tttttactca tccaaatatt tataattgtc
     7921 tcaaaattta taaattgcac atacattcta atttttatca acaattatac aaccaagaga
     7981 taaaaaattt aaacacaaaa ctaagtgaaa ctattaaatt tatagcttta aattatggaa
     8041 atgatcctaa agattcttta ataggcataa aacacacctt agaaaatctt ccaaaagttt
     8101 taaaccatgg gatttttcaa gattttctca aagaaagaag gggtaaagtt aaaaatgcta
     8161 tcatagtttc gacaggccca agcctaacca aacagcttcc tttattaaaa aaatatggtc
     8221 ataaaatgac catattttgt gcagattctt cttatgcgat acttgccaaa gcgggtatca
     8281 aaccagacta tgttttatcc ttagaaagag tgcattatac cagtgaatta tttaataatg
     8341 attttaaaga ttttgataaa gatattttat ttattataag ctctttaact cacaaaaata
     8401 ctcttcacta tcttgaaaaa aacaatagaa catatatgct tgtacaccgt cctctagaat
     8461 ctgcaggaat actaaagctt gataattttg gatatatagg agttggatat agtgtagcca
     8521 atatggctta tgaactagca agtgctttaa gacatgaaaa tatcattctt ataggtcaag
     8581 atttagctta tgctgaagat ggaagctctc atccaaaaga ttatctttac ctagagcaag
     8641 cagataatac agacaatact actactttag catatggaaa aaatggacta gtaaaaacaa
     8701 cattgacatg gaatttattc agacaaactt ttgaaaaaga catattttgg acgaaagaaa
     8761 aattaaatat caacacctat aattgcaccg aaggtggagc atatatagaa ggcagcatag
     8821 aaaaaccttt tctttgggct tgtgaaaatt tattagatga aagcctcaac aaaccttttt
     8881 cttttccaaa aagtttatca aaaaaagagg cgaatgataa gatcgataaa ataaaaaaaa
     8941 tactacaaag tgctattttg caagcaaata aattgatcaa aagcactcaa aaagaactta
     9001 ataaacttaa atttgagtta aatagagatg aaattaatct tcaaacctta gaaaaaattc
     9061 gaaaaaaatt acttatctct tttaaagaat ataaaaaact taaattgttt aatgagctca
     9121 gtagagcttt atattttcac aatgaatgtg aaattgtaaa atatgaagct atggatgatg
     9181 aaaaccaaaa aaaatatcta tctcactttt taaaacttca gtataattgg tttgcacaag
     9241 gacttggata tctagatact caaaacaaaa tcatacaaga agctttacaa aattggcatt
     9301 ttgacgatat aaaagaatga aagaatacac aggaaaagaa atgaatttta cctcaaatca
     9361 acaagaaata tttaagcaaa atatcaatgc tctagttaac gaaatactta gaaaa
//
LOCUS       DARGEY010000053         9187 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.053, whole genome shotgun sequence.
ACCESSION   DARGEY010000053 DARGEY010000000
VERSION     DARGEY010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9187)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9187)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9187
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.053"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            66..143
                     /locus_tag="SF008_001092"
                     /pseudo
     CDS             66..143
                     /locus_tag="SF008_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009881991.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            279..578
                     /locus_tag="SF008_001093"
     CDS             279..578
                     /locus_tag="SF008_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8233364.1"
                     /translation="MALGLILCALVNVLLGFSNSFYAYVGFVIALGVFQGMGVGPSFI
                     TLANWYPKKERGIYTAVWNISHNIGGGIVAPIVSLSGFALAAFLGVSLADFNETH"
     gene            615..797
                     /locus_tag="SF008_001094"
                     /pseudo
     CDS             615..797
                     /locus_tag="SF008_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778094.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            1502..2254
                     /gene="peb3"
                     /locus_tag="SF008_001095"
     CDS             1502..2254
                     /gene="peb3"
                     /locus_tag="SF008_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HEG8233365.1"
                     /translation="MKKIITLFGACALAFSMANADVNLYGPGGPHTALKDIANKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVV
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            2351..3445
                     /locus_tag="SF008_001096"
     CDS             2351..3445
                     /locus_tag="SF008_001096"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HEG8233366.1"
                     /translation="MKTFLVCALEPSANLHLKEVLKAYKKDFGEFELHGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKKAIKELVNLTLSQTMDAVLCIDSPAFNI
                     PFAKALKKAGNKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFNKSTYI
                     GHPLLDEIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIRRLMPIFKELSQKFKGE
                     KILCVPSFNLEKLEVYGDISEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFVL
                     AYKAKAIDIFIAKLFVKLKHIGLANIFCDFAGKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILNEI"
     gene            3457..3942
                     /gene="greA"
                     /locus_tag="SF008_001097"
     CDS             3457..3942
                     /gene="greA"
                     /locus_tag="SF008_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEG8233367.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGNLDKGYISIASPIARAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            4075..4710
                     /locus_tag="SF008_001098"
     CDS             4075..4710
                     /locus_tag="SF008_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HEG8233368.1"
                     /translation="MGDIFDLLIGEISATHEFAKPYIELLEELALKIEIIYLEGNHDF
                     NLSCFFKKVKIFNLQKQPIKLNLHTSKGNNLVLNSAFIKLAHGDIFLPPLLQFTLKTL
                     RNHYLLVFLNFLNIITRNFISNKILQNQNKKNLFYQIKDFENLAKKRYEKYENLGFWV
                     CEGHYHQNHQINKENIKYLNLASFAYERSFFVVEYQQEIKFREQKLRGQNV"
     gene            4703..5659
                     /locus_tag="SF008_001099"
     CDS             4703..5659
                     /locus_tag="SF008_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HEG8233369.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQVYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIIFNSSLSN
                     EFMNEKGVQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            5663..7972
                     /locus_tag="SF008_001100"
     CDS             5663..7972
                     /locus_tag="SF008_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEG8233370.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVVATDSNEKSTPQAEPEAPKQEIATPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNVAPKPTNNTANKPTESGE
                     KKVPASGSNASSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNESNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            7977..8498
                     /locus_tag="SF008_001101"
     CDS             7977..8498
                     /locus_tag="SF008_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-binding chemotaxis protein CheW"
                     /protein_id="HEG8233371.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            8498..9121
                     /gene="serB"
                     /locus_tag="SF008_001102"
     CDS             8498..9121
                     /gene="serB"
                     /locus_tag="SF008_001102"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEG8233372.1"
                     /translation="MIKLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMTGEL
                     DFFESLQKRVSFLKGMSYKKVLELSSTLPLMRGAHELIQYLKSKNIQIVIFSGGFHEG
                     INPAMQKLGINLGFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKSFLNLKTDEVM
                     CVGDGANDLAMFNESGLKIAFCAKEILRSQADICIDIKDLKEIIKVI"
BASE COUNT         3273 a         1270 c         1748 g         2896 t
ORIGIN      
        1 ttttcaaacc taaggcaaaa gctattaaat ttcctcttta ggaaatttta cctagatatt
       61 acaaaatgag aacttggagt ttaagtgggg tttttatagg atatatggga tattatcttg
      121 tgcgaaataa tatcactctt tcaactccat ttatacaaaa tcaacttaat ctcagtaaat
      181 cagacatcgg aacaatcaca ggctcaatgc ttatagctta cgggattagc aagggtgcaa
      241 tgagcgttat aagcgacaaa gctggtccta aaaaatacat ggctttaggt cttattttat
      301 gtgctcttgt aaatgtttta cttggttttt caaattcttt ttacgcttat gtaggttttg
      361 ttatcgcgct tggggttttt caaggtatgg gggtaggtcc ttcttttatc actcttgcaa
      421 actggtatcc taaaaaagag aggggaattt acacggccgt ttggaatatc tcacataata
      481 taggaggcgg gatagttgct cctatagtgt cgctttctgg atttgcttta gcagcatttt
      541 taggcgtaag cttagcagat tttaatgaaa cacattagca tatcaatcat ttttatgttc
      601 ctgctttttg tgctgtgctt attagccttt atatgcttta tgcagtcaaa ggaagtccta
      661 aaaatgaagg tttggttgat attagcgaaa tcaacgaaat gagaggtatt aaaaccgaag
      721 aaattaaagc tgtagaaagt ccaaatttaa gcggtcttga aattttttat cattatgtcc
      781 ttaaaaataa aaatgcttgg tatgtagctt ggatggatac ttttgtttat atggtgcgtt
      841 ttgggcttat ttcttggctt cctatttact tgctagaaac aaaaggcttt aataaagaac
      901 aaataggtat tgccttttgg ctttttgaat gggctgctat accttctact ttacttgcag
      961 gatatatttc agataaaatt tttaaaggct atagaatgcc tcctgctata ggcgccatgg
     1021 tgattatttt ctttatgatt attggatatt ttacttcaaa taatctttat atggttattt
     1081 tctttgcagc tatggcgggg tgtttagtct atataccaca atttttagca agtgtgcaaa
     1141 ctatggaagt cgttcctgct tttgcagtag gatcttgtgt aggatttcgt ggctttatga
     1201 gttatgtagt cggcgcttca cttggaacaa aagctatagg ttgggctgtg gattactatg
     1261 gtagttggaa tgctggtctt atcatgctcc ttagtgcttg tattctttgt atactttgtt
     1321 ctactttatg tcattttagc gctaaaaaga agcatcaata acaattttaa cttttgcttg
     1381 caaaaatacc aagcaaaagt tagatttaat aatatttttg ttacattata actatttatt
     1441 aacatacaat ttctaaaatc ttaccttcaa tcaataaaaa tttatcataa aaggaaatac
     1501 tatgaaaaaa attattactt tatttggtgc atgtgcctta gcttttagta tggcaaatgc
     1561 agatgtaaac ctttacggac caggtggccc acacacggcc ttaaaagata tagcaaacaa
     1621 atatagcgaa aaaacaggcg ttaaagtaaa tgtaaatttt ggccctcaag cgacttggtt
     1681 tgaaaaggct aaaaaagatg cagatatttt atttggcgct tcagatcaat cggctttagc
     1741 tatagcgagt gattttggaa aagattttaa tgtgagtaaa atcaagcctt tatattttag
     1801 agaagccatc atacttactc aaaaaggcaa tcctttaaaa atcaaaggtt taaaagattt
     1861 ggctaataaa aaagtaagaa tcgttgtgcc tgaaggtgct ggaaagagca atacttctgg
     1921 aactggagtt tgggaagata tgataggtag aactcaagat ataaaaacca tacaaaattt
     1981 tagaaacaat atcgtggcct ttgttccaaa tagtggaagt gcaagaaagc ttttcgcaca
     2041 agatcaagcc gatgcttgga tcacttggat tgactggtca aaaagcaatc ctgacatagg
     2101 aactgccgta gctatagaaa aagatttggt tgtttataga acttttaatg tggtagctaa
     2161 agaaggtgcg agcaaagaaa cacaagattt tattgcttat ttaagttcta aggaagctaa
     2221 agaaattttt aaaaaatacg gctggagaga ataaaccttc atacacgctt tttagcgtgt
     2281 attcttgcat aacttctttt aattaagcca aaataagata aaatgtttaa aatattgata
     2341 aggaaatttt ttgaaaacct ttttagtttg tgctttagag ccttcagcaa atttgcattt
     2401 aaaagaagtt ttaaaagctt ataaaaaaga ttttggtgaa tttgaacttc atgggattta
     2461 tgatgagagt ttatgcaaag aatttgattt aaattctaaa ccactttata gctcacatga
     2521 atttagtgct atgggtttta tagaagtttt acctttgatt ttcaaagcaa aaaaagcgat
     2581 caaagaatta gtgaatctaa ctttaagcca aacaatggac gcagttttat gtatcgattc
     2641 tcccgctttt aatatccctt ttgccaaggc tttaaaaaaa gcaggcaata aaattccacg
     2701 catttattat atcttgcctc aagtttgggc gtggaaaaaa ggtcgcatac ctatcataga
     2761 aagtcatttt gatattttag cttctatttt gccctttgat aatcaatttt ttaacaaaag
     2821 cacctatata ggccatccgc ttttagatga gataaaagaa tttaaaaatc aagaagacat
     2881 taatcataca ttttcaaaaa aagatgatga aaaaactata gcctttttac caggttcaag
     2941 gcgtagtgaa attaggcgtt taatgcctat ttttaaagaa ctttctcaaa aatttaaggg
     3001 tgaaaaaatt ctttgcgttc cctcatttaa tcttgaaaaa ttagaagttt atggtgatat
     3061 tagcgaattt aagatagaaa gtaacactcc aaaagtgctt aaaaaagctg attttgcctt
     3121 tatttgtagt ggaacagcta ctttagaagc agctttagtg ggaactcctt ttgttcttgc
     3181 ttacaaggca aaggctatcg atatttttat cgcaaaactt tttgtaaaat taaaacatat
     3241 aggacttgca aatatttttt gtgatttcgc tggaaaagaa gctttaaatc ctgaattttt
     3301 acaagataaa gtcaatgttt taaatttata tgaagcttac aataaatatg attataaggc
     3361 attttttgct aaagttgatt ttttaaaaga atatttacaa tttggaagtg ctaaaaattt
     3421 agcaaaaatc ctaaacgaaa tataaaaggg taaatcatgc aaaaagaacc aatgagtcaa
     3481 tttggctatg ataagttagc cgcagaatta aaagatttaa aagacaatca acgccctgcc
     3541 gttgtaatag aaatcgatac agcaagaagt catggggatt tgaaagaaaa tgctgaatac
     3601 catgctgcaa gagaaaagca agctttgata gaaagtcgta ttgcagagct tagtgacttg
     3661 ctagcaagag ctcaagtaat cgatccttcg agctatgaac acgatagtgt gaaatttggt
     3721 tcaagtgttg tgatcatgga tttggataca gaaaaagaaa gcaaatatac tctagtagga
     3781 atttgcgaag gaaatttaga taagggttat atttccatcg catctccaat agcaagagct
     3841 atgcttggga aaaaagaagg ggatgatttt aaagtgcgtt tgccaaaagg tgagagtgaa
     3901 tttgaaatcc tttctataaa ttatgagcct ttaaaatttt aaggataaaa aattttacta
     3961 caaaatggag cgattttaat cgcggatgct catgaaaatg aacaaagaaa gggattttgg
     4021 gaatttttac aagccttaaa aaaaggtaaa atttccaccc ctcaactcat acttatgggt
     4081 gatattttcg atttacttat aggcgaaatc tctgctacac atgaatttgc taaaccttac
     4141 atagaacttt tagaagaatt agccttaaag attgaaatta tatacttaga aggcaatcat
     4201 gattttaatc tttcttgttt ttttaaaaag gtaaaaattt ttaacttaca aaagcagccc
     4261 ataaagctta atttgcatac aagtaaaggt aataatcttg ttttaaatag tgcttttata
     4321 aaattagctc acggagatat ttttttacca cctcttttgc aatttactct taaaacatta
     4381 agaaatcatt atttgcttgt atttttgaat tttttaaata ttattactcg taattttatt
     4441 tcaaataaaa ttcttcaaaa tcaaaacaaa aaaaaccttt tttatcaaat aaaagatttt
     4501 gaaaatttag cgaaaaaaag atatgaaaaa tatgaaaatt taggattttg ggtatgtgaa
     4561 ggacactatc atcaaaatca tcaaatcaac aaagaaaaca ttaaatatct taacttagct
     4621 agttttgcat atgagagaag tttttttgta gtagaatatc aacaagaaat caaatttcga
     4681 gaacagaaat tgaggggtca aaatgtttga tgaaaatatc gtgaaaacgg gttcaaatga
     4741 aatggagctt gtcgatttcc gtatctttaa gcaagggcac gataaagtct atgaaggaat
     4801 ttatggtgta aatgtttcta aggtaaggga gattataaaa atcccaagcc ttacagaact
     4861 tccaggtgta cctgattaca tcgaaggtat ctttgatctt cgtggagtgg ttatacctgt
     4921 agtcaatctt gccaaatgga tgcaaatcac tgagccagaa agcactatgc taaaacctag
     4981 agttattatt actgaattta gtaatattct tattggtttt atagttcacg aagcaaaaag
     5041 aattcgtaga ataaactgga aagatataga accagcaact ttttctacag gatcaggtgc
     5101 tttagataaa ggtaaaatta caggtgtaac acgcattgaa aatgatgaag tgttgctaat
     5161 tttagatctt gaaagtgttg ttgaagattt aggaatttac gctccaaaaa cagatataga
     5221 ttttggaaaa atagaaaaat ttactggaac agcacttata cttgatgaca gcatgactgc
     5281 tagaaaacgc gtcaaagaaa tgatgcaaca gatgggcttt caagttgttg aagctaagga
     5341 cggcgtagag ggcataaaca aattagaaga attaagccaa gtttatggtg aaagtttaaa
     5401 cgatacttta aaaattatag taagcgatgt cgaaatgcca caaatggatg gtttccactt
     5461 tgctgcacgc attaaagaag atccaagatt taaagatatt cctataatct ttaactcatc
     5521 tttatcaaat gaatttatga atgagaaagg tgttcaagaa gctggtggag aaggctatct
     5581 tgtcaaattt aacgctagcg atttcttcaa tgaaattgca aaggttatta aaaaacatca
     5641 atctcaagaa caggggtaaa atatggaaga tatgcaagaa atacttgaag actttttggt
     5701 tgaagctttt gagcttgttg agcaaatcga ccatgattta gtagagcttg aatcaaatcc
     5761 agaagattta gaattattaa atagaatttt ccgtgttgca catacggtta aaggatcatc
     5821 aagcttctta aattttgatg ttttaacaaa gttaactcac cacatggagg atgttttaaa
     5881 caaagcaaga catggcgagt taaaaataac tccagatatc atggatgtgg ttttagagtc
     5941 tattgataga atgaaaactt tacttaattc cattcgtgat aatggcaacg atactgctat
     6001 tggtatggat atagaaccaa tttgcgcaag attaacagct atttcagagg gagagtctcc
     6061 tgttgtggca acagattcaa atgaaaaatc tactccacaa gcagaaccag aagcaccaaa
     6121 acaagaaata gctactccag aacctgaagt agatgttaat caattaagtg attctgaagt
     6181 tgaagctgaa atagaaagac ttttaaaagt tagaaaagct gaagatcaag ctcgtcgcgc
     6241 acaaaagaaa caaacaacaa atgtggcacc taaaccgact aacaatacag caaataaacc
     6301 tacggaaagt ggagagaaaa aagttcctgc ttcaggtagt aatgctagca gtatggatca
     6361 aaccatacgc gtggaggtaa aaagattaga tcacttaatg aatctaattg gggagcttgt
     6421 tttaggcaaa aaccgtttgc ttaaaattta cgatgatgtt gaagagcgtt atgaaggaga
     6481 aaaattcctt gaagaactta atcaggttgt aagtcaatta agtattatta caactgatgt
     6541 tcagcttgct gtgatgaaaa caagaatgca acctatagca aaagttttca ataaattccc
     6601 aagagttgtt cgtgatttaa gtcgtgaatt aggaaagcaa atagaacttg aaattacagg
     6661 tgaagaaact gaacttgata aatctatcgt agaggaaatt ggcgatccta tcatgcatat
     6721 gattagaaat tcatgtgatc atggtgttga ggatccagca actcgtgcag cgaatggaaa
     6781 acctgaaaaa ggtatagtcc aacttaaagc ttataatgag agcaatcaca tcgttgtaga
     6841 aattacagat gacggtaaag gacttgatcc aaatggctta aaagcaaaag ctatagagaa
     6901 aaatttgatt accgaaagag aagcagatca aatgacagac aaagaagctt ttgctttgat
     6961 tttcaagcct ggtttttcaa ctgcggctaa agtaacaaat gtttcaggtc gtggcgtagg
     7021 aatggatgtt gttaaaacca acatcgaaaa acttaatggg gtaattgaaa ttgatagtga
     7081 gttaggtaaa ggaagttcat ttaaacttaa aattcctctt accttggcaa tcattcaatc
     7141 tttacttgta ggaactcaag aggaattcta tgcaattcca cttgcaagcg ttcttgaaac
     7201 agttagagtg ccaattgatg atatctatac tatcgaaggt aaaaatgtat tacgcttaag
     7261 agatgaagtg ctttctcttg tgagactttc agatgtattt ggagttaaac aagtccttga
     7321 aagcggtgat caaacttatg tcgttgttat aggggtagca gaaagcaagc ttggtattat
     7381 agtagatact cttgtaggac aagaagaaat agttattaaa tccatgggtg attatttaca
     7441 aaatatccaa ggtatagcag gagctacaat ccgtggtgat ggtagggtga cattaatcat
     7501 tgatgtaggc gctatgatgg atatggccaa agaaattaaa gttgatatta aagcgcaatt
     7561 agaatcaagt gcgaaaaaac ctaaagaaca accaagtgat tataaagtct taattgtaga
     7621 tgattctaaa atggatagaa ctttaatgca aaaagcttta gaaccgctag gagttagttt
     7681 aatcgaagca acaaatggtg ttgaagcatt gaatattata aaatctggcg aacatgatat
     7741 tgatgcaatg cttatagata tcgaaatgcc aagaatggat ggatacacct tagctggtga
     7801 aattagaaag tattctaaat atcgcaactt accattgata gcagttactt caagaacaag
     7861 taaaactgac cgtttaagag gtgttgaagt gggtatgact gaatatatca ctaaacctta
     7921 ttctccagaa tacttggaaa atgtggttag aaaaaatttg aaactaggat aagaatatga
     7981 gtaatgaaaa attagagcaa attttgcaaa aacagcaaac tcagatggct ggtcctgatg
     8041 tcgatcaaag agaagatgat atcatccaac ttgttggctt tgtagttgga gatgaggaat
     8101 atgcgattcc aattcttaat atacaagaaa tcatcaaacc tatagaatat actagagttc
     8161 ctagtgtacc tgattatgtt ctaggggttt ttaatatgcg tggtaatgtt atgccgctca
     8221 ttgatctagc tcaacgcttt catttaggaa gttctaaaat gacacctcaa acaagatata
     8281 ttgttttaag aggtgagaca aatggaactg gagttggagg aaatgctggt tttgttatag
     8341 atagattaac tgaagcaatt aaaattcaca gaaacagaat cgatccacca cctgaaactt
     8401 tagttaaaga caaaggtatg atttatggta taggaaaaag agatgaaaat atcttaacta
     8461 tactcaaagt agaagcttta cttaagcgcg aattttaatg attaaacttt gtgtttttga
     8521 ctttgatgct actttaatgg atggtgaaac catcgatatt ttagctacag cgcatggcaa
     8581 gggtaatcaa acaagcgaaa ttacccgcca tgctatgact ggagaacttg attttttcga
     8641 aagtcttcaa aaacgagtaa gctttttaaa aggtatgtct tataaaaaag ttttagaatt
     8701 aagtagcaca cttccactaa tgcgtggagc acatgaactt atccaatatt taaaatctaa
     8761 aaatatacaa attgttattt ttagcggtgg ttttcatgaa ggcataaatc ctgctatgca
     8821 aaaacttgga attaacctcg gttttgcaaa ttatctgcat cataaaaatg acattttaac
     8881 agggctagtt ggtggggaaa tgatgttttc aaattcaaaa ggcttaatgc tacaacgatt
     8941 aaaaagcttt ttaaatttga aaacagatga agtgatgtgt gttggcgatg gggcaaatga
     9001 tttggcaatg tttaacgaaa gtggattaaa gattgcattt tgtgctaaag aaattttacg
     9061 ttctcaagct gatatttgca tagatataaa agacttaaaa gaaataataa aggtaatata
     9121 atgaaaaatt tttctctttg gtgtgatttt atagaaaata gttttttaga taatgaattt
     9181 ttaaatt
//
LOCUS       DARGEY010000054         9175 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.054, whole genome shotgun sequence.
ACCESSION   DARGEY010000054 DARGEY010000000
VERSION     DARGEY010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9175)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9175)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9175
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.054"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            139..1428
                     /gene="glmU"
                     /locus_tag="SF008_001103"
     CDS             139..1428
                     /gene="glmU"
                     /locus_tag="SF008_001103"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEG8233373.1"
                     /translation="MKTSILILAAGLGTRIKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALSGFEPKNERVLILCGD
                     MPLVEQTSLEALLGNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQKKIKKYWMQQGVIFHLPQSTFIGADVEFVGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSVNVEKGTLFINRAGHKMIKDYYYKKFQK"
     gene            1425..2579
                     /gene="coaBC"
                     /locus_tag="SF008_001104"
     CDS             1425..2579
                     /gene="coaBC"
                     /locus_tag="SF008_001104"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEG8233374.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNGLLKFAS
                     KMSFEALVDEVLCEENESWQNSNNHIAFSKDVDLVLFAPASVNSINKLAFGIADNLFI
                     QTLIAANKSLIIAPAANTNMFHHFSTQNSLKMLKENKALIIEPICKVLACKDEGVGAL
                     AEVKNIFNIVKRELLKEKFWCDKSVVITGGGTKEKIDDVRCVSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLNHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQGKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            2576..3193
                     /locus_tag="SF008_001105"
     CDS             2576..3193
                     /locus_tag="SF008_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233375.1"
                     /translation="MSMINSTLPIQMKVLAKSGYGHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILEDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFIFENKSCLFQMRKRAKYLEIYLYFSVFGALKILID
                     SQGVSIFTPFAKVQKFLNEHLDFNVSQENKIEPLFVFKRLFDFKG"
     gene            3197..3865
                     /gene="uppS"
                     /locus_tag="SF008_001106"
     CDS             3197..3865
                     /gene="uppS"
                     /locus_tag="SF008_001106"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HEG8233376.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
     gene            3862..4638
                     /locus_tag="SF008_001107"
     CDS             3862..4638
                     /locus_tag="SF008_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HEG8233377.1"
                     /translation="MIFFIIILGACLGSFCTSLASRIIEKKPFFISRSFCFSCDTKLK
                     YYEIIPIFSYIFLKAKCQTCKCHLPISLLINEILGAILLILVYSLSQNFYDFLFLSLF
                     LFNLFLLSLIDIKLKAVPQILLWSAFLFAFFYAFRESEILHFLIFKEFSGGFLLNAFS
                     FGGFVFLLKSLVFFLMNFQKKDEILENLGDADIIIMSCIGGILGFEYGFLVLFIASIL
                     TLPFFIFFRIKAIKEQELAMIPFLNIAFVAVLFYKNLGLF"
     gene            4638..5663
                     /locus_tag="SF008_001108"
     CDS             4638..5663
                     /locus_tag="SF008_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEG8233378.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDGDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENPQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            5660..6385
                     /gene="truA"
                     /locus_tag="SF008_001109"
     CDS             5660..6385
                     /gene="truA"
                     /locus_tag="SF008_001109"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEG8233379.1"
                     /translation="MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHLGIFSPL
                     LMASRTDKGVHASYAVASVECGDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHASYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(6382..7593)
                     /locus_tag="SF008_001110"
     CDS             complement(6382..7593)
                     /locus_tag="SF008_001110"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HEG8233380.1"
                     /translation="MLELNKIYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSAEQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEST
                     PLLKVSATKALGAEVILKGDNFDEAYVFATSYAKENNLSFIHPFEDEFVMAGQGTLIL
                     EMLDEISDLDMIIAPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVATLLHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIHVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(7593..8006)
                     /locus_tag="SF008_001111"
     CDS             complement(7593..8006)
                     /locus_tag="SF008_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEG8233381.1"
                     /translation="MNEKETISYIINTSKNIAIFALSPDKTKASYRVAEFLQRKNYKI
                     FPIYPKEEFILNEKVYRNLDQIEEKIDTLILFRKGEVALEILPKLVEKNIKNLWLQLG
                     ISNETAKKECKKLDINFIQNRCIMLEYPYFKTKEK"
     gene            8125..8541
                     /locus_tag="SF008_001112"
     CDS             8125..8541
                     /locus_tag="SF008_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HEG8233382.1"
                     /translation="MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNPNFDKSL
                     FSATGVKIMPFVVLLLFLSGGALAGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFI
                     LKKKNPLGAFIHPFVFVLCIAIVILAKLMNYFFIPC"
     gene            complement(8528..>9175)
                     /gene="trmA"
                     /locus_tag="SF008_001113"
     CDS             complement(8528..>9175)
                     /gene="trmA"
                     /locus_tag="SF008_001113"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HEG8233383.1"
                     /translation="IARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTAIN
                     EKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCE
                     LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVID
                     LIKKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSKV"
BASE COUNT         3044 a         1146 c         1559 g         3426 t
ORIGIN      
        1 taaaaacctt tttttgtttt ttattaaaga aatttaaatt ttatcttttg atgactaaaa
       61 actagtttaa gggtattagg attttaactt taaactgcta aaatagtctt ttagacttct
      121 taataacaaa ggtaaaaaat gaaaacttct attttgattt tagcggcagg attaggcact
      181 agaataaaat cacaaaagcc aaaggttttg caagagcttt gtcaaaaaag tatgatttta
      241 cacattttaa aaaaggcttt tgctttaagt gatgatgtaa gtgtagtttt atcgcatcaa
      301 aaagaacgcg ttgaaaaaga aattttagaa tattttccaa aaacacaaat tttagagcaa
      361 gatttgcaaa attatccagg aactgcggga gctttaagtg ggtttgagcc taaaaatgaa
      421 agagtgttga ttctttgtgg tgatatgcct ttggttgagc aaacaagttt ggaagctttg
      481 ttgggtaata atgcaaaatt aaatctagca gtttttaaag caagagatcc taaaagttat
      541 ggtagggtgg tgataaaaaa cgatagcgtt gaaaaaattg ttgaatttaa agatgcaaat
      601 acgcaagaaa aagagataaa tacttgcaat gctggggttt atgtgattga ctcgaggctt
      661 ttaaaagagc ttttaccttt gattgataac aataatgcgg caaaagagta ttatttaacc
      721 gacattgtaa aactagcaaa agaaaaagat gtgatgatta aagcagtttt tgtagatgaa
      781 gatgaattta tggggattaa tgataaattt gaactcagta tagctgaaaa tttcatgcaa
      841 aaaaaaatta aaaaatactg gatgcaacag ggtgtgattt ttcatttacc gcaaagcact
      901 tttataggtg cagatgttga atttgtaggt gaatgtgaag tatatgaaaa tgtaaggata
      961 gagggcaaaa gtaagattat aaactctatc attaaaagtt caagcgtgat agaaaattcc
     1021 atcgtagaaa atagcgatgt agggcctttg gcacatttgc gtccaaattg tgagttaaaa
     1081 aacactcata taggaaattt tgtagaatgc aaaaatgcaa agttaaatac cgtaaaagca
     1141 gggcatttga gctatttagg agattgtgag atagatagtg gaaccaatat aggctgtggg
     1201 actatcactt gtaattatga tggggtaaaa aagcataaaa ccatcatagg aaaaaatgtt
     1261 tttgtaggtt ctgatacgca atttatcgca cctgtaaaaa tcgaagatga agtgatcata
     1321 gcagcaggaa gcacagtaag tgtcaatgta gaaaagggta ctttgtttat caatagagca
     1381 gggcataaaa tgataaaaga ttattattat aagaaatttc aaaaatgaaa accatacttt
     1441 tagccattag cggtagtata gctttttata aatcttatga gcttatttcc ttgtttaaaa
     1501 aagaaggctt tagggtaaaa gttttgcttt ctaatggttt gttaaaattt gctagcaaaa
     1561 tgagttttga agccttggtt gatgaagttt tatgtgagga aaatgaaagt tggcaaaatt
     1621 caaacaatca catagctttt agcaaggatg tagaccttgt tttgtttgcc cctgcaagtg
     1681 ttaattctat caataaactt gcttttggta tagcggataa tctttttatc caaaccttaa
     1741 tcgcagcaaa taaatctctt atcatagctc ctgcggcaaa tacaaatatg tttcatcatt
     1801 ttagcacgca aaattcttta aagatgctta aagaaaataa agctttgatt atagagccta
     1861 tttgtaaagt tttagcttgt aaagatgaag gcgtaggagc cttagctgaa gttaagaata
     1921 tttttaatat cgtcaaaaga gaacttttaa aagaaaagtt ttggtgcgat aaaagtgtag
     1981 ttatcacagg tggcggcaca aaagaaaaga tcgatgatgt gcgttgtgtg agtaattttt
     2041 caagtggaaa aatggcaaag gccatagctg acgcttttta ttttttagga gctagggtaa
     2101 aacttttaag ctctgtggaa tttgatacgc cttatgagct ttgcaaattt gaaagttcta
     2161 aggatctaaa ggagcttttg gataaaaatt taaatcatga ctttttgatt atgacggctg
     2221 cggtgagtga ttttatccct caaagtgtaa aagggaaaat taaaaaaaat gagcatttac
     2281 agggtttaaa tttgcatcta tctttaaatg aagatttgct taaaacttgc aaatttcaag
     2341 gcaaaaagat aggttttaag atggaatttg attctcaaaa tgccttagaa aatgcgaaaa
     2401 aatctttaaa agataagcaa cttgatatgg tttgtcttaa tatcattgat caaaaaaatt
     2461 attttggaag cgatcaaaat gagctttatt ttatcacttt aaacaatgaa aataaaagca
     2521 ctttgcaaag caaagaaaaa ttggcatttg aattagtaaa atggtgtgaa aaattatgag
     2581 tatgattaat tctaccttac ctatacaaat gaaagtttta gctaaatcag gttatggaca
     2641 ttatacgctt ttattaaatc ataaaaagat tcaaaccaaa agcatgatag agcttgaaat
     2701 tggtgctgaa tatttagctg aactttatat gcaaaatggt ggagttatac aatttaaaca
     2761 tctttcaaag cgtcctaatt ttaaaccttt tgaagaggga ttggctttga taatcgctat
     2821 tttagaggat aaaatttctt ataaaaaatt catcatacaa aatcttttag attgtaaaga
     2881 tatagagcgt tatcagatat taaaagaaat gctttttgca agttttgaaa atatttatca
     2941 tattcctttt atctttgaaa ataaatcttg cttgtttcaa atgcgtaaaa gagcaaaata
     3001 tttagaaatt tacttatatt ttagtgtttt tggagctttg aaaattttaa tagattcaca
     3061 aggtgttagt atttttacac cttttgctaa ggtacaaaaa tttttaaacg aacatttaga
     3121 ttttaatgta tcgcaagaaa acaagattga acctttgttt gttttcaaaa ggctttttga
     3181 ttttaaagga tgaaaaatga atgaattaaa acaccttgct gttgttatgg atggcaatag
     3241 gcgctgggct agggctaagg gttttttggc aaaacttgga tattcccaag gagttaaaac
     3301 tatgcaaaaa ttgatggaag tttgcatgga agaaaatatt tcaaatttaa gcctttttgc
     3361 ttttagtacg gaaaattgga agcgtcctaa agatgaaatt gattttattt ttgaactttt
     3421 agatcgttgt ttagatgaag ctttagaaaa atttgaaaaa aataatgtgc gtttaagagc
     3481 tataggtgat ttatcgcgct tggaagataa agtaagagaa aaaattacct tagttgaaga
     3541 aaaaacaaag cattgtgacg cactttgtgt taatttggct ataagttatg gtgcaagaga
     3601 tgagattata agagctgcta agcgtgtgat tgaaaaaaaa cttgagctaa atgaagaaaa
     3661 tttaacgcaa aatttagatt tacctttaga tgtggatttg atgcttcgcg ttggaaacgc
     3721 taaaagactt tcaaatttct tactttggca gtgttcatat gctgaaattt attttagtga
     3781 aactttattt ccatctctta ccaagagaga atttaaaagg attattaaag aatttagaaa
     3841 tagagaaaga acttttggaa aatgatattt ttcataataa ttctaggggc ttgtttgggt
     3901 tctttttgca caagtttggc aagtaggata attgaaaaaa agcccttttt tatctcgcgc
     3961 tctttttgtt tttcttgtga tacaaaatta aaatactatg aaattattcc tattttttct
     4021 tatatttttt taaaggcaaa atgtcaaact tgtaaatgtc atttgcctat ttctttgtta
     4081 atcaatgaaa ttttaggcgc aattttgctt attttggttt attctttaag tcaaaatttt
     4141 tatgattttt tatttttatc tctattttta tttaatcttt tcttactttc tttaattgat
     4201 attaaactca aagccgtacc acaaatttta ctttggagtg cttttttatt tgcttttttt
     4261 tacgccttta gggagagtga aattttacat tttttgattt ttaaagagtt tagtggaggt
     4321 tttttactaa atgcttttag ttttggagga tttgtttttt tattaaaaag tttagttttt
     4381 tttctaatga atttccaaaa aaaagatgaa attttagaaa atttgggtga tgctgatatt
     4441 attattatgt cttgtatagg tggaatttta ggttttgagt atggattttt agtattattt
     4501 atagcttcta ttttgacttt gccttttttt atttttttta gaattaaagc aataaaagag
     4561 caagaacttg ctatgatacc ctttttaaat atcgcttttg tggcagtttt attttataaa
     4621 aacttaggat tattctaatg aagcttagtt taagatatgt tttaaatcaa tttttaagta
     4681 cgaatttgtc tatatttttc gtactttttg ctattgtatc tatggtgttt tttattcaac
     4741 ttgcaaaact tacttcaagt atagagatta gttttttgga tcttttaaag ctttatgggt
     4801 ttatgttgcc tagaatttta atttttacct tgcctatatc tttttttatt tctttaactt
     4861 tggctttgtt taggctttct aaggaaaatg aaagcatagt gctttttact ttgggatttt
     4921 caccaatgat tttggcaaaa tttttcctta aaattgcaag cttgattagt gcttttatgc
     4981 ttgttgtggc tttggtaatg atacctatag tatttgaact tcaggataac tttgtaaact
     5041 ataaaagcac tcaagtgaaa tttaactaca aaacaggaga atttggacaa aaatttttag
     5101 actggatgat ttttatagaa aaacaagatg gtgataagta tgaaaacata attatgtatc
     5161 gccctaaaca taaagcagat gataaagaac aacttatcat agccaaagaa gcgcatgtgc
     5221 aaagaaaaga tgatagcttt gcttttagct taaatcaagg caaaatgtat aattttgagc
     5281 aaggtcaaag tatttttagt ggagaatttg acactttagt agtaaatact cagtttaata
     5341 cagacaatct tcaaacaaag aaattttatg aatactggaa tgatttaaac gaaaatccac
     5401 aaagagcaag agaatttgtg atttatacaa ctatagcctt gtttccactt gctagtacgc
     5461 tttttgcgct ttgttttggt ttggttactt atcgttatga aaaaggctat gtgtatttag
     5521 gtatgtttgg agtgattgct atatattttg gacttttaag ttctttttct caacctccaa
     5581 ttttggcttg tcttggaatt ttttctttaa gtttatttgt ttcggcttat tgttttaaga
     5641 aaatgatttt gagtcgatat tgatgaaaat aaaaattata ttttcttatg atggctctgc
     5701 ttttttaggt tctgctactc agcctcataa aaaaggtgtt caagatgctt taagtggggc
     5761 cttatcgcat ttgggtattt tttcacctct tttaatggct tctcgtacag ataaaggagt
     5821 acatgcaagc tatgctgtag ctagtgtgga gtgtggagat tattttacaa atttagaata
     5881 tcttcaaaaa caacttaata aattttccca tccttttatc catatcaaaa aaattgaaaa
     5941 agtaaaagat gattttgaag taagatttga tgtaaaaagt agagaatacc gctatatatt
     6001 ttctcacgct tcttatagtc cttttatggc ttcttatgta catttttatc ctaaatttga
     6061 cctaggtaaa gctaatgagc ttttgggttt ttttgtagga aaaaaggatt taaagttttt
     6121 ttgcaaaagt ggaggggata ataaaacgac tttaagagaa atttttattg ctagagctta
     6181 tgcttataaa gattttagca tttttcattt taaagctaat ggttttttaa gagggcaaat
     6241 tagattaagc gtagcaagcg ttttaaaagt tttagaagga aaaatgagtg aaaaagaact
     6301 caaagaacag attgaggcta aaaagcaata caatcacttt ttagcaccgc caaatgggct
     6361 ttatttaagc cgtatatgtt attaaaaact ttcatagaaa ttaaaagcct tttgggttaa
     6421 aatttttctt atttcttctt ggtgttcttt acctttggtt tctagggtaa ttgaaatcat
     6481 cgcatcgcca taatcaagct tggtagaaaa tctatcatag tcgattttta ctatatttgc
     6541 attggctatt tttaagctgt ctgtaaggtg taataatgcc ccaggtttat ctactaaagt
     6601 aacatgaatt tgcatttttc tgtaagattt aaataaacct ttttctatga tgatatttag
     6661 catttgtgca tcgatattgc ctccgcttaa aactacgcca atttttttat gattttgtgt
     6721 atttattttt tgatgaagta gggtggctac actcgcagct cctgcgcctt caactatgat
     6781 tttatgtttt tcaagtaaaa acaataccgc attagcgatt tcttcatcat caacttggat
     6841 aaaatcatct acgcattcta aaataatatt aaaattaata ggatttgcat cacgcacagc
     6901 aataccatcg gctatagtgc gtacgctttt tgcatttttg atttttttgg catgaaaact
     6961 ttcatacatt gcaggagctc ctttggctcc aactccgatg attttaatgt ttggattgat
     7021 ttgtttagct gcacttgcga taccacttat aagtcctcca cctccaacag gtgcgataat
     7081 catatcaaga tcgcttattt catcaagcat ttcaagtatc aaagttcctt gtcctgccat
     7141 tacaaattca tcttcaaaag gatggataaa actaagatta ttttctttag cataagaggt
     7201 tgcaaagaca taagcttcat caaaattgtc ccctttgagt atcacctctg ctcctaaggc
     7261 ttttgtagca gaaactttta agagcggagt ggattctggc attacaataa ctgctttaat
     7321 gccaaatttt tttgcactaa tggccacgcc ttgagcatgg tttcctgcac ttgccgcaat
     7381 gactccgtgt tgtttttgtt cagcgctaag attggctatt ttattataag ctccacgaat
     7441 tttataagca cctgtaattt gtaaattttc atttttaaga taaatctcac tttgacaaat
     7501 atcacttaaa aaagaagagt atatgaaagg agttttgttt acaaatcctg aaatttgttg
     7561 ttttgctttg taaattttat taagctctaa cactattttt cctttgtttt aaaatacgga
     7621 tattctagca taatgcaacg attttgtata aaatttatat ctaatttttt acattctttt
     7681 ttggctgttt cattgctaat accaagttga agccataggt ttttaatatt tttttcaaca
     7741 agcttaggaa gaatttctag tgccacttcg ccttttctaa aaagtataag tgtatcgatt
     7801 ttttcttcta tttgatctaa atttctataa actttttcat ttaaaataaa ctcttcttta
     7861 ggataaatag gaaaaatttt ataatttttt ctttgtaaaa attctgctac cctataagaa
     7921 gcttttgtct tatctggact taaagcaaat atggcaatat ttttacttgt atttataata
     7981 taagagatag tttctttttc gttcattgtt aacctttatt ttggtatttt atcttaaatg
     8041 attaaaaaat taactaaagt gaattcaaaa aatgaaaaaa gtgttataat atagcaaatt
     8101 ccgaagttta ataaggaggg aaaaatggaa gaattttatc catatacttt aacaatccat
     8161 cttctttgtg ctattttgtt tataggttat ttgtttgttg atgtatttgt tttgggtgta
     8221 gttaaaaaga aaaatcctaa ttttgacaaa agtcttttta gtgctactgg agttaaaata
     8281 atgccttttg tggttctttt gcttttttta agcggaggtg ctttggcagg ttttcatttt
     8341 aaacctttaa atttactttt tgctgtaaaa attattttgg cttttggaat tttatcttta
     8401 gttgtttttt ctttattttg tcattttata ttaaagaaga aaaacccact tggtgctttt
     8461 atccaccctt ttgtatttgt gctttgtatc gcgatagtaa tactcgctaa attaatgaat
     8521 tattttttta taccttgcta agaaatactc cgcattcaag atgtggagta ttgacaaatt
     8581 gatcaaacag agcaaactct tccactctat gtgttaggct taattctttt aaattttctt
     8641 ttaaagtgat gggattgcaa gaaatataaa taatattttc atattttttt attaagtcaa
     8701 ttacgctttt atcaagtcct gcacggggtg gatcaactaa aacatgagag aaattaaaat
     8761 catccaatcg aatatctttt aaacgaaaaa attctctttc ttttttgata gcaagactta
     8821 attcttcgct tgaaagtctt gcaaagtgga tatttgttgt attattaagc tcacaatttt
     8881 ttaaagcaaa attaatattg ctttttgaaa tttcagtggc caaaacttta aaaaagaatg
     8941 gtgctaaagc taaagtaaaa tttccatatc cacagtaaag ctcaagtaaa tccattcttt
     9001 tttgagtatt taaaatttca cacacccaag taatcatttt ttcatttata gcagtattag
     9061 gctgaataaa acaatcgttg ttaaattcat aaaatatttt tctatcttga atatttaaag
     9121 tttgtcttag attttctgtt ttaaaaataa gttttttgcc tttacttctt gctat
//
LOCUS       DARGEY010000055         9125 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.055, whole genome shotgun sequence.
ACCESSION   DARGEY010000055 DARGEY010000000
VERSION     DARGEY010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9125)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9125)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9125
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.055"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..163
                     /locus_tag="SF008_001114"
     CDS             <1..163
                     /locus_tag="SF008_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RsmD family RNA methyltransferase"
                     /protein_id="HEG8233384.1"
                     /translation="EKIYHFLENLDLKTLNLIIFEHHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYAS"
     gene            222..1268
                     /locus_tag="SF008_001115"
     CDS             222..1268
                     /locus_tag="SF008_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HEG8233385.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGAGSHSTAATVMGG
                     ANVEREIPQNFSQNNDLTLSLKVADFKTANDIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNAVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            1268..1609
                     /locus_tag="SF008_001116"
     CDS             1268..1609
                     /locus_tag="SF008_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233386.1"
                     /translation="MKMDNFLNTYNMNSALLDRAAKARSLESSIKINDNDIVTKSKED
                     EALKEQTDAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            1672..1869
                     /gene="flgM"
                     /locus_tag="SF008_001117"
     CDS             1672..1869
                     /gene="flgM"
                     /locus_tag="SF008_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HEG8233387.1"
                     /translation="MINPIQQSYVANTTLNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATASAIADSLI"
     gene            1911..2345
                     /locus_tag="SF008_001118"
     CDS             1911..2345
                     /locus_tag="SF008_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HEG8233388.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDSLVNKMFDINDGTNNAYGDKKTNPESIFKINV"
     gene            2355..4181
                     /gene="flgK"
                     /locus_tag="SF008_001119"
     CDS             2355..4181
                     /gene="flgK"
                     /locus_tag="SF008_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HEG8233389.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITTGGVQVGTGTAIESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRFP
                     DLQNTGILKDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKINGGQLGAQLDLRGRNYSKSKGKYEDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNDNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASDMKVKDSILNDPSTVRASSNGVDSGNDMANKIIQ
                     LQYEKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            4198..4953
                     /locus_tag="SF008_001120"
     CDS             4198..4953
                     /locus_tag="SF008_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004306512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HEG8233390.1"
                     /translation="MKNFIHLKAKLDFLANQKNTNHSLFETPDPLQIAKIHNDEFTAL
                     ICALFAYGNAKNIVNFLKKLDFSLLNLQEKQIKKELKNLKYRFQNEKDIQEIFITLSR
                     LKNEISLYELFYQAYEKRENTTDAILAFIQKIKTLNSYSSYGYDFFFGKIWQNTPNSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHTHKISLTLGLLKRKIYDYKSV
                     LELTQNLKKLDANDPIKYDFALYRLGQSKERQI"
     gene            4964..5728
                     /locus_tag="SF008_001121"
     CDS             4964..5728
                     /locus_tag="SF008_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HEG8233391.1"
                     /translation="MGFEHLDTIYYFILFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPHLAWGVFSTALGAAIGSYSVLFVKDEQ
                     LKLIILIFLTLTFLYTALRPNLGKHESEPKIKNIKIFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMRKASINTKILNFTSNIIALAIFLWQYELLWAVGLLMGVGQVLGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(5721..6902)
                     /locus_tag="SF008_001122"
     CDS             complement(5721..6902)
                     /locus_tag="SF008_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEG8233392.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYLMHSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDSYGIFCIFLFV
                     VFIVMLILAYKNFHSFAFSCDFLFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISK
                     AFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVAMKSGRL
                     EVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGINF
                     N"
     gene            complement(6899..8458)
                     /locus_tag="SF008_001123"
     CDS             complement(6899..8458)
                     /locus_tag="SF008_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HEG8233393.1"
                     /translation="MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFKKLANFCNLH
                     FVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMIIRSKPCSLELLEQVKTFMICEK
                     IDTVIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
                     LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRK
                     TQDGSFELDFENERYDFRVSCLPLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILK
                     KILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDPIEYKIPLVQQILLN
                     SKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALST
                     IDRLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERC
                     HHSGFFGRELIAECLEINEDLSCAIRENQDKMILMELAKKYGFQTMFEQGLKKAKEGL
                     TSIDELLRVVR"
     gene            complement(8448..9035)
                     /locus_tag="SF008_001124"
     CDS             complement(8448..9035)
                     /locus_tag="SF008_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEG8233394.1"
                     /translation="MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKY
                     NKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISREKLYKELEEVKAVQENTHISKIE
                     IDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
                     LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK"
     gene            complement(9039..>9125)
                     /locus_tag="SF008_001125"
     CDS             complement(9039..>9125)
                     /locus_tag="SF008_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8233395.1"
                     /translation="YEINSFFDKNKSQEYILKLSALENGLLR"
BASE COUNT         3413 a         1483 c         1303 g         2926 t
ORIGIN      
        1 tgaaaaaatt tatcattttt tagaaaattt agatttaaag actttaaatt taatcatttt
       61 tgaacaccac tcaaccataa aaactcccga aaaaatccaa aattttcaaa aagtcaaaga
      121 aaagaaattt ggatcaacta gcttaagctt ttacgcttct taacttactt ggaacacttc
      181 ttgcttgatc tatcatcaac aatagattaa aggaagaatc catgagagtt ttaacgatat
      241 ttttactctt tatgacaagc atttttgcag tgcaaatcaa ggatgtagca aacactgtag
      301 gtgtaagaga taaccaactt ataggttatg gacttgttgt agggcttaat ggaagcggcg
      361 atggaacaag ctctaaattt acactacaat ccatctcaaa ccttttgcaa ggtatgaata
      421 tcaaagtaga tcctaacgat atcaaatcaa aaaataccgc agctgttatg gttacagcca
      481 aacttccagc ctttgcaaaa agcggagata aacttgatat taccgtttca tctatgggtg
      541 atgcaaaatc tttacaaggc ggaacacttt tactgactgc acttcgtggg attgatggtg
      601 aaatttatgc catagcacaa ggctctatct caacaggagg tttaacacct agaccaggag
      661 gagcaggttc tcactcaact gctgcaactg taatgggcgg agctaatgta gaaagagaaa
      721 ttccacaaaa ttttagccaa aacaatgatc taaccttaag tttaaaagta gcggatttta
      781 aaaccgcaaa cgatatagaa agagttttaa atactgtctt tggcgaagaa gtagctaaag
      841 ccatcgactc tcgcacagta aaactcaaaa aacctgaaga tctttcaaat gttgatttta
      901 tggcaagagt tttagaacaa gatatagctt ataaaccaca aagcaaagtt atcatcgatg
      961 aaagaacagg aacagtgatt gctggagttg atgtagaggt agaacctgtt ttaatcactc
     1021 ataaagatat cactataaaa atagatccaa acaataacgc agtagctaat caaaatgaaa
     1081 tcgatatgaa agatggtggt tttgtagatc caagttcaaa taccttaaga atcaacaatg
     1141 caaaaagcac agttgcaaat atagctagaa tgctgaacaa gcttggagca accccaaatg
     1201 acattatcgc tattatggaa aatttaaagc gcgcaggtgc aattaacgcg gatttggaga
     1261 tcatctaatg aaaatggata attttttaaa tacttataat atgaatagtg ctttacttga
     1321 tcgtgcagcc aaagcaagaa gtttagaatc aagcatcaaa ataaatgaca atgatatagt
     1381 tacaaagagc aaagaagatg aagccttaaa agaacaaacg gatgcttttg aagcattttt
     1441 tttaaagcaa gttttagacg tatctttaaa aagtcaaaat tcactctttg gaaaagatgc
     1501 cagcgatgaa atatactctt ccatgtataa cgataccatg agtaaagctt taagtggagg
     1561 tatgggtttt tcaaaattat tatacgattt tttaaaagaa aggggttaag ttttttaaat
     1621 ttgggtcgat atggtttgta gaggattata actaagatca aggaggcaga aatgatcaat
     1681 cctatacaac aaagttatgt ggcaaatacc acattaaata caaatagaat agataaagaa
     1741 actaaaacaa acgatactca aaaaacggaa aatgataaag cgagtaaaat cgcagagcag
     1801 attaaaaacg gtacttataa aatcgataca aaagctacgg cttctgcgat tgctgactct
     1861 ttaatctaaa actttcattc tccttttttt gagagagaaa aggagaaaat atgcttaaac
     1921 aaagacttga tgaagtaaat gctatcttag caaaacttat tgctttaacc gaagaagata
     1981 tagaaaatat caaagtggct aaacatgaga gtgtaacgcc aagtgtagaa gaaaaaaaca
     2041 aacttatcgc cgaatttatt acagctaaaa aacaacttga tgttgccttg gttgagctaa
     2101 ataatagctc tacaaaaggg cttagtgaac tcttagatga tgaagataaa caaaaactag
     2161 atctacttaa aaaaaatctt caaaaccttc atagtaaaaa caaagagtat gctaaatttg
     2221 ttcttattgt caaagatttt cttgatagct tagtaaataa aatgtttgat atcaatgatg
     2281 gaacaaataa tgcttatgga gataaaaaga caaatccaga gtcaattttc aagatcaatg
     2341 tataaggatt tataatgggt atttttggaa cattatacac aggtgttaca ggcttaaagg
     2401 caagcgaagt tcaaatcgca acaactggaa acaatatctc aaatgctaat gcaacttttt
     2461 atacacgcca aagagtagtg caaactacaa atgggtatat taccacaggt ggagttcaag
     2521 taggcacagg aactgctata gaaagtatag tgcgtttgca tgatgagtat tcttactata
     2581 aattaaaagg tgcatcaaac caactagaat acactaaata tatggcttca accttacaag
     2641 aaatcgctca gcgttttcca gacttacaaa atactggaat tttgaaagat ttagaaaatt
     2701 ataacaaagc ttggaatgat tttgcatcta accctaatga aaatgccaca aaaatagccc
     2761 ttgtaaaagc ttctcaaacc ttaacagaaa gcgttaataa cacttttgca accttggata
     2821 aaatccaaaa aaaagtaaat gatgatatta aaaatacagt tgatgagatt aatagaatcg
     2881 gtgaagaaat tgctactata aataaacaaa tttatggaca agaagcctta ccaacagaac
     2941 acgcaaatga gcttagggat agaagagatg aacttgaact taccctttca aagctagtta
     3001 gtgcagttgc aagcaaaaat gaaatcaatc aagacaatcg ccttgataca accatcactg
     3061 atccaggaca tcaatacaat ctaagtatag aaggttttag tatagtagat gggataaatt
     3121 ttcatccttt aaagcttgat tatgatgata aaaataaatc ttatagcatt tattatgaaa
     3181 ctcctgatga aaaagttcgc gatcttactg caaagattaa cggtggacag cttggtgctc
     3241 aacttgactt acgcggtaga aactatagca aaagcaaagg aaaatatgaa gatggaatta
     3301 tccaaggtta tatggattct ttagatactt ttgctaagac catgatcaat gaaactaaca
     3361 atctttatgc gagttctgcg aaaagttctg ttacttctga ttatctatct ggacttaagg
     3421 gagatattcc tttagttaat tacgacagaa ccatacaacc aggaagtttt gatatagtca
     3481 tttatgatga taaaggcgat aaaaaactca ccaaaaccat caccatagat gtaaatacaa
     3541 ccatgaatga tatcatgcgt caaatcaatg ccaatacaga tgataatgac aataaaaatt
     3601 caaacgatga tgttgatgat catatcaatg caagttttag ctacgatgca aaaactggag
     3661 atggtttatt ccaaatcaat gcaaaatcag gctttaaggt agccattgaa gataaaggca
     3721 caaatttcgc aggtgcgttt agcataggtg gttttttcag cggaactgat gcaagtgata
     3781 tgaaagtaaa agattctatc ttaaatgatc caagcacagt aagagcaagc tcaaatgggg
     3841 ttgatagtgg caatgacatg gcaaataaaa tcatccaact tcaatatgaa aaagttaatt
     3901 tttataatga agatggtact atcgataatc ttactatgga agaatattac cgcaaactta
     3961 caggtaaaat agcctcagat ggtgaaaata acaatgttgt aaattcaagc aatgaaactc
     4021 tttataattc tgtttatagc gaataccaat ctaaaagtgg tgtaaataca aatgaagaat
     4081 tagccgctct tatacaatat caatcaagtt acggcgcagc agcaaaaatc gtctcaactg
     4141 tagatcaaat gcttgatacc ttactaggac ttaaatctta agctctagta atatcaagtg
     4201 aaaaatttta tccatcttaa agccaagctt gattttttag ccaatcaaaa aaacaccaat
     4261 cattcccttt ttgaaactcc agatcctttg caaattgcta aaattcacaa tgatgaattt
     4321 actgccttaa tttgtgcttt atttgcctat ggaaatgcta aaaatatagt aaattttcta
     4381 aaaaaacttg atttttcttt attaaacctt caagaaaaac aaataaaaaa agaacttaaa
     4441 aatttaaaat accgcttcca aaatgagaaa gatatacaag aaatttttat cactctttca
     4501 agactgaaaa atgaaatttc actctacgaa cttttttatc aagcctatga aaaaagagaa
     4561 aataccacag atgccatctt agcttttata caaaaaatca aaaccttaaa ttcatattca
     4621 agttatgggt atgatttttt ctttggaaaa atttggcaaa acacccctaa ttcacctctt
     4681 aaacgctata atatgtatct aagatggatg gttagaaaag atgaacttga tcttggactt
     4741 tttaccaaaa ttcacaccaa agatctttta attccacttg atacacatac acataaaatt
     4801 tccttgacct taggacttct aaagcgtaaa atatatgatt ataaaagtgt tttagaactc
     4861 acgcaaaatt taaaaaaatt agatgcaaat gatcccataa aatatgactt tgcactctat
     4921 cgtttagggc aaagtaagga aagacaaatt taaggagtga aaaatgggct ttgagcactt
     4981 agatacaatt tattacttca tacttttttt tgtagctctt tttgctggtt ttatagattc
     5041 tattgtaggt ggaggagggc ttattactct accagcactc atagcctgtg ggattcctgc
     5101 gcatttatct ttagcaacaa acaaactcca aagcgtcttt ggttctttta cggctacttt
     5161 aacttatttt aaatccacca ctctacctca tcttgcttgg ggtgtttttt ctacagcctt
     5221 aggagcagct ataggaagct atagcgttct ttttgtaaaa gatgagcaat taaagcttat
     5281 tatcttaatc tttttaactc ttactttctt atatacagcc ttacgtccta acttaggcaa
     5341 acacgaaagc gaacctaaaa taaaaaatat caaaattttt catttaattt gtggcttaac
     5401 tttaggattt tatgatggat ttttagggcc tggaacgggt tcattttgga tttttgcttg
     5461 tgtgatgcta ctaggtttta atatgagaaa agcaagcatt aatactaaaa ttttaaattt
     5521 cactagtaat atcattgctc ttgctatatt tttatggcaa tacgaacttt tatgggctgt
     5581 aggcttgctt atgggcgtag gacaagtttt aggagcttat ttaggctcaa aacttgtatt
     5641 aaaaactaat ggaaagttta taaaaacttt atttttaatc gttgtaggag ctactatcat
     5701 taaagtagct tgggattatt ttagttaaaa ttgatccctg agctaagctc ccacataggt
     5761 aaaaatatac ctaaagccaa aaacaaaact aaaagcgcca caaataaagt catcataggc
     5821 tctaaaaaaa tcaaaaatct atccattaaa ttttcacttt tttgttgata atatttggca
     5881 atttcttcac ttaacacttc aagtcttccg cttttcatcg caacactaag catagaaaat
     5941 accaaagaat caaaaatatc aatcttttta aaagcctgac ttaactcaag accagaatct
     6001 ataaaactaa aaagtttttt atactgaaaa attaaaaatt tattttcaag ccctataata
     6061 gctaaatcaa aagctttaga tattgaaatt ccatttttta aaagcaaaga aaaaaccata
     6121 aaaaaataat aattttgatt ataaataatc aaacgagaaa tcaaaggtat ttttaaaaat
     6181 aaaaaatcgc aagaaaaagc aaaagaatga aaatttttat aagctaaaat aagcataaca
     6241 ataaaaacaa caaacaaaaa tatgcaaaaa attccatagc tatctaaaaa attataaatt
     6301 tctaacatta catgcgtgat aaaaggcaaa ctcgtgccta aattttcaaa taaatcttta
     6361 aaattaggca ctacaaaaag cattaaaaac aaaaatgctc cgataatact taaaaaaacc
     6421 aaagtaggat atctaaaagc ctttttcaat tgtttttgac tctctaagct tttttctcga
     6481 agtttagaaa tttgactaaa cacttcgctg atttttcctg tcttttcagc cgtttttatc
     6541 aaagctagct ccgcacgatt taatccaaaa ttagcatttt caaaagcttg atttagattt
     6601 tgggctaaaa ttaaattgtc taatattttt ttcataatct tgcaagaatg cataagatat
     6661 aattctctaa tcgcttcttg aacacttaat ccaacttcac acaacaaagc cagctcttta
     6721 aaaaagagta taaaattttc atcttttaat ctctgaaaat tagatttttg aatttctttt
     6781 atatcaatga ttttccaatt ctttgataag gcttttgctt gtgctgtatt taaattttca
     6841 gcttttatag tttttgtata attttgattg tttttaagaa attccacttc ataaaatttc
     6901 atcttacaac ccttaaaagc tcatctatac ttgtaagacc ttctttggct ttttttaaac
     6961 cttgttcaaa catagtttga aagccatatt tttttgcaag ctccattaaa atcattttat
     7021 cttgattttc cctaattgca caagataaat cttcattgat ctctaagcac tcagcgatta
     7081 attctctgcc aaaaaatcca ctatgatgac aacgctcaca tccttttggt tcaaaaaatt
     7141 caccttcaaa ttcaatataa tgttttttgc ttttttgctt acaccaagga caaagttttc
     7201 taaccaaacg ctgtgctata acaagactca aagccgatgc tatcaagtaa ctttttgctt
     7261 gcatatccaa aagcctatca atggtgctaa gagcatcatt agtatgcaag gtgcttaaaa
     7321 gcaaatgacc tgttaaagaa gctttaagtg caatatctaa actttcttca tcgcgaattt
     7381 ctcctatcat gataatatca ggatcttgcc ttaaaattgc tcttaaaaca ctattaaact
     7441 cgactccaac ttttgaatta agcaaaattt gctgcactaa aggaatttta tattctatag
     7501 gatcttctgc ggagataatc tttttttcaa tacttttcaa ctcatttaaa cacgcgtata
     7561 aagttgtgct tttaccacta cctgtaggac cggttaataa aatcattcca ttgggacgat
     7621 gtaaaatctt ttttaaaatt tctaaatttt tatttccaag atttagttta tacaaatcca
     7681 aaatttcttt atcatgtttt aaaattctta taacaacact ttcgccataa atcaaaggca
     7741 aacatgaaac acgaaaatca tatctttcat tttcaaaatc taattcaaaa cttccatctt
     7801 gtgtttttct tgattcagct aaattcaaac aagctaaaaa tttgacatga aaaaccaaag
     7861 cttcataaat atccttctca aaaatagcaa attcacgcaa aattccatca accctaaacc
     7921 taatcaaagc atcatcattc cttgcttcta tatgaatatc actcgcatga aaagataaaa
     7981 tttcatgtaa taaaaaatca aaaatttgac tgatgcaact ttgatcatct cttttgtgat
     8041 tttcttgcca ttcaagtcta agcttaatgc ttaatctttt aatctcctct tgaatgcgaa
     8101 tttgatttaa aattttagct atctttaatt catcggcaat tacagtgtcg attttttcac
     8161 aaatcataaa agtcttaact tgctctaaaa gctctaaaga acaaggtttg gatctaataa
     8221 tcataaagcc gtcattgttt ttaataagca gaaatttaaa ttttaaaagt aaagaaaaag
     8281 gtataccttc ataaataaaa tcattatctt catctaaatc aacaaaatgc aaattacaaa
     8341 aatttgctaa ttttttaaaa aaatcccaag aagtgatatt aaatttagtg caaatttcat
     8401 caagacttat ttcattatca atataagctt gaaaaatttt atccattcta ctttccatct
     8461 aattccatta aaccataata atttatataa gcatctaaag cactttgagc ttctttttct
     8521 tcgcctaaag ctcttttagc ctgagcaaaa atcagccaag aatcttgttt ttgcttgtca
     8581 agttcattgg cttttaaagc ccaaaatatt gtcttttgat aagctttaat atcaaaatac
     8641 ttcttagcta aatttaatgc cttttcatag cttggatttt gataaaaaga tttttttaaa
     8701 tcagaaatat ttaaaatttt agaatcaatt tctatcttgc taatatgtgt attttcctgc
     8761 accgctttaa cttcttctag ttctttatat aacttttccc tagaaatctt atttttttct
     8821 tgtaaaattt gcgcttgaag aatcttttgc tccaaatgct ttttatgttc aatagcttgc
     8881 aaataaatat ttttttgctt attatatttt tgcattagca caaaaaaaca aaatgctatt
     8941 actgatatta gaataattaa taataaatat tttaaatatt ttttaagtaa aaagtattta
     9001 tacctaagct caagctcttt aattctttct tgcatatctt accttaataa gccattctct
     9061 aaagcactaa gctttaaaat atactcttga cttttgtttt tatcaaaaaa actatttatc
     9121 tcata
//
LOCUS       DARGEY010000056         8982 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.056, whole genome shotgun sequence.
ACCESSION   DARGEY010000056 DARGEY010000000
VERSION     DARGEY010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8982
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.056"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1557)
                     /locus_tag="SF008_001126"
     CDS             complement(<1..1557)
                     /locus_tag="SF008_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HEG8233396.1"
                     /translation="MKNKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLI
                     QKAVIDKDEIWLKAEGENYVIIKDGIDIKTLLSKVPVEVKKDNTLWVFFVLLIFIIAL
                     FISLGYFARKKELAKYPISNKNQNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEV
                     KMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG
                     SSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLL
                     TQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKD
                     KNNNINLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKK
                     KILSFNDEEKKIQATYQAAKALSAYYFDIGFEKITLIEDRFKEYEHNIRSKSELINRI
                     KVYLAGSRAMRLIYNESYTNSQDDFLKIKELLDYMLSFDMLKESNLSEQKKEMDEFLN
                     SMKDKILKLSE"
     gene            complement(1561..2811)
                     /gene="mtaB"
                     /locus_tag="SF008_001127"
     CDS             complement(1561..2811)
                     /gene="mtaB"
                     /locus_tag="SF008_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HEG8233397.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTTLGKLLQKMGQILGIKRIRL
                     GSLEPAQLDESFLEILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNTLKSIVEKNNYEFRKKNQVSLEVLVENQKDGFFEGYDQFFNKIKIKSDKD
                     IAKEWIVISEYEVQEKSNFTNLKG"
     gene            complement(2808..4379)
                     /locus_tag="SF008_001128"
     CDS             complement(2808..4379)
                     /locus_tag="SF008_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HEG8233398.1"
                     /translation="MKKIIILTFFVVFAFGDVNRTIINNINEKINTLNTVISASIWNI
                     RYENFIKYQDINDELIILNLNLKKTSDIHQQEELKRKIANLEEQLSLLKEYKDLNFAQ
                     SLSAPDNIETLSKLTNPLAIIGAFSHIKKLKGEKEEYIFKFNDFKNLVDKIREKNSEL
                     KELVELKPSVENIEALKASDKKLEEFEQALNFASVSYSVYEKKIDEELSRVSAEIKVQ
                     SLRAVNILVAIVIVIAIAFMLKFIAKKYIKDSERYYTATKIINFININIIFLILLFAY
                     IENITYLVTILGFASAGLAIAMKDMFMSMLGWCVIIFGGSFRVGDRVKVFQNDTTYIG
                     DIIDISFLRITLYEELTLETYNKNRRSGRIIFIPNNYVFTNLLANYTHHGMKTVLDGI
                     DISVTFDSNLDKAQEIVENIVTRHAKGYTELARKNIARLQHEYSIKNPKVEPRFFMFF
                     EHWGMRISAWYMTNAYAALVLRSTISKEIIKEFNKHKDIKIAYPSQNLYLGNLNQNHF
                     EQHHENMYFHARNKD"
     gene            complement(4376..5431)
                     /locus_tag="SF008_001129"
     CDS             complement(4376..5431)
                     /locus_tag="SF008_001129"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEG8233399.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAKEIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCEGSFLK
                     TLSSRELAAGMAEFIKMAAMFDDSILDFIEKIDEKSFLNATCENEIFTQIIARSIELK
                     SRVVEQDEKESGLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGF
                     LDKMQSQRIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLASPLGKGLI
                     KGDISKEDIIATLREFQ"
     gene            complement(5477..6877)
                     /locus_tag="SF008_001130"
     CDS             complement(5477..6877)
                     /locus_tag="SF008_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HEG8233400.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDMKNMNQNMQERVLDTTLKLTQKSNAKRFFIHVINPKLGVMYE
                     KLKKLSEDKEGVFFDYFNTDFKQISTWLQNNDIGLVVTDIKNFEKEKQAFFDLKIPIM
                     KVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYYYNPNSQNTTDMEE
                     YFRSLSKLYDKNIQIINKNDENPLLNLQYREDLLQFVSFQKELLNRDFGRNLSTNLNR
                     HYYKMRQNYQLFIPVE"
     gene            6907..8028
                     /gene="tgt"
                     /locus_tag="SF008_001131"
     CDS             6907..8028
                     /gene="tgt"
                     /locus_tag="SF008_001131"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEG8233401.1"
                     /translation="MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISV
                     DRTILWAKEAIAYHKNMQNKGIGIGQNIFGIIQGGTDYEERKRCALSLNEMPFDGLAI
                     GGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEVIDSTCSCYTCRNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            8030..8797
                     /locus_tag="SF008_001132"
     CDS             8030..8797
                     /locus_tag="SF008_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEG8233402.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYGQKIFVYVGLNLETWLFND
                     EKIYKLQNEEFKLSSIEEFSNFIKSILEDFKVQNTHFQNLLEHKEGIILKGGFVKNFY
                     KKSFVLRQKINKNLKQINLLSEAFNLLLSEQAQYKKHLKILNLSISILNKNTKEHLTR
                     IDTLYTLTSAIKNEKMNKSIYLLSILSSIFLPLNLIVGFFGMNTNNLFFKDSPYGTLY
                     IFSLICCILIVGFIFYYSKKTKEFDLDEGKKAKKQTK"
     gene            8850..8926
                     /locus_tag="SF008_001133"
     tRNA            8850..8926
                     /locus_tag="SF008_001133"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8884..8886,aa:Arg,seq:gcg)
BASE COUNT         3120 a         1531 c         1057 g         3274 t
ORIGIN      
        1 ctctgataat tttaaaattt tatccttcat agaatttaaa aattcatcca tttctttttt
       61 ttgttcactt aaatttgact ctttcaacat atcaaaactc aacatataat caagcaattc
      121 tttaatcttt aaaaaatcat cttgcgagtt agtataactt tcattgtaaa tcaatctcat
      181 ggctctagaa ccagccaaat aaacttttat acgattgata agctctgatt ttgatcttat
      241 attatgctca tattctttaa aacgatcttc aatgagagtg attttttcaa atcctatgtc
      301 aaaataatac gcactcaaag cttttgcagc ttgataagtg gcttgaattt tcttctcttc
      361 atcattaaaa cttaaaatct ttttcttacc taaaagaact ttatttaata cagcataaaa
      421 atcgctttcc tcaactaaag cactatttct tcttaaagca ttaattgctg cttcattgac
      481 caaagtttca agccctgctc cactaaaacc tacgcttgct ttagcgattt tatttaaatt
      541 gatattattg tttttatctt tcatataaat ttctaaaatt ttaagtctat ccttaaaatc
      601 aggcaaagat aaaaaaattc tcctatcaaa acgccccgaa cgcaataaag caggatccat
      661 aagttcgatt ttatttgtcg cagctataac aataacccca ctattatcct caaaaccatc
      721 catttgagtt aaaagttgat ttaaagtgct atctctttca acatttgaca tttctcctct
      781 tgccttacct acggcatcta tttcatcaat aaaaactatg ctaggcgcca tcattttagc
      841 ttttgaaaaa agctctctaa ctctttttgc acccatacct acataaattt caacaaaact
      901 tgaaccactt tgataaaaaa atggcacccc tgcttctcct gcaactgctt ttgctatcaa
      961 tgtttttcct acaccaggtg ggcctaccat taaaacacct tttggcattt ttacaccaaa
     1021 ttctttatat tttttaggat tttgtaaaaa atccacaagt tcgcttagct ccattttaac
     1081 ttcatcaaca cctgctacat cattaaaagt aatatttgaa atcacaggtt ttatatggga
     1141 actttctaaa tttatatttg aattttgagc ttgagtgtga ttttgattct tatttgatat
     1201 tggatattta gccaactctt ttttacgagc aaaataacca agacttataa aaagtgcgat
     1261 aataaaaata agtaaaacaa aaaacaccca aagcgtatta tcttttttaa cctctacggg
     1321 aacttttgat aaaagtgttt ttatatctat gccatctttt ataattacgt aattttcacc
     1381 ttctgcctta agccaaattt cgtctttatc aatcacagct ttttggatta aattttggct
     1441 taatagactt tgataaagat tttcatctat atatttaggt tcatttttaa aatataaaat
     1501 tcccaaaagc atacataaaa ccataaaaga tgctaaaatt atctttttat ttttcattat
     1561 ctagcctttt aaatttgtaa agttagactt ttcttgtact tcatattcag atataacgat
     1621 ccattcttta gctatatctt tatcactttt aattttgatc ttattaaaaa actgatcata
     1681 accctcaaaa aaaccatctt tttgattttc taccaaaact tcaagtgaaa cttgattttt
     1741 tttcctaaat tcataattat ttttttctac tatggatttt aaagtgttta gcctttcttt
     1801 agctaaagtt ccatttatca catctttcat ggtagcagaa tgcgtgttgt ttctagggct
     1861 aaaaataaaa gcatggatat gagtgagtgg aaattcttta aaatttctta aagcttcttg
     1921 ccatagctct tcactctcgc ctggatgagc tactataaaa tccgtcccta aagcatatcc
     1981 tttgcttgct atagtattaa aaagctttaa atcattatcc gtatgtgatc ttcttctcat
     2041 tatacgaagc attttttcac ttgtatgttg caatgcaata tgtaaatgcc tttcaagcca
     2101 agcttcatct aagatttcta aaaaactttc atcaagctgt gcaggttcta aactacctag
     2161 ccttatgcgt tttataccta aaatttgtcc cattttttgc aaaagcttgc ctagggttgt
     2221 gccattttta agcccatatg aacctatatt agtccctgtt aaaacaattt cactataacc
     2281 attagctccc aaaatttcaa cctgttttaa aagagctttt tcatccacac ttcttgattt
     2341 tcccctcacg ctaggaataa tacaataaga acaagcaaaa tcacaacctt cttgaatttt
     2401 cacaaaagct ttggtatgat tttcatactc acaaactata tctttatcaa taaaatttaa
     2461 atttccaagt tcataaaaac ttgtctttgc tcctaaaaat tcattgattt tatctttatt
     2521 tgacgctcca agcactccaa aaacttgctt tttatctaaa agctccttac ctttgcttac
     2581 agcaccacaa cctgtaagta taactttaat gccttttttt tgcatggtat ttacataaga
     2641 ctttatcccg ctatcagctc catttgtaac cgtgcaagaa tttacaacga taatttgtgc
     2701 tttattctca tcatttataa tctcataatc ttttacataa ctttttaaaa gctctgtatc
     2761 ataaatattt gtgcgacacc caaaggtttt aaaaaaaact ttttctttca atccttattc
     2821 cttgcatgaa aatacatatt ttcatgatgt tgttcaaaat gattttgatt taaatttcct
     2881 aaatataaat tttgcgatgg ataagcaatt tttatatctt tatgcttatt aaattctttt
     2941 ataatctctt tgctaatcgt acttcttaat accaaagccg cataagcatt agtcatatac
     3001 catgcagaaa ttctcattcc ccaatgttca aaaaacataa aaaaccttgg ctccacttta
     3061 ggatttttaa tactatattc atgttgtaaa cgagctatat tttttctagc aagctcagta
     3121 taacctttgg catggcgtgt aacaatattt tccacaattt cttgagcttt gtcaagattg
     3181 ctatcaaaag taacacttat atcaatgcca tcaagcacgg ttttcatacc atgatgggta
     3241 taattagcaa gcaaatttgt aaaaacatag ttattaggaa taaatataat acgcccacta
     3301 cgacgatttt tattataagt ttcaagcgta agctcttcat aaagagtaat gcgtaaaaaa
     3361 gaaatgtcta taatatctcc tatataggta gtatcatttt gaaaaacttt tacacgatcc
     3421 cctactctaa aacttccgcc aaaaataatc acacaccatc caagcataga cataaacata
     3481 tctttcatag caatagctaa gcccgcagag gcaaaaccaa gtatagttac aagataagta
     3541 atattttcta tataagcaaa gagcaaaata agaaaaataa tatttatatt aataaaatta
     3601 ataatcttcg tagcagtata atatctttca ctatctttaa tgtatttttt agcaataaat
     3661 ttcaacataa aagctatagc tataacaata acaatagcaa caagtatatt tacagccctt
     3721 aagctttgaa ctttaatctc agcacttact cgagaaagct cttcatcaat ttttttctca
     3781 taaacagaat aagaaacact agcaaaattt aaagcttgct caaattcttc caacttttta
     3841 tccgaagctt ttaaagcttc tatattctca acacttggtt taagctcaac taattcctta
     3901 agttctgagt ttttttccct gattttatct actaaatttt taaaatcatt aaatttaaat
     3961 atatattctt ccttttctcc ttttaatttc ttaatatgag aaaaagctcc tataatagcc
     4021 aaaggattag taagcttaga taaagtttct atattatcag gggcactaag actttgtgca
     4081 aaatttaaat ctttatattc tttaagcagg ctcaattgct cttctaaatt tgctatcttg
     4141 cgtttaagtt cttcttgttg gtgaatatcg gaagtctttt ttaaattaag atttaaaatg
     4201 attaattcat catttatatc ttgatatttt ataaaatttt cataacgtat attccaaata
     4261 ctagcactga ttacagtatt taaagtatta attttctcat ttatattatt aataatagtc
     4321 cgatttacat caccaaaagc aaaaacaaca aaaaaggtta aaataataat ttttttcatt
     4381 ggaattctct taaagttgca attatatctt ctttagaaat atcacctttt atcaaaccct
     4441 tacccaaagg actagcaaga acaaaattga tttttttatt agagcttttt ttatccatga
     4501 aaaaagcttc ataaaattca tctacattgt tgattttata tgatattggc aaaccgaatt
     4561 taagtaaaat atcttttatt ctttgacttt gcattttatc caaaaaccct aaatttaaag
     4621 ccaattgatt tgccataacc atacctatag ccaccgcttc tccgtgtaaa taaagcttat
     4681 aatctgtaaa attttctata acatgagcaa aagtatgccc ataatttaaa agcattctaa
     4741 gccctgattc tttttcatct tgttcaacaa cccttgattt aagttctatg cttcttgcta
     4801 taatttgagt aaaaatttca ttctcacaag tagcatttaa gaaacttttt tcatcaattt
     4861 tttctataaa atcaagtata ctatcatcaa acattgctgc cattttaata aattcagcca
     4921 tgcctgcagc aagttctcta gagctcaaag tctttaaaaa agaaccctca caatatacag
     4981 ctttaggttg ataaaaagtg ccaataagat ttttaccaaa attattatta acacctgttt
     5041 ttccacctac tgctgcatca acgcaagcta aaagtgtagt aggaatattt ataaaatcaa
     5101 tacctctttg ataaatacta gcagcaaatc cgcccatatc actaatcacg ccaccaccaa
     5161 aacttataag cacgcttttt ctatccaatt tagaattaaa catttggttt aaaatttctt
     5221 ccatggtgct taaattttta tattcttcac catcttttac agtggcaata aaaatttctt
     5281 ttgccttaat tttagaaagt aatgttttca aatgaagacc tgaaatctta ggatttgaaa
     5341 gtataaaaac cttactatca aattctaatt cttcaagttc atcaatataa accttataag
     5401 cattttcttt taacttaact tctacttgca ttgaactact ctttttgcgt ttattctatc
     5461 acatttaatt aattatttat tctactggta tgaaaagttg gtaattttgt ctcattttat
     5521 aataatgcct atttaaattt gtacttaaat ttctgccaaa atctctattt agtaattctt
     5581 tttgaaaact cacaaattgt aacaaatctt cgcgatattg caaatttaaa agagggtttt
     5641 catcattttt attaataatt tgtatatttt tatcataaag cttagataaa cttctaaaat
     5701 actcctccat atctgtagta ttttgagaat ttggattata ataatataaa ataactccaa
     5761 aatcaagctg tttacttaaa tcagtaatga catttgcatt gttttcaagt tcactctcat
     5821 cagcacttaa aataatcgct tctttaagct catcaaaaga agcttcaccc actttcataa
     5881 taggaatttt taaatcaaaa aaagcttgtt tttctttctc aaaatttttt atatcagtta
     5941 caactaatcc tatatcatta ttttgcaacc atgtggaaat ttgtttaaaa tccgtgttga
     6001 aataatcaaa aaacacacct tctttatcct cagaaagttt ttttaatttt tcatacatta
     6061 cccctaattt aggattgata acatgtataa aaaatctttt tgcattgctt ttttgagtta
     6121 attttaaagt agtatcaagc actctttctt gcatattttg attcatattt ttcatatcaa
     6181 ttaaagcaaa aacattactt ccaaaaggca taggaaattg ccctgctttg cctcttatat
     6241 tatgaaaaat actttgtaaa acaacaggat ctccaacgat caaaatgcta tcatttggct
     6301 ctaaaacaaa agatggtttt acaaaataaa ttttagaatt tctataaata aggactatgc
     6361 gccacctttt ttgttgtatt gaacttatgt gcctataagc aaaaatagac cctgctggaa
     6421 tttttacttc cataatctcc ccaactccaa gtcctatata ctgagctgtt aaagcaatat
     6481 ctggtaaaaa atccataaat ctacggctta aagtcattct agcatcagct aaatttgcat
     6541 gagtatcatt aacacttaac ccccaaaaat ccattatttc tatttctaaa tttggattta
     6601 aagaacgcaa agcctcataa ctttttttag tttcaaattc atcttgcata taaataaaag
     6661 cctgtttaaa atccttactc ataatatttt caagacgcgc tgtgcttgta ggatcaaaat
     6721 aatgcaagtc aatatactca ctagaaatat ttaagttatt tttttcacta ttttgacaca
     6781 ctactgtaaa aaagtaacct aagccttttt caaaacaaag cctttctaag aaatgctttg
     6841 ctaaaatacc atctattata attaaaatat tattcatttt aaactccaaa aaggaaatta
     6901 taacaaatgg aatttaaatt aaagcataaa gatggaatgg caagggtttg tgaaatcact
     6961 accgcacaca gcactttttt aacccctgtt tttatgcctg ttggcacagt aggagcggtt
     7021 aaaagtcttg atgctaatga tatgaaaaat gagcttgatg caaaaattat tttagcaaat
     7081 acctatcaca tgtacttgcg tccaacttcc aaagtagtaa aagattttgg aggtttacat
     7141 ggatttacga aatttgatag aagtttttta accgatagtg gtggttttca agctttttct
     7201 ttaagtaaaa attccaaaca ttttaatgaa ggtatagaat ttaaaagtca cattgatgga
     7261 agtcgtcatc tttttactcc aaaaagtgtt ttagataccc aatatgattt taactctgat
     7321 attatgatga ttttagatga tttagtagcc ctacctgcaa ccaaagaaag ggttaaaatt
     7381 tctgttgatc gcactatact ttgggcaaaa gaagctattg cttatcataa aaatatgcaa
     7441 aataaaggta taggtatagg gcaaaatatt tttggtatta tccaaggtgg cacagattat
     7501 gaagaaagaa agcgttgtgc tttaagttta aacgaaatgc catttgatgg tttagctata
     7561 ggtgggctta gcgtgggcga agaaaacgcc ttgatgtacg aaacagtcca aaacttaaac
     7621 ccttatctag atgaaaatcg tccaagatat ttaatgggcg taggaacgcc tgaagattta
     7681 gtagaaaatg ttgagcgagg agtagatatg tttgactgtg tgatgccaac tagaaatgca
     7741 agaaatggaa catttttcac aagttttgga aaatttaata tcaaaaaagc agaatttatc
     7801 aacgatcatg aagttataga ttctacttgc tcatgttata cttgtcgtaa tttttcaagg
     7861 ggttatttaa accatctttt taaagctaaa gaacttactt tttttcgttt ggcaagtctg
     7921 cacaatctac attattatct tgaacttgca agaaagatgc gtgaagcaat tttgaacaat
     7981 tcttttacgc aatttaaaag aaatttttat cacttaagag gcaaataaaa tgctagagct
     8041 acacgaaaat ctaaaaaaaa tcctgcaagc aaagaattta gaaactttct atagcgaaat
     8101 ttatggacaa aaaatttttg tttacgtggg attaaattta gaaacttggc tttttaatga
     8161 tgaaaaaatt tataaacttc aaaatgaaga atttaagctt tctagcatag aagaattttc
     8221 aaattttatt aaatctattt tagaagattt taaagtacaa aatactcatt ttcaaaacct
     8281 tttagaacac aaagaaggta ttatcttaaa aggtggtttt gttaaaaatt tttacaaaaa
     8341 atcctttgtt ttaagacaaa aaattaacaa aaatctaaag caaattaatc ttctaagtga
     8401 agctttcaat cttttgctta gcgaacaagc acaatacaaa aaacatttaa aaattctaaa
     8461 tttatccatc agcatcttaa ataaaaatac caaagaacat ctaacaagaa ttgatactct
     8521 ttatacatta acaagtgcaa ttaaaaatga aaaaatgaat aaaagtattt atcttttaag
     8581 catactttct tctattttct tacctttaaa tttgatcgta ggattttttg gaatgaatac
     8641 taataatctt tttttcaaag atagccctta tggtacactt tatatttttt ctttgatttg
     8701 ctgtattttg attgtaggtt ttatatttta ttattcaaaa aagactaaag aatttgattt
     8761 agatgaaggt aaaaaagcta aaaaacaaac aaaataagca aaattttgct tattttaaga
     8821 atatttatat ataattttaa cttatttttg cgctcatagc tcagctggat agagcatttg
     8881 attgcggttc aaaaggccag aggttcgaat cctcttgagc gcaccatcac ttcttttctt
     8941 aaataatctt gaatcatctg aaataatcat ctaaagcatg at
//
LOCUS       DARGEY010000057         8931 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.057, whole genome shotgun sequence.
ACCESSION   DARGEY010000057 DARGEY010000000
VERSION     DARGEY010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8931)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8931)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8931
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.057"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            84..1148
                     /gene="mqnE"
                     /locus_tag="SF008_001134"
     CDS             84..1148
                     /gene="mqnE"
                     /locus_tag="SF008_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HEG8233403.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEVRKKICHGKVSSENWLKIHKLWHEKSKQSNATMLFGHIEER
                     HHRIDHMLRLRDLQDQTGGFNAFIPLVWQRDNSFIQTDKIMDSEEILKTIAISRLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTSLKTFIDMI
                     KTSNLIPVERDSLYNELKTY"
     gene            1158..2477
                     /locus_tag="SF008_001135"
     CDS             1158..2477
                     /locus_tag="SF008_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEG8233404.1"
                     /translation="MSFFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNTGMS
                     IEALITATALITIVASAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAV
                     FISSIIFLILSFTHFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFILGVLASSIIAWIFHLDNASFPVQIF
                     SWPNFSMENGLGAIFLQLDIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAAASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            2491..2934
                     /locus_tag="SF008_001136"
     CDS             2491..2934
                     /locus_tag="SF008_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HEG8233405.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKEDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDNTKKLDTIEIFNIPDLSKHKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKITTIFYKKTALLEPDFKVKEATEWVDFYWDINLD"
     gene            2979..3677
                     /locus_tag="SF008_001137"
     CDS             2979..3677
                     /locus_tag="SF008_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HEG8233406.1"
                     /translation="MRIKFISFILIFFAIFAFAKEQNLDDFEQEYQNYQVNDPLSGYN
                     KAMTSFNVALYDYGLRPVLKGYNTITPEFIRLGVRNFFDNLLVPLRFVGNILQFKFEE
                     AGEEFKRFTTNTIMGFGGLMDMASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
                     NLRDTLALPATWYASFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPF
                     LRDAYEQRRNELSK"
     gene            3687..4256
                     /locus_tag="SF008_001138"
     CDS             3687..4256
                     /locus_tag="SF008_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HEG8233407.1"
                     /translation="MKKIFLILALFFNAFALQLDEISSTMQKNIDASLKLLQDSKEDK
                     KQAADGIFKLFDSIIDYKLMAKLSLSKNYSKLNPKEQEKFTTAFEASLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSMVVDGEEKNIIFKFYNDNNNWLVYDVDVLGVSIV
                     QTYRSQFGDILANQGFDALLQKLESIVIE"
     gene            4256..6727
                     /locus_tag="SF008_001139"
     CDS             4256..6727
                     /locus_tag="SF008_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HEG8233408.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSFFAFKLSVDASAESLL
                     LEDDADLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDINRTKARNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNDLVEKRDLATDEKEKDQIRLAIKKHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMITYIKSDLVLYGVSLVFLLGFALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLNFQITVISSNYIALVLIITLSVVVHLITHFIENTQNHPK
                     ATVERIVLETLLAKANPSLYAIVTTMIGFFSLMLSNIEPIIKLGIMMSIGIGLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDPKKRRMIYGISVLAIILALIGIS
                     KLRVENSFVNYFKDGSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNTSNTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSILSLNSLLTLGKNINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSIRIVDSDPNLRRNEFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMMSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKTKFPNQHKEHILKQ"
     gene            complement(6758..7360)
                     /gene="rdgB"
                     /locus_tag="SF008_001140"
     CDS             complement(6758..7360)
                     /gene="rdgB"
                     /locus_tag="SF008_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HEG8233409.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIALSDDSGICVDVLEGNPGIYSARFSGKGDDKSNR
                     DKLVNEMIKKGFKQSKAHYVAAIAMVGLMGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILNKG"
     gene            7527..8822
                     /locus_tag="SF008_001141"
     CDS             7527..8822
                     /locus_tag="SF008_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8233410.1"
                     /translation="MLNYVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALTQMILQMPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYTMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSAKWGLSSLFD
                     LSAALSLLCIILLYTVVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKRGLAKQILLLGIVFF
                     ILSYLFFAFSNSIDFFIIAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLDTLNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     NFSTFGENLGVVDIYKNSKNLVVKFDSKLTSKEELEGKL"
     gene            8819..>8931
                     /locus_tag="SF008_001142"
     CDS             8819..>8931
                     /locus_tag="SF008_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEG8233411.1"
                     /translation="MKKILFLFCSFFLAFAKPSLEIPKLSKQAKQNFILENV"
BASE COUNT         3007 a         1337 c         1423 g         3164 t
ORIGIN      
        1 attttggctt tttctataaa ctctttttca gtaagcaaaa attataatgc tttatttaaa
       61 aacagcaaaa gagtaaaatt aaaatgaaaa atttaatcac caaactagaa aatgaagaaa
      121 gattaaacca agaagaagcc aatgcacttt gggatctaga tctttttacc ttaggcaaat
      181 acgctcacaa aaaacgcact aaacttcatg gaaaaaaagt ctattttaat atcaatcgcc
      241 atatcaaccc aactaatatc tgtgcagaca cctgtaaatt ttgcgccttt tcagcgcacc
      301 gaaaaaatcc taatccttat ttgatgactc atgaagaaat catgaaaatc gtcgatgaaa
      361 ctgtaaaacg agaaaccaaa gaagtgcata tcgtttcagc tcacaacaaa gatacaactt
      421 ggcaatggta tttagaaatt tttaaaatga taaaagaaaa atatcctaat cttcatgtaa
      481 aagctatgac tgctgctgaa attgattttt tacatcgtcg ttttaaaatg agttatgaag
      541 aagtgataga aaaaatgctt gaatacggcg ttgattccat gccaggcggt ggagctgaaa
      601 tttttgatga agaagtgcgt aagaaaattt gtcatggaaa agttagcagt gaaaattggc
      661 ttaaaattca taaactttgg catgaaaaaa gcaagcaaag taatgctacc atgctttttg
      721 gacatataga agaaagacat cacaggatcg atcatatgtt aagactgcgt gatcttcaag
      781 atcaaaccgg tggattcaat gcttttatcc ctctagtttg gcaaagggat aatagcttta
      841 tacaaactga taaaatcatg gatagtgaag aaattttaaa aaccattgcc atttctcgtt
      901 tagtgcttga taatatcaaa aatatcaaag cttactgggc aacaatgact ttaaatttag
      961 ccatggtagc acaagaattt ggagctaatg atttagacgg cactatagaa aaagaaagta
     1021 tacaaagtgc aggtggtgca aagtccgcca aaggcacaag tttaaaaact tttatcgata
     1081 tgataaaaac ttcaaatctt attcctgtag aacgcgatag tttatacaat gagctaaaaa
     1141 cctactaagg agaaaaaatg agctttttta aactcaaaga aaacaatacg agttttaaaa
     1201 ccgaagttat agcaggactt actacttttt tagctatggt ttacattatc cccgtaaatt
     1261 ctagcatagt aggaaataca ggaatgtcta tagaagcttt aatcaccgca acagctttaa
     1321 ttacaatagt tgcaagtgct tttaatgctt tttttgccaa tactcctgta gctatgagtg
     1381 taggaatggg tttaaatgct tattttacct ttgcggtttg tttaggtcaa aacatagctt
     1441 ggcaaagtgc cttaggagct gtttttattt caagtattat ttttctcata ctttctttta
     1501 cgcattttcg cctttgggta atccgcaata tcccaaaaga tttacgcctt gcaatttgtg
     1561 cgggcatagg ttgttttatt gcatttttag gcttaagtca aatgggtgtg ataatgcata
     1621 ataaagatac cttagtcagc ataggaaatt tcaaaagccc tcatgtgctt tttggaattt
     1681 ttactctagc tttaatcatc tttttttggg ctataaaact tcgcggagct tttattttgg
     1741 gggtattagc aagctctatt attgcttgga ttttccattt agacaatgca agttttcctg
     1801 tgcaaatctt ttcttggcca aattttagca tggaaaatgg tttaggagcc atctttttac
     1861 aacttgatat caaaagcgcc ttaaatatta ctatgatacc tataattctt acttttttta
     1921 tcactcaact ttttgatagc ataggaacta tcacaggtgt gggtgaaaga ggaaagattt
     1981 ttgatgatcc caaaaatgga gaaaaaaaac taagcaaaac cttaatggca gatgcaacag
     2041 gatcagcctt aggagctatg acaggcactt ctacagttac agcctttgtt gaaagcacta
     2101 caggggttga aagcggagga agaactgggc ttacagcttt agttgtagct atttgttttg
     2161 cttttacact ttttttactg ccacttttta aagccattcc tgcaaacgca atataccccg
     2221 tacttgtaat ggttggaatt ttaatgttta tggaagttaa aaatatagat tttaaagata
     2281 gtgctatagc tgcagcaagc ttttttacta tcatcatgat gccttttact tactccatca
     2341 ccacaggttt tgcttttggt tttctttctt atttacttgt aagaattttt aaacgcgaat
     2401 gggataaaat caatcttggc attatagttt taagtttatt atctttgggt aattttttac
     2461 ttatggcact acaataaata aggatatata atgatatttt actcctatga agaatttaaa
     2521 gaagatgtaa aaattcttgc taaagaaatt aaagaagatt ttaaccctga tgcactttta
     2581 gctatagcga gaggggggat gagtttagga cactctttag cagtggcttt aaaaacgcgt
     2641 caactttttg ctttaaactc aattcattac gataatacga aaaaacttga tactattgaa
     2701 atttttaaca ttcccgattt aagcaagcac aaaaaaattc tactcattga tgatatagta
     2761 gatagtggag aaagtttagc agaaataaaa aaagttttgc ttgaaaaatt tcctcatata
     2821 gaacttaaaa ttacaaccat tttttacaaa aaaaccgctc ttttagagcc tgattttaaa
     2881 gtaaaagaag ctactgaatg ggtggatttt tactgggata taaatcttga ttaaaaattt
     2941 gctataattt tacttttaaa atttttagga gtttttgctt gagaataaaa tttatatctt
     3001 ttattttaat tttttttgct atttttgctt ttgctaaaga acaaaattta gatgatttcg
     3061 aacaagaata ccaaaactat caagtaaacg atccactttc aggatataac aaagctatga
     3121 caagttttaa tgtggctttg tatgattatg gtttgcgtcc cgttcttaag ggctataaca
     3181 ctatcactcc tgaatttata agattagggg taagaaattt ctttgataat ttacttgttc
     3241 ctttgcgttt tgtaggcaat attttgcagt ttaaatttga agaagcggga gaagaattta
     3301 aaagatttac caccaatacc attatgggct ttggtggact tatggatatg gcatcaaaaa
     3361 tgggtcttaa aaaacatccc gcggacttag gaaccgtttt ggctcactgg ggtgtaggaa
     3421 gcggttttca tattgtctta cctatactcg gccctagtaa tcttagagat actcttgctt
     3481 tacctgcaac ttggtatgca agttttactg cttacattga tcctacttgg gcaagtatag
     3541 ctataagtgc ttatggattt ggtaatgaac ttagttttag acttgatgaa attgatgaaa
     3601 tttatcacaa cacgcctaat ttatatccat tcttgcgtga tgcttacgag caaagacgca
     3661 atgaacttag caaataaagg aaaataatga aaaaaatatt tttaatcttg gctttatttt
     3721 ttaatgcttt tgccttacag ctagatgaaa tttctagtac tatgcaaaaa aacattgatg
     3781 caagcttaaa acttttacaa gatagcaaag aagacaaaaa acaagctgct gatggaattt
     3841 ttaaactttt tgatagcata atagattata aactcatggc aaaactcagt ctttcgaaaa
     3901 attattctaa attaaatcca aaagaacaag aaaaatttac cacagccttt gaagcaagtc
     3961 ttaaaaaaag ttttaccgat aaactcagtc tttataaaga tcaggtttta aaggtcaaaa
     4021 atggtgagtt aaaaaatgaa aaacgctatt ttttaaccac ttctatggta gtagatgggg
     4081 aagaaaaaaa tatcattttc aaattttaca atgataataa caactggctt gtttatgatg
     4141 tggatgtttt aggtgtgagt atagtacaaa cttatagatc acaatttgga gatattttag
     4201 ccaaccaagg ctttgatgcc ctacttcaaa aacttgagag tattgtcata gaataatgtt
     4261 tgcaaagctt ttaaagtttt ttatttctcg tccaaaaagt actttttttg gaaccttgtt
     4321 tatatgcctg tttttaagct tttttgcttt taagcttagc gtagatgcaa gtgctgaaag
     4381 tttactttta gaagatgatg cagatttaaa aacttttaga gaaatttcaa aacattataa
     4441 aagtgataat tttttacttt tagccttcaa accctatgat gaaaaacctt tttcaaatga
     4501 aaatttagcc aaattaaaaa aacttcatga agaattagaa aaggcccctt tagtagagcg
     4561 cgtttttagc atcatcaatg cccctttgct tcaaagttca caaaatacgg atttaaaaga
     4621 actgttaaaa aatatcccaa acatagaaag ccaagatata aaccgcacaa aagcccgaaa
     4681 tgaaatttta aatagtccct tttataaaaa taatatcatc tcaaaagatg gaaaagtaac
     4741 agggcttatt atttacttaa agcctgatac agtttataat gatcttgtag aaaaacgcga
     4801 tcttgctacc gatgaaaaag aaaaagatca aattcgtctt gctataaaaa aacatcaaga
     4861 caagcaaaaa gttatcacga aacaaagtct agatactatt aaaagcatag ttcgaaatta
     4921 tgaaaaaaat aaagatacgc tctaccttgg tggcgtaagc atgatcgctg atgatatgat
     4981 aacttatata aaatctgatc ttgtactcta tggtgtttct cttgtatttt tactaggatt
     5041 tgcactttat tattttttcc gttcatggcg ctttgttttt ttacctcttt ttatttgttt
     5101 tataagctta agtgcagcta gtggagtttt tgcactttta aattttcaaa tcacagttat
     5161 ttcatcaaat tacattgctt tggttttaat tatcacctta agtgtagttg ttcatttgat
     5221 cacgcatttt atcgaaaata cccaaaatca tcccaaagct acagttgagc gcatagtgct
     5281 tgaaacctta ctagccaaag caaatcctag cctttatgcc attgttacaa cgatgatagg
     5341 atttttttct ttaatgcttt caaatatcga acctatcata aaacttggta ttatgatgag
     5401 tataggtata ggtttagctc ttatctttag ttatttattt ttagcaagta tcttagttct
     5461 tttaaaacca aaaaactatc ataaaaaaga gtttaaattt aatcttttag ccttttgtgc
     5521 taaaaccgct cttgatccta aaaagcgtcg catgatttat ggaatttcag ttcttgctat
     5581 aatcttagct ttaataggca tttcaaaact cagagttgaa aattcttttg tcaattattt
     5641 caaagatggc agtgaaatca aaaaaggact tttggttatt gataaaaatc taggtggaac
     5701 cttgccttta gaagtcatca ttcgttttcc aaataataaa aacgatcaaa atacaagcaa
     5761 tactcttgat agttttgaaa gcgaatttga aaatttagcc acacaagaaa cttattggtt
     5821 tgactctaaa aaaacacgca ttgcaaaaaa agttcatgaa tttttagaaa ataaagaatt
     5881 tgtaggctcg attttaagtc ttaatagtct tttaacccta gggaaaaata tcaacgatgg
     5941 aaaagagtta gatgattttg ctcttgcgtt tttaaatgag aatttacctg ctaaatttaa
     6001 acaagacttg ctttcacctt ttgtaagtat agagaataac gagttaagat ttagtatacg
     6061 tattgttgat tctgatccga atttaagacg taatgaattt ttaatagatc ttaaaaaaca
     6121 gctcaacgag cttgtaaaaa atgatggagt agaagttcaa atcacaggta taatggtact
     6181 ttataacaat atgctccaaa gtcttttttc atcgcaattt gatactctta tatttgtaat
     6241 tttagctatt tttatacttt ttatcattgt ttttagagat ttaaaatttt cagttgcggc
     6301 tatattggta aatgttattc ctttaagtgt ggtttttgct cttatggggc ttttaggtat
     6361 tcctttggat atgatgagta ttactatagc tgctattgct ataggtatag gcgttgatga
     6421 tgctatacat tatatttatc gttttaggga agaaattaaa aacaaaagcc tagaagaagc
     6481 cattatgatt tctcacctta gtataggttc ggcactttat tatactacca ttagcatagt
     6541 tttaggtttt agtgttatga tgagtagcaa ttttattcca acaatttatt ttggaatttt
     6601 aaccgttttt gtaatgattt tgcttttaag tggaagtttg ttcttattgc caagcttttt
     6661 aatcactatt tattctaaga aaaccaagtt tccaaaccaa cataaagagc atatattaaa
     6721 acaataatag ctatatattt taaaaaattt ttcattttta tcctttgttt aaaatcttta
     6781 aaatgatttt tgcaagctct aaggctttaa aacgatgaga gatgttattc ttctcatcca
     6841 cgctaagctg ggctaaggtt ttatcaaaac cctttggaat aaaaagacta tcataaccaa
     6901 aaccattttc acctttttct gtatctatta cttttccatg catggttcca tgcgtactaa
     6961 attcccccat caaacctacc atagcaatag cagcaacata atgcgcctta ctttgtttaa
     7021 aacctttttt tatcatttca ttgacaagtt tatcacggtt acttttatca tcgcccttac
     7081 cgctaaatcg agcagaataa attcctggat ttccttctaa aacatctaca caaatgccac
     7141 tatcatcact taaagcgata aaatcttttt tttgcttttc atccaaagca ttaaaaaccg
     7201 ctcttgcttt aatcaaggcg ttttctttaa aagtttttcc attttcttca atctcaaaag
     7261 gcattagaac ttcatcaaaa gcataaattt caaaatcttt taaaatttct ttaagttcta
     7321 aaactttatg tttattgctc gtagctagga taatcttcat aacaaaagct ccaaaataat
     7381 atcaaaaaca aaaatatgat tttataaaat ttatccttgt gcgtagcttt taaatatcaa
     7441 atgataaaac gatgttaatc aatgcttaat ccatttcata gtaaaattat cctaatttaa
     7501 atttcaaatt taataggaaa ttgataatgc taaattatgt cttaccctta tctttcatag
     7561 ttggaacaag attttttggg ctttttatag ttttgccagt tttaagtctt tatgctttaa
     7621 aacttgaagg tgctaatgaa tttttagtgg gacttttagt tggtgtttac gccttaaccc
     7681 aaatgatttt acaaatgcct tttgggattt taagtgataa aattggtcgt aaaaaaacca
     7741 tgctcattgg actgattatt tttataatag gctctttaat ctgctctttt gcggaaaata
     7801 tttacaccat gcttttaggg agaatgctcc aaggtgcagg agctattgga gcagtagcta
     7861 cggcaatgat aagtgatttt atcacagaag aaaatcgtgg taaagccatg gcggtaatgg
     7921 gttcttttat aggacttagt tttgcagcct ctatggtcat ttctcctcta atgagtgcaa
     7981 aatggggttt atctagcctt tttgatctta gtgcggcttt gtctctttta tgtataattt
     8041 tactttatac cgttgtacct aaagaaaata aaatcactca tgaaaatgaa aaaactcctt
     8101 tttttcatct tattaaacaa aaaaatttag cccttatgaa tcttactaat ttcatgcaaa
     8161 aaatgcttat gagtatagca tttttaagta ttcctattat tctagtaaaa catttaggct
     8221 ttgcttctga taaactttgg attgtttata gcgcttctat ggtagcaggt tttatcgcta
     8281 tgggctttgc tggaagttta ggcgaaaaaa gaggtttagc taaacaaatt ttactcttag
     8341 gaattgtttt tttcatactt tcttatcttt tttttgcttt tagtaattct attgattttt
     8401 ttatcatagc agttgtgatt ttttttatag gttttaattt acacgaacct attatgcaaa
     8461 gttgtgcatc aaaattttgt aaagttcatg aaaaaggtgc agcattaggg ttatttaatg
     8521 cttttggata tggtggaagt tttataggtg gtattatcgg agggatattt ttacatctag
     8581 ataccttaaa tcttttagct attattttag taattttagc tctaatttgg cttgtggcat
     8641 tatttttctt aaaaaatcca gctgatttta aaaaccttta tctaccttta gaaacgcctt
     8701 taaatttcag tacttttggt gaaaatttag gggttgtaga tatttataaa aactctaaaa
     8761 atcttgttgt taaatttgat agcaaactta caagtaaaga agaattagaa ggcaaattat
     8821 gaaaaaaata ttatttttat tctgttcttt ttttctagct tttgcaaaac caagtctaga
     8881 gatacccaag ctctcaaaac aagcaaaaca aaactttatt ttagaaaatg t
//
LOCUS       DARGEY010000058         8526 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.058, whole genome shotgun sequence.
ACCESSION   DARGEY010000058 DARGEY010000000
VERSION     DARGEY010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8526)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8526)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8526
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.058"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            48..620
                     /locus_tag="SF008_001143"
     CDS             48..620
                     /locus_tag="SF008_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HEG8233412.1"
                     /translation="MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISN
                     VKGNFKDYSAVIDFDPASAEFKKLDVTIKIASVNTENQTRDNHLQQDDFFKAKKYPDM
                     TFTMKKYEKIDNEKGKMTGTLTIAGVSKDIVLDAEIGGVAKGKDGKEKIGFSLNGKIK
                     RSDFKFATSTSTITLSDDINLNIEVEANEK"
     gene            complement(625..1581)
                     /locus_tag="SF008_001144"
     CDS             complement(625..1581)
                     /locus_tag="SF008_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233413.1"
                     /translation="MFLLDFLISLSFIFEISALVLSFYFKNSRIFFLTLVLLGAKLPY
                     FYTSFFQANLFVALFLPMIFTLFCVGKHHVLILNKKNIASITTLIFIGILSIILPRNT
                     TFNSAGLEFHFIALDFFKPVSELGFLFFLVGLILIFIKTFKTKEYYLLIAFFTAYFQF
                     LFQEGAGIRYFEFASLVFCFYLLNHAYRLAFFDTLTKLPNEKSLTRFTKGKNNYIIAL
                     LHFNELKDTKESYTKLILKQIAKILKRFRAKIFIVENDFILIFNDKNQALNHLAFLES
                     TLKNTEFNLENENFKPDFKLIWQESEENLDKNLQSLRARLLD"
     gene            complement(1642..1851)
                     /locus_tag="SF008_001145"
     CDS             complement(1642..1851)
                     /locus_tag="SF008_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEG8233414.1"
                     /translation="MTKKSKRDMAYELDIDVSTLYNWRKYKPNLYRIVMLGFKFDELL
                     ENSKKTHEELLHIEQTIQDEIAKFK"
     gene            2020..2247
                     /locus_tag="SF008_001146"
     CDS             2020..2247
                     /locus_tag="SF008_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superinfection immunity protein"
                     /protein_id="HEG8233415.1"
                     /translation="MEGASGGSIFVTILLFVLYMLPAIIGLSRKHSNWLIISLLNLFF
                     GWTIIVWLVCLIWSFTGSFKQTIIIKEKNEK"
     gene            2256..2888
                     /locus_tag="SF008_001147"
     CDS             2256..2888
                     /locus_tag="SF008_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system YwqK family antitoxin"
                     /protein_id="HEG8233416.1"
                     /translation="MTKFLSICSLIAMLLSGCGSDFPGQPSDVARVQQNKYPNGNLKE
                     EIPYNKDSRIHGLKRAFYDNGQLRAEENYKNGKKDGISREYSRNGQLLEEVHFKDNRG
                     YGDFASYYENGNMRAKGKLLGYNEDGMPEFEGNYKEYYENGTLMCDYNFDNKGKFDGV
                     QKRYDENGALEDEENYKNGLKNGVFREYKKGEIVREEEYKNGILVAKPKN"
     gene            2901..3317
                     /locus_tag="SF008_001148"
     CDS             2901..3317
                     /locus_tag="SF008_001148"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233417.1"
                     /translation="MFKKVILFFLMGFALLQANSLDKCDNTAVVSNLKEKIPSEIFKN
                     LYELSGLKAQGIDYEDYAKGLKEIAKHDGMVNYTDMIEINSISNFDLNFDSCMATINA
                     ALKGEQRKGLWSVVYKVSNINQVKITDITYINGDFQ"
     gene            3447..5024
                     /locus_tag="SF008_001149"
     CDS             3447..5024
                     /locus_tag="SF008_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEG8233418.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLFLGADALFLDEPTNNLDLEAISWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEIKGIGKAYDKQLFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIAHAISPDSGSIHLGATIELGYFPQDTSNL
                     ICENLKLYEWLMSEKFKDLDESRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGK
                     LTDFRGTYQEFLGENDG"
     gene            5014..5349
                     /locus_tag="SF008_001150"
     CDS             5014..5349
                     /locus_tag="SF008_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233419.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            5424..5807
                     /locus_tag="SF008_001151"
     CDS             5424..5807
                     /locus_tag="SF008_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233420.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQIEDYSSSGDSDFMDMLNK
                     ADEKSSGDALNSSSSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLAQQGANEQSKNNTLLNDLLNAI"
     gene            complement(5851..6435)
                     /locus_tag="SF008_001152"
     CDS             complement(5851..6435)
                     /locus_tag="SF008_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEG8233421.1"
                     /translation="MQTIDQIFQTQIDIKKSIFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIVEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLVRAYSDAANAVINNSSLLSFELKKNITIAIDLKNLNRFEHFLKTYSFNFTKDF
                     KDCKAILHIKLNEKEEQEFEIFCKNFAPFEIEKL"
     gene            6562..7788
                     /locus_tag="SF008_001153"
     CDS             6562..7788
                     /locus_tag="SF008_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233422.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGISTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     SLLLFVLLPGTVASALLVNAASLVIFLTLAILCAYEYEKKWLFYILLIIVLFVDKSFN
                     ILFLTFFFFGIYKRNAILFTLSLVLFGASISFYGFDTGGRPRGYFLDTLGIFAACFSP
                     LVFVYFFYTIYRLTFQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVICTPLL
                     IKTLMQSYRVRLPVFRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNPNRHFANNY
                     HFAKELALELKKQDVLELATAPSLQKRLRFYGIKNSNKFYLKALKQGDKHDMDKKIVK
                     VKLGKYEKVYQILNYD"
     gene            7781..8519
                     /locus_tag="SF008_001154"
                     /pseudo
     CDS             7781..8519
                     /locus_tag="SF008_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
BASE COUNT         3092 a          986 c         1434 g         3014 t
ORIGIN      
        1 atctaataaa atttttatat tgaaaattac tataaaaaag gaaaaaaatg aaaaaagttt
       61 tattgagttc attggttgcg gtgtctttgt taagcacagg tttgtttgct aaagaatata
      121 ctttagataa agcacataca gatgtaggtt ttaaaatcaa acatttacaa attagcaatg
      181 taaaaggaaa tttcaaagat tattctgcgg tgattgattt tgatcctgcg agtgctgaat
      241 ttaaaaagct tgatgtaact ataaaaatcg catctgtaaa tacagaaaat caaacaagag
      301 ataatcactt acaacaagat gattttttca aagcaaaaaa atatcctgat atgactttta
      361 caatgaaaaa atatgaaaaa atcgataatg aaaaaggcaa aatgacagga actttaacta
      421 tagctggagt ttctaaagat atcgttttag atgctgaaat cggcggtgta gctaaaggca
      481 aagatggaaa agaaaaaata ggattttctt taaatggaaa aatcaaacgc tctgatttta
      541 aatttgcgac aagtacttca actattactt taagtgatga tattaattta aatatcgaag
      601 ttgaagcgaa cgaaaaataa ttttttagtc taagagtctt gctcttagac tttgtaaatt
      661 tttatccaaa ttttcttcac tttcttgcca aatcaattta aaatccggtt taaaattttc
      721 attttctaaa ttaaattccg tgtttttcaa ggtggattct aaaaaagcaa gatgatttaa
      781 agcttgattt ttatcattaa aaattaaaat aaaatcattt tctacgataa aaatttttgc
      841 tctaaagcgt tttaaaattt ttgcaatttg ttttaaaatg agtttggtat agctttcttt
      901 ggtatctttt agttcattaa aatgaagcaa ggcaatgata tagttgtttt ttccttttgt
      961 aaagcgtgta aggctttttt cattgggtag ctttgttaag gtgtcaaaaa aagctaacct
     1021 ataagcgtga tttaaaagat aaaaacaaaa aaccaaactt gcaaattcaa aatatcttat
     1081 tcctgctcct tcttggaata aaaattgaaa atacgcagta aaaaatgcga taagaagata
     1141 atattcttta gttttaaagg ttttgataaa aatgagtatt aagccgacta aaaaaaataa
     1201 aaatcctaat tcactcacag gtttaaaaaa atctaatgca ataaaatgaa attctaaacc
     1261 agcactatta aaagtagtat ttctaggtaa aatgatactt aaaatgccta taaaaataag
     1321 agttgtaatt gaagcgatat tttttttatt taaaattaaa acatgatgtt ttccaacgca
     1381 aaatagagta aaaatcatag gtaaaaataa agctacaaat aaattagctt gaaaaaaact
     1441 tgtataaaaa taaggcaact tagctcctaa tagcactaaa gtcaaaaaga aaattcttga
     1501 atttttaaag taaaaggata atacaagtgc tgaaatttca aaaataaaac tcaatgatat
     1561 taaaaaatct aataaaaaca tttcaaatcc ttgattttaa taaaagtgat aattgtatag
     1621 aaaaaagctt aaaagtggat tttatttaaa tttagcaatc tcatcttgta tagtttgttc
     1681 tatatgaagc aattcttcat gagttttttt gctattttct aaaagttcat caaatttaaa
     1741 gccaagcata acaatacgat ataaattggg tttatatttt ctccaattat ataaagtgct
     1801 aacatcaatg tctagttcat atgccatatc acgcttgctc ttttttgtca ttttttacct
     1861 taaaaattta gcctttaaaa aattttacat taaaatttct ttattaaaaa cacttgaaat
     1921 attcaatctt ttatataaaa tatatttaat atttcaatat taattaagtt atagtatgga
     1981 ataatagttt ttataaaatt tttatttaag gagaattaca tggaaggtgc aagtggcggg
     2041 tctatttttg taacaatatt attgtttgta ttatacatgt tgcccgctat tattggtttg
     2101 agcagaaagc attctaattg gctgataatt tctttgctaa atttgttttt tggttggact
     2161 attattgttt ggcttgtttg tttaatatgg tcttttacgg gaagttttaa gcaaactatt
     2221 attattaaag aaaaaaatga gaaataggag aaaaaatgac aaaattttta agcatttgta
     2281 gtttaattgc gatgttgtta agtggttgtg gaagtgattt tcctggacaa cctagcgatg
     2341 tggctagagt tcagcaaaac aaatatccaa atggaaattt aaaagaagaa attccctata
     2401 ataaagattc aagaatacat gggttaaaaa gagcttttta tgacaatggt cagctaagag
     2461 ctgaagaaaa ttataaaaat ggaaaaaaag atggaattag cagggaatat tctagaaatg
     2521 ggcaattact tgaggaggtg cattttaaag ataatcgcgg atatggtgat tttgcaagct
     2581 attatgagaa tggaaatatg agagcaaagg gaaaactact tggctataat gaagatggta
     2641 tgccagaatt tgaaggtaat tacaaggaat attatgaaaa tggaacttta atgtgtgatt
     2701 ataattttga taataaaggt aaatttgatg gagtacaaaa gcgttatgat gaaaatggcg
     2761 ccttagaaga cgaagaaaat tataaaaacg gacttaaaaa tggagtcttt agagaatata
     2821 aaaaagggga gattgtaaga gaagaagaat ataaaaatgg tattttagta gcaaaaccta
     2881 aaaattagag gagtttagat atgtttaaaa aagtaatttt atttttctta atggggtttg
     2941 ccttgcttca ggccaactca ttagacaaat gtgataatac ggcagttgtt tcaaatctta
     3001 aagaaaaaat tcctagtgaa atttttaaaa atctttatga attatccgga cttaaagccc
     3061 aagggattga ttatgaagat tatgcaaaag gcctcaaaga aatagccaag catgatggaa
     3121 tggtaaatta cactgatatg atcgaaatta attccatttc aaattttgat cttaattttg
     3181 attcttgtat ggctacgatt aatgctgcat taaaagggga acagagaaaa ggtctttgga
     3241 gtgttgttta taaggtttct aacataaatc aagtgaaaat tacagatata acttatatca
     3301 atggagattt ccaataatat ttttattaaa gtaagtcaat agaattaatt tcatgactta
     3361 ctaatatttt atacttaatt aatttcaagt ctttttttga tacaatttct taaaaatttt
     3421 tataagtaaa aaatttaagg aaaatcatgg ttgaagtaaa aaatcttact atgcgttttg
     3481 caaatcagct tttatttgaa aatgttaatt taaaacttgt tcgaggacaa agatacggac
     3541 ttatcggtgc taatggtgcg ggaaaatcga cttttttaaa aattctttca ggagaaattg
     3601 agtcaagtag tggtgaaata gtatttgatg aaggcttgaa aatcgcagtt ttaggacagg
     3661 atcaatttgc ttttgaaaac tacaccatca aagatgcagt gatgtgtgca aataagcgtt
     3721 tatatgaggc cttaaaagaa aaagaaaagc tttatatgag cgaggaattt actgatgaga
     3781 tcaatgagcg tttaggtgag cttgagataa taacggctga agaagatcca aattatgatt
     3841 gtgaaacacg ttgtgaaaaa attttaagtt ctttaaagat taaagatttc gatgctttaa
     3901 tgagcacctt acaaagtgcg gataaattta aagttttgtt agctcaagtt ttgtttttag
     3961 gtgccgatgc gcttttttta gatgagccta caaataacct tgatttagag gcgatttctt
     4021 ggcttgaaaa tgaactttta agacatgaag gaactttggt tgtcatctct catgataggc
     4081 attttttaaa taaaatttgc acaagaattt tagatgtgga ttttaaacaa attcgtgatt
     4141 ttgcgggaaa ttatgatgat tggtatatgg cttcaacgct tttggcaaaa caagctgagc
     4201 ttaaacgcga taaaacctta aaagaaagag aagaattaga aaatttcatt cgccgtttta
     4261 gtgcaaatgc ttctaaggca aaacaagcca caagccgtgc taaggcgctt gaaaaactag
     4321 agcttgaaga gattaaaatt tcaagccgta gagatcctag tatagtattt agaaccaatc
     4381 gtgaaatagg taatgaagtt ttagaaatta aaggtatagg taaggcttat gataaacaat
     4441 tgttttcaaa tttggagcta aaaatagaaa aaaatgataa aatcgctttg attggggcaa
     4501 atggtgtggg taaaagtact ttagcaaaaa tcatcgccca tgctataagt ccagatagtg
     4561 gatctataca tcttggggca actatagaac ttggatattt tcctcaagat acaagtaatt
     4621 taatttgtga aaatttgaaa ctttatgaat ggctgatgag tgaaaaattt aaagatctag
     4681 atgaaagccg caagtgttta ggtagaatgc tttttagtgg cagcgatcaa gaaaaaatgg
     4741 cagcaagttt aagtgggggt gaaaaacatc gtttaatgct ttctcgttta atgctagagc
     4801 gtccgaattt cttgctttta gacgaacctg ataaccattt agatcttgaa agtattattg
     4861 cattaggtga agctttgtat aatttcaaag gtgtagtgct ttgtatcagc cacgataggg
     4921 agttagtttc tgcttttgct aatagaattt ggcatttaga aaatggtaag cttacagatt
     4981 ttcgtggaac ttatcaagaa tttttaggag aaaatgatgg ctaaatttag aattcaatac
     5041 agcgcaggtt ttgggcatta tacacaaaat cacaagggtt ttgggcctac gatttatata
     5101 gaagaagtcg tagagtttga taatggcaag gattattttg actatataga tttttataaa
     5161 acttattcaa agagcgatga tacttatttt catatcagtt ttttagaaga tagacctcta
     5221 agcgataaag aaatcaccat tcgtaatgaa taccgcaaaa tgcgtgatga aaactgtaaa
     5281 aaagccaagg aagaatttat agccaataat gagcttgatg tggagcattt gcctactcac
     5341 catgattaaa aaacattgat ttttacataa aaaggaacgc tttttgcttg tatagttttt
     5401 gcatattttg aaaggagaaa actatgcagg taaattatag aacgattagc tcgtatgaat
     5461 acgatgctat tagtggtcag tataaacagg tggataaaca gattgaagat tattcttcat
     5521 ctggagattc tgattttatg gatatgttaa ataaggcgga tgagaagtca agcggagatg
     5581 ctttaaattc tagcagcagt tttcaaagta atgcgcaaaa ctcaaattca aatttaagta
     5641 attatgctca aatgtcaaat gtttacgctt atcgttttag acaaaatgaa ggcgagttgt
     5701 ctatgagagc tcaaagtgct agcgttcaca atgatcttgc gcaacaaggt gcaaatgaac
     5761 aaagtaagaa taatactttg ttaaatgatt tattgaacgc aatttaatca aaagctccat
     5821 tttggagctt ttgtatttac ttgcaagaat ttataatttc tctatttcaa aaggtgcaaa
     5881 atttttacaa aaaatttcaa attcttgctc ctctttttca tttaatttga tatgtaatat
     5941 agctttgcaa tccttaaaat cttttgtgaa attaaaagaa taagttttta aaaaatgttc
     6001 aaaacgattt aaatttttta aatcaatagc aatggttata ttttttttca attcaaatga
     6061 aagtaaagaa gaattattga tcacggcatt tgccgcatcg ctataggctc ttacaagtcc
     6121 ccctgtacca agttttatac caccaaaata tcttacagtg attaaagccg cattgataag
     6181 atcatagccc cttagaacat ttaaagttgg cattccagaa gttcctttag gctctccatc
     6241 atcgctttta tcttctacaa tttgattaaa atcatttaaa acacgataag catagacaaa
     6301 atgaacagct tttggatgtt ctttttttag cgtttctatt aaaaatttaa aatctttaaa
     6361 agggcaaaga aaagataaga aaatagattt tttaatatcg atttgtgttt gaaaaatttg
     6421 atcaatagtt tgcatttttg ccttttttgt ttaaaattat acttataaaa actaaaatca
     6481 atttgatgtt aatttttaag atatttgata tttatatgat ttgcattgat attttaagtt
     6541 taattttgta aaattttcat tatggaaaaa atcaaaaatt ataaacttat catcatttta
     6601 cttagtcttg atttgttggc tttgctttat ggaatttcaa cactgagtat tagtgctgat
     6661 gaagctgata tttattttgg tgagcagggt aaatcactta ttttttccca tagtttgctt
     6721 tattatatat ctcattttgg aacttttatt tttgggcaaa atgattttgg tttaaggctt
     6781 ccttttttat tttttcattt tttaagttgt ttgcttttgt atttgctagc tttaaaatat
     6841 actaaaacta aaattgatgc ttttttttct ttattgttat ttgttttatt gccgggtact
     6901 gttgcaagtg ctttactggt taatgccgca tctttggtga tttttttaac ccttgctata
     6961 ttatgtgctt acgaatatga aaaaaaatgg cttttttata tattattgat tatagtatta
     7021 tttgttgata aatcttttaa tattttattt ttaacttttt tcttttttgg gatttataaa
     7081 agaaatgcta ttttatttac cttatctctt gttttgtttg gagcgagtat cagtttttat
     7141 ggttttgata caggtggtcg tccaagaggt tattttttag ataccttagg aatttttgct
     7201 gcatgttttt ctcctttggt ttttgtgtat tttttttata ctatttatcg tttgactttt
     7261 caaaaatata aaaatttatt atggttttta atgagcgtaa catttgtatt ttgtttgttg
     7321 ctttctttaa gacaaaaact ttttttagat gattttttgc ctttttgtgt tatttgcact
     7381 cctttgctta taaaaacttt aatgcaaagt tatagggtga gattaccagt ttttcgatta
     7441 aggtataaaa tctttataga atgttctata atttttttga tattttgtta ctttttaatc
     7501 gtcgctaatc aattattgta ttattttata aacaatccaa atcgtcattt tgccaataat
     7561 tatcattttg ctaaagaatt ggcactagaa ttaaaaaaac aagatgtttt agaacttgca
     7621 acagccccaa gtttgcaaaa aagattgcga ttttatggaa taaaaaatag caataagttt
     7681 tatttaaaag ctttaaaaca aggcgataag catgatatgg acaaaaaaat tgttaaagta
     7741 aaacttggaa aatatgaaaa agtatatcag attttaaact atgattaaag ctttcagttt
     7801 gttggaattt gtgtttataa ttctcatttt aggtatagtt tttaatttag gcagtcttta
     7861 cttaaaaaaa agacaatcta ctagaaggtg caatacaaat tcttaatgat atccaatata
     7921 cccaaagttt agccatgatg caagaaggca taagagttga tgagttggct atcgcaaaaa
     7981 gagagtggtt taaaagtaaa tggcagattt attttataaa atcagctgcc acaggttatg
     8041 atcaaacata tactattttc ttggataaaa atggcgatgg aaatgctaat ttaggtaaaa
     8101 ctgaaatcaa tatagataga gaaattgctg ttgatgtaat caatcataac aaattaatga
     8161 attcaggtca aagtggagtt attagtaaag atgatgaaaa aactacacaa agatttaatc
     8221 ttacaaaaag attcggaata gaaaaggttg aattcaaagg atcttgttca ggatttacta
     8281 gattagtatt tgatgaaatg ggcagagtgt attctccgtt aaaaaatgcc aattatgcat
     8341 atgaaaaaac tttagcaaag aataattcag attgcattat acgtttgtta tcaaaaaagc
     8401 atgctctttg tatcgttata gatacgctta gcggttatgc ttatattcca gattttaaaa
     8461 cacttaaaag tcaatttgtt aatataaaaa ataaaaatta cgagtgctct aaaatatagc
     8521 ccccat
//
LOCUS       DARGEY010000059         8299 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.059, whole genome shotgun sequence.
ACCESSION   DARGEY010000059 DARGEY010000000
VERSION     DARGEY010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8299)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8299)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8299
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.059"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..264
                     /locus_tag="SF008_001155"
     CDS             <1..264
                     /locus_tag="SF008_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HEG8233423.1"
                     /translation="LHDLGAKKIEHWDARNENRVNRKPIPCDTECIVMLTSFLNHNTM
                     KKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLNKEFSCYKG"
     gene            267..962
                     /locus_tag="SF008_001156"
     CDS             267..962
                     /locus_tag="SF008_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233424.1"
                     /translation="MLFGFDDKREFIPQIYRYLNNQELMLTFLTQYNASVDSALKIPL
                     SYAKNTKSLKMIFGNFLHDIMHVSFGKIQNINIKLNAYAFYFQKRKSLIFNTKISKNV
                     DFLRLLRIYLYGICFDVQILFSSYVYDKISFQNNEKNIDQDGDLIIIDKKFAILPLCK
                     EINTYNLKIENEIHELLNLIKENNFEKFYIVCPRNKNFTHFIEIKHFLCDLNKTMLKL
                     VPYKISNQIIRRK"
     gene            962..1453
                     /gene="fldA"
                     /locus_tag="SF008_001157"
     CDS             962..1453
                     /gene="fldA"
                     /locus_tag="SF008_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HEG8233425.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIASKLGISDVFNISDIDAAKMNSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWIEQIKP
                     YFA"
     gene            complement(1499..2029)
                     /locus_tag="SF008_001158"
     CDS             complement(1499..2029)
                     /locus_tag="SF008_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233426.1"
                     /translation="MSKITLILSFFITLFMSACTNTTFTQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLQTTLDRDLALKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLKNKIINQIVSFFYF"
     gene            complement(2035..2745)
                     /locus_tag="SF008_001159"
     CDS             complement(2035..2745)
                     /locus_tag="SF008_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEG8233427.1"
                     /translation="MKKLSLILACSASLFAASNSEISDFYSKSIKAQFPNATVSVSNR
                     QKVGNTGFESVIVSVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEA
                     RENFTKNAKAVAQKETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDNELKNYQVNY
                     ILTPVHGKSAFEKSALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDAELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            complement(2794..4599)
                     /gene="selB"
                     /locus_tag="SF008_001160"
     CDS             complement(2794..4599)
                     /gene="selB"
                     /locus_tag="SF008_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HEG8233428.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSVCLFIVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCENIEQKSVEILEELKNLDYPILKVFHTSIKNNQGIEELKNY
                     LYTIENKENYEELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQKELIV
                     KNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGYFKAFKECDALVKAKNLQ
                     NSKMIFCVGSRQIECKINILKKLENDEFFVHFSFDKNVFLSFDEAFILLQNNRVIGGG
                     KVLNPLSEPLKKEQKNKFLMFLKNKDFKAAFSFLKDAHKYGFGLLSSYQRFKLSHQKA
                     LKLAKELNQVFVDEKNLNVYHLQSLEEIKNFIKFILEKNPYAMLSAHSLALRITWASE
                     NFCELGLKEMSNLLDFQNGIYFKKGIDFEKLQEKNNNQLYEILKKQGIKPEAPYNLYD
                     FLELDRKSGDNILKKLTQKGLVVRLSHNLFIEKQALEKLMQECLNLLKNQSLDVQSMK
                     EYFNLSRKYAIAYLEYLDKFPQVSKEAEKRFLTNI"
     gene            complement(4596..5918)
                     /locus_tag="SF008_001161"
     CDS             complement(4596..5918)
                     /locus_tag="SF008_001161"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HEG8233429.1"
                     /translation="MNKFRTFPQINTLIEDESLKSYPFYIKAFFCKKVVAKLKENFSQ
                     DEISKDKLLLEIKKEIKTFYRKDLQSVINASGVVIHTNLGRSVIHEELYEACKDIICN
                     YSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSLCYDKEVIS
                     SRGELIEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYEQAISENTALILKTHKSNF
                     ALMGFHSEANIKDLHELAKEKGLLSYYDLGSGWCENLNEKLIKNEPKIKKLVQECDIL
                     SFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYLQKDYE
                     KIITLKLLNDDLSFIEEKALRVQKELKFQTQLKKSKSLVGGGSMPDKSLDTYILTFQG
                     DALKLQTRFRKENIIGRIENDEFVLDFRTIRENELQKLILTINQMENL"
     gene            5996..7657
                     /locus_tag="SF008_001162"
     CDS             5996..7657
                     /locus_tag="SF008_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG8233430.1"
                     /translation="MQDFVYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYA
                     PEINFYLKNSQDEILEQSKNVLTLYEARASVYDLGLDLEQSKEVQNRLILADSDTQTV
                     EFLKEHGFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAENLSVVRK
                     DFTRQSGCYNLLNFENLEALLEFLQSKSPKYPYKTYISYNASVCQYHERRSEHCAKCA
                     EICPTVAILKDDEKKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKD
                     KKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQNSGANLVFYTDFVS
                     RGSNEAIMLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRE
                     NFAKRMQEMIKNEDFGSIESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQEN
                     ALKFNASLCTTCGYCELSCAEKDTLKLFRSGMEFRASYFEYQTMAKDELFSCIECGKE
                     FATKKAVEKIANLMKPKFGNDEDKIKTLYCCADCKAKVMIKAMIN"
     gene            complement(7650..8267)
                     /locus_tag="SF008_001163"
     CDS             complement(7650..8267)
                     /locus_tag="SF008_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEG8233431.1"
                     /translation="MIYLLDGNAFFPLFLNLFNTPVKENLLIIGIGYDNNLAFDTQKR
                     TKDYTPTTNLNKQGGGSKEFRNFLITQLIPYINKMYPIDFSHQILFGHSFGGLFAIDT
                     LLYDSKIFSHYFIISPSLWWDNSEFLPNIIKLQTCPKIYIGLGSLETNSSIIKGVAKL
                     NAQKLSEKISKETNCKTHFKLFKNETHGSVISKAMLWMKKLLDLN"
BASE COUNT         2803 a         1087 c         1251 g         3158 t
ORIGIN      
        1 ttacatgatt taggtgctaa aaaaatagaa cactgggatg cgcgtaatga aaatagagtt
       61 aatcgcaagc cgattccttg tgatacagaa tgtatagtaa tgttaacaag ctttttaaat
      121 cataatacta tgaaaaaaat caaaaatgaa gctaaaaagc gtaaaattcc attagtttgt
      181 gcaaaaagaa gtgtaagttg tgtgtattgt gaatattgta aaatttttaa tcttaataaa
      241 gaattttctt gctataaagg ttaaagatgt tatttggatt tgatgataag cgagaattta
      301 taccgcaaat ttatcgctat ttaaacaatc aagagcttat gttgactttt ttaactcaat
      361 ataatgcgag cgttgatagc gctctaaaaa ttcctctttc atatgcaaaa aataccaaga
      421 gtttaaaaat gatatttgga aattttttac atgatataat gcatgtttca tttggtaaga
      481 ttcaaaatat aaatatcaag cttaatgcat acgcttttta ctttcaaaaa agaaaaagct
      541 tgatttttaa tactaaaata tctaagaatg tcgatttttt aagactttta agaatttatc
      601 tttatggcat ttgttttgat gtgcaaattt tatttagctc ttatgtttat gataagattt
      661 cttttcaaaa taatgaaaaa aatatagatc aagatggtga tcttattata atagataaga
      721 aatttgcaat tttaccactt tgcaaagaga ttaatacata taatttaaaa attgaaaatg
      781 aaattcatga attattgaat ttaataaaag aaaacaattt tgaaaaattt tatattgttt
      841 gtccgcgtaa caaaaatttc acacatttta ttgaaataaa acattttttg tgtgatttaa
      901 acaaaactat gttaaaatta gttccgtata aaatatcaaa tcaaattata aggagaaaat
      961 aatgtcagta gcagtaatct atggtagtgc tatgggaaat acagaaggag cggctaatac
     1021 aattgcttca aaacttggaa ttagcgatgt ttttaatatc tcagatattg atgcggctaa
     1081 aatgaattct tacgataaat taatttgtgg aacttcaact tggggaagtg gtgatttaca
     1141 agatgattgg gatggttttg atttttcagg gcttagtctc ggtggaaaaa ccgtagctgt
     1201 atttggtatg ggtgatagtg aaagttattc tgatactttt tgtggtggca tgggtaaatt
     1261 agctcaaaat ttaaaagatg caggcgcaaa tttggtagga gaagtttcaa ctgatggtta
     1321 tacatttgaa gcaagtgatg cggttgtaga tggtaaattt gttggacttg ctcttgacaa
     1381 tgataatcaa gaagatcaaa ctgaatcaag aattgatgct tggatagaac aaatcaaacc
     1441 ttattttgct taataattct taaaatcaag agtttttata ctcttgattg tctttttctt
     1501 aaaaataaaa aaaactcact atttgattta taattttatt ttttaaagat aattgacagc
     1561 gttctttatt tccaagataa gctgttcttg caagaagact tgttttttga gaattgtgat
     1621 ttttagagtt gatttgtaaa ttaacttgca tagtatagta gttttctacc atccattctc
     1681 catcgctttc caaaggatca aaatcataaa aaaatcttgc tgaagttgtg attttttgag
     1741 cataagaatg ctttttcata tctacaagat tgattaaaat ttcataatct gcattctctt
     1801 ttacttcttt taagcctaaa tttttaagtt ttaaagccaa atctctatct agagtagttt
     1861 gaagttgact aggattttga aaggaaattt taaaactttg ttgtttttgt gatctgataa
     1921 aaatgccttc attgcttgtt tgaataaagc tttgtgtgaa agttgtattg gtgcaagcac
     1981 tcataaagag tgttataaaa aagcttaaaa ttaaagtaat tttagacatt aggtttattt
     2041 aataatagtt ggagtagcgc taagacctaa tgagcgatat ttttcatata aggaaaaaac
     2101 ttcttttaat tctgcatcgc ttacttttgg ataatttttg atatttgcat catagtattt
     2161 gtttaaaatt gcgatttttt ctttatcatt ttttgctttt tttgcttctt tgtagattag
     2221 agcggatttt tcaaaagcag attttccatg tactggagtt aaaatataat taacttgata
     2281 gtttttaagt tcattatcaa tttgagctaa atgttctcta caataagggc attcaggatc
     2341 tgaaaaaaca taaattgcgg gtttattttt atctcctaaa gctattacca tggtttcttt
     2401 ttgtgctaca gctttagcat tttttgtaaa attttctctt gcttcttgaa attttttcat
     2461 ttcatattct tgagcataag aaattcccgt tttcaagtcg ataagatcag gggtaataag
     2521 actatctttt gtaaaaagaa tgttttcttg tttttgtcca tttaattcaa cgcttacaat
     2581 aacactttca aaacccgtat taccaacctt ttgacgattt gatacactaa cggtagcatt
     2641 tggaaattgt gctttaatgc tttttgaata aaaatcacta atttctgaat tacttgcagc
     2701 aaacaaagat gctgaacagg caagaattaa acttaatttt ttcatagttt ataaatcctt
     2761 taaataaatt atgtttaatt ctataatgat tttctaaatg tttgttaaaa atcttttttc
     2821 agcttctttg cttacttgag gaaatttgtc taagtattct aaataagcaa tagcatattt
     2881 tcttgaaaga ttgaaatatt ctttcatact ttgcacatca agactttgat tttttaataa
     2941 atttaaacat tcttgcataa gtttttcaag agcttgtttt tctataaaaa gattgtgtga
     3001 aagtcttaca actaagcctt tttgggtaag ttttttgagt atattatctc cgctttttct
     3061 atcaagttct aaaaaatcat aaagattata aggagcttcg ggtttaatac cttgtttttt
     3121 taaaatttca tataattgat tattattttt ttcttgaagt ttttcaaaat ctatgccttt
     3181 tttaaaataa attccatttt gaaaatccaa taaatttgac atctctttaa gcccgagttc
     3241 gcaaaaattt tcacttgccc aagtaatcct taaagctaaa gaatgtgctg aaagcatggc
     3301 ataaggattt ttttcaagta tgaatttgat gaaattttta atttcttcta gactttgtaa
     3361 atgatataca ttaagatttt tttcatcaac aaatacttga tttaattctt ttgctaattt
     3421 caatgctttt tgatgagaaa gtttaaatct ctgataactt gaaagcaagc caaagccgta
     3481 tttgtgtgcg tcttttaaga aagaaaaagc cgctttaaaa tctttatttt tcaaaaacat
     3541 taaaaattta tttttttgtt ctttttttaa aggttcgctt aaaggattta aaaccttacc
     3601 accgcctata acacgattgt tttgtaataa aataaaagcc tcatcaaaac ttaaaaatac
     3661 atttttatca aaactaaaat gcacaaaaaa ttcatcattt tctagttttt ttaatatatt
     3721 tattttacat tctatttgtc ttgaacccac acaaaaaatc attttgctat tttgtaaatt
     3781 ttttgcttta actaaagcat cgcattcttt aaaggcttta aaataacctt ttttacttag
     3841 taaataacct tttttcaact ctttataatc acaatttaaa cttaaagcca cacggttgca
     3901 agctttgatt tgctctagat tggtatcgtg attttgtata tttttaacaa tgagttcttt
     3961 ttgagtgtct aaacagatga ttttttcatt taaagtgata cttccttcat tcaagctgcc
     4021 tgtaacgaca gttcctatac cttttagaga aaaaactcta tcgatataat aatgaaaaat
     4081 cagttcttca taattttctt tgttttctat ggtataaaga taatttttta attcttctat
     4141 gccttgatta ttttttatac tggtatgaaa tacttttaaa atgggataat ctaaattttt
     4201 taactcttct aaaatttcta cacttttttg ctctatgttt tcacaaagat cgcatttgct
     4261 aagtactaaa atgatatttt taatatcaag aatttttaaa atttctaaat gttctaaact
     4321 ttgttctttt aaaccctcgt taatatctac gataaataaa caaacactaa agccaaaagc
     4381 tccacttacc atagttttaa ccaaatcttt atgtcctgga acatcgataa aagaaatgtt
     4441 tttatctttt aatttaagat ttgaaaaact taaattaatg gtgatttgtc tttcttgttc
     4501 ttcttttaaa ctatcgcctt caaaaccatt taaagcttta atgagtgaag tttttccatg
     4561 atcaatatgt cctgcggttc ctataataac agatttcata agttttccat ttgattaatt
     4621 gtaagaataa gtttttgaag ttcattttct cgtatagttc taaaatcaag aacaaattca
     4681 tcattttcaa tgcgtcctat gatattttct tttctaaatc gagtttgtag ttttaaagca
     4741 tctccttgaa aagttagtat ataagtatct aaacttttat caggcataga acctcctcct
     4801 actaaacttt tgcttttttt gagttgggtt tgaaatttta attctttttg cactcttaaa
     4861 gctttttctt ctataaagga taagtcatca tttaaaagtt ttaaggtaat aattttttca
     4921 taatcttttt gtaaataagc ttttaagctt tcatttaaaa aagatagggt taatttatcc
     4981 actcttagca ttcttaaaag ttgattttgt ttaagttttt ctatgagttc tttttttcca
     5041 agtataatgc ctgcttgcac actaccaaaa agtttatctc cactaaaact taaaatatca
     5101 cattcttgta cgagtttttt gattttaggt tcatttttaa tcagcttttc atttaaattt
     5161 tcacaccagc cagaacctag atcataataa ctcaaaagcc ctttttcttt tgctagttca
     5221 tgtagatctt ttatatttgc ttcactatga aaacccataa gagcgaaatt agacttgtgg
     5281 gtttttaaaa ttagagcggt attttcactg atagcttgtt catagtcttt taagtgtgtt
     5341 ttgttgctag ttccaacttc gcaaagcttt acacctgcag cttttatcac ttcaggcaca
     5401 cgaaaacttc cgccaatttc tataagttct cctcttgagc ttatgacttc cttatcataa
     5461 caaagagaat taagcactaa aaaaactgcc gcagcgttgt tattgactac taaagcatct
     5521 tcgcattcaa aaagcatttt aagtttttcc aacaccaaag catagcgaga gcctcttttt
     5581 ccattttcta aatcaaactc tacattagaa taattacaaa tgatatcttt acacgcttca
     5641 taaagttctt catggattac acttctgcca aggtttgtgt gtataaccac tccacttgca
     5701 ttgatcacac tttgtaaatc tttgcggtaa aaagttttga tttctttttt gatttctaaa
     5761 agtagtttat ctttagaaat ttcatcttgg gaaaaatttt cttttagttt tgcgacaact
     5821 tttttacaaa aaaatgcttt gatataaaaa ggataggatt ttaaactctc atcttcaata
     5881 agagtgttaa tctgtggaaa agttctaaat ttgttcatct taagccttaa gaaaatattt
     5941 ggttatttta acatagaatt tataaaatga tgttttaaag agattaagga agacaatgca
     6001 agattttgtt tatataaaaa atgatgtttt aatccctttg cctgatgcta ttgaaatttt
     6061 agatcaggca aatgataaag aagcattaat ttgcaatgat aaaaatcaaa aagcacaaat
     6121 ttatgcccca gagattaact tttatcttaa aaattctcaa gatgaaattt tagagcaaag
     6181 taaaaatgtt ttaacgcttt atgaagcaag ggctagcgtt tatgatttag ggcttgattt
     6241 agaacaaagc aaagaagtgc aaaatcgttt gattttggca gatagtgata ctcaaactgt
     6301 agagttttta aaagaacatg gatttaaggt tattgcttta agtagtgcag aaattttagc
     6361 tgtttttgga agtgtggggg agctttgtgc tgtggttaaa aatcaaggcg aagaagtgga
     6421 aatagatttt gattttttac tttttaaagc tgaaaattta agcgttgtgc gtaaagattt
     6481 tacaagacaa agtggatgtt ataatctttt aaattttgaa aatcttgaag cattgttaga
     6541 gtttttgcaa agcaaaagtc caaaatatcc ttataaaact tatattagct ataatgctag
     6601 cgtgtgtcaa taccatgaaa gacgcagtga gcattgtgca aaatgtgctg aaatttgtcc
     6661 tactgtggcg attttaaaag atgatgaaaa aaagcattta gaattttctc aagtggattg
     6721 tttgggttgt ggaggatgta ttagtgtgtg tcctagcgga tcgcttgatt atgctcctat
     6781 gccaagagaa agttttttta ccctttgtga gttttataaa gataaaaaaa ttttaatcat
     6841 tcctaaaaaa atgtctttag aaaatttaaa tcttgcttta ccaaaagatg ttttaccctt
     6901 tatgatagag ggtgaaaaat ggctttcttc tatgcatttt ttaacacttt tgcaaaatag
     6961 tggtgcaaat ttggtttttt atacggactt tgtatctcgt ggtagcaatg aagccattat
     7021 gcttttaaat actttttttg agagaaaatt tcaaaaaaaa gctatttttg ttgctaaaga
     7081 tgaaaaagaa ttgcaaaatg ttttaaaaga gcaagaattc atacaagatt taaaatatga
     7141 ttttcataat aacaccttaa ctacaagaga aaattttgcc aaaagaatgc aagaaatgat
     7201 aaaaaatgaa gattttggta gtatagaaag tggcgaatgg ttgcgttatg gtaaggtaga
     7261 aatcaatcct aatacctgta cgctttgtct ttcttgtgtg ggtgcctgta atgtaggagc
     7321 tttaatcgct gataaacaag aaaatgcttt gaaattcaat gcttctcttt gtacgacttg
     7381 tgggtattgt gagttaagtt gtgctgaaaa agatacttta aaattatttc gtagtggaat
     7441 ggagtttaga gcttcttatt ttgaatatca aaccatggca aaagatgagc ttttttcctg
     7501 tatagaatgc ggtaaagaat ttgcgaccaa aaaagctgta gaaaaaatag ccaatttaat
     7561 gaagcctaaa tttggtaatg atgaggataa aatcaaaaca ctttattgct gtgcagattg
     7621 caaggcaaaa gtgatgataa aagcaatgat taattaagat caagaagctt tttcatccac
     7681 agcatagctt tagatatgac acttccatga gtttcatttt taaaaagttt aaaatgagtt
     7741 ttacaattag tttctttgga tattttttcg ctaagttttt gagcattgag cttagctaca
     7801 cctttgataa tacttgaatt tgtttccaat gaacctaatc cgatgtaaat tttagggcaa
     7861 gtttgtaatt ttatgatatt aggtaaaaac tcactattat cccaccataa agaaggtgaa
     7921 ataataaaat aatgactaaa aatcttacta tcataaagaa gtgtatcaat ggcaaaaagt
     7981 cctccaaaag aatgtccaaa gagaatttga tggctaaaat caataggata cattttgttg
     8041 atataaggga tgagttgggt tattaagaaa tttctaaatt ctttactacc tccaccttgt
     8101 ttatttaaat ttgttgtagg cgtataatct ttagtgcgtt tttgtgtatc aaaagctaaa
     8161 ttattatcat aacctattcc aataattaaa agattttctt tgacaggagt gttgaaaaga
     8221 tttaaaaaaa gaggaaaaaa ggcatttcca tcgagtaaat aaatgatttt atatttataa
     8281 tttgagtttt cattcttgt
//
LOCUS       DARGEY010000060         8155 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.060, whole genome shotgun sequence.
ACCESSION   DARGEY010000060 DARGEY010000000
VERSION     DARGEY010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8155)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8155)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8155
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.060"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..733)
                     /locus_tag="SF008_001164"
     CDS             complement(<1..733)
                     /locus_tag="SF008_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEG8233432.1"
                     /translation="MKNFFTILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFVINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGTIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFG"
     gene            complement(737..2119)
                     /locus_tag="SF008_001165"
     CDS             complement(737..2119)
                     /locus_tag="SF008_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEG8233433.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIAQILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLRLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVKEAIDEDLRNLEYYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            complement(2122..2847)
                     /locus_tag="SF008_001166"
     CDS             complement(2122..2847)
                     /locus_tag="SF008_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HEG8233434.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSIFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDLR
                     QFCDDNAVGILVVALENQAEVVDCQDFNKLYEVPISKPISVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            2969..4129
                     /locus_tag="SF008_001167"
     CDS             2969..4129
                     /locus_tag="SF008_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEG8233435.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDGQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKTKENFKHIIAGYEQVVKEALASNQPNPPKEEDFENYIEF"
     gene            complement(4126..4329)
                     /locus_tag="SF008_001168"
     CDS             complement(4126..4329)
                     /locus_tag="SF008_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233436.1"
                     /translation="MYERKDLRVLKIIQKAREFGDGDLLNEALVKQLIDADFCEINEK
                     EKEELATLLHSLINAKDKALLSN"
     gene            complement(4331..5011)
                     /locus_tag="SF008_001169"
     CDS             complement(4331..5011)
                     /locus_tag="SF008_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase family protein"
                     /protein_id="HEG8233437.1"
                     /translation="MGRSRKNFLSLLENDKVGIFCAFDKDYNVFRAKIHNENLFSHLG
                     FKDIEKCVFMDQIHSHKVIIYDENLKNLSCDGLISKEKNIALCVLSADCLPLILYHES
                     GIIAALHSGRKGSFENILKECVDQITMQNSHLDKNKFHLFILPGICAKNYEIDGEILE
                     FAKKEFKEFVQDDKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTTKRF
                     VSVVYLKD"
     gene            complement(4975..5586)
                     /locus_tag="SF008_001170"
     CDS             complement(4975..5586)
                     /locus_tag="SF008_001170"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEG8233438.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLKAKYRPNLGDSIAVNGVCLSVT
                     KLYEAGFEVELSRESRTHMAIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGTLEKI
                     QKDENGVDFHISLPKEAMKFMAEKGSIAVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            complement(5595..8135)
                     /locus_tag="SF008_001171"
     CDS             complement(5595..8135)
                     /locus_tag="SF008_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233439.1"
                     /translation="MKKIFYGVIAFVVVLLIAIYTILFTSFGNNIVANIAQKKIKESA
                     GLDVNITHFNLRFSNLELQANIANMADFNLKGALSPFKLGFDLDYLISLNQNYAKNLG
                     LNLNQNLSFGGKIQGKASDFTLDGKGYLLGSNVLLNARMYNYSPIALNLDAQNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKLDTSYINYEAIKKDFSLDLPLNS
                     NPKAEILANVKEDKIYAVSKIYNDYLNLQTQKTLYDISKNALSTDFNLSIPSLVKLEK
                     LTKTRLNGSLDVIGQTSVVNNALSSLNAQVIGLGGEVKASLKNNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKINTNELKKIAKIGLPNTIFS
                     LDAKANAKNSNISYNALLASNLLNIKKLQGTYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLTAKAHIIGTQVQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     TGMPNYASGIVNAKVNLDNIDFNNLNGKANLEAKGILNAATLSKILNKNFPNNTSYDL
                     NTKINFKNNIAQFDSVLNSSLADLTKLQGSFDISKMLLNSDFNLKINDFSKLGFLLDR
                     KLKGKAEFNGKVGFDKSLNFVVNSPNLFEGKLQSTFKDNLLLADLNGVDLSSLAQGLD
                     FMDIYQGKADMKANYNLLSEEGEVNLDMKEGKLKPNLITNALKILTLKDITNDVYRTA
                     NAKALIKKENIKLNLNMQADRSYILVQSGALNSKSGALNLPFDIKLDRANFKGSITGT
                     TENPKVNLNAGSVLNSIKNVVGGGVSDGAKSTGDKVDKAVNKLLNKIF"
BASE COUNT         2891 a         1424 c         1007 g         2833 t
ORIGIN      
        1 gcccaaaaag ataaataatc caagaaatat aaatccaaat aaaaaagaat aaaatagtag
       61 aaaaagatcc ataaacgcta gcgtatgttt tattatatac cacgtaatat acaaataaat
      121 tttttcctat ataccaaata gtacccgctc caaaagatac taaagctaaa cttttaagag
      181 ttcccttatg aacagaactt gaataagata taaaaaataa accccaaata attacaaagg
      241 gtaaaatttc aaaaaaatta aaccctattt tataatcatc taaagtttgt tggataaaac
      301 ctgaaatata aaaactaagc ccaagcccca aaggaacaag agttaaaaga gtccaataag
      361 aactaatact ttgccaaagt cctttaggtt catttttagt aatgcgattg attacaaaat
      421 catagcctga aaaaaaagct aaagaagtaa atgccatagc aataagacct acaataccca
      481 aatttacact attttttaaa aaagtatcga tgtaggtagc aacaacatct tgttgcgttg
      541 gtattaaaaa agcaaaaatt acttgctttg ctttttcata ataagcttta aaactggaaa
      601 tttgcgtaaa aacagaaaaa catacaaata aaataggtat taaagataat acagtataaa
      661 aactaagcgc tgctgcataa tttaaaattt ccttatcacg caaatttagt aaaatagtaa
      721 aaaaattttt caccttctaa agtcccattt taaaaggatt tagtatatta tttggatcaa
      781 aagctttttt aatatttctc attaaattca tttcggcttc agaaaaagct aaattcataa
      841 aaggtgcctt agagagtccg ataccatgct ctccgcttaa agttcctcca agtttcactg
      901 ttaatttaaa aatctcttcc acagcttcat agcctttttt cacctgctct ttatcatttt
      961 tatcaggaac cataacatta gtatgcacat ttccatcccc tgtatgtcca aaacaaggaa
     1021 ttttaaaacc atatttttta gaaatctcat ctataccttc aagcaaagta ggtagtttag
     1081 aacgcggaac tgtaatatct tcattaagtt ttaaagttcc atacatggca atgctttgag
     1141 aacaatttct tctagcaaac caaatatctg cggtttcttg ttcatctttt gctattttaa
     1201 attcgctagc gccagcttct aaaaaataat attctaaatt tcttaaatcc tcatcaatag
     1261 cctctttaac attaccatcc acatcagcaa tcaaaatagc tccagcttct ataggcaaac
     1321 ctttattaaa tttgctctca accgctctaa tgctaagatt gtctaaaaat tccatagata
     1381 caggacttac accgctagca agacttttgt aaaccgcatt catagcactt tttacacttg
     1441 gaaaaatagc aaaagcagtt tttttaaatt taggcaaagg tattaatctt aaagtaagct
     1501 cacttaaaac tgccaaagaa ccttcactag cgattaaaat tcctgccaaa ttataacctg
     1561 ctacatcttt aatagtgcgt ttccctgcac gaatgatttc tccgctaggc aaaacagccc
     1621 ttaaagccat cacataatct tttgtaatgc catattttgc agctctcatt cccccagcat
     1681 tttcgcttac attaccccct aagcttgaat actccatgct agcagggtca ggtgggtaaa
     1741 aaagtccata tttagccact tctttttgta aatgtatatt aataacccca ggttgcacaa
     1801 cagccactaa attttcaaga tcaatttcta aaattttatt catatgcttt tcaaaagcaa
     1861 gcaccacccc gccattaaca gctaaagctc ctcctgtaaa accagatcct gagcctcgag
     1921 gtatgactat gatattattt tcattgcaaa attttaaaat ttgagcaata tcttcttcat
     1981 ttcttggaaa aagaacccca tcgggtaaat aatgtttttt tgtcgcatca tagctataag
     2041 ctcttttgtg aatttcatca aaataagcgt tttcttctcc taaaaatcgt ttaaaatatt
     2101 gttcaaattc ttttttcatg tttattgcac cttaggaaga ttaatcaaag catcataata
     2161 tctataataa tttcctattt cttgagagtt aaaatcaaaa aaattacttt tatatccacc
     2221 tatacgagaa taaaaaggaa cctgaacgct aattggtttg cttataggca cttcataaag
     2281 cttattaaaa tcttgacaat ccacaacttc tgcttgattt tccaaagcta caaccaaaat
     2341 accaaccgca ttatcatcac aaaattgcct aagatctgaa cgcttaggag aaagagtagc
     2401 cgttctaatt aattgtgctc caaaaatgtc aatatgggta aaatatatct gcggaaattc
     2461 tctaacaagt tcattataag tttgttcatc aggagcaatt accaatcctc tatcataaag
     2521 aaaatttaaa acaacctcat cacctacttt aggtaaaaca tttggcaaag gcaaagcatc
     2581 ttgcttaaga gctgagaaaa tgctaaattc taattttgcc aaaccatttt ttttatctat
     2641 aacacttgct ctagcgatga tactttgcga attgctaaaa tgttgtacta ctacgccact
     2701 tgaataaagt tttatatcat cactatcttt aatataacca taaatatcat caacttttac
     2761 aagttcactt tttataggtt ttaaatcaaa tccaaccgca aagaggctaa ggtttaaagc
     2821 taaaaaacac actatagttt taaacaaatt tgctccttaa ataaaaattt atagaattat
     2881 aatccttttt tgttaagcaa ttgtaagaaa aataaagtaa aatatagctt tcaaatttca
     2941 aaattctttt aaaaattaag gtcatctcat gaaaaaatta ttgcttttat ttatttttgt
     3001 tgttcaaagt tttgcagctt taagtgttga agagctaact tgggataatg gagatacctt
     3061 acttaaattc ttacaaagaa attccatacc tatgtcactt tattatggac ttgatagaga
     3121 agatcaagaa cttgcttctg atatagccta taaaataaaa tatcaagttt taaaagatga
     3181 aaacaacaac atagaacaag ttttaattcc aattagtgat gatttacaaa ttcatatcta
     3241 taaagataaa gatggacaat acactcttgc ttttactcct gtatcttatc aaaaagaaga
     3301 tagaatttta catttaacca ttaaaagttc tgcctatcaa gatgtctatg aggaaagtgg
     3361 tagcagtact ttagctcgtg ctatggttcg tgcttttcga ggaagtataa attttcgcaa
     3421 tatccaaaaa ggtgatgaag taaccctata ttatgaacaa aaaagacgca tgggtaaact
     3481 ttggggtgat ataaatataa aaatggcaat ggtagaaatc aataaaagcg ctagagaagt
     3541 cttttcttat aatgatatat tctatgatcg cgatggtaaa gaattagaat cttttttact
     3601 tacaaaacct gtgaactaca ctagaatttc ctctcctttt acaacagcaa gatatcatcc
     3661 tatattaaaa cgctatcgtg ctcatcttgg tatagactat gctgcaccta ctggaactcc
     3721 tgtgaaaagt gctggcaaag gagtagtaac ctttataggc acaaaaggtg gttatggaaa
     3781 tgtaattcaa atcaagcatg actcaggtta tatgacttta tatgctcatc ttagtcgttt
     3841 tgcaaaaatt aaaaacggac aaaaggtaaa tcaaggacaa gtaattgcat atgttggttc
     3901 aacaggtatg agcacaggtc ctcatttgca ttttggagta tatttaaata ataaagctat
     3961 aaatcctgca tctgttgtaa aaatcgccaa atcagaactt agtggaaaaa cgaaagagaa
     4021 ttttaaacat atcatagctg gatacgagca ggttgttaaa gaagccctag cctcgaatca
     4081 acctaatcct ccaaaagaag aagattttga aaactatata gaattttaat tactcaataa
     4141 cgctttatct tttgcattga ttaaagaatg tagaagagtt gcaagctctt ctttttcttt
     4201 ttcattaatt tcacaaaaat ctgcatcaat caattgtttc accaaagctt catttaacaa
     4261 atctccatcg ccaaattctc tagctttttg aatgattttt aacaccctta aatcttttct
     4321 ttcatacatt ttaatccttt aaataaacca cactcacaaa acgcttagtc gttttatcac
     4381 gacgataaga aaaaaaactc tcatcatcaa agctacaaat tccacaatct ttaatatttt
     4441 caatgcctaa attttgcgct tgaaatttta ctaaagcttt taaatcaagt ttatcatctt
     4501 gaacaaattc tttaaattct tttttagcaa attctaaaat ttctccatct atttcataat
     4561 ttttagcaca aattccaggc aggataaaaa gatgaaattt attcttatct aaatgtgaat
     4621 tttgcatagt aatttgatca acacattctt ttaggatatt ttcaaagctt ccttttctac
     4681 ctgaatgcaa agctgctata ataccacttt catgatataa aatcaaaggc agacaatccg
     4741 cacttaaaac acaaagagcg atattttttt ccttgcttat aagtccatca caactgagat
     4801 tttttaaatt ttcatcataa atgataactt tatgagaatg aatttgatcc ataaaaacac
     4861 atttttcaat atctttaaaa cctaaatgag aaaataaatt ctcattatga attttagctc
     4921 taaaaacatt ataatcctta tcaaaagcac aaaaaatacc gactttatca ttttctaata
     4981 aagataagaa attctttcga cttcttccca tgataatcct ttgtttttac cttgtaattg
     5041 tgcataaata taacgagcaa gtaaatcact ttctatattg atttttctac ctacttgata
     5101 gtctttaaaa agcgtttctt taaaggtaat aggaataata gtaagcctaa taccattttt
     5161 taaaatttca ttgatagtaa gacttactcc atcaacagct atacttcctt tttctgccat
     5221 aaatttcata gcttctttgg gtaaagatat atgaaaatct actccatttt catctttttg
     5281 aatcttttca agtgtgccga taaaatcaat atgtccttgc ataagatgtc catcgattct
     5341 atcgccatat cttaaagcag gttctatatg aactttatct tttaaattct ctatagccat
     5401 atgagtgcga ctttcacgag aaagctccac ttcaaaaccc gcttcataaa gttttgttac
     5461 acttaaacaa actccattta cggctatgct atcgccaaga tttgggcgat attttgcttt
     5521 taagcttaaa gtattgtttt gataagattg aactttagca atttctctta tgagtccatt
     5581 aaacattttt taccttaaaa aatcttattt aataatttat tcaccgcttt atcaacttta
     5641 tcgccagtac ttttagcacc gtcactcaca ccgccaccca ctacattttt aatagaattt
     5701 aacacgcttc ctgcatttaa atttacttta ggattttccg tagttcctgt aatacttcct
     5761 ttaaaattag ctctatcgag tttaatatca aaaggcaaat ttaaagcccc gcttttagaa
     5821 tttaaagctc ctgattgtac taaaatataa gaacgatctg cttgcatatt aagattaagc
     5881 ttgatatttt cttttttaat caaagcttta gcattagcag tgcgataaac atcattggta
     5941 atatctttta gtgttaaaat ttttaaagca ttggtaataa gatttggttt taatttaccc
     6001 tctttcatat ccaaattaac ctcgccttct tcgcttaaaa gattgtaatt tgccttcatg
     6061 tccgccttac cttgataaat atccataaaa tccaaaccct gagctagact acttaaatcc
     6121 actccgttta aatcagcaag taaaaggtta tctttaaatg tgctttgaag ttttccttca
     6181 aataaatttg gactatttac aacaaaattt aaactcttat caaaacctac ctttccatta
     6241 aattctgcct tacctttaag ttttctatct aacaaaaagc ctagttttga aaaatcattt
     6301 atctttaaat taaaatccga atttaaaagc atcttactta tatcaaaact tccttgtagt
     6361 tttgtaagat cagctaaaga tgaatttaaa acagaatcaa attgagcgat attgttttta
     6421 aaattaattt tggtatttaa atcataactt gtattgtttg gaaaattttt atttaaaatt
     6481 ttacttaaag ttgcagcatt taaaataccc ttagcttcta aatttgcttt accattaaga
     6541 ttgttaaaat cgatattatc taaattaact tttgcattaa caatcccact ggcataattt
     6601 ggcatacctg ttataacaaa aagtttagat aaatcaagtt tatcaatgtt taaatcaagt
     6661 tttttaccat ttgaatcagc cttgattaca ccatctgcca aatttgcatt tgcatttaaa
     6721 ttttgtactt gagtgcctat aatatgagct tttgcagtaa gatctgcctt accttgtaat
     6781 ttttgtcctg ctatagcact aaactgagac aagtcatcaa taaaagcatt taaatctgta
     6841 tttaactcac tattttttaa attataagtt ccttgaagtt ttttgatatt aagtaaattt
     6901 gaagcaagta aagcattgta agaaatatta ctattttttg catttgcttt agcatcaaga
     6961 ctaaaaattg tatttggaag tcctatttta gcaatttttt taagctcatt ggtgttaatc
     7021 tttgcattgt ttatttttgc ctcaagatcg aaattagaaa aatccaaatc cgcatttaaa
     7081 agtttagcat ttaaatttcc agaaactaaa gctccatatc ctgcaagagc taataatttt
     7141 tccaaacttg cttcattaat atctgcaaaa attttattat ttttcaaact tgcctttacc
     7201 tctccaccaa gtccgataac ttgagcattt aaacttgata aggcattatt tacaacactt
     7261 gtttgaccta tcacatccaa actaccattt agtctagttt ttgtaagttt ttcaagcttt
     7321 acaagagaag gaatacttaa attaaaatca gtgcttaaag cattcttgct aatatcataa
     7381 agagtttttt gggtttgtaa gttaagataa tcattgtaaa ttttacttac agcataaatc
     7441 ttatcttctt taacattggc caaaatttct gctttaggat tagaatttaa aggcaagtct
     7501 aaagaaaaat ctttttttat cgcctcatag tttatataac ttgtatcaag ttttatgatg
     7561 atatttccat caggttttaa attctgtgct gaaatttttg cttgagcatt taaaaaacct
     7621 ttagcgtaac tagggtaaga taaaagatga agtatttctt ctatcttaag attttgcgca
     7681 tctaaattta aagcaatagg gctgtaatta tacattcttg catttaaaag tacatttgaa
     7741 cctagtaaat aaccctttcc atctaaagta aaatcacttg ctttaccttg aatcttacca
     7801 ccaaaagaaa ggttttgatt taaatttaaa cctaaatttt tagcataatt ttgatttaaa
     7861 gaaataagat agtcaagatc aaatccaagc ttaaaaggac tcaaagctcc cttaagatta
     7921 aaatctgcca tatttgcgat atttgcttgc aattcaagat ttgaaaaacg taaattaaaa
     7981 tgcgtgatat ttacatctaa tcccgcactt tctttaatct ttttttgcgc tatatttgcc
     8041 actatattat taccaaaact tgtgaaaagt atggtataaa tagcaatcaa aagcacaaca
     8101 acaaaagcta taactccata aaaaatcttt ttcattttta tcctttagtt tattt
//
LOCUS       DARGEY010000061         7915 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.061, whole genome shotgun sequence.
ACCESSION   DARGEY010000061 DARGEY010000000
VERSION     DARGEY010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7915)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7915)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7915
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.061"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..617)
                     /locus_tag="SF008_001172"
     CDS             complement(<1..617)
                     /locus_tag="SF008_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006655617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEG8233440.1"
                     /translation="MKIAILTSPNQWFIPYAKELNQQIKNSKLFYNHTEIFNFDIVFI
                     LSYHKIIDKNFLKHNKHNIVIHASNLPQGKGWAPLFHQVIEGKNEIAFSLFEADDKAD
                     NGDIYLQKNLKLNGLELYEELREKQARFTLDMCLEFLELYPDIQAKKQVGKESFYPKR
                     SPKDSELDINKSLNEQFNLLRIASNEDFPAFFYKDGKKFILKIYP"
     gene            complement(645..1118)
                     /gene="pseH"
                     /locus_tag="SF008_001173"
     CDS             complement(645..1118)
                     /gene="pseH"
                     /locus_tag="SF008_001173"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004276158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HEG8233441.1"
                     /translation="MIGLKDFTHLNGNEILLIWQWRNDEKISQFMKTKYIDFQEHLNF
                     ITSLKKDQSKKYFLVFKDDGAIGVIDFINIMQDSCEFGLYAKPDLKGIGQILIQEIKK
                     YAFENLKIKELKACVFKQNKKALDLYLKNGFYIKNEDKNMFYVEFMGGGYSQIST"
     gene            complement(1115..1936)
                     /gene="pseG"
                     /locus_tag="SF008_001174"
     CDS             complement(1115..1936)
                     /gene="pseG"
                     /locus_tag="SF008_001174"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HEG8233442.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELDSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIRDEFYKESKIEREKIWDY
                     FICIGGTDIKNLSMQIASDLPKNKKIAIATSSSNKNLKKLEKFIQNHENVKLFIDEEI
                     SKLMNESTKLIISASSLVNEALLLKANFKAVCVAKNQEKLANWLVQKGYEVEYRL"
     gene            complement(1920..2618)
                     /gene="pseF"
                     /locus_tag="SF008_001175"
     CDS             complement(1920..2618)
                     /gene="pseF"
                     /locus_tag="SF008_001175"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HEG8233443.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLIAYSIENALNSGIFD
                     EIVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAAVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKNILKQAYEKFIQNESKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            2710..3921
                     /locus_tag="SF008_001176"
     CDS             2710..3921
                     /locus_tag="SF008_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8233444.1"
                     /translation="MLINQTFEIDSCDDVELNIKRTSKLEYRISYDDEKDIKAIVFIV
                     GGFGANANISFLDFDREYIAKNFDVVVVHVFYHCFCARQSIDQKYNPKLIPNQDDLER
                     INDILKNINLGHLSVNKDNFEQIIPLIEQKVNEMKQAGLVDENQKIELSCDFIPPNGD
                     YQNYGIMAAIDHINVLKDLVKKFPNFKNLPKIYGGGSYGGYLSLLIAKIAPWHVDGVI
                     DNSGVCLPFLAHILGRDMNQGEFVFEGDNNRIYCFVQKYWTRNINSSYYFGDENYLIR
                     AVLNSNHLKIQASMNNNTIFISYHSMQDMGAPVQNKIELYKCYQELGYDATLYLVKDE
                     NDIDGRFIKSLEHGLRMTDKALFRKELPLMLEKLQGRKFDMSKNSITYPCKDKQFIFK
                     DKDDKFELEIV"
     gene            complement(4234..5253)
                     /locus_tag="SF008_001177"
     CDS             complement(4234..5253)
                     /locus_tag="SF008_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP synthase"
                     /protein_id="HEG8233445.1"
                     /translation="MNLKLNSHNIKAISIVLPKNPHTLEKELQECNLNQKKYELLKQN
                     TGINHHFISPNNIYASDLASKALEKLFRENLLLKDELDVLLVYSFSPDFLAPALSSLI
                     HKNLGLSEKTLCFDNIAFCPGFLQGLMQAFSLLDNENIKKIAFICVSVKSKKIPKKDK
                     ITYLSNSDSASVILLEKSNTKEKAFFSQKIFSKLATEETFPLKCFKEANDFIDMDKNL
                     TFSHLNENFPRFFDDFFDNFKLDKSKIGEFFFGSANNFIKTKLLELLNFKEIKNDETL
                     KNYGDVTINKLAFDLANYEWRKGGGIKQVFMASFGTGITFNAMSLKIDFSKIKNFIEI
                     IDFNT"
     gene            5354..6424
                     /locus_tag="SF008_001178"
                     /pseudo
     CDS             5354..6424
                     /locus_tag="SF008_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
     gene            complement(6421..6648)
                     /locus_tag="SF008_001179"
     CDS             complement(6421..6648)
                     /locus_tag="SF008_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8233446.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLELAMKD"
     gene            complement(6650..7369)
                     /locus_tag="SF008_001180"
     CDS             complement(6650..7369)
                     /locus_tag="SF008_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyl transferase"
                     /protein_id="HEG8233447.1"
                     /translation="MTYSYIYIIGTGKVAKECQKIANDFFRQEVNFVKNIENLDDFFK
                     NLKNCLIISANNFYIFKKECIQKNTIINYHNALLPFHRGCNAHIWSIWENDKKTGITW
                     HMVKESIDTGDILVQKEIKLDNNCTALSLLNAQHKLALTLFREALEILKNKAFKMQIS
                     GGGYHKKLSLPNNGYLDLTWNKEKISRFLRAMDCGALSGVPKARLEILGEEREILFYE
                     INELDLILNLSDNVILKITKE"
     gene            complement(7369..>7915)
                     /locus_tag="SF008_001181"
     CDS             complement(7369..>7915)
                     /locus_tag="SF008_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8233448.1"
                     /translation="FNLKANYIKILTKTDRQLLQHNDFLKLNHFKEILNYKQMILKKD
                     EIKLKKFTFISKASHEDSKEIYSFFRKYFNQYLFYFSHKNLEEKISDILIYKENQKIR
                     AALIYTQTLNTNFLDFIAVDRNLKHKNVAFALLNHYFAANTQNKFFKLFVEEKNQKAI
                     NFYKRAGFCFNHINLKFYRNF"
BASE COUNT         2705 a         1057 c         1178 g         2975 t
ORIGIN      
        1 tctggataaa ttttgagtat aaatttttta ccatctttgt aaaaaaatgc tggaaaatct
       61 tcattgctag ctatgcgtaa gagattaaat tgttcattta aacttttatt tatatcaagc
      121 tcgctatctt ttggacttct tttaggataa aaactttctt tgcccacttg tttttttgct
      181 tgtatatcgg gataaagttc taaaaattct aaacacatat ctagagtaaa ccgagcttgt
      241 ttctctctta gctcttcata taattctaag ccatttaatt taaggttttt ttgtaaataa
      301 atatcgccat tatcggcttt atcgtctgct tcaaaaagcg aaaaggcgat ttcatttttg
      361 ccttctatga cttgatgaaa aagtggagcc cagccttttc cttggggtaa atttgaagca
      421 tggatgacga tattgtgttt gttgtgtttt agaaaatttt tatctatgat tttatgataa
      481 gaaagtataa atactatatc aaaattaaaa atctctgtat gattgtaaaa aagcttggaa
      541 tttttgattt gctggttaag ttctttagca taagggataa accattgatt aggcgaggta
      601 agtatggcta ttttcatact gctagccttt ttataataag aagtttaggt tgaaatttga
      661 ctataccccc cccccataaa ttctacataa aacatattct tatcctcatt tttaatataa
      721 aaaccatttt ttaaatataa atctaaagcc tttttatttt gcttaaaaac gcaagctttt
      781 aattctttta tttttaaatt ttcaaaggcg tattttttga tttcctgtat taaaatttgc
      841 cctatgcctt ttaaatcagg ctttgcataa agtccaaatt cgcaagaatc ttgcattata
      901 ttgataaaat caatcacgcc aatagcccca tcatctttaa aaaccaaaaa atatttttta
      961 ctttgatctt ttttcaagct agtaatgaaa tttaaatgct cttgaaaatc gatatatttt
     1021 gtcttcataa actggcttat tttttcatca ttgcgccatt gccatataag caaaatttcg
     1081 tttccattta aatgagtgaa atcttttaag cctatcaaag tctatactcc acttcatagc
     1141 ctttttgaac tagccaattg gctagttttt cttgattttt agcgacacaa acggctttaa
     1201 aattagcctt taaaagcaaa gcttcattga ctaaagaact agcactgatg ataagctttg
     1261 tgctttcatt cattaatttt gaaatttctt catcgataaa gagctttaca ttttcatgat
     1321 tttggatgaa tttttcaagt tttttgagat ttttattgga tgagcttgta gcgattgcaa
     1381 tttttttatt tttaggcaaa tcagaggcaa tttgcatgga aagatttttg atatctgtgc
     1441 cacctatgca aatgaaataa tcccaaattt tctctctttc tatcttgctt tctttataaa
     1501 attcatctct aattaaagca taagaaaacc cacatcttac ttcgcattta aaaggcacta
     1561 aaccttcata atcacttgct tttgcatagg cattgacatt gagtaaaata tcacaatgat
     1621 gaggctttat ttcatcatca aagcttagaa ttttcacccc tgtttcaagc ttgatcagtt
     1681 tttcatcatc tacgctgatg ccatagtgat caatgataag aagttcaaat ttttcttctt
     1741 tgatgagatt gataagttcg taaatgcttt cactatcaag ctcataaaca ggataaggaa
     1801 tttcatcgat caaagagcct tctaaaggca aacaagcaaa acttacatcg ctatattgtt
     1861 tagctaagac tagatcacgt ttaatgtgtc caaagcctat ttgactggag ctatcgcttc
     1921 taaaaagcac tttcatgatt taccttataa agtatttttg caaattctaa atcttgtatg
     1981 gtatctatat cgcaaactaa atttcttggc aatacaaata cactagaatg aggtttaaat
     2041 ataaaatctt cttcaagcca agctttactt gtgccaaaat aaaaagctcc tgcatcgtga
     2101 taagcttttg ttaagtcttg tgaacgactt ttataatgtt tttcatcaaa catataaact
     2161 tgattattct catttagata aaaagccctt tgtataggat actcaaactc agtggcggca
     2221 aataaaaact tgctttcatt ttgtataaat ttttcataag cttgttttaa aatgttttta
     2281 tttaaaagcg gagcagtagc ataaagacaa cagacatgat cataaatttg attttggctt
     2341 tgtaaaattt ctatggcatt ttgcactgca gcagtgcttg aagcataatc atcgcttaaa
     2401 tttttatcac gcacaaatgg agcttttgca ccgtatttta aggctacttc tatgatttct
     2461 tcatcgtcgc ttgaaagtac tatttcatca aaaatacctg aatttaaagc attttctatg
     2521 ctataagcga ttaaaggttt acctagaaaa tcaatgatat tttttctagg aattcttttt
     2581 gatccaccac gagcagggat tatgcaaaga tttttcatag ttaagccttg ttttttgtgt
     2641 tttattttac taaaatttaa gtataattgt ctttaaaata caataaaata atgcaaatgg
     2701 ggtggaataa tgctcataaa tcaaaccttt gaaattgatt cttgtgatga tgtagaatta
     2761 aatataaaaa gaactagcaa acttgaatac cgcattagct atgatgatga aaaagatatc
     2821 aaagccatag tttttatagt gggtggtttt ggagctaatg caaatatttc ttttttagat
     2881 tttgataggg aatatattgc taaaaatttt gatgttgtag tggtacatgt tttttatcat
     2941 tgtttttgtg caagacaaag tattgatcaa aagtataatc caaagcttat tcccaatcaa
     3001 gatgatttag agcgtatcaa tgatatttta aaaaatatta atttaggaca tttatcggtt
     3061 aataaagata attttgaaca aattattcct cttatagagc aaaaagttaa tgaaatgaaa
     3121 caagcaggtt tggttgatga aaatcaaaaa atagaacttt cttgtgattt tatcccacct
     3181 aatggagatt atcaaaacta tggcattatg gcagctattg atcatatcaa tgttttaaaa
     3241 gatcttgtaa aaaaatttcc aaattttaaa aaccttccaa agatttatgg gggaggatct
     3301 tatggaggat atttatcttt actgatagcc aagatagctc cttggcatgt agatggtgtg
     3361 attgataatt cgggagtttg cttgccattt ttagcacata ttttgggaag agatatgaat
     3421 caaggagaat ttgtttttga aggagataat aatagaattt attgttttgt gcaaaaatat
     3481 tggactagaa atataaattc ttcttattat tttggtgatg aaaattattt aattagagct
     3541 gttttaaact caaatcatct caaaattcaa gcaagtatga acaataatac tatctttata
     3601 agctatcaca gcatgcaaga tatgggcgct ccagtgcaaa ataaaataga actttataag
     3661 tgttatcagg aattaggata tgatgcgact ttgtatttgg taaaagatga aaatgatata
     3721 gatggtagat ttataaaaag tctagagcac ggtcttagaa tgactgataa agctttattt
     3781 agaaaagaac ttcctttgat gcttgaaaaa ctacaaggaa gaaaatttga tatgagtaaa
     3841 aattctatca cttatccttg caaagacaag caatttattt ttaaagataa agatgataaa
     3901 tttgagcttg aaattgttta agattatcgt tagtaaagtt aagaaaggat tgctagggag
     3961 gggctttgta gatggatatt tccttgccta atataaaaat taaatttatg atttttttaa
     4021 aaaaagtgaa atatttttgt ataatgattt gtttaagtgg ttaatttctc ttggtgaaaa
     4081 aggtgctacc aataatagaa aaagacttta aaataatttt ctgttgaaga tggcaaatga
     4141 gttgcttgag ttgataaata actctaattt ttccaccgca ttgttttagc ctatgcttaa
     4201 ataaaatcta cgcttgaaac atagtatatt ttttcaagta ttaaaatcaa taatttcgat
     4261 aaagttttta attttgctaa aatcaatttt caaactcatg gcattaaagg taattcctgt
     4321 gccaaaacta gccataaaaa cttgttttat gccccccccc ttcctccatt catagtttgc
     4381 caaatcaaag gctaatttat ttatcgtaac atcgccataa ttttttaaag tttcatcatt
     4441 tttaatttct ttgaaattta agagttctaa taatttagtt tttataaaat tatttgcact
     4501 tccaaagaaa aattcgccta ttttgctttt atcaagttta aaattatcaa aaaaatcatc
     4561 aaaaaatcga ggaaaatttt catttaagtg agaaaatgtg agatttttgt ccatatcgat
     4621 aaaatcattt gcttctttaa agcattttag aggaaaagtt tcttctgtgg ctaatttgga
     4681 aaagattttt tgcgagaaaa aagctttttc ttttgtatta gatttttcaa gcaaaataac
     4741 actagcactg tcgctattac taaggtaggt gattttatct tttttgggta tttttttact
     4801 ttttacactt acgcaaatga aagctatttt tttgatattt tcattatcta gtaaagaaaa
     4861 agcttgcatt aggccttgta aaaatcctgg gcaaaaagca atattatcaa aacacagagt
     4921 tttttcactt aaaccaagat ttttatggat taaacttgaa agtgcagggg ctagaaaatc
     4981 tggtgaaaaa ctataaacta aaagtacatc aagctcatct tttaaaagca aattttctct
     5041 aaaaagcttt tctagtgctt tgcttgctaa atcacttgca tagatattat tagggcttat
     5101 gaaatgatga tttataccgg tattttgctt taaaagttcg tattttttct ggtttaaatt
     5161 gcattcttgt aattcttttt ctaaggtatg tggatttttg ggtaaaacta tactaatagc
     5221 cttaatattg tgtgagttta attttaaatt catttttact tctttctagt atttaataga
     5281 taaattgtaa cttatgaatg cttaaaattt aagcacaaac ggagtataat tttttgtaaa
     5341 gaaaggatat aaaatgacag catatttaca tataggaact actaatacag gaaatcaaga
     5401 aaaacaaggc ttcttgatgc aaaacgaaga aaggctttta aaaaaaaggc tatatttatc
     5461 caaaaagcct tagagtggca aataggcatt gggctttggt agatatggtt ttagaactag
     5521 ttcaaaaaga agatattttg caaaaagaga gtattttaag tcatatcaca aatgaaagac
     5581 ttcttagagc tatagaaaat tttaaaagcg aaagtgcttt acataaagat aaaaatttat
     5641 tttttcagct gagggtatag tttgggattt ttctaccaaa aaacatgtag aaattttaga
     5701 aaagattatg agagagttag gttttactca aatttatatt attgtgtatt ttagagatac
     5761 tttgggttat ttaaactcac attgttctca agatcataaa aacaatatgg ggtattattc
     5821 tgctgatttt gctccgcaag atcatcctag aaaatatatt tttgactatg aatggatttg
     5881 caaaactcat gctgaggtat ttggagaaga aaatttgata gtaagacttc taagggagga
     5941 ttatgtagga gggactttac ttaaggattt tgtttatcat ttaggacttg aatgggatga
     6001 gagttttgtt ttaaaacaaa ccaaaaatga aagttttaat cttttaggaa tggagcttat
     6061 gtcaagatta aatcaaaaag atttaaagca ggataatctt aattctttgc tttttatggc
     6121 aagaagaaaa tttgaaggca gcaaagaaaa aagattaaaa tttgcagtgc aaaaagatat
     6181 tgctaaagct tatgtggatt attttgcttc ttcacttgaa tgggtaaaaa acaaatattt
     6241 cccgcataaa aattctcttt ttactcctgt gaattgggaa gaatatgaac aaaattatac
     6301 tttaacccat atgctaagta aagattggga tgatgtggcg gattttatag cacaaattat
     6361 tgtttctaaa aatgaaatca tcagttcttt aaaagaacag cttgaacttg caaggaaaga
     6421 ttagtctttc attgcaagtt caagcatttt tttgatattt tcaaagcttt caaaattttc
     6481 aggtgtgata aattctgctt ttaagggttt tttataaaat ttttctattt cggcaaccaa
     6541 agccatgata tcgatactat cgataaaatc ttcacttact agattttcca tactctcatt
     6601 gatatctgtt ctttctatat tgataaaaaa ttgtttgatt tcttgcattt tattcctttg
     6661 tgatttttaa aatgacatta tcgcttaaat ttaaaattaa atcaagctca ttgatttcat
     6721 aaaataaaat ttctctttct tcacctaata tttctaatct agctttagga actccgctta
     6781 aggcaccgca gtccatagct cttaaaaagc gagaaatttt ttctttattc caagtaagat
     6841 ctaaataacc attatttggt aaagataatt ttttgtgata ccccccccct gaaatttgca
     6901 ttttaaaagc tttatttttt aaaatttcta aagcttctct aaataaagtt agagcaagtt
     6961 tgtgttgagc gtttaaaaga cttaaagcag tacaattatt atcaagtttt atttcttttt
     7021 gaactaaaat atcacctgta tctatacttt ctttaaccat atgccaagta atacctgttt
     7081 ttttatcgtt ttcccatata ctccaaatat gtgcattaca tcctctgtga aaaggtaata
     7141 atgcgttgtg gtaattaata atagtatttt tttgaataca ttcttttttg aaaatataaa
     7201 aattattagc actaataata aggcaatttt taagattttt aaagaaatca tctaaatttt
     7261 ctatattttt tacaaaattt acttcttgtc tgaaaaaatc attagctatt ttttggcatt
     7321 ctttggctac tttgcctgtg cctatgatgt aaatatatga gtaagtcatt agaaattcct
     7381 ataaaatttt aaattaatat gattaaaaca aaaacccgcc cttttataaa aattaatggc
     7441 tttttgattt ttttcttcta caaaaagttt aaagaattta ttttgagtat tggctgcaaa
     7501 ataatgattt agtaaagcaa aagctacatt tttatgtttt aaatttctgt ctacggctat
     7561 aaaatctaaa aaatttgtat tgagagtttg agtatagatc aaagcagcgc gaattttttg
     7621 attttcttta tagataagta tatcagatat tttttcttca agatttttgt gcgaaaaata
     7681 aaacaaatat tgattaaaat attttctgaa aaagctataa atttccttgc tatcttcatg
     7741 tgaagcttta gagataaagg taaatttttt taattttatc tcatcttttt tgagtatcat
     7801 ttgtttataa ttgagtattt ctttaaaatg attgagtttt aaaaaatcat tatgttgtaa
     7861 aagttgccta tcggttttgg ttaagatttt tatataatta gcctttaaat taaaa
//
LOCUS       DARGEY010000062         7652 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.062, whole genome shotgun sequence.
ACCESSION   DARGEY010000062 DARGEY010000000
VERSION     DARGEY010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7652)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7652)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7652
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.062"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            80..1177
                     /locus_tag="SF008_001182"
     CDS             80..1177
                     /locus_tag="SF008_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HEG8233449.1"
                     /translation="MKTSFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSVQSIKDTTH
                     LAATAFAIIIGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGL
                     KGFLLSAIVIFFVFIIALFVGTKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDP
                     FKGILAVGTVVIFGLVFMFLYPIAFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEM
                     AKDMAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFA
                     FAFLGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKS
                     GSRVFGLAFVLGLVLVFGGYFLTLAFKGILW"
     gene            1272..1844
                     /locus_tag="SF008_001183"
     CDS             1272..1844
                     /locus_tag="SF008_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233450.1"
                     /translation="MKKILVSVLSSCLLASALSAVSFKEDSLKVSFEGYKTKDMIGTK
                     GEFKNVEYKFSKNIKDLASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDT
                     DIKVVFQDVIAGENKGVISAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSK
                     ALKALSDVAAGHGGISWPLVDISFNADLAE"
     gene            complement(1860..2426)
                     /gene="rsmG"
                     /locus_tag="SF008_001184"
     CDS             complement(1860..2426)
                     /gene="rsmG"
                     /locus_tag="SF008_001184"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEG8233451.1"
                     /translation="MIFKDYDFLQNYDLKNFEEKVKIYKELLSKFNRIHNLTHLKNID
                     ENIFDSIKILDFYDFSKAKNLADIGSGAGFPAVFLAFLLQSNFHLFEPNPKKAAFLRT
                     LKIECELPNLHIYKEKVQEYKNTFKADIITSRALMDVKPLLEICKNLKDENTVFILWK
                     GSEIYQELENIKDYEIFENNLRRYCILK"
     gene            complement(2427..2987)
                     /gene="ribA"
                     /locus_tag="SF008_001185"
     CDS             complement(2427..2987)
                     /gene="ribA"
                     /locus_tag="SF008_001185"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HEG8233452.1"
                     /translation="MKIKISEIANLPSKWGNFQIQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLDSIKEKIITR
                     IPILIEPNRFNVEYLNIKQTQMRHLK"
     gene            3045..4028
                     /gene="hemB"
                     /locus_tag="SF008_001186"
     CDS             3045..4028
                     /gene="hemB"
                     /locus_tag="SF008_001186"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEG8233453.1"
                     /translation="MFKRFRRLRLNENLRAMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQNVVNLGIKAIILFGVLENEKKDSCGSDALDDEGLVARSI
                     REIKKNFPDLFIISDLCFCEYTDHGHCGIIDPKTKSVDNDVTLEISAKQALVHARAGV
                     DMIAPSGMMDGIITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPAFAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETMIAFKRAGAKLIITYHAKELAKMLKGEK"
     gene            4025..4945
                     /gene="argF"
                     /locus_tag="SF008_001187"
     CDS             4025..4945
                     /gene="argF"
                     /locus_tag="SF008_001187"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEG8233454.1"
                     /translation="MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVVGAMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSELYHPTQVLGDLLTIKEWNKMQNGIAKVAFIGDSNNMCNS
                     WLIAAAILGFEFSIAIPKNYKISPEIWEFAMKQALISGAKISLSHDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDEKAMSIANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVAKALLCFLDNQRGRE"
     gene            4942..5433
                     /locus_tag="SF008_001188"
     CDS             4942..5433
                     /locus_tag="SF008_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HEG8233455.1"
                     /translation="MKELEKYSTCLKRIDEFSQNLGIKKKDRTIFKMKQSESENEKCL
                     VLENGSFDSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            5420..6775
                     /gene="hemN"
                     /locus_tag="SF008_001189"
     CDS             5420..6775
                     /gene="hemN"
                     /locus_tag="SF008_001189"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEG8233456.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNTNFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILSTILDTKREVVQM
                     HFGGGTPTFFSAKQLQSLILKIRSVFGNFSKDAEISCEIDPRFLNEEQAIVLTQNGFN
                     RISFGVQDFDEKVQKEIHRIQSFELTQNALNLVRNKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEKFLSKNG
                     YKMIGMDHFAKENDELFKALENGTLHRNFQGYTTKGGADLVGIGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVALSDDDELRKAVIMELMANFKLDIKSIEKEFCIDFQ
                     EYFKEDLKALEEYKDFINFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            6777..>7652
                     /locus_tag="SF008_001190"
     CDS             6777..>7652
                     /locus_tag="SF008_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEG8233457.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLAAYK
                     EGSLELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENTGMKARFSMPFVKKGRLLTSFNKKSF
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKITKELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKKNIEYFEKKLEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSKIYMASE"
BASE COUNT         2641 a          926 c         1430 g         2655 t
ORIGIN      
        1 tataaaaatt aaaataatat atttctataa ttttaataaa aaaaatataa taacacaaaa
       61 tttacaaaaa ggaaaataaa tgaaaacaag ttttttagca catagcgtgg ctatagtgcg
      121 atcaaatttt aagggtttgc tttttactgc ttgtatagtg atttttgcta tgtatctttc
      181 tagtgttcaa agtatcaaag ataccactca tttagcagcg actgcttttg ctattatcat
      241 aggagtgttg ctttctcctt ggttttttaa ataccaacat cattttcaag ccggagtgca
      301 ttttagtgcg aaaaaacttt taagacttgg cattgtttta tatggtttta atatcacttt
      361 aactgagctt ttaagcgtag gattgaaagg atttttgctt tctgctatag tgatattttt
      421 tgtttttatt attgctttat ttgtgggaac gaaaattttt aaactcgata aagaaacttc
      481 tatgcttgtt ggagctggaa gtgcgatttg cggtgcggca gcggttttag cactagagtc
      541 aagtttgaaa agtgatcctt ttaagggaat tttagctgta ggtacggtgg tgatttttgg
      601 acttgtattt atgttcttat atcccatagc tttttcttta aatctttttc ctttttttga
      661 tcaaaatgct atgggtgttt ttatgggagc tacgttgcat gaggtggcaa atgtcgcagg
      721 tgctgctgaa atggcaaagg atatggcagg atttgagcaa ggtgcttcta atgttgcagt
      781 gattataaaa atgatgagag tgattttact tgtgcctttt ttgcttatag tgacttattt
      841 tttcgctaaa aatcaacatt caagcagtgg aaaaactgca aaaagtatca ctatacctta
      901 ttttgctttt gcatttttag gcatgatagt tttaaatact tatttagcaa gcaaagaaag
      961 tattttaggt attgctacga gtgatatcat ctctttaggt aaaacacttt gtactttatg
     1021 tatcgttttt gctatggcag ctttaggctt gcaaattgac tttaaaaaat ttttaaaaag
     1081 tggctctagg gtatttggct tggcttttgt tttagggctt gttttggttt ttggaggata
     1141 ttttttaacc ttagctttta aaggtatact ttggtaataa aaattatttt ttattttaga
     1201 aaattttatt ttattaatca actaagaata taatttaatt cattaattaa atttattaaa
     1261 aaggaataaa gatgaaaaaa attcttgtaa gtgttttaag ttcttgcttg ttagcttcgg
     1321 ctttaagtgc tgtatctttt aaagaagata gtttaaaggt ttcttttgaa ggatataaaa
     1381 ctaaagatat gataggaaca aaaggtgaat ttaaaaatgt agaatataaa ttttctaaaa
     1441 atataaagga tttggcaagt tatcttaaag gcgctaaagc tactataaag ccaagcaatg
     1501 cttttatggg tgaaggcaat gatattataa ccaataatat cacaaaagta tttttccctg
     1561 ctttattggg agatacggat attaaagttg tttttcaaga tgtgattgcg ggtgaaaata
     1621 aaggcgttat ttcagcaaaa attactatgg ataaaaaaag tactattgta cctttaactt
     1681 ataccatcaa agataataaa tttgaagcta aaggacaact tgatttgcat acttttaaaa
     1741 atggttctaa agcattaaaa gcattaagcg atgttgctgc aggacatggt ggaatttctt
     1801 ggcctttagt ggatatcagt tttaatgctg atttagcaga ataaaaagta gccttagggc
     1861 tactttaaaa tacaatatct tcttaaatta ttttcaaaaa tttcataatc ttttatattt
     1921 tcaagttctt gataaatttc actacctttc cataaaataa aaactgtatt ttcatctttt
     1981 agatttttgc aaatttcaag caaaggcttg acatccatta aggctcttga agtgatgata
     2041 tcagctttaa aggtattctt gtattcttga actttttctt tgtaaatatg taaatttgga
     2101 agttcacatt ctatttttaa tgtccgcaaa aaggcagctt ttttgggatt gggttcgaaa
     2161 agatgaaaat tgctttgcag taaaaaagct aaaaatacag ctggaaatcc tgcgccactt
     2221 cctatatcgg caagattttt tgctttagaa aaatcataaa aatctaaaat tttaatacta
     2281 tcaaagatat tttcatctat attttttaaa tgagtaagat tgtgaatgcg gttaaattta
     2341 gataataatt ctttataaat ttttaccttt tcttcaaagt tttttaaatc gtagttttgc
     2401 aaaaaatcat aatctttaaa aatcatttat ttaagatgtc tcatttgagt ttgttttatg
     2461 tttaaatact ctacattaaa acgattaggt tctattaaaa tcggtatgcg tgtgatgatt
     2521 ttttctttga tagaatctag cttttcaggg ttatttgtga gtaaattaac cttagaaatt
     2581 tcatagtgtt tgagtataaa ttctacaatt tcataagttc tctcatcggc tttaaagcca
     2641 agctgatgat ttgctttaat cgtatcaaaa cctttatctt gtaaagcata agcattaacc
     2701 ttgttaaaaa gccctatacc ccttccttct tgcctaagat aaatcaccat tccgccattc
     2761 ttttctatat attttagtga aaattcaagc tgttccccac aatcacactt taaacttcct
     2821 aaagcatctc ctgttaagca ctctgaatga attcttagat tgagtgtgtc ttttggagta
     2881 tttttaaata tacataaatg ttctttatca ttttctttga aactttgtat ttggaaattt
     2941 ccccatttgc taggtaaatt cgcaatttct gaaattttta ttttcattta ctactctcta
     3001 taatcaaatt tatgttaaga ttttagcaaa aaaaggacaa aaaaatgttt aaaagattta
     3061 gaagattaag gcttaatgaa aacttaagag ccatggtaag agaaaattct ttaagtgtaa
     3121 atgatttgat ttatccgctt tttgtggtta atggaacggg gataaaaaaa gaaatttctt
     3181 ctatgcctga tgtgtttcaa atgagtttag atgaaatttt aaaagagtgt caaaatgtag
     3241 ttaatttagg cattaaagcc attatacttt ttggcgtttt ggaaaatgag aaaaaagaca
     3301 gctgtggaag cgatgcttta gatgatgaag ggcttgttgc aagaagtata agagagatta
     3361 agaaaaattt tccagatctt tttataatca gtgatctttg tttttgtgaa tacacagatc
     3421 acgggcattg tgggattatc gatccaaaaa caaaaagtgt ggataatgat gtcactttag
     3481 aaatttcagc caaacaagcc ttagttcacg caagagcagg ggtagatatg atagcaccta
     3541 gtggaatgat ggatggtatt atcactactt tgcgcaaagc tttagataaa gaaggttttg
     3601 aaaatttgcc tataatggcg tattctacta aatttgcttc aagttattat gggccatttc
     3661 gagatgtagc agaatcagct ccaagttatg gagatagaaa aagctatcaa atggattttg
     3721 ctaatggtaa agaagcttta gaagaaagct tggaagatga agcacaagga gctgatattt
     3781 tgatggtaaa acccgctttt gcttatcttg atgtggttaa agaaatatcc cttcattcta
     3841 acttgccttt gtgtgtttat aatgtaagcg gagagtatgc tatgttaaag gcagctaaaa
     3901 atgcaggagt gattgattat gaaaaagttt tgtatgaaac tatgatagct tttaaaagag
     3961 caggggcaaa gcttatcatc acttatcatg ccaaagaatt agctaaaatg ttaaaaggag
     4021 aaaaatgaaa cattttttaa ctttaagaga tttttctaag gaggaaattt taagccttgt
     4081 aaatcatgct agcgagttaa aaaaagagcc taaaaaactt ttacaagata aaactttagc
     4141 aatgattttt gaaaaaaact ctacaagaac aagaatggcc tttgaattag ccataacaga
     4201 gcttggcgga aaggctttat ttttaagtag caatgattta caacttagtc gtggcgagcc
     4261 tgtaaaggat acagctaggg tggtaggggc gatggttgat tttgtgatga tgagagtcaa
     4321 taaacatgaa actttactcg aatttgcaag atattctaaa gcccctgtga tcaatgcttt
     4381 aagcgagctt tatcacccta ctcaggtttt aggagatttg cttactatca aagaatggaa
     4441 taagatgcaa aatggtatag caaaagttgc ttttatcgga gatagtaaca atatgtgcaa
     4501 ttcttggctt attgcggctg cgattttggg ctttgaattt agtatagcta taccaaaaaa
     4561 ctataaaatt agccctgaaa tttgggaatt tgctatgaaa caggctttga tttcaggagc
     4621 taaaatttcc ttaagtcatg ataaatttga agccttaaag gataaagatg tagtcattac
     4681 cgatacttgg gtttctatgg gtgaagagaa tgaaaaagaa cgcaagatta aggaatttga
     4741 aggatttatg atcgatgaaa aggctatgag cattgcgaat aaagacgcga tattgcttca
     4801 ttgtttgcct gcttatagag gttatgaagt gagtgaagaa atttttgaaa aacatgcaga
     4861 tgtgattttt gaagaagcaa gaaatcgcct ttatgtggca aaagccttgc tttgcttttt
     4921 ggataatcag agaggaagag aatgaaagag ctagaaaagt atagcacttg cttaaagcgc
     4981 attgatgaat ttagtcaaaa tctaggaata aagaaaaaag atagaacgat ttttaaaatg
     5041 aagcaaagcg agagtgaaaa cgaaaaatgt ttagttcttg aaaatggaag ttttgattct
     5101 cctgagcctt ggtttgtgat agatgaaaac gatgaaattc acactttgct ttctttacaa
     5161 agtcttaaga atatacttga aagtttaaaa caaagtcaaa aagagaattt tgaattgcgt
     5221 ttagaaaagg cgatttatca acaaattcct gtagatttta acgatgtttg gacggttgcc
     5281 atggatgaga tcaagcaaaa ggcacaaaat ggtactatgg aagttagtat tgatcttgaa
     5341 aaattaattt ctaaaatcaa acaagagcat ccaaatttat ttgtagatat gcaagcgatg
     5401 atagaaaggg taaaccaaaa tgagagatta taaagctttt gtaaaatact ctaaagcagg
     5461 accacgctat acttcttatc ctacagcagt agagtttaat acaaatttca aatacgaaga
     5521 atatatagaa attttaaaaa aacaagatag atctttatcg ctttattttc atttaccatt
     5581 ttgtaggagt gcttgttatt tttgtggttg caatgtcatc tatactgcaa aagaagagag
     5641 taaagaaagg tatttaactt atatttttaa agagcttgat attttaagta ccattttaga
     5701 tactaaaaga gaagtggtgc aaatgcactt tggtggcgga actccaactt tttttagcgc
     5761 taaacaactt caaagtttga ttttaaaaat cagatctgtt tttggaaatt tttctaaaga
     5821 tgcagagatt agctgtgaga tcgatccgcg ttttttaaat gaggaacaag ccatagtttt
     5881 aacgcaaaat ggctttaatc gtatcagctt tggagtgcag gattttgatg aaaaagttca
     5941 aaaagaaatt catcgcatcc agtcttttga attaacacaa aatgctttaa atcttgtaag
     6001 aaataaaggc ataaagtctg taaatatgga tttaatttat ggtttgcctt atcaaaattt
     6061 acaaagcttt acacaaactt tagaaaaagt tatgctttta aaccctgatc gtttggcgat
     6121 ttttaattac gctcatgtgc cttggcttaa gaaaaatatg agaaaatttg atgaaaatac
     6181 cttgccaagt cctgatgtta agcttgaaat tttagaattt tgtgagaaat ttttaagcaa
     6241 aaatggttat aaaatgatag gaatggatca ttttgcaaaa gaaaatgatg agctttttaa
     6301 agctttagaa aatggaactt tgcatagaaa tttccaaggt tatactacca aaggcggtgc
     6361 tgatttagtc ggtattgggc ttacaagtat aggcgaaggg caaagacatt atgcgcaaaa
     6421 ttttaaagat atgtcaagtt atgaagctgc attagataga ggagttttgc cttttgaaag
     6481 aggcgtagct ttaagcgatg atgatgagct tagaaaagca gtgattatgg agttaatggc
     6541 aaattttaag cttgatatca agtcaataga aaaagaattt tgcattgatt ttcaggagta
     6601 ttttaaagag gatttaaaag ctttagaaga atacaaagat tttattaatt ttgatgaaaa
     6661 ttttatcaaa gtcaatgaaa caggcgtttt gcttataaga aatattgcca tgtgttttga
     6721 tgcttatatg aaaaacatta gtgaagataa aaaagtattc tcaaaaacgg tgtaagatga
     6781 aatttagtca aataagtgat gcttgtgtta aatgtggcaa atgtatacct gtttgtacta
     6841 tacatgaaga aaatcgcgat gaaattacta gtccaagagg atttttagat cttttagctg
     6901 cttataaaga gggaagttta gaacttgata aagaagctaa gaaagttttt gaatcttgtt
     6961 ttttatgcac caattgtgtt gaagtatgtc caagtaaatt aagagtagat aatgccatag
     7021 aagaagttcg ttatgatata gctaaaaaat ttggtatagc ttggtataaa aaacttattt
     7081 ttttcttttt aagaagacgc aaaattttag atttggtagc taagcttggc tatgtgtttc
     7141 aaagttgtgc gtttaaaatt caaaatgaga atgaaaatac aggtatgaag gcaagatttt
     7201 ccatgccttt tgttaaaaag ggaagattac ttacaagttt taataaaaaa agtttcttaa
     7261 attctaatcc aaaatttatc aataatgatg gagaaaaaac aataggtttt tttgtaggtt
     7321 gtttggcgaa ttatttttac atagatacgg ctaatgcagt gcttaaaatc actaaggaat
     7381 taaaaatcaa tgtggatttg atgaaagaac aagtgtgttg tggagcaccg caatttttta
     7441 cgggtgattt taaaagtgtt gaagttttgg ctaaaaaaaa tattgagtat tttgaaaaaa
     7501 aattagaaaa attagatgct attatagttc ctgaggccac ttgttcggct atgttaaaga
     7561 tagattatga acattttttt ataatgcaaa atgatttaga ctgggcaaaa cgcgcaaaat
     7621 gtgtgtcatc taagatatat atggctagcg ag
//
LOCUS       DARGEY010000063         7428 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.063, whole genome shotgun sequence.
ACCESSION   DARGEY010000063 DARGEY010000000
VERSION     DARGEY010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7428
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.063"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..187)
                     /locus_tag="SF008_001191"
     CDS             complement(<1..187)
                     /locus_tag="SF008_001191"
                     /inference="COORDINATES: protein motif:HMM:NF014651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HEG8233458.1"
                     /translation="MVFKNNSKLQYTALKLLSSSNEDDKLIASDFTSLFLSDVDYVKA
                     PPFASFYLDENKEIYSDN"
     gene            complement(284..655)
                     /locus_tag="SF008_001192"
     CDS             complement(284..655)
                     /locus_tag="SF008_001192"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233459.1"
                     /translation="MFIIVFFENSKHERKMSFFTGLIGIGLLNTAIVLQTLHVGQTWI
                     MGLVNPFELLGGTYDWFISLSFAFLGLGTVTWYLHNYLHEKFKSKFFAYFALLCAFLG
                     VFTTRMLFYGLISTQIMLGHS"
     gene            complement(662..991)
                     /locus_tag="SF008_001193"
     CDS             complement(662..991)
                     /locus_tag="SF008_001193"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233460.1"
                     /translation="MMVAFIPSFFHLNDITHIFNVLNRMGVFYANNEWHIGWMNNEIL
                     FVSLVCALGFLLYLKTSNWVFYLTLICGILGLFFMSGAYMAPCKKVCLLGILRSLCFI
                     FLLVLYF"
     gene            complement(988..1152)
                     /locus_tag="SF008_001194"
     CDS             complement(988..1152)
                     /locus_tag="SF008_001194"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233461.1"
                     /translation="MTSFNHILSEMPLVLFTILAQAVIGLSLVYAPAFINGYKNYANL
                     KSFGLALELQ"
     gene            complement(1139..1795)
                     /gene="dmsB"
                     /locus_tag="SF008_001195"
     CDS             complement(1139..1795)
                     /gene="dmsB"
                     /locus_tag="SF008_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
                     /protein_id="HEG8233462.1"
                     /translation="MKLEENSQFGVMLDQSKCVGCRTCSLSCKDYKNMPVGVNFRRVF
                     ETEGGNWTCKEDGSFEQNVFAYYTSISCNHCSNPSCLKACPTGATMKIKWGIVAIDDS
                     MCIGCKACAMACPYGAPQFNHESGHMSKCDGCYERLKEGKNPICVDSCPFRTLKAGDI
                     TKLREEHGNLASITPLPDASITHPNLCIVPEKHSLPSGNKSAIFHLPQNYQGVKNDII
                     "
     gene            complement(1806..4127)
                     /locus_tag="SF008_001196"
                     /pseudo
     CDS             complement(1806..4127)
                     /locus_tag="SF008_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009883064.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
     gene            4463..5998
                     /locus_tag="SF008_001197"
     CDS             4463..5998
                     /locus_tag="SF008_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8233463.1"
                     /translation="MLRFLIFAMLLFVNLEAKIPKDTLIIAVENEIARINPAYSEDHD
                     AVINLVFSGLTRFDEHMSLKPDLAASWNVSKDGLSYDIFLREDVLWHDGVKFSADDVK
                     FSLEAFKNPKNNSSIYVNFEDIKSIEILNPYHLKITLSKPFPAFLDALSIGMLPKHLL
                     SDKDLNTASFNQNPIGTGPYKFVKWKKGEYVEFKANENFYLTKVKTPRLIIKHIFDPS
                     VASVELKNGKIDAALIDVSLLNIFKKDENFKILRERSADYRALMFNLENEFLKDIQIR
                     KALNYAIDKQSIVKNLLHDYGFVANHPLERSWADSKAFKTYEYNPKKAQDLILALGFK
                     KNDEGIFEKDGKILEFEIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYS
                     KVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTSN
                     LEERKKYYKDFIDALYENPPFIFLAYLDFALVYNKDLKGIKARTLGHHGVGFTWNVYE
                     WSK"
     gene            5998..6942
                     /locus_tag="SF008_001198"
     CDS             5998..6942
                     /locus_tag="SF008_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8233464.1"
                     /translation="MLKRLVFSIVVAFFSTFLCFVLLHFSKGSIAYANGVNSQSKEFV
                     QRIEQNLGLDKPLLEQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSAL
                     MLLFLLSVFLALLGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYEGLGSLLFKSIIFKDY
                     PVVLALIFFSVLLATFFTFLSDIVARILNPRLRRLDFV"
     gene            6929..>7428
                     /locus_tag="SF008_001199"
     CDS             6929..>7428
                     /locus_tag="SF008_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8233465.1"
                     /translation="MILFKFLIILAPLIFLFLCALFAPFLAPFDILSTHLENLHQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRT"
BASE COUNT         2307 a         1135 c         1200 g         2786 t
ORIGIN      
        1 aattatctga ataaatttct ttattttcat caagataaaa agaagcaaaa ggcggtgctt
       61 ttacataatc aacatcgctt aaaaacaaag atgtaaaatc acttgctatt aatttatcat
      121 cttcgtttga agatgataaa agctttaaag cggtgtattg caatttgcta ttatttttaa
      181 aaaccaattt tgccagaatt cttctttttt aagtttttct agcaaaaaat gattaggtgg
      241 attttgcaaa aattgataaa tatatctatt gccaattttt gcattaagaa tgtcccaaca
      301 tgatttgagt acttataagt ccataaaata gcattctggt ggtaaatacc cctaaaaatg
      361 cacaaagtag ggcaaaataa gcaaaaaatt tacttttaaa tttttcatgt aaataattat
      421 gcaaatacca agtaacagtc ccaagtccta agaatgcaaa agaaagcgat ataaaccaat
      481 cataggttcc acctaaaagt tcaaaagggt ttacaagccc cataatccaa gtttgtccta
      541 catgtagggt ttgcaaaact atagcagtgt ttaaaagccc tatacctata agtcctgtaa
      601 aaaacgacat ttttctttca tgtttgctat tttcaaaaaa aacaataata aacaatagcg
      661 cctaaaaata tagcactagc aaaaaaataa agcaaagtga tcttaaaatc ccaagtaggc
      721 acactttctt gcatggagcc atataagctc cactcataaa gaaaagtcct aaaattccac
      781 atattagcgt aagataaaac acccaatttg aagtttttag ataaagcaaa aagcccaaag
      841 cacacacaag agatacaaat aaaatttcat tattcatcca gcctatgtgc cactcattgt
      901 ttgcataaaa aacacccatt ctatttaata cattaaaaat gtgtgtaata tcatttaaat
      961 gaaaaaatga agggataaaa gcaaccatca ttgcaattct aaggctaatc caaaagactt
     1021 taaatttgca taatttttgt aaccatttat aaatgcaggt gcataaacca aactaagtcc
     1081 aattacagct tgtgctaaaa tagtaaataa caccaaaggc atttcgctta aaatgtgatt
     1141 aaatgatgtc atttttaact ccttggtagt tttgaggtag atgaaaaatc gcacttttat
     1201 tacctgaagg caaactatgt ttttcaggca ctatacataa attcggatgc gtgatagaag
     1261 catcaggtaa aggtgtgata gaggctaaat ttccatgttc ttctctcagt tttgttatat
     1321 cgcctgcttt taatgttcta aaaggacaag agtccacgca aattggattt ttaccttctt
     1381 ttaatctctc ataacaccca tcgcatttgc tcatatgacc actttcatgg ttaaattgag
     1441 gtgcgccata aggacatgcc atagcacaag ctttgcagcc tatacacata ctatcatcga
     1501 ttgctactat tccccatttt attttcattg ttgcaccagt tggacaagct ttaagacaag
     1561 atggattaga acaatgattg caagaaatag aagtgtagta agcaaaaaca ttttgctcaa
     1621 aacttccatc ttctttacag gtccaatttc ccccttcagt ctcaaacaca cggcgaaaat
     1681 taactcccac aggcatgttt ttataatcct tgcaagaaag tgagcaagtc ctacagccta
     1741 cgcatttgct ttgatctagc ataacaccaa attgtgaatt ttcttctaat ttcatctttt
     1801 tctccttaaa cttttgcaat ttcaactaaa atagaatgtt gtccatttcc tttagaaata
     1861 gcagttggta ctatacttgc caaagaattc acacaagttc ccacatcgat accattttca
     1921 tattttgccc atgcaccttg tggggttact gcacaacctg gtatgatttt tggagtaatt
     1981 tttgctatgc cttgtatgat tcctaagtca tttcttactt gcaccacatc gcccgttttg
     2041 atacttcttt gctctgcatc tatggtattt atccaaattt cttgtggatt agcttctcta
     2101 atttgtggaa tttcccaaaa gctagaatgc gttctacctt tgtagtgata gccaaaaaat
     2161 tgcaaaggat acttttgttt taatggatct aaaatccctt ctctttggct ttcaaaaaca
     2221 ggaataggta ctatttgttg tccttctttt aatttccaag ttttttgcat ttgtgcgagt
     2281 tttgtgctat aaatttctat ctttccgcta ggagttttta aaggattatt gataggatct
     2341 tttataaaac tttgtaatgc cactacaggt tttacaggct caaattttac aagtcctttt
     2401 tcgcacattt cttcaaaact aggcaaaagt ggattttttt tcatactttc ttcataaagg
     2461 tattttagcc aatctttttg tgttcttcct tcgctaaatt ctttttctat gccaagtctt
     2521 ttagcaagtt caagacacat tttataaata ggttttgctt caccaactgg ctcgatagct
     2581 ttttgacaat aaataatata aggcttattg ctataatatc ctgcgctagg tcttataaaa
     2641 tcttcttgct ctagcatagt tgcatcaggt aagatataat ctgcgtagtt atttgacgga
     2701 gttctagtta cattaacatc tattatacac tcacacaaat tctcatcgct taaaatatca
     2761 tgcacttctt taattgtgct gtgctgattt gtaagacaat ttcctgctgt attgaaaata
     2821 aattaatatt ttgttttaat tgtgttgtgc cacgcacccc atcgctaata tctgtcattt
     2881 cttttccacg ataaatagca tctgtgaata aaaaacaagg aatagaatct tttattggat
     2941 ttttaaaagg catacctatt atatcatatg ttttacttga ccctgttcga catcctgtat
     3001 ttgtgccttc tatgccaata tttcctgtaa tacaagctag agttgctatc gcccttgcat
     3061 tttgttctcc atttgaatgt ctttgcactc cccaaccttg ttctataaaa caaggcttta
     3121 tggtggcaat ttctcttgca agttgaacta tgcggcgtgc tggatttttg taatcttgct
     3181 agcccaatca ggagtttttt ctactccatc gtttagtcct aaacatagct ttcatagctt
     3241 gagtttttgg ctgcatcttg tggcagagta ttttcgctaa agcctatggt gtatttatca
     3301 agaaaagttc tatcaagtaa atcttctttt atcatcacat aagttagcgc agcaattaaa
     3361 gctgcatcgg ttcctggtgc tataggtatc cactcattgc aatgccctat catagaatca
     3421 ttgtatcttg ggtcaatgtg aattatttta catccacttt cttctaaggc tttttgataa
     3481 gcatagccta ctccaccacc tcccattcta gtttcaacat gatttgctct aaaaaatata
     3541 gctaattttg cagagtgtaa agtgtatata tcgctagcag gagatccacc atagaaaaaa
     3601 ttcatagcat ttgaaatttg agccgtagaa taagaattat gataatttaa ataaccacca
     3661 taaagactta aaagtctagc ccatggacct tgtgtacagc gattgattat tgttcctgtt
     3721 gttcctgttg cataatttat ataaaaggct tcattgccgt atttttcttt aatttcttgc
     3781 attttggcag aaatttcatc aaaagcttgt tcccaagaaa taggcataaa tttaccttcg
     3841 cctctttttc ccactctttt taatggtctt tttaagcgat ttgcattgta aactttatat
     3901 cttgaactac gccctctaat acaggctctt gcttgacgat tatcaaagct atcatcacct
     3961 tcatgatcag tactaacata tttaataatt ccatcttgag tatgcacttt tacaggacat
     4021 tttgtttcgc aatttacatt acatccagcc catttgctga tcaatggtgg agtttttaat
     4081 aaatttgcac ttagacttat aggacttaag gttaagccgc caaacaaaga actccatttt
     4141 aaaaaatctc tacgattttg ttccgtgtta tctccttaca tttatgtgac aaaaagtaat
     4201 tgcgattata gtacaaataa taattttatt caattaaaat taagacttta aaactcctaa
     4261 atataggctt tataatgaat ttttcgttta tgaatttaac ttcaaaaaat aaaaatttga
     4321 ataatataat gataaaaatt tattaaaata gtatttaaat ataaatttat aactaaaata
     4381 taactttatc ccccgtatag gcttgcgagt tgagtttttt tgttttataa ttttgtgcgt
     4441 tattaaaata aaaaggtttt ttatgttgag atttttaatt tttgcaatgt tgttgtttgt
     4501 gaatttagaa gcaaaaatcc caaaagatac acttattata gcagttgaaa atgaaatcgc
     4561 aaggataaat cctgcttata gtgaggatca cgatgcagtg attaatcttg tattttcagg
     4621 acttacgcgt tttgatgagc atatgagctt aaagcctgat ttagctgcgt cgtggaatgt
     4681 tagcaaggat ggacttagct atgatatctt tttgcgtgaa gatgttttgt ggcacgatgg
     4741 agtgaaattt agtgccgatg atgttaaatt cagtcttgaa gcttttaaaa atcctaaaaa
     4801 taattcttct atttatgtga attttgaaga tattaaaagt atagaaattt taaatcctta
     4861 tcatcttaaa atcacgcttt ctaaaccttt tcctgcattt ttagatgctt taagtatagg
     4921 aatgcttcct aaacatttac ttagtgataa agacttaaat actgcttctt ttaatcaaaa
     4981 tcccataggc acaggtcctt ataaatttgt aaaatggaaa aagggcgaat atgtagagtt
     5041 taaagctaat gagaattttt atcttacaaa agtaaaaacc ccaagactta tcatcaaaca
     5101 tatttttgat ccttcggttg caagcgtaga gcttaaaaat ggcaaaattg atgcggcttt
     5161 gattgatgtt tctttattga atatttttaa aaaggatgaa aattttaaaa ttttgcgtga
     5221 aagatctgct gattatagag ctttaatgtt taatttagag aatgaatttt taaaagatat
     5281 tcaaataaga aaggctttaa attatgctat tgataagcaa agtatagtca aaaatctttt
     5341 gcatgattat ggttttgtag ccaatcatcc tttagagcgt tcttgggcgg attctaaagc
     5401 ttttaaaact tatgaataca atcctaaaaa agcccaagat ttgattttgg ctttaggttt
     5461 taagaaaaac gatgagggta tttttgaaaa agatggcaag attttagaat ttgaaatttg
     5521 ggcgatgagt aatgatcctt taagggtaag tttggctgga attttgcaaa gcgaatttag
     5581 aaaaatagga gttgtaagca aggtggtggc taaacctgct ggaagttttg attattctaa
     5641 agtagatagt tttttaatag gctggggaag tcctttagat cctgattttc acacttttag
     5701 ggtatttgaa agttcgcaag atagtgcttt aaatgatgag ggttggaatt ttggacatta
     5761 tcatgataaa aaagtggata tagccttgca aaaagcaaga aacacttcaa atttggaaga
     5821 gagaaaaaaa tattataaag attttataga tgctttgtat gaaaatcctc cttttatttt
     5881 tttagcctat cttgattttg ctttagttta taataaagat ttaaaaggta tcaaagcaag
     5941 gactttaggt catcacggag tgggttttac ttggaatgtt tatgagtgga gtaaatagtg
     6001 ctaaaacgct tagtttttag tattgtcgta gcatttttta gcactttttt atgttttgtt
     6061 ttacttcatt ttagtaaagg cagtatagct tatgctaatg gagttaattc acaaagtaaa
     6121 gaatttgttc aaagaataga acaaaattta gggcttgata agcctttgct agagcagtat
     6181 aaaatttggc tttttaaggc tttaaaagga gatttaggag tttctttttt aagtggagaa
     6241 agtgttttaa agcttataaa agaaagaatt tttaatactt ttattttggg ttttagtgcc
     6301 ttaatgcttt tatttttact cagtgttttt ttggcacttt tgggatatta ttataaagaa
     6361 agttttatag ataaaatcat cactttttta gcttttaatt tttttgcttt acctcctttt
     6421 gttttggctt tattgtttgt tttgattttt ggaatttttt ggaaaatttt gcctgttatg
     6481 ggaagtagtg atataggctt tgaagatgat tttttaaatc gtttagagca tttgattttg
     6541 cctgttttgg tgctcgtttt atcacatttg gcgttatttt taaggattgc tagaaatttt
     6601 atcaatgaaa gtttttctca aatttttatt caaaatttat acgctagagc tttaagggag
     6661 aaagatattt attttttagt tttgaaatat tctttaagtc ctattgtggc ttattttggg
     6721 ggaagtgctt taagttttat gatgggaact tatgtggtag aaagtgtctt tgcttacgag
     6781 gggcttgggt ctttactttt taaaagtatt atttttaaag attatcctgt tgtacttgca
     6841 cttatatttt ttagcgtttt gcttgcaaca ttttttacat ttttaagtga tattgtagct
     6901 aggattttaa atcctagatt aagaaggctt gattttgttt aaatttctta tcattcttgc
     6961 gcctttaatt tttttgtttt tatgcgcctt gtttgcacct tttttggctc cttttgatat
     7021 tttaagcact catttagaaa atttgcatca agctcctaat tttacttata ttttagggac
     7081 tgatttttta ggcagagatt tgttttctcg tttgcttttt gctttgagaa attctttgat
     7141 tataggtgtt ggtggatctt tattgtctat tatctttgct ttgtgctatt tgtttttagc
     7201 gcgatgtttt ttttacgttt tttggatgcg tattttagag ttttttttag ccttgcctgc
     7261 ttttttactt atgatgtttt ttcaaagtat gataacttct gatgtgtttt tgatgatttt
     7321 tttaatcgct ttaattcatt ggtgtttcat agcaagaatt atagaaagtg aattaaaaag
     7381 acttgaaaat ttagattttt acaaagcaaa tatagtgctt ggaagaac
//
LOCUS       DARGEY010000064         7392 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.064, whole genome shotgun sequence.
ACCESSION   DARGEY010000064 DARGEY010000000
VERSION     DARGEY010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7392)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7392)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7392
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.064"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..95
                     /locus_tag="SF008_001200"
     CDS             <1..95
                     /locus_tag="SF008_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEG8233466.1"
                     /translation="LKFPNHSKEFYTFIEHFMSDFRQREKEFLS"
     gene            137..1657
                     /locus_tag="SF008_001201"
     CDS             137..1657
                     /locus_tag="SF008_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233467.1"
                     /translation="MTLDFDFIYNADNDIFEYLLRFYAKNYNYILSKEENTYHFSIDA
                     DEENLKTFCDSLNFMSHSVFLKKFDVKAGQGFNPCIPEDKEFSRFSYITHLNSNAYQE
                     KKLLNKNEWGVFCECEFSSNLSEFEKINEENFNTFLNLAFDLLSQEKKIYLKDKNGIY
                     EFSLFKNEFIGDFLLPCDIKAINSVFVCSNENLKLLASLEKPLMKLRLNAMFRKNHNL
                     DFSDFKIRLARDLFCFALGLKLFENEYKFLSVKKIEEYQKDFYISALDEQVVVLEGFE
                     FINAKARELIFSKEDKNMARISYLVSRYKENAFILELSKDDEDILLINKELNLLKLCL
                     PKHSKELYEEIKKDEIGARLLENFSKEFPLLDESFELQNNFYSLLGLVGRVLNLGKNL
                     QESVSELLKIADESKMPRGVKIDYRLKEDKSFDYTRTLRSAMSFMLAGVDSANIAYGA
                     VESLAYFLRDTYDELREKKQSDLALISGSLFEHKSLLKNTLKHLKNCQLSDVPLRV"
     gene            1638..3827
                     /gene="hypF"
                     /locus_tag="SF008_001202"
     CDS             1638..3827
                     /gene="hypF"
                     /locus_tag="SF008_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HEG8233468.1"
                     /translation="MCHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGVE
                     IILACAQKECENFIENLKNHLPPLARIDKLIMTQISISNYENFSITPSLENTKSTPML
                     SDFALCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRINTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFMQSAKFLKEGKILA
                     IKGMGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFEGSLVATSANLSGESI
                     VKDEFNLCQKLDGVFDFYLDYDREIINASDDSIVQVVNGKTMFLRTSRGLNPFYLERN
                     FNKKATFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPHFSYAKEFEERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGY
                     GEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLEDKAKDF
                     LAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYD
                     KNLDFSYKFFVEKGQVNFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLL
                     SGGVFQNKTLLEILKAKNFDFFIPLKYPCNDSSIALGQMVHFLNLEK"
     gene            3905..4648
                     /gene="hypB"
                     /locus_tag="SF008_001203"
     CDS             3905..4648
                     /gene="hypB"
                     /locus_tag="SF008_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HEG8233469.1"
                     /translation="MCKDCGCSINSSHTHGHHHDHHHENPSLKESKTIEVISKILSKN
                     DEEAKHNRAHFNEANTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     ALRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSITEGSDKPQKYPVMFKKADIVLITKVDLAHHFDFDIKEATRLIKELNP
                     RADIITLDAKNGTNMELWYKVLKLKKELF"
     gene            4648..4929
                     /locus_tag="SF008_001204"
     CDS             4648..4929
                     /locus_tag="SF008_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HEG8233470.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            4913..6004
                     /gene="hypD"
                     /locus_tag="SF008_001205"
     CDS             4913..6004
                     /gene="hypD"
                     /locus_tag="SF008_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HEG8233471.1"
                     /translation="MNFIDEFRDKESILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKVIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCAVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNA"
     gene            6001..6975
                     /gene="hypE"
                     /locus_tag="SF008_001206"
     CDS             6001..6975
                     /gene="hypE"
                     /locus_tag="SF008_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HEG8233472.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEANVKSDCKALDKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDGLKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            6975..7319
                     /gene="hypA"
                     /locus_tag="SF008_001207"
     CDS             6975..7319
                     /gene="hypA"
                     /locus_tag="SF008_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HEG8233473.1"
                     /translation="MHELSIVESLIELCEENALNNKAYNVQEIYVKIGRLSGVEVDLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDQTSILEENVFKCPKCQSIEYKITQ
                     GGDLHLMRLVME"
BASE COUNT         2601 a          863 c         1432 g         2496 t
ORIGIN      
        1 atttaaaatt tcccaatcat agcaaagaat tttatacttt tatagagcat tttatgagtg
       61 attttaggca aagagagaaa gaatttttaa gttaaaaatg ttatatttat agtttatttt
      121 tcaaaaaagg cataatatga ctttggattt tgattttatt tataatgcag ataatgatat
      181 ttttgaatat ttattgcgtt tttatgcgaa aaattacaat tatatcctta gtaaagaaga
      241 aaatacttat catttttcta tcgatgcaga tgaagaaaat ttaaagactt tttgcgattc
      301 tttgaatttc atgagtcata gcgttttttt gaaaaaattt gatgtaaaag cggggcaggg
      361 ttttaaccct tgtataccag aagataaaga attttcaaga ttttcttata ttactcattt
      421 aaattctaat gcttatcaag aaaaaaaact tttaaacaaa aacgaatggg gcgtgttttg
      481 tgagtgtgaa ttttcaagca atttatcaga atttgaaaaa atcaatgaag aaaatttcaa
      541 tactttttta aatcttgcct ttgatttgtt aagtcaagaa aaaaagattt atttgaaaga
      601 taaaaatggt atttatgaat tttctttgtt taagaacgaa tttataggag attttttact
      661 tccttgtgat attaaggcta taaattcagt ttttgtttgt tcaaatgaaa atttaaaact
      721 tcttgcaagt ttagaaaaac ctttgatgaa gctaaggctt aatgctatgt ttagaaaaaa
      781 tcacaatctt gattttagtg attttaaaat tagacttgct agggatttat tttgttttgc
      841 tttaggtttg aaactttttg aaaatgagta taaattttta agcgtaaaaa agatagaaga
      901 atatcaaaaa gatttttata tcagtgcttt agatgagcaa gtggtggttt tggaaggctt
      961 tgaatttatc aatgctaagg caagagagct tattttttct aaagaagata aaaatatggc
     1021 aagaatttct tatcttgtaa gccgttataa agaaaatgct tttattttag agctaagtaa
     1081 agatgatgaa gatattttgc ttatcaacaa agagcttaat ttacttaaac tttgcttacc
     1141 aaaacacagc aaagagcttt atgaagagat taaaaaagat gaaattggtg caaggctttt
     1201 agaaaatttt agcaaggaat ttcctctttt agatgaaagt tttgaacttc aaaataattt
     1261 ttattctttg cttgggttag taggtagagt gttaaattta ggtaaaaatt tacaagagag
     1321 tgttagcgag cttttaaaaa tcgctgatga gtcaaaaatg cctcgtggag taaagattga
     1381 ttatcgtttg aaagaagata aaagttttga ttatacaaga actttaagat ctgccatgag
     1441 ttttatgtta gcaggtgtgg atagtgctaa tatcgcttat ggagcggttg agagtttggc
     1501 ttatttcttg cgtgatactt atgatgaatt aagagagaaa aagcaaagtg atttagcgct
     1561 tataagtgga tctttgtttg aacataaatc tttgcttaaa aatactttaa aacatcttaa
     1621 aaattgtcag ttaagcgatg tgccacttag ggtataagat caaaatttca ggcttggttc
     1681 aaggggtggg ttttcgtccc ttagtttatg aactagctct gaaatcaaag ctttttggag
     1741 aggtaagaaa tgatggtttt ggggtagaaa tcatccttgc ttgtgctcaa aaagaatgtg
     1801 aaaatttcat agaaaattta aaaaatcatc ttccaccttt agcaagaata gataagctta
     1861 taatgacgca aatttctatt tcaaactatg agaattttag cattactcct tctttagaga
     1921 atacaaaaag cacgcctatg ttaagtgatt ttgcgctttg taaggagtgt aaaaaagaat
     1981 tttttgatga aaaaaatcca cgctttttat atccttttat cacttgcacg cattgtgggc
     2041 cacgctttag tattataaaa agtcttcctt atgataggat taatacttcc atgcaagaat
     2101 tattgatgtg tgagttttgc aaaagtgaat acgaagatcc taaaaatagg cgttttcatg
     2161 cccagcctat tagttgtcct aaatgcaaaa tcaatgtttt tcttaaaaat ccaaagggtg
     2221 aaattttagc caaagatcaa gaagctttta tgcaaagtgc gaagttttta aaggaaggta
     2281 aaattttagc cataaaaggt atgggtggtt ttcatctcat gtgcgatgct tttaatgaag
     2341 aagctttaaa aactctaaga cttagaaaaa atcgccctaa aaaacccttt gctttgatgt
     2401 gtaaagattt acaaagtgct aaagaacttg cctttataga tgaaaaagaa gaagctttgc
     2461 ttggtggagt tttagctcct attgtgattt taaaggcaaa aaaagccttt tctttaattg
     2521 ctcctgatgt tgataaaata ggtattatgt tagcttatac gcctttacat cttttgcttt
     2581 ttgagtattt tgaaggaagc cttgtggcaa caagtgcaaa tttaagtgga gaaagtattg
     2641 ttaaagatga gtttaatttg tgtcaaaaac ttgatggagt ttttgatttt tatttagatt
     2701 atgatagaga aattatcaat gcaagtgatg atagcatagt tcaagtggta aatggtaaaa
     2761 ctatgttttt gcgtacttca aggggtttaa atccttttta tttggaaaga aattttaata
     2821 aaaaagccac ttttttagct ttgggtgcgg agcttaaaaa tgaatttgtg attttttatg
     2881 aaaataaact tttaatttct ccttatatag gggatttgaa aagtcttgat gtgcatgaga
     2941 gattttttaa acttttagaa ttttttaaac aaaattatga tttgaaattt gatgcgattt
     3001 tgtgcgataa acacccgcat tttagctatg caaaagaatt tgaagaaagg attaaaattt
     3061 ctcatcatta tgcgcatttt tgtgcggctt attttgaata cgaagaaaat tttgcaaaag
     3121 atgaaaaggc tttagctttt atttgtgatg gaacaggtta tggcgaagat ggtaaaattt
     3181 ggggtggaga agtttttgta ggaaatttaa aagaatatga aagaattgca cattttgaaa
     3241 atttcactct tataaatagt gatattaaaa atatacaaaa tttagcctta agtcttattt
     3301 ttcattatga tttagaagat aaggctaagg attttttagc aaaaattcca aaaattaaac
     3361 ttaaaaatct taaaaaaatt tattctcatt ctaacttaca aacaagttct ttaggacgca
     3421 ttatcgatgc ttttggaagt attgttttta acttagaaaa aagttcctat gaagctcaag
     3481 ttggcttaat gtgtgaagct ttttatgata aaaatcttga tttttcttat aagttttttg
     3541 tagaaaaagg gcaggttaat tttaaaaatt taatcctagg ggctttgcaa gatgaaaaaa
     3601 ctaaggcgat tacaggtatg tttaatgcct tggcaaattt tatcatagat tttagcaaag
     3661 attatgattt aaaagtgctt ttaagcggag gggtttttca aaacaaaacc ttgcttgaaa
     3721 ttttaaaagc taaaaatttt gattttttta tacctttaaa gtacccttgt aatgatagct
     3781 ccatagcctt aggacaaatg gtgcattttt taaatttaga aaaataaagc aaatattcta
     3841 aaaactcata attttttaat gcttttaagg ttaaaatgaa acaaaaaata tataaggaaa
     3901 gaaaatgtgt aaagattgcg gctgctctat aaattcaagc catacgcatg gtcatcatca
     3961 cgaccaccat catgaaaatc caagtttaaa agaaagcaaa accatagaag tgatttctaa
     4021 aattttaagc aaaaatgatg aagaagctaa gcacaataga gcgcatttta atgaagctaa
     4081 cacgctttgt attaatttaa tgagttcccc aggtagtgga aaaaccacgc ttttagaaag
     4141 cacgattaag gctttgaaaa atgaacttaa aattgctgtg attgaagggg atttagaaac
     4201 caataatgac gctctaaggg taaaaaatgc cggagctttg gcgtatcaaa tcactacagg
     4261 acaaagctgt catttggacg cttttatggt gcatgaggct ttgcatcatt tagccattga
     4321 tgatgtggat ttgcttttta tagaaaatgt tggaaatttg gtttgtcctg caagttatga
     4381 tttaggagag catttaaatg tggttttgct ttcgataact gaaggaagtg ataaaccgca
     4441 aaaataccct gtgatgttta aaaaggctga tatagtttta atcacaaagg tagatttggc
     4501 ccatcatttt gatttcgata ttaaagaggc gactaggttg attaaagaat taaatcctag
     4561 agcagatatt atcacccttg atgcaaaaaa tggcaccaat atggagcttt ggtataaggt
     4621 gcttaaactt aaaaaggagc ttttttaatg tgtttgtcta taccttctga aattttagaa
     4681 atcgatgagt taaacaatgc tttagtacaa actttaggcg tgaaaagaaa agttaatttg
     4741 gatttgattg atgaaccttt aaaacaaggc gattatgtat taatccatgt aggcgttgct
     4801 atggaaaaaa tcgacaaaga agctgcacta gaaagcatta aaacctatca agaaatagta
     4861 gaaaaaatga atagtggaga gataaaaagt gatgaaggag atttgggttt aaatgaattt
     4921 catcgatgaa tttagagata aagaaagcat tttagcttta aaaaaactca tagaacaaga
     4981 acttaaaaat cctattaata tcatggaaat ttgcggtggg catacgcata gtatcatgaa
     5041 atatgctttg ccttctattt tgccaaagga aattaacttt atccatgggc caggatgtcc
     5101 tgtttgtgtt atgccaagag ttcgcattga tacagctatc aagttagcct ccatgaaaga
     5161 tacgattttt tgtactttag gggatctttt aagggtgcct ggaagtgaaa tttctttact
     5221 ggatttaaga gctaaagggg ctgatgttag agcgctttat tctccacttg aggttttgga
     5281 aattgctaag caaaatttaa acaaaaatat catctttttt gctataggtt ttgaaactac
     5341 tacgcctatg agtgctttac ttcttcaaaa ggttatagaa gaaaaaataa ataatgtctt
     5401 ttttcatatc aatcatatca cagttccagc acctgtagaa gcgatcatga atgatgaaaa
     5461 tgtaaaaatc aatgcttttt taggtccttc tcatgtgagt gtgataacag gttatggtat
     5521 ttatgagcct ttagcagcaa aatttaaaac ccctatagcg gtgagtggtt ttgagccagt
     5581 tgatatttta gaaagtgtgt taaatatcat aaaacaaagc aatgaaggca cttttaaagt
     5641 gtataatcaa tacaaaagag ccgtaagcaa agaaggcaat gttaaagcac aaaatttagt
     5701 aaaaaaatac tttagggtgt gtgattttga atttcgtggc ttaggactta ttaaagatgg
     5761 aggcttggag ttaaaagaag aatttagcgc ttacgatgcg agtaaaaaat ttgattgtgc
     5821 ggtgcaaagt aaaaatgaaa gcaaagcctg tatttgtggg caaattttaa gaggtttggc
     5881 caagccttat gattgtaaag tttttggcaa ggcttgtacg ccaagaagtc ctataggaag
     5941 ttgtatggtt tctggcgagg gtgcttgtgc ggcgtattat aaatactcaa aggtgaatgc
     6001 atgaaaaata tttccttagc ccacggaggc ggtggagaag agatgaatga gcttttaact
     6061 aagcttttta agatctttga taatgaaatt ttaaacgcaa ataatgatgc agcgattttg
     6121 ggaaatttgg ctttaagcac ggattctttt gttttaagtc cgattttttt agatgaagag
     6181 gttaatatag gtaaactttg tgtttgtggt tctattaatg atgttttgat ggtgggtgct
     6241 aagccaaaat atctaagctt agggcttatc ttagaagaag gttttgagct agaaaaatta
     6301 gaacgtattt taaaaagcat taaagaagaa tgtgaaaaat gtggagttat gttagtttgt
     6361 ggcgatacta aagttgttcc taagggtaaa gcagatgaaa tttatatcaa cactacagcc
     6421 ttaggtgaaa ttatttctaa aaaagaaagt aaaaatatca aagcagggct tagcatactt
     6481 ctttcaggtg atataggaag gcatggagct agtgttttaa tcaaaagaaa tgagttagaa
     6541 gctaatgtta aaagtgattg taaggcttta gataaagagg ttttagagct tttagaaaaa
     6601 gatataaagg ttgtagcaat gagagatgct actcgtgggg gacttagtgc ggttttaaat
     6661 gagtgggcaa agcaaagtgg aaatgatctt ttgatctttg aagaaaaaat catcgttcaa
     6721 gatgaggttt taggactttg cgagcttttt ggttatgaag cctatgagct tgcaaatgaa
     6781 ggcactttta tactttgtgt ggaaaaagaa gatgggttaa aagccttgga aattctaaaa
     6841 aaatacaatg taaatgcgag tattatagga gaagttttag aagagaaaaa agcacgcgtg
     6901 atcttacaaa acgcttatgg agcaaaacgc tttttagaaa gccctaaagg cgaactttta
     6961 ccaagaattt gctaatgcac gaattaagta tagtagaatc tttaatcgaa ctttgtgaag
     7021 aaaatgcctt aaacaataag gcttacaatg tgcaagaaat ttatgtaaaa atcgggcgtt
     7081 taagcggtgt agaagtggat ctttttaagc gttgttttga aacttttaaa gaaaactcaa
     7141 atatttgtaa aaatgctaaa ctttttatag aacttgcccc acttgaaatt ttatgcttaa
     7201 aatgcgatca aacaagcatt ttagaagaaa atgtttttaa gtgtcctaaa tgtcaaagta
     7261 tagaatacaa aatcacacaa ggtggggact tgcaccttat gcgacttgtg atggagtgaa
     7321 agtaaaatca ataaatgatt ttactttctg ctttcaaatg ctttgataat atctgcttta
     7381 tattgataaa ta
//
LOCUS       DARGEY010000065         7160 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.065, whole genome shotgun sequence.
ACCESSION   DARGEY010000065 DARGEY010000000
VERSION     DARGEY010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7160
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.065"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(1..852)
                     /locus_tag="SF008_001208"
                     /pseudo
     CDS             complement(1..852)
                     /locus_tag="SF008_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882548.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction enzyme HsdR N-terminal
                     domain-containing protein"
     gene            complement(858..1826)
                     /locus_tag="SF008_001209"
     CDS             complement(858..1826)
                     /locus_tag="SF008_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEG8233474.1"
                     /translation="MYRKELQILLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTRASDFLSAGSLFSEKKLLEIKTSKKIPTKDLKVLVDLCKNNTDNFF
                     LLELYDESSKQSDIEKIFSPHFVRFFKANGAKEGVELLSIKAKQLGVEITQNALFTLF
                     TSFDENLYLAASELNKFSDLRVDEKTIEQYCYSLNTGSFESFFDKILKKQDFKSELEK
                     ILDNFNEIALINSLYNSFYRLFKIALYAKVNGKIDFKDLLGYTPPPQVGQNLSSQAFS
                     LKIEQYKEIFTLLLKCEYELKTNSKLVKKEFLISNLLKLARILKIN"
     gene            complement(1819..3753)
                     /locus_tag="SF008_001210"
     CDS             complement(1819..3753)
                     /locus_tag="SF008_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HEG8233475.1"
                     /translation="MKEFLNSLSYGISSHEVNNEFKQILRELLTNHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLVITKRYGEAVLGMNIKTGLSTTLKASQKSLKALPLGTILKIEN
                     ENNNIIEVLGHIHDESVDEKISLALFNKNNEFSDACIKEALANGDSVDASMYKNRMDL
                     RALPFCTIDPIHAKDFDDAIYFDTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPHPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSKRRFN
                     YDEVDKILIQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDENLSLKS
                     TVFEKDTPSHNLIEDCMLLTNKAAAKLIDIGVFRNHLSADVRKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALADELNLRAEVDKLIIKAQKKAEYSSVNAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCENLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKGADIILYDTRVNLLENVEVQIMEAD
                     IVMAKIYAKITQRLIKEENV"
     gene            3872..4894
                     /gene="ilvC"
                     /locus_tag="SF008_001211"
     CDS             3872..4894
                     /gene="ilvC"
                     /locus_tag="SF008_001211"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEG8233476.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     IIGLREGSVSAVKAKNAGFEVMSVSEASKIADVIMILAPDEIQADIFNVEIKPNLSEG
                     KAIAFAHGFNIHYGQIVAPKGIDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIVTEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
     gene            4898..5980
                     /locus_tag="SF008_001212"
     CDS             4898..5980
                     /locus_tag="SF008_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HEG8233477.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVFSVKP
                     DYFIDKQEDLISSNKDHYEIGIFQENEFDNNKSVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFIPKDTNLTQDQNLTFDEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLALKFDFYMVHLPLAAINYNKPEIDTLNPN
                     DSKERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEEAMRKLYEALKNQNIFFVDSKTI
                     GNSKANKIAKELSMPYIQRDVFLDNEDDVNYVKKQLESAVKLAQKKGFVIAIGHPRKN
                     TFKALEQSKDLLKGVDLVYLSEIYGK"
     gene            5970..6743
                     /locus_tag="SF008_001213"
     CDS             5970..6743
                     /locus_tag="SF008_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HEG8233478.1"
                     /translation="MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSR
                     RMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITASMAAMPNTIGIFANGLDQIYPR
                     TNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
                     AKLALELNKPLYVLPQRLGESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLE
                     FCKKGVSVDEALKIYGQKVYEYELEGKISIEGLFIRVLA"
     gene            6740..7123
                     /gene="ruvX"
                     /locus_tag="SF008_001214"
     CDS             6740..7123
                     /gene="ruvX"
                     /locus_tag="SF008_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEG8233479.1"
                     /translation="MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKN
                     LLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV
                     ANTRKKDGKLDSLSAFIMIKDYFAL"
BASE COUNT         2443 a          987 c         1160 g         2570 t
ORIGIN      
        1 tactaaaata gcttaaagta tctttgtaac ttacatcttc aagattggca ctgacactag
       61 caagaattga ttttactata tagaaacctt gtaattcttc ttctgttgtg acaatatctt
      121 tactttcatc aatttgctca tcattttcat catcgtttat gttttgaaga ttgtttttaa
      181 tgcttgtgat tttttcataa gctaaatcat taataatttc tttaaaagat tttttaatgt
      241 aatttttaaa ttcttctaaa acagcactag tcattctttt ttctgtcatt tgtttagcaa
      301 aaaaacttgt aaattcatcg cttggatttt ctatttcact tttaaaaatt tcttgtatac
      361 ttcggtaata ttttttctcc atagcaatgc ttagaatttc atctaagttt aagtcagtgc
      421 aaataaaacg ttttagatct ttaatatctc taggtttaag tttttcaaga ttaacaacta
      481 aaaatggtat tttatccata agattttgtt gttcaatatc tgtaaaaaat ctatattcaa
      541 taccattggt aagaatggca aatttaatac taggattagt gttaaaatat cttacaagct
      601 gattgttatg attatttaaa ttttcagtat gatttttagc ttcaattaaa ataaaaggtt
      661 ttgaatcttt gaaaatagca taatccactt tttcgccttt tttagttcct atatctgctg
      721 tatattctgg cataacaata ctagggttaa aaacatcata acccaatgtt tttaaaaagg
      781 gcatttaaaa gtcatttttg tagcttcttc agtattgaca agtgttttgc gttcagctat
      841 tgtttcaacg atggcattta attgattttc aaaatccttg caagtttaag caaatttgaa
      901 atcaaaaatt ctttttttac gagcttagaa ttggttttaa gctcgtattc gcatttaagc
      961 aaaagagtga aaatttcttt atattgttcg atttttaaac taaaggcttg agagcttaaa
     1021 ttttgtccca cttgaggagg tggagtatag cctaaaagat ctttaaagtc aattttacca
     1081 ttgactttag cataaagtgc gattttaaac aaacgataaa aagaattata caaagagttg
     1141 attaaagcaa tttcattaaa attatctaaa attttttcaa gttcgctttt aaagtcttgt
     1201 ttctttaaaa ttttatcaaa aaagctttca aaacttcctg tattcaaact atagcagtat
     1261 tgttctatgg ttttttcatc tactcttaaa tcactaaatt tattaagctc actcgcagca
     1321 agatataagt tttcatcaaa acttgtaaaa agagtaaata aagcattttg agtgatttca
     1381 acccctagtt gttttgcttt tatacttaaa agctccacgc cttctttagc tccgttagct
     1441 ttaaaaaatc ttacaaaatg aggagagaaa attttttcta tatcgctttg tttagaactt
     1501 tcatcataaa gctctaaaag aaagaaattg tccgtattgt ttttacaaag atctactaaa
     1561 actttaagat cttttgttgg aattttttta gaagttttga tttctagtaa ttttttttca
     1621 ctaaaaagcg atcctgcgct taaaaaatca ctcgcacgag tgaagttgta ttcttcaaaa
     1681 aaaagtttta aagtttcatc gggcttatat ttttctttta taaattcagc ataaagttcg
     1741 ctttgaaaat tatctgctcc ataaagaaag aaaaaattag gtattgaatc tttagaaagt
     1801 aagatttgaa gctcttttct atacattttc ttcctttata agtctttggg tgattttagc
     1861 ataaattttt gccataacta tatccgcttc catgatttgt acttcaacat tttctagcaa
     1921 atttacacgc gtatcataaa ggattatatc cgctcctttg atttcatcat ctagtttggc
     1981 tatgcaaact ccatcatttt ggacaactaa agctttaaat tttttgccta tatttttagc
     2041 tgcccatcta gcaaattttc tatccataaa atcaaaagca accttatccg cctctctttc
     2101 aagtgtgcta agattctcac aagtgctttc tatgtttaaa agtagataat taaaaagttt
     2161 ttcatcgttt ttttgcttgg cttttaaaag tctgtgcaaa ataagatcag aataccttct
     2221 tatagggctt gtaaaatgtg agtatttatc aaaacctaag ccaaaatgtc ccgcattgac
     2281 gctagaatat tccgcttttt tttgtgcttt gatgatgagt ttatctactt ctgctcttaa
     2341 atttaattca tcggctaaag cttgtatgtc gcgtatgagc tcaggaagat tgggcttaaa
     2401 atttacatcg atgcctagtt cgcgtaattc atttaaaagc ttatcgattt ttcttacatc
     2461 agcacttaag tgatttctaa aaacacctat atctatgagt tttgctgcgg ctttattggt
     2521 taaaagcata caatcttcga tcaaattatg cgaaggcgtg tctttttcaa aaactgtact
     2581 ttttagactt aaattttcat ctaaattcat tcttaattct tcggtgcgaa attcaaaggc
     2641 atttttaaga cgcattttgc gtaaattttt tgtgatttca aaaagctcat aaagccatga
     2701 aagctctttt aaatcaggtt tttgtatcaa aattttatca acttcatcat aattaaaacg
     2761 gcgttttgaa ttgataatac cttcaaaaag ttcttctttt atgactttat tttcatgatc
     2821 gagtgtgatt ttaaaacaat acgctaagcg atctaaatga ggttttaaag aacagatatt
     2881 ttcacttaaa ggatgcggta acataggtat agcaatatgt ggaaaataaa tagaaaatcc
     2941 acgatttctt gcttctttat ctatagcgct ataagcataa acatattcgc taacatcagc
     3001 aatagctaca taaatttctc gtttttgggt gtcaaaataa atcgcatcat caaaatcttt
     3061 tgcatgtata ggatctatgg tgcaaaaagg caaggctctt aaatccatgc gatttttata
     3121 catactcgca tcaacactat caccgtttgc tagagcttct ttgatacaag cgtcgctaaa
     3181 ttcgttattt ttattaaaaa gagctaggga gattttttca tctacgcttt catcatggat
     3241 atgccctaaa acttctatga tattgttatt ttcattttct atttttaaaa ttgtccctaa
     3301 aggtagtgct tttaaggatt tttgagaagc ttttaaggtg gtgcttaatc ctgttttgat
     3361 attcattcca agcacggctt cgccatacct tttggtgatc actaaagagg tttcattggc
     3421 tctttttaga accaaaatca cctttgcact ggggcgtttt ttctttaaag gtagaagttt
     3481 tactgcgact atatctttat agtttgcgcc ttttaggttt ttgttttcta tcaaaagatc
     3541 ttttttgaaa ctttcatcaa agcattgtaa aaaacctgtg cctttactcg aaatatcaag
     3601 tactccaaag gcaaaaccat tgttaagata gtatttgttt ttgtgttctt tgatgatatg
     3661 attggttaaa agttctctta aaatttgttt aaattcattg tttacttcgt gagagctaat
     3721 gccataacta agactgttta aaaattcttt cacttttgat actttatgat tttttgtaaa
     3781 attcttacat aaagtttata aaaaaaatat gaaatttata ctttaattgc tataataata
     3841 cctttaattt ttgaattttt aaggagtgaa tatggctatt acagtatatt atgataaaga
     3901 ttgtgattta aatttaatca aatcaaaaaa agtagcaatt ataggctttg gctctcaagg
     3961 gcacgctcat gcgatgaatt taagagataa tggcgtaaat gtaattatcg gacttcgtga
     4021 aggtagtgta agtgctgtta aagcaaaaaa tgctggtttt gaagtaatga gtgtgagtga
     4081 ggcttctaag atagcggatg tgattatgat tttagctcct gatgaaattc aagcagatat
     4141 ttttaatgtc gaaataaaac caaatttaag cgaaggcaag gctatagctt ttgcgcacgg
     4201 ttttaatatc cattatggtc aaattgttgc tccaaaaggt atagatgtta tcatgatagc
     4261 acctaaagca ccaggacaca cagtaagaaa tgaatttact ttaggaggtg gaactccttg
     4321 tttaatagcc atccatcaag atgaaagtaa aaatgctaaa aatttagcct taagttatgc
     4381 aagtgcgatt gggggcggac gcacaggtat tatagaaaca acctttaaag ccgaaacaga
     4441 aacagatctt tttggtgaac aagctgtgct ttgtggtggg cttagtgctt tgattcaagc
     4501 aggttttgag actttggttg aagcaggtta tgaacccgaa atggcttatt ttgagtgttt
     4561 gcatgaaatg aaactcattg tggatttgat ttatcaaggt ggtattgcag atatgcgtta
     4621 ttctatctca aatactgcag aatacggcga ttatattaca ggaccaaaga ttgttactga
     4681 agagactaaa aaagcgatga aaggtgtttt aaaagatata caaaatggtg tttttgcaaa
     4741 agattttatc ttagaacgcc gtgcaggttt tgctagaatg catgcagaac gcaaaaatat
     4801 gaatgattct ttgatagaaa aaacagggcg caatttgcgt gctatgatgc cttggatcag
     4861 tgctaaaaaa ttagtagata aagataagaa ctaaacattg tcaaagaaaa aattagttca
     4921 aattcagcgt tatttaatca tagctatact ttttttactt tgtatagctt tagctttggg
     4981 aattttagta aaatatcaaa attcccaaga tgttttttct gttaagccgg attattttat
     5041 tgataaacaa gaagatttaa tttcatcaaa taaagatcat tatgaaattg gtatttttca
     5101 agagaatgag tttgataata ataaatctgt aagtatttta gagcaaaaaa ttcaagaaat
     5161 cgatgattta aatacaagtt taaatgagca aaatttaagc agtgtggagc agaatttaag
     5221 tttagagcaa aatcagagtt tagaacaaaa ttttattcca aaagatacaa atttaaccca
     5281 agatcaaaat ttaacttttg atgaagatat tcatttaaat aaaatttcta aaaaaccaaa
     5341 acttgctatt attatcgatg atatggcaaa tgcaagtcag gttagaggtt taaaagcttt
     5401 aaatttaaag ttaaatcctt ctttttttcc gccagataaa aaccatagtg aaacgccaaa
     5461 acttgcttta aaatttgatt tttatatggt gcatttacct ttagcagcaa ttaattataa
     5521 taaaccagaa attgatactt taaatccaaa tgatagcaaa gaaagaattt ttaaaaaaat
     5581 caagcaaatt aaaaaagatt ttaaggattt aagatatatc aataatcaca caggaagttt
     5641 atttacaagc aatgaagaag ctatgagaaa gctttacgag gctttaaaaa atcaaaatat
     5701 attttttgta gattctaaaa ctataggaaa ttctaaggca aataaaatcg ctaaagaact
     5761 cagtatgcct tatatacaaa gagatgtgtt tttggataat gaagatgatg ttaattatgt
     5821 taaaaaacaa cttgaaagtg cggtaaaact tgcacaaaaa aaaggttttg ttatagccat
     5881 aggacatcct aggaaaaata cttttaaagc tttagagcaa agtaaggatt tgttaaaagg
     5941 cgttgatctt gtgtatttga gtgaaattta tggcaagtga aattttgcct gatgaatttt
     6001 tagagctttt tcaagattta aaaaagcctc ctaaaaaatt acactataaa ggaaatttat
     6061 ctttattaaa acaagataaa atcgctatta taggttcaag gcgtatgagt gtttatacga
     6121 aaaattgtgt tttttcctta gcgagtatgc ttaaaaatgc tcatctttgc gtggtaagtg
     6181 gcggtgcttt gggtgtggat atcaccgcaa gtatggcagc tatgccaaat actataggta
     6241 tttttgccaa tggtttagat caaatttatc caagaactaa tgaaaaaatc attaaacaaa
     6301 tttatgaaaa tgctttagct ttaagtgaat acgaagatga ttatttgcca aaaaattatg
     6361 attttttact aagaaatcgt ttggttattg ctttaagtaa ggccgttgtg gttgcacaag
     6421 cagatataaa aagtggttct atgcagagtg caaaacttgc tttagaactc aataaacctt
     6481 tatatgtttt accacaaaga ctaggagaaa gcacaggaac taattttctt ttaaaggaaa
     6541 ataaagcaaa gttaatttgt gattttaaag aatttgtaag tgagtttgca agtatagata
     6601 taaatcaaga tgaattttta gagttttgta aaaaaggtgt gagtgttgat gaggctttaa
     6661 aaatttatgg acaaaaagtt tatgaatatg aacttgaggg aaaaatttcc atagaagggc
     6721 tttttataag ggttttagca tgagagcttt ggctttagat gtaggtttaa aacgcatagg
     6781 tgtagcgctt tgcatagata aaaagatcgc tttgccttta gatgcagttt taagaaaaaa
     6841 tcgcaatcaa gccgctaatg aaatcaaaaa tttacttaaa atacatgaaa tttctttact
     6901 tattgtaggc attcctaagg gtggatcaag tgaagaagaa atgacaagac gcattaagca
     6961 ttttgtttct ttgcttgaat ttgataaaga aatttgcttt gtagatgaaa gcggaacaag
     7021 caaagaagct ttaggatacg gcgtagccaa tacacgcaaa aaagatggta aattagactc
     7081 tttatccgct tttatcatga taaaggatta ttttgctctc tagaatagaa aaactttata
     7141 ccaaagatga aatgcaaaat
//
LOCUS       DARGEY010000066         7135 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.066, whole genome shotgun sequence.
ACCESSION   DARGEY010000066 DARGEY010000000
VERSION     DARGEY010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7135)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7135)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7135
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.066"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            9..725
                     /locus_tag="SF008_001215"
     CDS             9..725
                     /locus_tag="SF008_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG8233480.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLKISFQDKSIIDI
                     GCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKTHTISNLKTLNLDFESFYKNNN
                     AKFDLAFLSMSPALQNEKDYTNFLNLAKIKIYLGWADYRKSDFLDPIFKYFNTEFKGF
                     YKKDLENYLLEKNIFFHKIVFDETRKVQRTKEEAIENALWHLSMNKITTSKEAVSSFV
                     ENDIIETIESKIKLLIINNL"
     gene            781..1002
                     /locus_tag="SF008_001216"
     CDS             781..1002
                     /locus_tag="SF008_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233481.1"
                     /translation="MVKNLIIKFGRLILDAIAAISFVVALLYSLFMMFSIGFLAGLLS
                     LIVSFIALFLSFFVIYLVIDIRDALVNKA"
     gene            complement(1027..2034)
                     /gene="pyrC"
                     /locus_tag="SF008_001217"
     CDS             complement(1027..2034)
                     /gene="pyrC"
                     /locus_tag="SF008_001217"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEG8233482.1"
                     /translation="MKLKNPLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPPLC
                     NLEDLKAYKMRIIKACKDENFTPLMTLFFENYDEKFLYSAKDEIFGIKLYPAGITTNS
                     NGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMDRESNFAKIYEKLAKHFPRLK
                     IVMEHITTKTLCELLKDYENLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDK
                     EALCELAFSGYEKVMFGSDSAPHPRDTKECCGCAAGVFSAPVILPVLAELFRQNSSEE
                     NLQKFLSDNACKIYDLKFKEDKILTLEEKEWQVPNVYEDKYNQVVPYMAGEILKFQLK
                     H"
     gene            complement(2043..2270)
                     /locus_tag="SF008_001218"
     CDS             complement(2043..2270)
                     /locus_tag="SF008_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HEG8233483.1"
                     /translation="MKFEKLIQEILGKKRFELLKFLCENADENGFIMIKISELEEKLN
                     QSKPTIIATFKFLEEKKLFKRLKNGFYQLKI"
     gene            complement(2267..2623)
                     /locus_tag="SF008_001219"
     CDS             complement(2267..2623)
                     /locus_tag="SF008_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HEG8233484.1"
                     /translation="MKPKYHFLNNARYALEGIFALFKNEMAFRIELCIIIPAIVFSFF
                     LKVSFLEHLLLVSVLMLILIIEALNSAIEACVDLITNEWHEKAKIAKDCASTAVFFSV
                     LLALFVWSFILYSIYL"
     gene            complement(2620..4158)
                     /gene="eptC"
                     /locus_tag="SF008_001220"
     CDS             complement(2620..4158)
                     /gene="eptC"
                     /locus_tag="SF008_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A/FlgG phosphoethanolamine transferase
                     EptC"
                     /protein_id="HEG8233485.1"
                     /translation="MLRLTWLQFTFFNSLMIVLLNFNLFYFVYEKNTQNWFITFVFIV
                     AYFALVHVICSLLFIKFFTKFFSILFIISSFLSVYFISFYGVLIDSDMIQNVVQTDIK
                     EVKDLLNLKLILFVVLALLLVFYVVKVKIDYYGSFKSHLKIKIINIISGLIVVCAVLI
                     PLSKTFLPFFRNYNEIRMYNTPFYQIYAVYRYYVRFVKAKPEFKTIANDAYRENNHTK
                     KLLVLVVGETARAANYSLGGYAKNDTNFYTKKDNVVFFDNFSSCGTATAVSLPCMFSI
                     SKRENYSSSEFQENAMDVLYKTGVDTAWFDNNSGGCKGVCDRLAYKQKLSSDLDENLL
                     APFKEKLNHLSDQNIIVLHLQGSHGPTYYKRYPSEFKKFTPTCDTNELSKCDSEALIN
                     TYDNTLLYTDYLLSEIIKLLKEQKSYESSLFYLSDHGESLGENDIYLHGMPYAIAPSY
                     QTRIPAIFWSNDEKLMNLAKEHKGLKLSQDNLFSTLLGYFDVKTSVYEPEYDLLNPKL
                     KANP"
     gene            4276..5034
                     /gene="xth"
                     /locus_tag="SF008_001221"
     CDS             4276..5034
                     /gene="xth"
                     /locus_tag="SF008_001221"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEG8233486.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEQIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYFNSAKRAGYSGVMSLCNFNSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
     gene            complement(5053..6213)
                     /locus_tag="SF008_001222"
     CDS             complement(5053..6213)
                     /locus_tag="SF008_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233487.1"
                     /translation="MYFKKEGKMKNTLIIFENSLSNLGKDEASDLLEDLSFNLAYKQI
                     SHNPHETKKVLNSLLVEFLTILKKLDFFDDENVTKVIKALVKASIVDAQNSLYGYISE
                     AELLNKQIENQKNLIKNQISDNFFEFENILQECSFCDEFSGGLNDAILFDIEMLGILK
                     ETAESAFLTTLEKAEDIELTSSEIAKNLVYNAICEAHFEKERILKISSIILNTAFEIA
                     NESMAYAKDLCLGVIKGTRDGIVLAMEKFKASLTYANFEEDVSLKSKELIGIEDDFIA
                     LLKKEIQLQNDPCKSIVENLLEHELDNLFAKFRRLAGESREQLILVLNDIKKNPKIND
                     FNKLTQRKLNRFKQEIFELEKIASEKYKDLNSKKAKKLGVRLWEKAKKFVKK"
     gene            complement(6203..6466)
                     /locus_tag="SF008_001223"
     CDS             complement(6203..6466)
                     /locus_tag="SF008_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 domain-containing protein"
                     /protein_id="HEG8233488.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHIKASEIFEEILGQREY
                     KFEHSNSSASGKYQSYLLNVYVDSKKDRLDIFDKLKAKAKFVL"
     gene            complement(6444..6917)
                     /gene="moaC"
                     /locus_tag="SF008_001224"
     CDS             complement(6444..6917)
                     /gene="moaC"
                     /locus_tag="SF008_001224"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HEG8233489.1"
                     /translation="MKLSHLDEKNHPKMVDVSDKNITSRIATASGMIYMSQEAFDVIK
                     NNTAKKGPVLQTAIIAAIMGAKKTSEIIPMCHPLMLSKIETDIVEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRIMDIVLESKEGGKSGKFVRS"
     gene            7010..>7135
                     /locus_tag="SF008_001225"
     CDS             7010..>7135
                     /locus_tag="SF008_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HEG8233490.1"
                     /translation="MAYEDEEDLNYDDYENEDEEYTQNHHKNYNYDDDDYEYDDDN"
BASE COUNT         2616 a         1093 c          881 g         2545 t
ORIGIN      
        1 gaaaatatat gaatttatgg gataaaaagg ccaaaactta cgcaagatat caaaacactt
       61 taaacaccat acaaaagcaa acttttgaat atttacaaaa tttaaagatt tcctttcaag
      121 ataaaagtat tatagatata ggatgtggaa ctggggtttg gactttacac ttagctaaag
      181 aagctaaaga aattttagcc ctagatagtg caaatactat gcttgaaatt ttacaagaag
      241 atgcaaaaac tcataccata tcaaatttaa aaaccctgaa tttagacttt gaaagctttt
      301 ataaaaataa taacgcaaaa tttgacttag cctttttaag tatgtctcct gctttacaaa
      361 atgaaaaaga ttatacaaat ttcttaaatc tagccaaaat aaaaatttat cttggttggg
      421 ctgattatag aaaaagtgat tttttagatc cgatttttaa atattttaat actgaattta
      481 aaggttttta taaaaaagat ttagaaaatt atttactaga aaaaaatata ttttttcata
      541 agattgtttt tgatgaaaca cgcaaagtcc aaagaacaaa agaagaggct atagaaaatg
      601 ctctatggca tttaagcatg aacaaaatca caacttctaa agaagctgta agttcttttg
      661 ttgaaaatga tattattgaa actatagaat ctaaaataaa acttttaatt ataaataact
      721 tataaaaata ttaagctgat atttattaca atttcactca ttatttcaaa ggagttttta
      781 atggttaaaa atttaatcat caaatttgga cgcttgattc ttgatgcaat tgcagcgata
      841 agttttgttg tagctttgct ttattctctt tttatgatgt ttagcattgg atttttagct
      901 ggtttattat cgctgatagt cagttttatt gctttatttt taagtttttt tgtaatctat
      961 cttgttatag atatcagaga tgctcttgta aataaagctt aaattttcca cctttaaggt
     1021 gggaaatcaa tgttttaatt gaaattttaa aatttctcca gccatataag gcacgacttg
     1081 attgtattta tcttcataaa catttggcac ttgccattct ttttcttcta aagttaaaat
     1141 tttatcttct ttaaatttta aatcataaat tttacaagca ttatcgctta aaaatttttg
     1201 caaattttct tcagaactat tttgcctaaa taattcagcc aacacaggta aaatcactgg
     1261 ggcgctaaat acacctgcgg cacaaccaca acactcttta gtatctcttg ggtgaggcgc
     1321 actatcactt ccaaacataa ctttttcata accactaaaa gcaagttcgc aaagggcttc
     1381 tttatcttcg taacgcttgg ctataggctt acaaaaaaga tgaggattca ttttacctcc
     1441 gataacatca tctaaagtga tgattaaatg atgtaaagtg attgtcgcgt ataaattttc
     1501 ataatctttt aaaagttcac ataaagtttt agtggtaata tgctccataa caatcttaag
     1561 tcgtggaaaa tgtttggcta atttttcata aattttagca aaattacttt ccctgtccat
     1621 tacaaaatca ttggtttctc catgcactag caaaggaata tttaaatcac tcatagcctc
     1681 taaagtaggt tttaaatact ctatatcaaa acttgaaact ccgccatttg aatttgttgt
     1741 aattcctgct ggataaagct taatgccaaa aatttcatct ttagcactgt aaagaaattt
     1801 ctcatcataa ttttcaaaaa aaagtgtcat taaaggagtg aaattttcat ctttacaagc
     1861 cttaatgata cgcattttat aagcttttag atcttctaaa ttgcaaagtg gagggattaa
     1921 atttggcata atcacagctg cacaaaaatc tcttgcactc aaaggtgcaa taagttctaa
     1981 catttgatta tctcttaaat gcaaatgcat atctaaagga tttttaagtt tcattttatc
     2041 tcctatattt ttagctgata aaatccattt ttaagacgct taaaaagctt tttttcttct
     2101 aaaaatttaa aagtagcgat gatagtgggc ttgctttggt ttaatttttc ttcaagctca
     2161 ctgattttaa tcataataaa accattttca tcggcatttt cgcataaaaa ttttaacaat
     2221 tcaaaacgct tttttcccaa aatttcttgt attaattttt caaatttcat aagtaaatgc
     2281 tatataaaat aaaactccaa acaaaaagag ctaaaagcac actaaaaaac actgccgtac
     2341 tcgcacaatc tttagcaatt tttgcctttt catgccattc atttgtaatc aaatcaacac
     2401 aagcttcaat agccgaattt aaagcctcta taattaaaat aagcattaaa acacttacca
     2461 ataataaatg ctccaaaaaa ctaactttta agaaaaaact aaaaactatc gcagggataa
     2521 taatacaaag ttcaattcta aacgccattt catttttaaa taaagcaaaa atcccttcta
     2581 aagcatatct tgcattattt aaaaaatgat atttaggctt catggatttg ccttaagttt
     2641 aggatttaat aaatcatatt ctggctcata aacacttgtt tttacatcaa aatatcctaa
     2701 aagagtacta aaaagattat cttgagaaag ttttaaacct ttatgctctt tagctaaatt
     2761 cattaatttt tcatcattgc tccaaaaaat agcaggaata cgggtttgat aacttggcgc
     2821 tatagcataa ggcataccat gaagataaat atcattttca cccaaacttt caccatgatc
     2881 tgaaagataa aacaaagaac tttcatagct tttttgctct tttaatagtt ttataatctc
     2941 acttaaaaga taatctgtat aaagtaaagt attgtcataa gtattgatca aagcctcgct
     3001 atcacatttt gaaagctcat tagtatcaca agttggagtg aattttttaa attcacttgg
     3061 atagcgttta taataagttg gcccatgaga accttgcaaa tgaagaacta ttatattttg
     3121 atcacttaaa tgatttaatt tttctttaaa aggagcgagt aaattttcat ccaaatcact
     3181 agaaagcttt tgcttataag ctaatctatc acaaacccct ttacaaccac cagaattatt
     3241 atcaaaccat gcagtatcta cacctgtttt ataaagcaca tccatcgcat tttcttgaaa
     3301 ttctgaactt gaataatttt cacgcttaga aatagaaaac atacaaggta aacttaccgc
     3361 tgttgctgtt ccacatgatg aaaaattatc aaaaaacact acattatctt ttttggtata
     3421 aaaattggta tcatttttag catatccacc caaagagtaa tttgccgctc tagcggtttc
     3481 acccactacc aaaactaaaa gttttttagt gtgattgttt tctctataag catcattagc
     3541 tatagtttta aattctggct tagcttttac aaaacgaaca taatagcgat atacggcata
     3601 aatttgataa aaaggggtat tatacattct tatttcatta tagtttctaa aaaaaggcaa
     3661 gaaagtttta cttaaaggga ttaaaaccgc acaaacaaca atcaaacctg atattatatt
     3721 gataatttta atttttagat gggatttaaa actaccataa taatcaattt ttactttaac
     3781 aacataaaaa accaacaata aagccaaaac aacaaataag attaatttta aatttaacaa
     3841 atcttttact tctttgatat ctgtttgaac aacattttgt atcatatcag aatctataag
     3901 caccccataa aaactaataa agtaaacact taaaaaagat gatattataa ataatataga
     3961 aaaaaattta gtaaaaaact ttataaaaag caaagagcaa atcacgtgaa caagggcaaa
     4021 ataggccaca ataaaaacaa aagttataaa ccagttttgt gtattttttt catacacaaa
     4081 ataaaataaa ttaaaattca acaatacaat catcaaagaa ttaaaaaaag taaactgaag
     4141 ccaagttaat ctaagcatat aaatcccacc tccaaattta agcttttaat tttattgaat
     4201 ttttttaaat ggattgtagt tttaaatctt tttatgttat gatttacact tttaatgaaa
     4261 attttaagga aaataatgaa actactttca tggaatgtca atggcttaag agctatttgt
     4321 gataaaaatg cacttgattg gatagcacaa gaacaaattg attttatagg ttttcaagaa
     4381 atcaaagcac atgaagataa atttcctaaa aaaatttatg aatatccttt taaacacatg
     4441 tattttaatt ctgctaaaag agcggggtat tctggggtaa tgagtctttg taattttaat
     4501 agcgaagtaa aaaaatgcga attttttgat gatgaagaag gtagggtttt agaacaccgc
     4561 tttaaaaata ttgcactttt taatatctat tttccaaatg gtcaaaaaga tgaagagcgt
     4621 ttaaatttta agatgaaatt ttatgcagat tttttagtgt atttggataa acttttaaag
     4681 gatggatttg aaattatcat ttgcggtgat gtcaataccg ctcataaaga aatcgatctt
     4741 actcatccaa aagccaatgc caacacttca ggttttttac ctatagaaag agcttggatt
     4801 gatgatttgc taaagcttgg ttttatagat acttttagag aaattaatgg tgaaatcaaa
     4861 gaaaaatact cgtggtggag ctatagaatg aaagcaagag aaagaaatgt aggctggagg
     4921 attgattatt ttttcatttc aaagggttta aaagataaac ttaaaaacgc tttcataaga
     4981 gatgatattt ttggctctga tcacgcacct gtaggtatag aaatagatat ttaatatccc
     5041 aaaaatggga tattattttt taacgaattt ttttgctttt tcccaaagtc ttacaccgag
     5101 ctttttagct tttttggaat ttaaatcttt gtatttttca ctagcaattt tttctaattc
     5161 aaaaatttct tgtttaaaac gatttaattt tctttgagta agtttgttaa aatcattaat
     5221 ctttggattt ttcttaatat catttaaaac taatattagt tgctctctgc tttcacctgc
     5281 aagacgtcta aatttagcaa aaagattatc aagttcatgt tctagcaaat tctcaactat
     5341 actcttacaa ggatcatttt gtaattgaat ctcttttttt aaaagagcaa taaaatcatc
     5401 ttctatacct attagttctt tgctttttaa actaacatct tcttcaaaat ttgcataagt
     5461 taatgaagct ttaaattttt ccattgccaa aacaatacca tcccttgtgc ctttaatcac
     5521 gcctaaacaa agatcttttg cataagccat agattcatta gctatttcaa aagcggtatt
     5581 taaaataata cttgaaattt ttaaaattct ttctttttca aaatgagctt cacaaatggc
     5641 attatataca agatttttag ctatttcact acttgtaagt tctatatctt cagccttttc
     5701 taatgtagtt aaaaaagcac tttcagcggt ttcttttaaa attccaagca tttctatatc
     5761 aaataaaata gcatcattta aaccgccact aaattcatca caaaaagaac attcttgtaa
     5821 aatattctcg aattcaaaaa aattatcgct gatttgattt ttaatcaaat tcttttgatt
     5881 ttcaatctgt ttgtttaata attcagcttc gctaatatac ccataaagtg aattttgagc
     5941 atctacaata ctcgccttaa ccaaagcttt gataaccttt gtaacatttt catcatcaaa
     6001 aaaatcaagt tttttcaaaa tagttaaaaa ttcaaccaaa agagaattta aaactttttt
     6061 tgtttcatga ggattatgtg aaatttgctt atacgcaaga ttaaaactca agtcttcaag
     6121 taaatcactt gcttcatctt taccgagatt tgataaagaa ttttcaaaaa taattaaagt
     6181 atttttcatt tttccttctt tcttaaagta caaattttgc tttagctttt aatttatcaa
     6241 atatatccaa acgatctttt ttgctatcaa cataaacatt taacaaataa ctttgatatt
     6301 ttccactcgc acttgaattc gaatgttcaa atttatattc tctttgacct aaaatttctt
     6361 caaaaatttc acttgcctta atatgcacct caaaaatcac cttataatcc caaaaagtag
     6421 gataattgat ctgaggttct tttttaagat cgcacaaatt taccactttt acctccttct
     6481 ttgctttcaa gcactatatc cataattctc attgatttat ctatagcctt gatcatatca
     6541 tatatagtta aaagtcctat actaactcca cttaaagctt ccatttcaac tcctgtttta
     6601 ccttcacact taactgttac aataagctta aatgcacatt ctttaacaaa ttccacaata
     6661 tctgtttcaa tcttagaaag catcaaagga tggcacatag gaataatttc acttgttttt
     6721 ttagccccca ttatagccgc aataatagct gtttgaagaa caggaccttt ttttgcggta
     6781 ttgtttttaa ttacatcaaa agcttcttga ctcatatata tcataccact agctgtggct
     6841 attcttgaag taatattttt atcgcttaca tctaccattt taggatgatt tttttcatct
     6901 aaatgactta atttcataaa ttcacctttt aaaaaattat aaaaattata gcaaaaccaa
     6961 acaaatttaa gataaaataa gctttgtatt tttatttaag gagaaaacaa tggcttatga
     7021 agatgaagaa gatttaaatt acgatgatta tgagaatgaa gatgaagaat atacacaaaa
     7081 tcaccataaa aattataatt atgatgatga tgattatgaa tacgatgatg ataac
//
LOCUS       DARGEY010000067         7110 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.067, whole genome shotgun sequence.
ACCESSION   DARGEY010000067 DARGEY010000000
VERSION     DARGEY010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7110
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.067"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..400
                     /locus_tag="SF008_001226"
     CDS             <1..400
                     /locus_tag="SF008_001226"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RsmE family RNA methyltransferase"
                     /protein_id="HEG8233491.1"
                     /translation="LEKTLPFLNELGVKKLHLVFTNFSQRNFKIDLERFEKIIISSCE
                     QCGRNTKMDLIIHQSTQEFVQKFPNAIMVDFQGEQQSHFDEKELYFIGPEGGFNNDER
                     LLFNRKISLKSSNILKSQTAIIAIASKILL"
     gene            479..679
                     /gene="rpmE"
                     /locus_tag="SF008_001227"
     CDS             479..679
                     /gene="rpmE"
                     /locus_tag="SF008_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HEG8233492.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            682..1506
                     /gene="rsmI"
                     /locus_tag="SF008_001228"
     CDS             682..1506
                     /gene="rsmI"
                     /locus_tag="SF008_001228"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEG8233493.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLL
                     NTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEF
                     AQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPS
                     IIYESPKRILSLVEQIMILDSQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELSLKAKAKLLSKINGKNAKEIYQKLLLSQD"
     gene            1520..2203
                     /gene="rlmB"
                     /locus_tag="SF008_001229"
     CDS             1520..2203
                     /gene="rlmB"
                     /locus_tag="SF008_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEG8233494.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKITFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIAISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKISNGKKVLVLGSEGFGLNSKIIKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            2196..3134
                     /locus_tag="SF008_001230"
     CDS             2196..3134
                     /locus_tag="SF008_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233495.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSSNAWPFLIV
                     LIVLVIIGSGIYYFDTLKTFFKDEQNNTSATVIDIIGQAQENLKSLSGNNVVVIDNNK
                     AQETNQTESVLPSQNTSLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTLKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENK
                     EQKFPVGISKRFLIKDGKITSISAAEFVKLNKGKEW"
     gene            3128..3934
                     /locus_tag="SF008_001231"
     CDS             3128..3934
                     /locus_tag="SF008_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233496.1"
                     /translation="MVKKIIILTFWVNISFAISSLELAKNLVNNPSKNSQLELLFSNN
                     SYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLKLNFKAKADEVMFFKILSDVLTDA
                     GYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYIDNIKRIGAYDYEY
                     DLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVLDLKNATNLIIDANDLDNWFPKIFFLD
                     KNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRGLKITLKK"
     gene            3946..5148
                     /locus_tag="SF008_001232"
     CDS             3946..5148
                     /locus_tag="SF008_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HEG8233497.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPD
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVAIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPRPKYIVVNFPHNPTTVTCEKSFYERLITTAKKERFYIISDIAYA
                     DLTYDDYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKE"
     gene            5152..6399
                     /locus_tag="SF008_001233"
     CDS             5152..6399
                     /locus_tag="SF008_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEG8233498.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALARSP
                     KKNALIPITHSVAEILNADVDVFVELMGGVDEAFKIVSEILKKKKAVVTANKAMLAYH
                     RYELENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFKQALQIAQNLGYAEADPTFDIEGRDAAHKLLVLSSIAYNLKAKPEDILIEGIS
                     EIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLGESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYELLSKDEIYT
                     KYYLRVKVEDKIGVLSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSI
                     QNLLEILRKQDFIKTKPFMMRID"
     gene            6399..6737
                     /locus_tag="SF008_001234"
     CDS             6399..6737
                     /locus_tag="SF008_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HEG8233499.1"
                     /translation="MGLKAYLDGILGEDKACKFLKKQGFEILKRNFYSKFGEIDIIAK
                     KDEILHFIEVKFTQDDYEVSERLDRKKLEKILKTIEFYHLKNGISSDFQIDLICIKND
                     VIQFCENISF"
     gene            6794..7108
                     /gene="trxA"
                     /locus_tag="SF008_001235"
     CDS             6794..7108
                     /gene="trxA"
                     /locus_tag="SF008_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEG8233500.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELAN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
BASE COUNT         2715 a          888 c         1217 g         2290 t
ORIGIN      
        1 tttagaaaaa actctacctt tcttaaatga acttggagta aaaaagttac atttggtttt
       61 tacaaatttt tcacaaagaa attttaaaat cgatttagaa agatttgaaa aaatcattat
      121 ttcttcttgt gaacaatgcg gtagaaatac taaaatggat ttaattatcc accaaagcac
      181 tcaagaattt gttcaaaaat ttccaaatgc aattatggtt gattttcaag gagaacaaca
      241 aagtcatttc gatgaaaaag aattatattt tataggtcct gaaggtggat ttaacaatga
      301 tgagagatta ttgtttaacc ggaaaatctc tcttaaaagc tctaatattc taaaaagtca
      361 aacagctatt atagctatag cttcaaaaat tttgctttaa cttttcttaa attaatctct
      421 tttttatgtt aaataattta taatcacggc ttattgtttt aatttttaag gaaaactaat
      481 gaaaaaagaa attcacccag aatatgtaga atgcaaagta agttgtgctt gtggaaatac
      541 ttttacaaca aagtcaaaca aagcagaatt aagagtagat atttgttcaa attgccatcc
      601 tttttttaca ggcagtgaaa aaattgtaga tgctgcaggt cgtgtagaga aatttaagaa
      661 aaaatacgca atgcaataat tatgctttat tttattccta ctcccatagg aaatttaagc
      721 gatatttctt ttagagcctt agaactttta aagacttgcg atcttgtgtt ttgcgaagat
      781 acaagagtaa gtaagtcttt gatttcgtta ttaaatacca aatttcacac tgatatacat
      841 atttctaaat ttatagcctt acactcccat aatgaaaaag aagttttagc aagtattgat
      901 ttaaagatat ttgaaaaaaa tgtagcttat ttaagcgatg caggaatgcc agggattagt
      961 gatcctggca aggctttggt agaatttgca caagaaaata atatcaccta tgaaatttta
     1021 ccaggtgcaa atgcagcctt agttgctctt gtaagctcag cattttgtca aaaagaattt
     1081 atctttattg gttttttagc aaataaaggc aaagaaagac aaaaagatat agaaaaaatt
     1141 ttaaactttc cttatccaag tattatttac gaatccccca agcgtatttt atctttagta
     1201 gaacagatta tgattctaga cagccaaaga gaaatttttt tgattaaaga aatcagtaaa
     1261 aaatttgaaa aaaaatttaa aggcaatgct aaagagcttt ctgaaatttt aaaaaagtct
     1321 aatttaaacg gtgaatgggt tgtagtactg caatcaaaag agcaaaattt tttgcaaaat
     1381 actctttgtg aaaaagatat tatggattta gagctgtctt taaaagcaaa agcaaaatta
     1441 ttatcaaaga tcaatggaaa aaatgcaaaa gaaatttatc aaaaactgct tttaagtcaa
     1501 gattaggtaa aattttaata tgatagttta tgggaagcaa atattttttt atattttaga
     1561 atatcataaa gactgtatca atgagcttta tttagcaaaa gaatgtgata aaattacttt
     1621 ttccaaaatc gcaaaatcag gttttaaaat caaaaaactt gattttaaaa ctgctcaagc
     1681 ttatgcgaaa ggtggaaatc atcaaggttt tttgctagat attaaagaaa gttcttttgc
     1741 gaatttaaat gagatcaaaa aaaatgattt tattgttatg ctttatggaa ttagcgatgt
     1801 aggaaatata ggggctatca cgcgtacagc ttatgcttta ggggttgggg ctttaatttt
     1861 tattggtgaa aaattagcca tggaaggagt aattcgcaca agcagcggag cggctcttga
     1921 tttacctatt gcaataagca acgatgcttt aagtgtaata aacgaactaa aacaagtagg
     1981 tttttatttt tatgcgagcg atggctcggg aaaagaaatt cacagtgtaa aaataagcaa
     2041 tggtaaaaaa gttttagttt tgggtagtga gggttttggt ttaaactcta aaattataaa
     2101 aaagtgcgat gaatgtgtgg gcattgcgat gaaaaataat tttgatagtc ttaatgtcag
     2161 cgctgctttt gcaatacttt gtgataggat gttaaatgct taattggaaa aaaatacaag
     2221 aattaaattt aaaagaagtt gcagcaaaaa cgcaaattga acttgatttt cttgaagctt
     2281 tagtagaaaa gaattttgct gttttaagtc gttttaatgt taaaggtttt gttaaaattt
     2341 taagcagaga atacgaactc gactttagtg attttaacga agagtatgaa gcttatctta
     2401 acgaaaacaa tcctactcca caaacaaaat caaaaatgat aaccccaaaa ctagatgctt
     2461 atagtcaaaa atcctctaac gcttggcctt ttttgattgt tcttattgtt ttagtgatta
     2521 taggaagtgg aatttattat tttgatacac ttaaaacttt tttcaaagat gaacaaaata
     2581 atactagtgc aacggttata gacataatag gacaagcaca agaaaattta aaatctttaa
     2641 gtggaaacaa tgttgttgtt atagacaaca ataaagcaca agaaacaaat caaacagaga
     2701 gcgttttacc aagccaaaac acctcattac aagaaaatga taaaaacata agcatagaaa
     2761 ataatatcag tgaaaataac acaactctac tcgatgaaga aaaaaatacc caaatccaag
     2821 aagacacaaa tacactaaaa actgattctt taaaagaagc acattttaaa acctctacca
     2881 agatttggat aggtttgata gatttaaaaa gccttaaaaa aacaagcttt gttaaagaaa
     2941 aagattttaa tatttcttta gataaagatc agttaatttt aacaggggct gcagctttaa
     3001 caatgtttga tcaagaaaat aaagaacaaa aatttcctgt aggaatttca aaacgtttct
     3061 tgattaaaga tggaaaaatt accagtattt cagctgctga atttgtaaaa ttaaataaag
     3121 gtaaagaatg gtaaaaaaaa ttattattct tactttttgg gttaatatat cttttgcaat
     3181 ctcaagtctt gaattagcaa aaaatttagt aaacaatcct agtaaaaatt ctcaactaga
     3241 attattattc tcaaataatt cttacataga taataatgga aattgtgata ttgcaaaaat
     3301 atctcaaata ttaaaaacca attctttaat tgccttaaca ctatcaaatc ctcaaagtct
     3361 aaaactaaat tttaaagcaa aagctgatga agttatgttt tttaaaattt tatccgatgt
     3421 tttaacagat gccggatata tatattttat ccctacagat ttgattttaa gagaaggaaa
     3481 tattgactat accatacaag tagaatctca atatgtttta gatcctggaa cgctttacaa
     3541 tctcttaaaa gaaaattctg tctatataga taatattaag cgcattggag catatgacta
     3601 tgaatatgat ttaaattttt ccaatgctgt attaaaaacc aatacaaatg ttaatttaaa
     3661 tactccaaaa tcattagaaa aaccccttaa agactatgtg cttgatttaa aaaatgctac
     3721 aaatttgatt attgatgcaa atgatttaga caattggttt cctaaaatct tctttttaga
     3781 taaaaatctg aatctaatta aagcagtaaa aagcgaaaat aaaaataatc atttttcaga
     3841 acttattcca aatggtgcta tatatgctat tgtaagcgat atgtatagtt tagataatat
     3901 acgcaggggt ttaaaaatca cacttaaaaa ataaaggatt aagaaatgtt tgatgaaatc
     3961 cgttttaata ccatagaaag acttccaaat tatgttttcg cagaggtaaa tgcgataaaa
     4021 atggcagcaa gacgtgctgg agaggacatc atcgactttt caatgggaaa tcctgatggt
     4081 aaaactccac aacacattat agataaactt tgtgaaagtg ctaacaaaga taaaacctcg
     4141 ggatattcta catccatggg gatttataaa cttcgcttag caatttgtaa ttggtataaa
     4201 agaaaatata atgtcaattt agatcctgaa aatgaagttg tagctaccat gggttcaaaa
     4261 gagggttttg taaatcttgc aagagcgatt ataaatcctg gagatgttgc tattgtgcca
     4321 actcctgctt atcctataca tactcaagct tttattatag caggaggtaa tgtagcaaaa
     4381 atgcctttag cttataatga aaaatttgag cttgatgaaa atcaattttt tgaaaattta
     4441 cataaaactt taaatgaaag catcccgcgt ccaaaatata tcgttgttaa tttcccgcat
     4501 aatccaacaa cagtaacttg tgagaaaagt ttttatgaaa gattgataac aacggcaaaa
     4561 aaagaaagat tttatattat ttcagatatt gcttatgcag atttaactta tgatgactat
     4621 aaaactcctt ctattttgga aattgaaggc gcaaaagatg tagcggtaga aacttacact
     4681 ctttcaaaat cttacaatat ggcaggctgg cgtgtgggtt ttgtagtagg aaataaacgc
     4741 ttagtcagtg cgcttaaaaa aataaaatct tggtttgatt atggtatgta cacacctatt
     4801 caagtagcag ctaccatagc tttagatgga gatcaaactt gtgtggatga aatccgtgca
     4861 acttatgata aaagaatgca cattttactt gaagcttttg aaaatgcagg ctggaaactt
     4921 caaaaaccaa gagcaagtat gtttgtttgg gcaaaactcc ctgaaagcaa aagacattta
     4981 aaaagtttag aattttcaaa gcaactttta cagcgtgcca gtgttgcagt aagtcctggg
     5041 gtaggttttg gcgaagcagg tgatgagtat gtaagaattg ctttaattga aaatgaaaat
     5101 cgcatacgcc aagctgcacg caatatcaaa aaatatttaa aagaataagt tatgaaagta
     5161 gcgattcttg gttatggcac tgttggaagt gcggtggtta aatttctttt agaaaatgat
     5221 aaacttattc gtgcaagatg tgggcaaagc ataactcctg tgatcgctct tgctagaagt
     5281 cctaaaaaaa atgctttaat tccaattact catagcgttg cagaaatttt aaatgctgat
     5341 gtagatgttt ttgtagaatt aatgggtggg gtggatgaag cttttaaaat agtgagtgaa
     5401 attttaaaaa agaaaaaagc tgttgttact gcaaataaag ctatgcttgc ttatcatcgt
     5461 tatgaacttg aaaatttggc taaaaattta gcttttggtt atgaagcaag tgtggctgga
     5521 ggaattccta ttatcaaggt tttaaaagaa ggtttaagtg caaataatat tttggctata
     5581 aaagggattt taaatggtac gagtaattat attttaagtt ctatgagtca aaaaaatatg
     5641 agttttaaac aagctttgca aatagctcaa aatttaggtt atgcagaggc tgatccaact
     5701 tttgacatag aagggcgaga tgcagcacat aaactgcttg ttttatcaag tatcgcttat
     5761 aatcttaaag ctaaacctga agatattttg atcgagggta ttagtgaaat tgcacctgaa
     5821 gatatgtatt ttgctaatga gtttgaattt accataaaac ttttaggtat agctaaggtg
     5881 cgtgaaaata aagtagaatt aagggtgcat cctactatga tagataaaga aaaaatgctt
     5941 gcaaaagttg atggagtgat gaatgctata agcattaatg gagatttgtt gggtgaaagt
     6001 ttgtattatg gagcaggagc aggaggagag gccactgcaa gtgctgtgat ttcagatctt
     6061 atggatatag caagagatca ggtaaaagca ccaatgcttg gttttgtgaa cactttagaa
     6121 tacgagcttt taagcaaaga tgaaatttat acaaaatatt atttaagggt gaaagttgaa
     6181 gataaaatag gggttttatc taaaatcaca caattgatga gtgaaaataa tatttctatc
     6241 gatagtttct tacaaaaacc taaaaaaaat gatgaaaatt acagtacttt gttttttact
     6301 acgcatttaa cttatgaaaa aagcatacaa aatttgcttg aaattttacg caaacaagat
     6361 tttataaaaa ccaaaccttt tatgatgcgt atagattaat gggtttaaaa gcttatttag
     6421 atggaatttt aggtgaagat aaggcttgta aatttttaaa aaaacagggc tttgaaattt
     6481 taaaaagaaa tttctattct aaatttggag aaatcgatat aatagccaaa aaagatgaaa
     6541 ttttacattt tatagaggtt aaatttactc aagatgatta tgaagtttcc gagcgtttgg
     6601 atagaaaaaa acttgaaaaa attttaaaaa ctatagaatt ttatcatctt aaaaatggaa
     6661 tttcatcgga ttttcagatt gatctgattt gcattaaaaa tgatgtgata caattttgcg
     6721 aaaatataag tttttaagct gatatttaaa aaaataaaat acaattagac aaaaattaaa
     6781 gaaaggaaaa attatgggaa aatatattga attaacaagt gataattttg ctcaagcaaa
     6841 agaaggtgta gctttagttg atttttgggc tccatggtgc ggaccttgta gaatgcttgc
     6901 tccagttatt gatgaacttg caaatgactt cgatggtaaa gctaaaattt gcaaagtaaa
     6961 tacagatgaa caaggtgatt tagcagctga atttggtgtt cgctctattc ctacgcttat
     7021 tttctttaaa aatggtgaag ttgtagatca actagttggt gcacaatcta aacaagcaat
     7081 tagcgataaa ttaaactctt tactataaac
//
LOCUS       DARGEY010000068         7018 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.068, whole genome shotgun sequence.
ACCESSION   DARGEY010000068 DARGEY010000000
VERSION     DARGEY010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7018
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.068"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1434
                     /gene="pta"
                     /locus_tag="SF008_001236"
     CDS             <1..1434
                     /gene="pta"
                     /locus_tag="SF008_001236"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEG8233501.1"
                     /translation="KNYSKIYKNIAIYCPVIYIHRVPVLQGWLEEFNINQTVKSAYGF
                     TFREAMEEFSKDPHNFFNVILEEYEELKRKYDFVLVNSFCEFGILDGFDLSIKLAKNL
                     NTPIAAIINDEDKLIAQKYFDHALDGRNYVLINENFNFEEVQKLKEYDFITPHRFKYE
                     LIKQSIKNKKTVVLPESNDERILKAAEILLKSKVVDLILLGDEEKIKQDSAKLSLDLN
                     TIRIINPLKSEYNQEFASILYEARKSKGMSLEEARKLVQDKTYFGTLLIHTGKADAMV
                     SGASTTTAETIRPALQLIKTKEGISSVSGIFFMGLEDQVLAFADCAVNPSPSAEQLAT
                     SAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESVDLVKEALKIAKEKYPELNIDGPMQ
                     FDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAANICYKAVQRTANALAIGPILQGLK
                     KPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            1448..2638
                     /locus_tag="SF008_001237"
     CDS             1448..2638
                     /locus_tag="SF008_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEG8233502.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKIVKASGLVEKIGEQNSKVVLKNT
                     LNNESFERELTINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANAAIFDTAFHCTMPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAYVSSRAAKFLQKDQNELNVISAHLGNGASVCAIEKG
                     KSMDTSMGFTPLEGLIMGTRCGDLDPAILPFVSHLKGLTIEEIDTLMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGSYFAVLPKTDAIIFTGGIGENDSL
                     VRQKVCERLAHLGIELDFKLNKQRILGERMINHANSKVKVLVIPTDEELEIARITEEL
                     IGKN"
     gene            complement(2666..6419)
                     /locus_tag="SF008_001238"
                     /pseudo
     CDS             complement(2666..6419)
                     /locus_tag="SF008_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Eco57I restriction-modification methylase
                     domain-containing protein"
     gene            6568..>7018
                     /locus_tag="SF008_001239"
     CDS             6568..>7018
                     /locus_tag="SF008_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233503.1"
                     /translation="MKKFKEFSLRFLFKVSEQPVLIRDLLEANALFNDGMLVDPSKLN
                     FNFKILNSYIYFGVFCAVILLPLLLITHYFLTKLDFHISIVSAVMVTACVFIGYDIFK
                     VYIRKIISKKIIQKAWALHFPYFAYEKYSTMAGEFYKEALKEEIPKAN"
BASE COUNT         2331 a          900 c         1069 g         2718 t
ORIGIN      
        1 aaaaattata gcaaaattta caaaaatatc gcaatttatt gccctgtgat atacatacat
       61 cgcgttcctg ttttgcaggg ttggttggaa gaatttaata tcaatcaaac cgtaaaaagc
      121 gcctatggtt ttacctttag agaggcaatg gaagaattta gcaaagatcc tcataatttt
      181 tttaatgtta ttttagaaga atacgaagag ttaaaacgca aatacgattt tgtgcttgta
      241 aatagttttt gcgaatttgg aatacttgat ggatttgatc ttagtataaa attagctaaa
      301 aatcttaata cacctattgc tgctattatc aatgatgaag ataaacttat agctcaaaaa
      361 tatttcgatc atgctctaga tggtcgtaat tatgttttga ttaatgaaaa ttttaatttt
      421 gaagaagtgc aaaaacttaa agaatatgat tttataactc ctcatcgttt taaatatgaa
      481 ttgattaaac aaagtataaa aaataaaaaa accgttgttt tgccagaaag taatgatgag
      541 agaattttaa aagctgctga aattttattg aaaagtaaag ttgttgatct tattttattg
      601 ggtgatgaag aaaaaatcaa gcaagatagt gctaaattaa gtcttgattt aaatactata
      661 cggattataa atccactcaa atcagaatat aatcaagaat ttgcttctat tctttatgaa
      721 gcaagaaaat ctaaaggtat gagtttagaa gaggctagga agctagttca agataaaact
      781 tattttggaa ctttacttat acacactgga aaagctgatg ctatggttag tggagcatca
      841 actactacgg ctgaaacgat tcgccctgca ttacagctta ttaaaactaa agaaggtatt
      901 agttccgttt caggaatttt ctttatggga cttgaagatc aagttttagc ttttgctgat
      961 tgtgctgtaa atccaagccc aagtgctgag caacttgcaa ctagtgccta tgtaagtgct
     1021 atgactgcta aatcttttgg acttgaacca agaatagctt tgctttctta ttctagtggt
     1081 gatagcggta aaggagaaag cgtagatctt gtaaaagaag cattaaagat tgctaaagaa
     1141 aaatatcctg agttgaatat agatggtcct atgcagtttg actgcgctta tgatccaaaa
     1201 actgcagcaa agaaaatgcc aaattctaag atagcaggtc atgcaaatgt gtatattttt
     1261 cctgatctta acgcagcaaa tatttgttac aaagcagttc aaagaactgc taatgcttta
     1321 gcaatcggtc ctattttgca aggtcttaaa aaacctgtta atgatttaag tcgtggatgt
     1381 ttggtagatg atattgtaga taccgtaatt ttaagtgcaa tacaagctca atagaaagga
     1441 atgataaatg aaaattttgg ttttaaattc aggttcttca tcgattaaat ttaaattttt
     1501 tgataataaa atcgttaaag ccagtggatt ggtagaaaaa attggagagc aaaattcaaa
     1561 ggttgtatta aaaaatactt taaataatga aagttttgaa agagaattaa caataaataa
     1621 tcacgaagaa ggccttagta tagttaatga gctttttaaa gaatcaggaa ttttagcaga
     1681 tttaaatgca cttgatggct gcggtcatcg tatagttcat ggaggaagaa atttaagcga
     1741 gcattgttta gtggatgatt atgttcttaa agagatagat agggttagta tttttgctcc
     1801 tttgcataat cctgcgcatt tagcaggtat aaaaacaatg atcaaagctg cacctagtgt
     1861 tgctaatgca gctatttttg atacagcttt tcattgcact atgcctgatt ttgcttatat
     1921 gtatgctttg ccttatgatt tttatgataa gcataatatt agaagatatg gttttcatgg
     1981 gacttctcat gcttatgtta gttctagagc ggcaaaattt cttcaaaaag atcaaaatga
     2041 attaaatgtc atctctgctc atcttggaaa tggtgcaagt gtatgtgcta tagaaaaagg
     2101 taagagtatg gatacttcta tgggctttac tccacttgaa ggacttatta tgggaacgcg
     2161 ttgtggagat ttagaccctg ctattttacc ttttgttagt catcttaagg gtttaactat
     2221 agaagaaata gatacactga tgaataaaaa aagtggagta tatggaattt gcggttataa
     2281 tgattttaga gatatagaaa gagagataga acaaggtaat gataaagcac gcttggctct
     2341 tgatatgttt tgttatcgtc ttgttaaata tataggatcc tactttgctg tgttgccaaa
     2401 aaccgatgct attattttta caggtggtat aggagaaaat gatagtttgg ttcgacaaaa
     2461 agtatgcgag agattagctc atcttggtat cgagttagat tttaaactta acaaacaaag
     2521 gattttgggc gaaagaatga taaatcatgc aaattctaaa gttaaagtgc ttgttattcc
     2581 tacagatgaa gaattagaaa tcgctagaat tacagaagaa cttatcggta aaaattaaat
     2641 tttaaaaact atataaatct ttcatttata tagtttttag caaggttata tattcacttt
     2701 gcttttcatt taaaacttta aaagtgctta tcatgtaaga aaattcatca tcacttaaac
     2761 cataaagttc tttaaccaat aaatcatttt ttgctcttaa gatatcataa gcctttttag
     2821 tttttggaat ttcttcattt tttatattaa attcttgttt tagctcatca aaatgacgat
     2881 tttgatcatt gtaaagctgt aaaagcaaag catttttagc gagggtttta taaatttcat
     2941 tgttttgaat ttcttcatca cttggttgag gcaggggaat tctttctaaa taagatttgc
     3001 ttacattgat ttgcaccata tttcttatga taaaatcaac cactaaagaa ttaaacaaag
     3061 ctaaaacaaa taaaattctt tcataaggca ctatatccat gcaaattaca tcatctttta
     3121 aaacatattg ttttggaatg ttactataag tactatcagc tccaccgcaa ttttttggca
     3181 ataaagaagc tatcaaagtt ctctcatttg tatcacttgc aatttttcta tatccgagtc
     3241 taaaaaattc tctatcgtat tttattaatt taggatttaa ttctttccca gtagcttttt
     3301 tagctctata aagttcttta ctttttaaac gctcatcaaa tttagccttt tctaaaaaat
     3361 aagtagcttg gctaaaattt gcatcaaatt gatgtatcat tttaccttca tataagggta
     3421 aaagtccttc cctaaactct tctataaaca aatctttatc gtttgtcata tcaagttctc
     3481 ttctaaaatc tatataatca aaagacaagt tttgaaaagc attataagat tttcttagaa
     3541 tttctaaagc ttgtttgtct tttaacttca ttaaggctag gtgagttggg cttagctttt
     3601 tgatatcttt taaatttaga gttaaaattt catctttgtt ttttaatgag tttatatctg
     3661 ttttataaaa catcattttg attttatgag tgtgatttgc ttgcgtgttt tttataagca
     3721 taagagcaaa tttatacctt gaatccacat cagcaaatat agcttgtcta ttttcaaaac
     3781 tataaaaata ctctaaagtt ttattttcta aaatttcttt tcttaaagtt aagcttccat
     3841 cttcaaacat caaagcacta ggaagtacat aagctaaatt tccatcttgt tttaaaagag
     3901 aaagattttt ttctacaaaa agacgaaata aatttccatc tccactgcct ttgtttaaag
     3961 gataggtttt tttataatac tcgtttaaat catttatata tgctttttgt ttttcgtaat
     4021 tttgctttat ataatctttt gctagcaaat tgtcttgaat ttcttttttc ttgctagcga
     4081 ttaagcttct ataatcgctt ttgtattgtg gaaagaaatc gctatcacta aatttagttt
     4141 tatcccaagg tggattacct ataatgatat caaagccttt aaagacttga ttttctgtga
     4201 tttcaggaaa ttctaactca tagttaaaga agttaaattc tttttgatat ttgctaatga
     4261 tagcttttgc ttgttcattt tggcttaaat tttgtatatc atcttgactt agggctttta
     4321 gaatttgtaa ttcttctttg ttgacaaaat gaagcgtgtt gatatagttt agatataaat
     4381 ttagtttatt aagttttggt gtgatttcat tttgatagat ttgtttggat tgtttgattt
     4441 gttcttcgtt ggtatctttt aggttgtcaa gtttttcaaa tacttcttgt aaaatttcaa
     4501 attcttgtgt tatggaattt gtaaaaaggt tgcttgagtt ttgttttatc aaatctttaa
     4561 aatcacttag attagaattt atcaaagcat tgccgcactt tatgtggtgt tctataaaag
     4621 aaagtggggt tgtaaagata aaactatcta tccaaaggct aagtttagta agctctatgc
     4681 taaaagggtt taaatccacc ccataaataa tgcgttttag taaaagtcgt tttaaaatat
     4741 cactctcatc tacttcatag tcttgcacaa aatcttttat atagtttaaa atattttctt
     4801 tttcttcttc gtaaagttct tttaaatttg taaaatgatc aaaatctgat aaaacaatgt
     4861 gtgtaatagc atttaaaact ccaactaaaa aatgtccact accgcaagca ttgtctagta
     4921 ttttaaattt caaaatattt tcattgttta gtttgtcttt taaagcactt tggattaaaa
     4981 aattagctat ggattgaggt gtgtaaaagc ttgcgcttgc ttttcttgag ttgctagtat
     5041 ttttaaggta aatttgtcct tttttgtaaa aggtgtattt ttctactttt tttgattttt
     5101 ctaaaatttt aaaatcataa ttatcaaaat aacattctat ttcttttgat ttttctttat
     5161 aacttacata gtaaatatct tcatttgcta tttcaaaaaa ataagaaagc aagccttcat
     5221 aaatcgtgcc taaatgttct acacttaaag ttttgtaatc tcttttaaag cttagatttt
     5281 tatctttaaa atttaataat tggtttaaaa tgaattttaa atctttatcg ttaaagattt
     5341 ttggcgtgct taaaagagcg gttttgcttt catcaaacaa accgccatta aaaacaggca
     5401 tgtcaaaatt gcctttgcct ttgttgtaaa tgttgaaaat attttcaagt tctccaaagc
     5461 caccacttga gctttcatct tcttgtaaat tttcaagtaa ggttctaaga ctgattttac
     5521 ttttaaaata cttatgtttt tccagtataa tttcaaattt atcttcaaaa taagcaataa
     5581 ataaaagcct aaagataaaa tataaagaat tttcatagat tagttttaaa tccgcctttg
     5641 ttttattgta aattctagag cctatgaatt caaataaaga ttcatttcca ttggttccgt
     5701 aaatgataga ttttaaatca tcttctattt tgatttttga aagtttattg ttttgtagag
     5761 ttatttctaa atgatcttct ttttctgtga aattaaaagc gctaaataca ctataaaaat
     5821 acgcaaaagc ttcaatattt tgatcttcaa tgattttttc tagattgatt tcgtaaaaaa
     5881 ctttgtttga attcagtata gaattatcat aaaaacgcca aaatctacca ttggttaaaa
     5941 aaccataatt tttcttaaga ttgcctagat atcttagaat ttgaaagtga gggttgtctt
     6001 ttactttttt tattgtctat ttctatatta taagcttttg actctaaaat gattgtgaaa
     6061 tcattgcttg atttttttgt ttctttgtct aaattttcgt attttgtttt taatttttca
     6121 ttgctaaaaa gtagaaaatc aggtttttcc aattttcctt gtatgatttt ttcatcttgt
     6181 cttacaaagc accactctaa aatttctaat acttttgata taaattcatc ttcaaattga
     6241 tgttcgtttt gttttataaa tttgtttttg tcgtaaattt ttgtaatttt agttaaaata
     6301 tctctaaagg ctttttgatt tgcgttgaaa ttataaatct taggaaagtc aatttctaaa
     6361 gaatagcttg taaaaagatt attgttgagg tattttttaa gttcttgata gtaattcatg
     6421 gctttctttc taaagtattt ttaaaaattt gacattttaa attatatcta aaaaatttaa
     6481 agacttgtgc ttatttatga aaatgatttt ttagttggaa ttaattttct ttggataaaa
     6541 ttttaattaa aaaataaagc gtggattatg aaaaaattta aagaatttag ccttcgtttt
     6601 ttatttaaag tatcagagca acctgttctt ataagagatt tattagaggc aaatgcactt
     6661 tttaacgatg gaatgcttgt agatccttct aagctaaatt ttaatttcaa aattctaaat
     6721 tcttatattt attttggtgt tttttgcgct gtgattttat tgccattgct tttgattact
     6781 cattattttt taacaaagct tgactttcat ataagcatag tgagcgctgt tatggttact
     6841 gcttgtgtat ttataggata tgatattttt aaagtttata ttcgcaaaat aatctcaaaa
     6901 aaaataatac aaaaagcctg ggctttacac tttccttatt ttgcttatga aaagtactct
     6961 acaatggcgg gtgaatttta taaagaagct ttaaaagaag aaattccaaa agcaaatt
//
LOCUS       DARGEY010000069         7016 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.069, whole genome shotgun sequence.
ACCESSION   DARGEY010000069 DARGEY010000000
VERSION     DARGEY010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7016)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7016)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7016
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.069"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(12..881)
                     /locus_tag="SF008_001240"
     CDS             complement(12..881)
                     /locus_tag="SF008_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233504.1"
                     /translation="MKIDTSASLTHSLTNNVDKKELSVLKKEDQDKIPVQDLSSLNSD
                     GVKVVFENKQGELIALNLSDENYSSLQKNFGSYMNYVARNDGSIRLNGEANQFVSNWF
                     ESVKNNFGSLNSNLNNKQQSVKLNFNTSTLQQSMQNLGFKTSDEKISDDANIEEKLNF
                     FIDKDVNKDGKVDDSDVKEPSMREILSDIKEASGGGANAMKTIDPQKINKKDDKENNI
                     KEKGDEDLLQKAQEKGLSALSADEQAKLEASNPEEFEKLKQKSLQELSQNLSKDFQNK
                     IENQEAQIVDKRV"
     gene            complement(885..1046)
                     /locus_tag="SF008_001241"
     CDS             complement(885..1046)
                     /locus_tag="SF008_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233505.1"
                     /translation="MLKIILILSILSSFAFANSCANYEQELKKCNSLKNSHERKMCRL
                     GLFAKCKKG"
     gene            1141..2124
                     /locus_tag="SF008_001242"
     CDS             1141..2124
                     /locus_tag="SF008_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MnmA/TRMU family protein"
                     /protein_id="HEG8233506.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMVGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGISGRSRKRQLELAAKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEVIELGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEVGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            complement(2210..3298)
                     /gene="aroC"
                     /locus_tag="SF008_001243"
     CDS             complement(2210..3298)
                     /gene="aroC"
                     /locus_tag="SF008_001243"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEG8233507.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLCEFGICVQSGVFGIGTFV
                     SNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLVGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSYNNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLEFELKGRHDPCVGVRGSVVASA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(3298..3972)
                     /locus_tag="SF008_001244"
     CDS             complement(3298..3972)
                     /locus_tag="SF008_001244"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEG8233508.1"
                     /translation="MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENN
                     GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            complement(3959..4399)
                     /gene="rnhA"
                     /locus_tag="SF008_001245"
     CDS             complement(3959..4399)
                     /gene="rnhA"
                     /locus_tag="SF008_001245"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HEG8233509.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            complement(4386..5372)
                     /locus_tag="SF008_001246"
     CDS             complement(4386..5372)
                     /locus_tag="SF008_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233510.1"
                     /translation="MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFASKDEEQKL
                     EKFIKKFEMDNAHKELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKCKDKQ
                     EREFIFLSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLE
                     LLECLFELNEDVQKESDFIKALELCTFNITDEEKKKKLLEFKIEDNPMLGRLVFEKYH
                     MFLGQNFFDICDLLYRENEAFNLENQDFLEFFYALGKISKHDDTHQFVFKNSNFKMLK
                     ILKDNSFNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEVKNNETH"
     gene            5442..>7016
                     /locus_tag="SF008_001247"
     CDS             5442..>7016
                     /locus_tag="SF008_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEG8233511.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCICPFHADKN
                     PSMHINPTKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     QNQKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALEAIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEKIHIAELELIAFLK
                     QHPDICNDFKQISDSVCFKHKILLDKILEKKGYEDSDIREFESKNIRKNLNYSEFLLG
                     ICKVNLAFLNNVKIKNS"
BASE COUNT         2459 a         1221 c          907 g         2429 t
ORIGIN      
        1 attataattt gctacactct cttatctaca atttgtgctt cttgattttc aattttattt
       61 tgaaaatctt tacttaaatt ctgacttaat tcttgcaaag atttttgctt cagtttttca
      121 aattcttcag gattgctagc ctcaagcttt gcctgctcat cagcacttaa agcacttaaa
      181 cctttttctt gagctttttg aagcaaatct tcgtctcctt tttctttgat attattttcc
      241 ttatcatctt ttttattgat tttttgcgga tctatggttt tcatagcatt agctccacca
      301 cctgatgctt ctttaatgtc gcttaaaatt tctctcatgc taggttcttt aacatcacta
      361 tcatcaactt taccatcttt atttacatct ttatcaataa aaaaatttaa tttttcttct
      421 atatttgcat catcagatat tttttcatcg cttgttttaa agcctaaatt ttgcatactt
      481 tgttgaaggg tacttgtatt aaaatttaat tttacacttt gttgtttatt atttaaattt
      541 gaatttaaag aaccaaaatt attttttaca ctttcaaacc aatttgaaac aaattgattt
      601 gcttcgccat taagccttat actaccatca tttctagcaa cataattcat ataagaaccg
      661 aaattttttt gtaaactact ataattttca tcgcttaaat ttaaagctat aagttcacct
      721 tgcttatttt caaaaacaac cttaacacca tcgctattta aactcgaaag atcttgcacg
      781 ggaattttat cttgatcttc tttttttaat acgctaagct cttttttatc aacattatta
      841 gttaaagaat gggttaaact agcagaagta tcgattttca ttatttatcc ttttttacat
      901 tttgcaaata aacctaaacg acacattttt ctctcatgtg aattttttaa agaattacac
      961 tttttaagtt cttgctcgta gttagcacaa gaatttgcaa aagcaaaaga actcaaaatg
     1021 cttaaaatca aaattatttt taacactttc caatccttat tttaaagatt ttttagttaa
     1081 aattatacct tttataatcg acaaaatctt aaaaaacttt ataatctcag aaaggaatca
     1141 atgaaagcat tagctctttt tagcggtggg cttgatagta tgcttgcaat gaaactcatc
     1201 actgcacaag gcatagaagt taaagctcta aatatcaaca taggttttgg aagcacaagt
     1261 gataaaagcg aaatcatgaa aaagcgtgca gcgatggtag gtgcggattt tgaaatgata
     1321 gatgtaagaa attcctatct tcaagaagtg ctttttaatc cacaatatgg ctatggcaaa
     1381 cattttaatc cttgtataga ttgtcatgct tttatgttta aaactgctct tgctatgtta
     1441 aaagaagaaa atgcaagttt tatcatcaca ggagaagttt taggacaacg ccctatgagt
     1501 caaagaagtg atgcaatggc aaaggttaaa aaacttgctc ttgatgaaga agatttaatc
     1561 ttgcgtccta tgtgtgcaaa aaacctacct ctaaccaaac ctgaaagaga aggttgggta
     1621 gatagagaaa aactcgaagg tattagcgga agaagtcgta aaagacaact tgaacttgca
     1681 gctaaatttg gattagaaga ctttgaaagc ccaggtggag gttgtttgct aactcttgat
     1741 agttttgcta aaaaaattcg agatttcata gaatttgaca aagatatgca ggttaatgac
     1801 gcacaacttt taaaatatgg tcgtcattta agattaccca atggagctaa aatgatcata
     1861 ggtagaaatg aacttgaaaa tactctttta aaaggtttaa aaactcctaa atatgaagta
     1921 atagaacttg gagatttaat cggagcttac tctttggtag atgaaaaaat ttcagaaaaa
     1981 gacttagaac ttgccttaaa aatagccctt acctatacta aacacgaagt aggaaaaagc
     2041 tatgaactta aatttaaaaa tcaagcttat acaagtatag cttttgaaaa taaggctgat
     2101 attaatcaat tttttattag ttaaagtata aagtatttag caaaacaagc gatatagtat
     2161 ttgaatcttt tcaaaatatt gcaatcaagc ccatgaaaat gggctttttt tattttaatc
     2221 cataagcatt ttttaaattg tttaaattcg cactcgcatt caaaagcaaa caatcagcca
     2281 aaactaaacg caccatagca ctagctacaa cacttcctct aacacctaca caaggatcat
     2341 gcctaccttt gagttcaaat tccaaattat tgccaaattt atctatactt tcttgcttgg
     2401 caaaaataga aggagtaggt ttaaaataag tttttaaaat aagattttct ccatttgaaa
     2461 ttcctcctaa aattcctcca ctatgattgc ttaaaaactt gccatctttt aaagcatcat
     2521 tattatacga tccgcgcatt ttacttgcat taataccttc gcctatttca actgctttaa
     2581 cagcattaat tcccattaaa gcatgagcta atttagagtc taacttatca taaagaactt
     2641 ctccaagtcc cacaagcata ccactaactt ttgtaaaaac agcagcgcct acactatctt
     2701 ttgaatttct agcatttaaa atttcatttt taaagtcact ttctagtttt ggatcaaggc
     2761 aaaaaatttc acttttctta gcaaattcaa aatcaaattc ttcttctttc aaatttgata
     2821 caaaagttcc tattccaaaa acaccacttt gaacacaaat gccaaattca cacaaaagca
     2881 tcgctgcaac tgcaccacca gccactctag caacactttc cctagcgctt gatctacccc
     2941 cacccctatg atctcttatg ccatatttat aaaaataagt aaaatccgca tgagcaggac
     3001 gaaatagatc ttttaaatta tcataatctt tagaatgagc attttcatta aaaactacta
     3061 tagctatggg atgacccgtt gtatatcctt caaaaacccc gcttaaaacc tgagctttat
     3121 cgctttcttt tcttggtgtt gcaaatttac ttccgccttt gcgtttatca agctcatttt
     3181 gcaaaaattc ttcatcaaat ttaaccccag caggcattcc atcaataata catccaacag
     3241 ccacaccatg agactcacca aaacttgtaa atttcaatct cgtaccaaag gtattcacta
     3301 taaagctcct aatttctcaa gtgcaatttt tgctgccatt tgctgtgctt cttttttgct
     3361 tcccgcaata gctcttgcaa gttctttacc atcaagcatt aaagcgattt caaattgctt
     3421 taaatgatca ggaccaaaag cacgcactgt ttcatactgc ggagtttgtc cgatttttcc
     3481 ctgtgtaatc tcttgtaatt ttgttttata atcttttata agaatttttg catcaatttg
     3541 agggaaattt ttttctataa gtcttaaagc aatagttttt gcaaactcaa acccagcttc
     3601 taaatgtata gcacctataa tggcttctaa cgcatctgaa agtatagaag gcttttcttt
     3661 tcctccattg ttttcctcag caacactcat aaaaataaaa tcacccaaat ttaaactatt
     3721 tgcaattttt gcaaaagact tttcattcac taaagccgct ctaagcttag ataaatctcc
     3781 ttcggcatct ttggcgaatt tatgaaaaag gtattcacct acaactaaat caagcacggc
     3841 atcacctaaa aattccaagc gttcgttgtt gtaagatttt ttaaaacttt tatgggttaa
     3901 agcatgtata agaagatttt tatctttaaa ttcataagtt aaactctgct ctagcttttc
     3961 aatgtttttc atcattttcc cttgcaattt tcaaagcagc ttcacgcgcc aatgtatcac
     4021 acctttcatt ttccaaatgt ccattatgtg cttttaccca aaaagcctta atcttatgag
     4081 attttgccac tttaatatat tccttccata aatctatatt ttttttacct ttaaaatcct
     4141 tttttatcca tccttctagc cattcattaa tactttgaac cattaggtta gaatctgtaa
     4201 aaagcgaaat ttcacaaggc tcttttaaag ccttcaaaga ttcaataatt gccattagct
     4261 ccattctatt gttagtggta ttagcctcag ctccaaaacc ttccttttga tactccttat
     4321 aacgcaaaat ataagcccat ccgccaaaac ctggattatt aagacatgag ccatctgtat
     4381 aaatttcaat gtgtttcatt gtttttcact tcataaataa ttttacaagt attaaactca
     4441 taacaaacag gacagtgata aaaaaacaaa ggcattacat ttttacactc agaacaacga
     4501 tatgaaaatt ctaaccccgc attaaaagaa ttatctttta aaatttttaa cattttaaag
     4561 ttagaatttt taaaaacaaa ctggtgcgta tcatcatgct ttgaaatttt acccaaagca
     4621 taaaagaatt ctaaaaaatc ttgattttct aaattaaacg cttcattttc tctataaagc
     4681 aaatcacaaa tatcaaaaaa attttgccct aaaaacatat gatatttttc aaaaactaaa
     4741 cgccccaaca taggattatc ttctatttta aattctaaaa gttttttctt tttttcttca
     4801 tcagtaatat taaaagtaca aagttctaaa gctttgataa aatcactctc tttttgtaca
     4861 tcttcattaa gctcaaaaag acattctaaa agttctaaat tttctttata agaacgaagt
     4921 tttaaataaa caatttttaa aagttttaag gcttgtatat ttcttggacg cagttttaaa
     4981 gcttgtaata aaacttcttt tgcacgctct aaaaatcctg ctttaaaata aacttttgct
     5041 aaagaaagga aaataaattc tctttcttgt ttatctttac atttttcaag agcaatcaaa
     5101 taaatttgag ttgctttttc aaattccccg cttttagtaa aaatttcagc caaaaaactt
     5161 aaatttccaa aactcaagct actatttctt aataactctt tatgagcgtt atccatttca
     5221 aattttttta taaatttttc aagcttttgt tcttcatctt tgctagcaaa tattttccaa
     5281 atataatttg caacagctac aacaaatact aaaatggtta aaattataag ccctactaaa
     5341 gggtctctgt attctacaaa gaaaaaatcc atagtctcgc tctaaaaatt ttatgccaaa
     5401 ttatagccaa atctttgtat aattttaaca aggtttgtaa aatgataact aaagaaagta
     5461 tagaaaattt atcccaaaga cttaatattg ttgatattat agaaaattat attgaagtaa
     5521 aaaaacaagg ctctagtttt gtgtgtatct gtcctttcca tgcagataaa aacccgtcta
     5581 tgcatatcaa tcctaccaaa ggtttttatc attgttttgc ttgcaaagct ggtggagatg
     5641 cttttaaatt tgtaatggat tatgaaaaat taagttttgc cgatgcagtt gaaaaagttg
     5701 caagccttag taattttact ttgagttata caaaagaaaa acaagaaaat aaaaaagagc
     5761 taaagtctat actaccaagc ttaaatgcgt attttaaaga taatctcaaa caccacaaag
     5821 aagttttaac ctatctttac cagagagctt taaatgacaa agatatagcc aaattcgaat
     5881 taggttttgc aggagcaagt gaagatagta taagattatt gcaaaatcaa aaaattcctt
     5941 tagaagatgc tatgagtgtt ggagctttaa aaaaagatga aaataatgaa ttttacgcaa
     6001 gttttatatg gcgtatcacc tttccaatct acgatcataa agacttattg gtagggtttg
     6061 gaggacgcac tttaaatccc aatgtaccgg caaagtatgt aaattcaccc caaaatatac
     6121 tttttgataa aagtagaatt ttttatgctt ttaacatcgc taaagaaaat atagccaaaa
     6181 aaaaagaaat aatagtatgt gaaggctaca tggatgcaat agcttttcac aaagcagggt
     6241 ttaacaatgc tgtagcagtt cttggaacag cattaaccga acatcatcta cccttaatcc
     6301 gccgttatga tgcaaaagtg attttatgtt ttgacaatga tgaagcagga ttaaaagctg
     6361 cgacacgatc tgcattttta ttaagcacaa acaaaataga cggtaaagtg gcaattttgc
     6421 aaggcggaaa agatcctgct gagctcgtag caaaaaatga aagcacaaaa ctccataata
     6481 tactcgatga aggaatagag cttggtgaat tttatatcag acgcttaata tccactcatt
     6541 ccataatttc tgctcttgat aaacaaaaag ctttagaagc tatacaaaaa ttcaccttta
     6601 atcttgaacc tttagtggca aattcttaca ctagtctagt ttcaaattta ttaaaagtgg
     6661 atgaaaaatt tattgtctta tcacaaaatt caaaaaaaac catacaaacc cctttaattt
     6721 ctcaaaataa atacaatttt cctaaagaaa aaattcacat tgcagaatta gaacttatag
     6781 cttttttaaa acagcatcca gatatatgta acgattttaa gcaaattagt gatagtgttt
     6841 gttttaaaca taagatttta ttggataaaa ttttagaaaa aaaaggttat gaagatagtg
     6901 atattagaga atttgaaagt aaaaatattc gaaaaaattt aaactatagc gaattcttgt
     6961 taggtatttg caaggttaat ttagcttttt taaacaatgt aaaaattaaa aattct
//
LOCUS       DARGEY010000070         6980 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.070, whole genome shotgun sequence.
ACCESSION   DARGEY010000070 DARGEY010000000
VERSION     DARGEY010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6980)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6980)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6980
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.070"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..871
                     /locus_tag="SF008_001248"
     CDS             <1..871
                     /locus_tag="SF008_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8233512.1"
                     /translation="FLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKI
                     NIPIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGE
                     KNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENT
                     YVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYF
                     NFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDSFFEQGVK
                     FEVISFDKFSLGF"
     gene            complement(868..1599)
                     /locus_tag="SF008_001249"
     CDS             complement(868..1599)
                     /locus_tag="SF008_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HEG8233513.1"
                     /translation="MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKM
                     NEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLIMIKNKYRIENLYDFAE
                     YKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHK
                     IKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKG
                     YYINLITKIIKRYNLEKYDTNSNNT"
     gene            complement(1574..2323)
                     /locus_tag="SF008_001250"
     CDS             complement(1574..2323)
                     /locus_tag="SF008_001250"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEG8233514.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEEVGFAYKNEELFFEGKVKYCFEANYNFS"
     gene            complement(2320..2925)
                     /locus_tag="SF008_001251"
     CDS             complement(2320..2925)
                     /locus_tag="SF008_001251"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEG8233515.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHEILDENA
                     LELEKIFSPFSLKNLLTKEKKIDRKILGKIVFNNKEAKKTLENFTHPKIRAKILEQMQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLD
                     SQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM"
     gene            2986..3975
                     /locus_tag="SF008_001252"
     CDS             2986..3975
                     /locus_tag="SF008_001252"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEG8233516.1"
                     /translation="MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDIL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE"
     gene            4546..4947
                     /locus_tag="SF008_001253"
     CDS             4546..4947
                     /locus_tag="SF008_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233517.1"
                     /translation="MALIFPFLKAFYYEIARTTKQKYFTYAFNTFYLGLLTLIIGIGL
                     VFLLASLVFWILAWVKFKEFDEQELSNLEERLAKAQKKVFDFDLKWIKITMASFIILN
                     LLVLTFSFILEVISFEDFRFYYTKKLYFIQP"
     gene            complement(5900..6765)
                     /gene="dcuC"
                     /locus_tag="SF008_001254"
                     /pseudo
     CDS             complement(5900..6765)
                     /gene="dcuC"
                     /locus_tag="SF008_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856491.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
BASE COUNT         2357 a          919 c         1054 g         2650 t
ORIGIN      
        1 gtttttagat ttatatgata cacgctttga aaaacaaagt ttagaaagac ttgctgattt
       61 tctgaatgaa aatttacaaa ttaaaattct ttgcctttat aatttggatt ttatccctaa
      121 tttagaaaaa attaacattc ccatcatctt aagtacaaat ataaaagatt taaatgtaaa
      181 tgggtttgaa gagcttgaac ttgattattt tgattttgaa gaatttatta gtgtaagtaa
      241 gaaaaattta cctataaata atttagtagg tctttttttg caaagtggac gcagtaaatt
      301 tggagaaaaa aacatacttc taagacaaag ctttactctt ttagaattag aaattttaaa
      361 gtatttagct ttaaatttgg gtcagcaaat cagtatttct aagatattta tagaactcaa
      421 aaaaagatta aaaacttcaa aagatagtgt ttatcaagct atcaaaaaat tagaaaatac
      481 ttatgtgatt tataccttaa aacatgatga aaaaaaactt caaaagattt attttaaaga
      541 ttttggccta agaaataatc tttgtatttc aaaggatttt tcacatttat ttgaaaattt
      601 agttttaagc gagttgttta aatttaaaga agaatttttt tataacaaat actttaactt
      661 ttatagccaa atatctaaaa ttgcttatat ttcaagtcca actttagata ttgatttgat
      721 taaattacgt gctaagaaaa ttttaccaaa ggctttagaa cttggaattt ttcatgtgat
      781 ttttatcact ctttcaagcg aggatagttt ttttgagcaa ggggttaaat ttgaagtcat
      841 atcttttgat aaattttcac ttggatttta ggtgttgttt gagtttgtat cgtatttttc
      901 aaggttgtat cgtttgatga tttttgtaat aagattgata taatatccct tgcgttcaga
      961 ataagaatct aaagttttaa tagcctctag tcctgttatc tctttgcctt cgcttgcaaa
     1021 tttagctctt gcatcgcgaa acttttcata agcaaaatga cgatttaaat ttaaaacata
     1081 agagtaaaca ctatcttgca gactatcaaa aatcttaatt ttatgttttt tatctggatg
     1141 tcttaaatca ggaattaaac ctttctcacc ccaagtccat tctccaaaaa gattgtttgc
     1201 ttctcttgcg aagcgactgg tacctgtagc actttcaact aaagcttggg ctatacccat
     1261 ggattttgga attttttgaa tacgtttttt atattctgca aaatcataaa gattttcaat
     1321 acgatatttg ttttttatca tgataagttt ttcaagattt atttggtttg aagtcctaaa
     1381 gcctgttttg taagcatctt taaaaaaggc ttcgataaaa gctctttctt gttcaatttt
     1441 tttaaagctt tgatcaaaca tttcattcat ttttataaaa aaaatttgtc ttttttgatc
     1501 tatatcaagt ttgtaatatt cctctccaaa gccatttttt agatcatcag caaaaagtgg
     1561 gattagaaaa agactaagaa aaattataat tggcttcaaa acaatacttt acctttcctt
     1621 caaaaaacaa ttcttcattt ttatatgcaa accctacctc ttcaccactt ttaggagtta
     1681 ttttaacttt attttgtact tttttattta aaaatgccag ataaaaacaa gcccccattc
     1741 ctgtgccgca agctaaggtt tcatcttcaa ctccgcgttc ataggtgcga acttttaaat
     1801 gattttcatc taaaattttt acaaaattaa cattggcatt atatttttgt ctcatttttt
     1861 gacaaagcat tgtatcaaat tcatctaaat tttgacaaaa atgtactaga tgtggaactc
     1921 cagtgttgca aagttgccaa gtttttccta attcttcaaa agtattttgc acgcttttta
     1981 ttttgcctaa agatacttca actttatctt gatttacctt tgcttttatt actcctgcac
     2041 cggttaaaaa actcatgtta ggatttattt tgttaatatg atgtgcaaaa tgtgccgcag
     2101 cccttgagcc atttccacac atagcagccc ttgagccatc gttattataa aattcccatt
     2161 caaagtcgta tttttcatga ggcaatatca cgataaagcc atccgcacct ataccctcat
     2221 aacgattaca aagttcttta gctaaagcac ttctatcttc ttttctatca gcatttgtta
     2281 tgacaaaatc attcccactt gcacaatatt tataaaattt cacatttttc ctttagaaat
     2341 ttcttgtatt actttaacac attcttgcct aaaatcggca taagaattag tatttttaat
     2401 gataaaatct gcttttttaa gtttttcttc aatatctatt tgagaatcaa gtcttgcttt
     2461 tgcagcttct aagctgagct tatctctttg catgattctt ttaaggctta attctttagg
     2521 tgtgtaaatt acaatgactt tgcctaaatt ttcataagca ccgctttcaa aaaaaagagg
     2581 aatttctaca aaaaaagctt tattttcctt atctagaatt tgcatttgtt ctaaaatttt
     2641 agctcgaatt ttaggatgag tgaaattttc taaggttttt ttagcttctt tgttgttaaa
     2701 aacaattttt ccaaggattt ttctatcgat tttcttttct tttgtgagta aattttttaa
     2761 gctaaaggga gaaaaaatct tttcaagttc taaagcattt tcatctaaaa tttcatgagc
     2821 gattttatct gcactaatgc ttttaaagcc taaagaattc gctatttcta taaaggtgct
     2881 tttaccacaa gcaattgaag cggttacaaa aaaagcattt ttcatcttat gccttattaa
     2941 aacttttttc gttaaaataa ctttttagtt cttaaaggaa aataaatgaa aatttcatat
     3001 gaagatgcag gcgtaagtat agataatgga aatgcctttg tagaggctat aaaacctttg
     3061 gttaaagaaa cttttaatga taatgttgta ggtggaattg gttcttttgc tggtgctttt
     3121 agaatgccaa gtggttttaa aaagcctgtg attttaggtg caacagatgg ggttggtacc
     3181 aagcttcgct tggcaattga tgctaaaaaa tatgatacta tagggcaaga tttagtagca
     3241 atgtgtgtga atgatttgat ttgtaatttt gctacgcctt tgtttttctt agattattat
     3301 gctacagcta agcttgaagt agaagtagca aaggctgttg tatcaggcat tgccaaggga
     3361 tgtaagatgg caaattgtgc attaattggc ggagaaactg ctgaaatgcc tggaatgtat
     3421 gcaaaagatg attttgatct tgcgggtttt gctgtgggta tggctgaaga agatgagatt
     3481 gatagaagta aatttgttaa aaatggtgat attttattgg cacttcctag ttcaggactt
     3541 cattcaaatg gttattcttt agctagaaaa gtactttttg aaagtttaaa attaaaattt
     3601 gatgacaaga tagagggtaa aaatttaatt gatattttgt tagaacctac aaggatttat
     3661 gtgcgtgatt ttcttacact aaagccttat atcagtgctc tagcacatat tacagggggt
     3721 ggtttagtag aaaatttacc acgcgtttta cctcgtggta tgggtgcaac tatacgcaaa
     3781 catcatctta aaactcctga aattttttat actataggac aggctgtaga agaaagcgaa
     3841 atgtatagaa gctttaacat gggagtgggt ttagtaatgg ttgtagatcc ttctaatgta
     3901 agtaaggttt tagaaaattc agatgccttt attattggcg aaatttgcat taatgaaggt
     3961 attgttttag agtgaaaaca aattattatg attatttatg tgctaaaatg tatgtaattt
     4021 tgcccataaa agcccataaa gacaaactaa aattttatct ttcttatgta aataagaaag
     4081 ataaaatttt tagagttaat gtgtggaagt gggcggtttt gataaaaatt gccaaagatg
     4141 ataaaacgaa atatttttgt tcgaatgtat taaataaagg gtaaaatgca caatttaaat
     4201 gaagctttgt ttcaaaaaaa gataaaagaa attcgcttaa aagcaatagc gagtattatt
     4261 tgtgggtttt taggtatcat tccttatctt ggagttttat ttgttcttgc gagttggatt
     4321 ttatttttta ttgtgcttta tgatttaaaa atctatggtg gtgctaaaaa tttgtttaag
     4381 aatttcctta ttagtgtagg gattggattt tttggtattc ttgttaatac aagtatttta
     4441 tttgcaatgc taaagcctag aactggcatt tttggtgggc tttattttaa tcaagataat
     4501 atttttatgg ctattgctat atttttagta ttacattttg ctattttggc tttaattttt
     4561 ccttttttga aagcttttta ctatgaaatt gctagaacaa caaagcaaaa gtatttcact
     4621 tatgctttta atacctttta tttagggctt cttactttga ttatcggcat aggcttggtg
     4681 tttttgctag caagtttggt tttttggatt ttagcgtggg tcaaatttaa agaatttgat
     4741 gagcaagaac tttcaaattt agaagaaaga ttggcaaaag cacaaaaaaa ggtttttgat
     4801 tttgatttaa aatggattaa aatcacaatg gcttcattta taattttaaa cttgctcgtt
     4861 ttaacatttt cgtttatatt agaagttatt agctttgaag attttaggtt ttactacaca
     4921 aaaaaacttt attttataca gccataatcc tagctttgct tagtgtgttt ttgttttgta
     4981 aaaagataaa aaattacaaa ctttttattt attttttcat atggcaaggt ttaagtgttt
     5041 ttggtagtca tcttcttttt attcctgatt ttatggtaga tcaaccacca gaaattatat
     5101 atggaagttt aaacataata ttaagtctat gctatattat ttttgctttt ttatttttta
     5161 aaattttgat tcaaattaca aaggaaaaac ttttttatct tatttttgca ttttatgttt
     5221 gcataaaaat tttgataata ttaattttct ttatttttat gatggttgat aactattata
     5281 tatttacaaa aagtcctata aagatgctca tagataatta taaattactt tttcaagttg
     5341 tttatttcgt ttcattttta attgtttggc ttatgcttaa aggacaaaaa aatgtaaaaa
     5401 tatgttagaa tgatgaaaaa atactatttt acgtagatgt ttattaggat atattcgtat
     5461 gtcttaaagc tctttatggg gtgttaagta attataatat ttaaaaatta aaaaatatat
     5521 agtttatcca cattttatag tttaacttct aaaaatttga tcatctcttt tttcattttt
     5581 tagagctaga aaacatatga gtgaaattgc tttaaagtta gttagagcag ttgatactaa
     5641 atattttgat aagaaattta aatagattga ttttacttaa attaaagact ttttgcctcg
     5701 tgatacaaaa ttaagtgatg aatttttagt taaattgata ttaaatatga aaaaattata
     5761 aatattaata ctttttcaaa ttaatagtaa atatagaggg tttgattttt tcacaaaaga
     5821 tttggataga acttgcaaaa aactttcttc aatatttata cttttaaatt ttgatgcaaa
     5881 tcctattcaa tatagcattg gcaaaataaa ctaaaaagct taaaatagct atactcaaaa
     5941 gaattccaaa ccatgcaaaa tttcctgttc caagatttga aaccgcgtta gtaaggatat
     6001 taactccacc aagtgcttta atgcctttag cacatactcc agcggcgatg attatgctta
     6061 cgactaagat aaaaatttca gccatagtct tttaaaatca ccatcatatc ttcgcctaat
     6121 tttctagcat ttctgtgtct tgcaaattca acaagaaaaa ctaaagaaat tcttacaaaa
     6181 tttgctatca caacatcgag cttgatagta aaaaaatacg ctataaataa aaatataaca
     6241 ggtaaccaag gaaagagtgt gtaaaaagta gggcatttag gatcaatgat ttgcggaatt
     6301 tcaacttcat catttaaaac acctttttct ttatctcttt tatcaatcca agcaaaataa
     6361 aaaggaatca agatggcaat aattacaaca taggtaatca cactataaat ttggtaattt
     6421 aaaaaaagcc ctacgacatt atcactttgt cctaccatat ctgccatatt gattgaattt
     6481 ccatcttttg gatcataatc aagtgcaatt aaagaaagca cacatacagt tgtaatagga
     6541 cggattttaa gtgagattaa aacaggatac atacatgcta acaaaagcaa aagcaattca
     6601 gcatagctag aaatgacgat ttttaaagcc attccaacaa caaaagttcc acttaaaatt
     6661 aagtatttat tttttgattt ttcctgaggg tttatttgct aaaaaagcaa gttttgccga
     6721 agcattgata tgtttcatgt aagcagtaaa gcctgccaca ctcatgataa taagccctgc
     6781 tccagaaagc tgacttttaa aagtcgctgt gataaaagat aactatcaag taaaacattt
     6841 aaaagcttgt atactctttg tttggagttt ttggtatagg tgttcctgtg atataaaaag
     6901 caaaaataag caagataata tttgaaagaa aaatacaaaa atgggatcgt atttttttga
     6961 gtatatcata aaaattagca
//
LOCUS       DARGEY010000071         6946 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.071, whole genome shotgun sequence.
ACCESSION   DARGEY010000071 DARGEY010000000
VERSION     DARGEY010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6946
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.071"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..225)
                     /locus_tag="SF008_001255"
     CDS             complement(<1..225)
                     /locus_tag="SF008_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEG8233518.1"
                     /translation="MQFLYNKQAGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNF
                     LYNYTITNLTRNSCTLKFLNKKSQNIKQSEL"
     gene            complement(227..634)
                     /locus_tag="SF008_001256"
     CDS             complement(227..634)
                     /locus_tag="SF008_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233519.1"
                     /translation="MDQSYEFFLALHLYSLYASGFLMLFYLILTQGNFKTEFIFIRRI
                     RLFLPIYYLFLALIIFTGCLLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKAR
                     RFRKYATFRWISCLILPFEIFLLFLPFLIERYL"
     gene            complement(634..1059)
                     /locus_tag="SF008_001257"
     CDS             complement(634..1059)
                     /locus_tag="SF008_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEG8233520.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNISKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSSDDEHEVNPSIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLSNKIFIQKIKTIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(1059..1640)
                     /locus_tag="SF008_001258"
     CDS             complement(1059..1640)
                     /locus_tag="SF008_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HEG8233521.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMVNGEQGVTLQSIIVHETRTGYAQGFREDAYSELMPKISLQ
                     DIEFSNGIKAEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(1637..2380)
                     /locus_tag="SF008_001259"
     CDS             complement(1637..2380)
                     /locus_tag="SF008_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HEG8233522.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKQDLNPIVVITGGEPLIHYENP
                     EFIEFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
                     KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNA
                     QKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
     gene            complement(2383..3345)
                     /gene="moaA"
                     /locus_tag="SF008_001260"
     CDS             complement(2383..3345)
                     /gene="moaA"
                     /locus_tag="SF008_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEG8233523.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMINDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDILDSVLSGIDEVLNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            complement(3358..3873)
                     /locus_tag="SF008_001261"
     CDS             complement(3358..3873)
                     /locus_tag="SF008_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233524.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDSEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            complement(3870..4367)
                     /locus_tag="SF008_001262"
     CDS             complement(3870..4367)
                     /locus_tag="SF008_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233525.1"
                     /translation="MELALFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENSLDKNKELIPLKQKGVIESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            complement(4358..5242)
                     /locus_tag="SF008_001263"
     CDS             complement(4358..5242)
                     /locus_tag="SF008_001263"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate polyprenyltransferase"
                     /protein_id="HEG8233526.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLANDTAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLLVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKIGLHSIPAKFGSKATLFISAF
                     CHILAVLFWLLFVWEVWGVALGKIALIGVIISGIILALEHKIVHKNFAHIDRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
     gene            5313..6182
                     /gene="miaA"
                     /locus_tag="SF008_001264"
     CDS             5313..6182
                     /gene="miaA"
                     /locus_tag="SF008_001264"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEG8233527.1"
                     /translation="MFFEIALIGTTASGKTYIANTLAREFNAVVLSLDSLCVYKEINI
                     ASAKPSQDDLASIKYFGVNLLSVNEHFNVELFIREYQKAKEFALARNLPLIIVGGTGF
                     YLKTMIDGLSEKTLESKSSLNNDEIYALLLNIDPNYKIEKNDTYRLKKWLGIYEQTRE
                     IPSEFLKRTQKTGVLKDIEIYELAWDKEILKKRIQTRTKEMLDNGLLDEAKILFSKFD
                     YKLKALNSIGLKECKEYLDGEISFKELENLITIHTTQLAKRQRTFNKKFQSKALEFDK
                     ALATLRMKFSIEK"
     gene            complement(6168..6731)
                     /locus_tag="SF008_001265"
     CDS             complement(6168..6731)
                     /locus_tag="SF008_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HEG8233528.1"
                     /translation="MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFG
                     GFQALMPTIGYFIGITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFG
                     FKTMLALAIATSIDALAVGVSFAFLNINLLLAIFLIGIITFILCIIALKIGNKFGIYL
                     KNKAELLGGLVLIILGVKILIEHLFFD"
BASE COUNT         2496 a         1040 c          867 g         2543 t
ORIGIN      
        1 taattcactt tgttttatat tttgtgattt tttgtttaaa aattttaaag tgcaagaatt
       61 tcttgttaaa tttgtgattg tatagttgta aagaaaatta tcttgtaaat ttctaagatt
      121 tagctccgaa ttttccttta ctcttcttac ttttaaatgg ttaaagtttt caccttgaag
      181 ttgtataaac tcttctccag cttgcttgtt atacaaaaat tgcattttat agatatcttt
      241 ctattaaaaa aggcaaaaac aataaaaaaa tttcaaaagg taaaatcaaa caactaatcc
      301 atctaaaagt ggcatatttt ctaaatcttc ttgctttttt aaaacaaaca aagtgaaaaa
      361 ttgctaaggc aaaaattaag atccaagaaa aaatcattac ccagatattg acattcattt
      421 gaaattgttt cattgctgat aacaaacaac ctgtaaaaat aatcaaagct aaaaataaat
      481 aataaattgg taaaaataat cgtattctgc gaataaaaat gaattcggtt ttaaaatttc
      541 cttgtgttag tataagataa aaaagcatta aaaaaccgct cgcataaaga ctataaagat
      601 gtaaagctaa aaagaattcg taactttgat ccattatttt cctttgttta taaaatcagc
      661 taaattttga atttgttcat cacttaaaaa actatggttt ttatctttta tcgtttttat
      721 tttttgtata aaaattttat tgctcaaggt tttaatggcc gtgctgtttt taggttttaa
      781 ttcccctttt tctccatgac aagtggcgca tttttgttta tataaagagt tgataatact
      841 aggattgact tcatgttcat catctgaact ttgtgcttca tcatctacag gtaaaggcag
      901 gttggagtca cttaattctg ttttttcatc gttttgttct atttggacta cttcttgatc
      961 tgtattttga gtcttggaaa tatttttttc atcattagaa caggcagata aaactaataa
     1021 aaaaaaactt aaggcaatta aaattttagc tttttgcatt aaatctcctt tggatttata
     1081 aaaatttctt cattttttaa tttgttataa aaatctatat cattccattc tgctttaatg
     1141 ccattggaaa attctatgtc ttgaagtgaa atttttggca ttagctcact ataggcatct
     1201 tctctaaaac cttgtgcata gcctgttctt gtttcatgaa caatgatgct ttgtaaagtc
     1261 actccttgtt ctccatttac cattttcgtt tgttttaata aagcatctat aagtatgaaa
     1321 aatacacgac aaaaattttc agcacttaca ttaacaggca ggcaaatcca acgacttgaa
     1381 tattttttca tttcttctaa atattttgcg tcatcatatt taaaaagagt gatagcatga
     1441 tcaaaactat caataatttg gcgtatatag gtttttaaaa gtccaaaatc atagaccatt
     1501 ccagcattat ctaaatattt gctttcaagt aaaacttcaa ctttgtaaga atgtccatga
     1561 atgctacttt tgcaacgctt agaagaacaa aatctaacaa tgtgtgcgtt ttcaaattca
     1621 aataattttc ttataatcat acaccctctt tatcgttcca aagacgaata tgaattctat
     1681 cagaataatt ataaccattc ttaatacaaa attcagcaat tttttgagca ttttttttaa
     1741 ggttttgctc attttcaccc ataggcatac aaaaaatttg atttggagct tcttttagaa
     1801 tttcattgat ttctaaaaat gaattatcaa gagtattggc atctaaaaca aatttataaa
     1861 aactatcttt tgcgtaattt ttaaatgctt ttaaagcttt aaaatttaat cgtttatctt
     1921 tttttatccc actattttgg agtttaacgc ttaaagcaaa aatacattct ttgtaaaaag
     1981 gatatctatc aaaatcaatt tctatgcttc cattgctttc aaagtgtatt tcgaatttat
     2041 tttttaataa catttggata aattctataa attcaggatt ttcataatgg attaatggtt
     2101 ctccacctgt gataacaact ataggattaa ggtcttgttt taattttatc actcttttta
     2161 aaagttcatt agcatttaaa gtttcataac tttctttaaa atcttttgtg aaaacagctc
     2221 ttatcgtgtc acatccaatg agagttttat cgttttttga tatttttaca ttaaaaccta
     2281 aacagttgaa attacaacca gcaaaacgca taaaaatagc taattttcca ttatatttac
     2341 cttctccttg aatgcttaag aaactttcaa caagttgcaa aattaacctc cagtttgata
     2401 aaaagcacga gatgaggttt cattatcaac aacactccat ttattttttt ctggtttatt
     2461 tcttaatact tcttgtaata tttctacagc ggctttaata tcaccttttc gaaccgcttc
     2521 ttttatgctt aatgcttcat caaaataaag acaaggtatt aacaagcctt cagcacttaa
     2581 gcgtatgcga ttgcaagaat cgcaaaattc atggctatga ggatctataa ttccaaattc
     2641 ataatcatct gccttgtaaa tactcacagg tgctttttca tcttttttta taagttgaat
     2701 ttgatatttt tgactcaaaa tttgtataat ttcatctctt tttaatcctt gtaatttacc
     2761 ataagcatga gtattttcca taaattctat aaagcgaatt tgagcttttt ttgattttgc
     2821 aaattccaaa agagatatca gttcatcatc gtttaaattt ttaagagcta cagtattaag
     2881 ttttactttc aaatctagat ttaaaacttc atcaattcca gataaaacac tatctaatat
     2941 atctttttgc gcaagagttt ttgctttttt gtgatctagg gtatcaagtg aaatattaag
     3001 tcgtttaagt ccagcatttt ttaggtcttt agcaaagtct tttagtaaaa atccatttgt
     3061 agttatagca aggtcaatat cgcttttata atcgttaatc atttttataa aaatacttaa
     3121 atcttttctt aataaaggtt ccccacctgt tatacggatt ttttcaattc cttcgtctat
     3181 agctgcttta acaaataaaa aaagttcttc gaagcttaat aaattttctt ttggctgata
     3241 atcgaaagga atttttggca tacaataaag gcagcgaaag ttacatcttt gtgtaactga
     3301 aattctaaga taatttatct ttctaccgaa ttgatctata agcatttatt ttccattcta
     3361 ttttattaat ttcttaaatt ttaagacaag ttctacattt ccagtgccaa tgcgtaaatc
     3421 tttagcgatt tgttctatgc tttttccttc tttgaaaaga ttttctattt tttgttcttc
     3481 tgtatcgtaa tttggtgtaa gtttagccat gctttgtgct ttttgttcca aatttaaaag
     3541 acgattttgt tgttcatttt gaaaatcttc tatgatatgt tccatagttt ttagtgttct
     3601 taaaacagga gtgatttttg aactgatttg tttatcaagt tcaatcataa tttcttcttt
     3661 taaaagagag gttttatagt cttcatcctc ttcgctatca tctttaactc ctaattcttt
     3721 acgaaaataa tgaagttctt tggtaatatc ttctatcaca ttttgaagtt ttgctatttt
     3781 tgcattattt tctctttctt tgatattcat gtaggctagc attgcaatta aaagcacaat
     3841 tataaaaact aaataaagta catcatcact cattcttggc ctttcttatt tcttatcata
     3901 tttctttgga tttcaacaac aaaagcatca aaagccattt tgtcttcagg cttaattttg
     3961 ataatttttg ccaatgtttg actttgagct ttgataaaaa tagctatttt ttgattattt
     4021 aaatcaaatc ttaaataata ttctttatct tcttctaaaa tagtatccaa aaaatttaga
     4081 tactcaaaat ttaaagattc tattacccct ttttgcttaa gtggtataag ttctttattt
     4141 ttatctaaag aattttcaag ccttaaaata tcttctttta gacttaaaag aagatcaaaa
     4201 ataatttttt caccctcgtc aaaatcaatg cgtaaagcaa gttttttcca ttttaaaatt
     4261 tgagaaattg ctccaagttt taggtattct ccaagaaaac ggttattttc tatttcacaa
     4321 cattctaaat gagcttcaaa tcctgcttta aaaagtgcta attccataat aaatcaatcc
     4381 aaataaaaat aaaaaagata atacttaaat aaccatttag agtaaaaaat gctctatcaa
     4441 tatgagcaaa attcttgtga acaattttat gttccaaggc taaaataata ccgcttataa
     4501 ttaccccaat aagtgctatt tttccaagtg ctacacccca aacttcccac acaaaaagaa
     4561 gccaaaataa taccgctaaa atatggcaaa aagctgatat aaataaagta gcctttgaac
     4621 caaatttagc aggaatagag tgaagtccta tttttttatc atactccata tcttgtaaag
     4681 aataaagcag atcaaaccca gctgtccaaa aagttacacc taaacataaa ataacgctat
     4741 aaatgtgaat ttcacccata attataacac ttcctgcaat aggcgcaagt cctaaacaaa
     4801 atcctaaaac taaatgtgct aaagaactaa agcgcttaaa agctgaataa atagccaata
     4861 ccaaaagcac aggaaaagac aaataaaagg ccaaagtatt aataaaataa gaacatgata
     4921 taaaaataag tgcattaata atgataaaaa tccatacgct ttttctacct atttttccac
     4981 tgacattagg gcgatttgca caacgaggat tatccttatc tatatcttca tccattaaac
     5041 gatttgtagc catggcaaaa tttcttgcac ttaccgcaca aataatgcct aaaatcaacg
     5101 ccttaaaacc aaaccaagca gtgtcatttg caagttttga tgctacaatc atagaggaaa
     5161 ataaaaaagg caaagcaaaa atagaatgct taaatactac aagttctaaa atatctttaa
     5221 attttatcca gaatgtgttc atttttctac tttaaaatat tttttgctat gattttacta
     5281 aaatttttat aaattttagg ataaatatta aaatgttttt tgaaatagca ttaataggaa
     5341 caaccgcgag tggaaaaaca tacatagcca atactttagc aagagaattt aatgctgttg
     5401 ttttaagtct tgatagtctt tgtgtttata aagagattaa tatagcaagt gccaagcctt
     5461 cacaagatga tcttgcgagt ataaaatact ttggggtaaa tttattgagc gtgaatgaac
     5521 attttaatgt tgagttattc ataagagaat atcaaaaagc aaaagaattt gctttagcta
     5581 gaaatttacc tctaattata gtaggtggaa ctggatttta tttaaaaact atgatagatg
     5641 gtttaagtga aaaaacctta gagtcaaaga gttctttaaa taacgatgaa atttatgctc
     5701 ttttattaaa tattgatcca aactataaaa tagaaaaaaa tgatacttat agattaaaaa
     5761 aatggctggg tatttatgaa caaacaagag aaattcctag tgaattttta aaaagaacac
     5821 aaaaaactgg ggtgcttaaa gatatagaaa tttatgagct tgcgtgggat aaagaaattt
     5881 taaaaaaacg tattcaaact agaacaaaag aaatgcttga taatggactt ttagatgaag
     5941 caaaaattct tttttctaaa tttgattata aacttaaagc attaaattct ataggtttga
     6001 aagagtgtaa agaatattta gatggagaaa tttcctttaa agagcttgaa aatttaatca
     6061 cgatacatac tacacaactt gccaaaagac aaagaacttt taataaaaaa tttcaaagta
     6121 aagccttgga atttgataaa gctttagcta ctttaagaat gaaattttca atcgaaaaat
     6181 aaatgttcta ttagaatttt tactcctagt ataattaaaa ccaatccgcc taaaagttca
     6241 gctttatttt taagataaat tccaaattta ttccctattt ttagagcaat gatacataaa
     6301 atgaaggtga taatacctat taaaaatata gctaataata gatttatatt taaaaatgca
     6361 aaactcacac caactgctag tgcatcgata ctcgtagcaa ttgctaaagc tagcatggtt
     6421 ttaaagccaa attgattggc attactatcg caattttcat tttccaatga ctctttgatc
     6481 atttttaatc ctattaaaga aagtaaaata aaagctatcc aatgatcaat actcgcaata
     6541 aaagatgcaa aagttatgcc tataaaataa ccaatagttg gcatcaaagc ttgaaatccg
     6601 ccaaaataaa ttccaacaat aagataatgt tttaaatgta gttttttaac actaaaacct
     6661 ttgcatagtg atacagcaaa agcatccatt cctaaagcac aggataaaaa aataagacta
     6721 taaaaatcca taataaatcc taaaatttta taaaaaattg aagatgaaat tataattaaa
     6781 caaagataaa aatcacataa ttttgatata tttaattaaa ttttaagaaa taaatatata
     6841 taattcaatt tcatttttat tttttactcc ttaaaagtgg cccattcgtc tagcggttag
     6901 gacatcgccc tttcacggcg gtaacacgag ttcgagtctc gtatgg
//
LOCUS       DARGEY010000072         6855 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.072, whole genome shotgun sequence.
ACCESSION   DARGEY010000072 DARGEY010000000
VERSION     DARGEY010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6855)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6855)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6855
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.072"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..759
                     /locus_tag="SF008_001266"
     CDS             <1..759
                     /locus_tag="SF008_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HEG8233529.1"
                     /translation="LEKEFLKQKLKFKKINAYCYLFDAKDKAILSSMKAFNEAHFYIQ
                     NYSSYLCALNLEVKAGQRVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQK
                     NLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCSTFAKIGFDLEKSYKEIKNIAK
                     TQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELLDIDLENVEAK
                     AGQSEEFAEISKCRRILPSLDYDGFFIAKLRKLC"
     gene            complement(935..1432)
                     /gene="msrA"
                     /locus_tag="SF008_001267"
     CDS             complement(935..1432)
                     /gene="msrA"
                     /locus_tag="SF008_001267"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEG8233530.1"
                     /translation="MKNIVLGGGCFWCVEAVFERLKGVIDTEVGYSGGNPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILTLFFKIHDPTSIDKQGGDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPNQGYCQAIIAPKLQ
                     KIQSD"
     gene            complement(1473..1991)
                     /gene="ppa"
                     /locus_tag="SF008_001268"
     CDS             complement(1473..1991)
                     /gene="ppa"
                     /locus_tag="SF008_001268"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEG8233531.1"
                     /translation="MNLNKIKIGDIPNKINAVIEIPYGSNIKYEIDKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            complement(2001..2579)
                     /locus_tag="SF008_001269"
     CDS             complement(2001..2579)
                     /locus_tag="SF008_001269"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEG8233532.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVINTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFYNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERAIEPIVADMKELIKKIQSI"
     gene            complement(2576..4327)
                     /gene="aspS"
                     /locus_tag="SF008_001270"
     CDS             complement(2576..4327)
                     /gene="aspS"
                     /locus_tag="SF008_001270"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEG8233533.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLITEGTIRPRGEGLVNPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVIKVAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFDLKFIDVIDIFTKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKKDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELKLIDPNALEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANNIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            4418..5278
                     /locus_tag="SF008_001271"
     CDS             4418..5278
                     /locus_tag="SF008_001271"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HEG8233534.1"
                     /translation="MQNKIDYKNIKKIGLVTRPNVSLDKEILKLQSILSIYKVELVLL
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSIFLEDRQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCMLCIDGQENYKMNDFKSIKVGLSDKNVALIHPKNRDYFQ
                     ILKEKLHWGN"
     gene            5278..6801
                     /locus_tag="SF008_001272"
     CDS             5278..6801
                     /locus_tag="SF008_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8233535.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIEVDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNFVSFLEDFKKDFNAYSQISNE
                     LNAILEEEKKVEELKELARAQIEKISSINPKIGEYEELLILKKKLSKKDKLEEAWSKA
                     ERIFELEKVVIEALNLSEVDASFFSECLNELRVICENQKMEDLDFDVEALLDRIENLS
                     YLIKRYESIENALEVLKQKKYELEHYENLSFEKKELEKKFQELKQKLEEKAQILTQTR
                     KKNLKKLEKCLNNYLKDLYMKDASLTLKENEKISILGKDEIMLDINLANLKNLSSGEL
                     NRLRLAFIATECNILNAGKGILFLDEIDANLSGKEAMSIAKVLEELSKFYQIFAISHL
                     PQLSSKAHNHFLVEKNGEESKVKKLDQEERIKELARMVSGELVSDEAIEFAKTLFKN"
BASE COUNT         2341 a          980 c         1115 g         2419 t
ORIGIN      
        1 ttagaaaaag aatttttaaa acaaaaatta aaatttaaaa agatcaatgc ttattgttat
       61 ttgtttgatg ccaaagataa ggctatctta agttctatga aagcttttaa tgaggcgcac
      121 ttttatatac aaaattattc ttcttatttg tgtgctttaa atttagaagt caaagcaggg
      181 caaagggttc ttgatatgtg tgcagctccg ggtggtaaaa gtatcaatct tgcaaatttt
      241 atgcaaaata caggttattt agcttgcaat gagatgagta gggatagatt ttttattttg
      301 caaaaaaatc ttaaaaatta cggcgtgaat gctaaagttt ttatgaaaga tggtaaaaat
      361 ataggcaatt tatgtccttt aaaatttgat aaaatcttac ttgatgcacc ttgttcgact
      421 tttgctaaaa taggttttga tttggaaaaa agttataaag aaatcaaaaa tattgcaaaa
      481 actcaaaaaa aacttctaca ttctgcttta aaggcattaa aaataggtgg agagcttgta
      541 tatagtactt gcacctttac caaagaagaa aatgaagaag tgatagagaa tgctttaaaa
      601 agtgagttta aattagagct tttagatatt gatttggaaa atgttgaggc taaagcaggg
      661 caaagtgaag aatttgctga aatttcaaaa tgcagacgga ttttaccaag cttagactat
      721 gatggatttt tcatagctaa acttaggaaa ttatgttaat taataaaatt attcacattt
      781 aaatacaaat tcataaaaaa acttaaaaaa caataaataa ttttttcttt attttaaagc
      841 ttaaagttct atttttaagt actttgaaaa gaaaatcaca gcgtgaaaag gctgtgaata
      901 aagttgaatt ttttttaacc ttaaaaagat gaaattagtc tgattgtatt ttttgcagtt
      961 ttggagctat tatagcttga caatatcctt gattgggatt atttataaaa taatgttgat
     1021 gatagttttc agctttgtaa taagtttgca atcttgaaat tttagtaact atttttttgc
     1081 taaatatttt ttgctgttct tcgatgaaat tttgagctaa aattttatct tcttcatttt
     1141 cgtaaaagat tattgagcga tattgtatac caatatctcc accttgttta tctatacttg
     1201 ttggatcatg aattttaaaa aagagtgtta agatttcaag aagagagatt tgtttttcat
     1261 cgtaatttat tttgacaact tctatgttgc catcaccatt acacacgctt tcatagctag
     1321 gatttggatt tcctccgcta tatccaactt cagtatcgat tacacctttt aggcgttcaa
     1381 atacggcttc aacacaccaa aaacaaccac cacctaaaac gatatttttc attgcgagtt
     1441 ttccttgagt ttagcccttt gaagggctag gattatttgt agtttttgat tgctttttct
     1501 aaaatttcaa ttgcagcttt ttcatctttg aaatcttgca ctttaaccca tttatttggt
     1561 tctaaaattt tataagtttc aaagaaattt ttgattttat ttaaagttgc ttgtggtaaa
     1621 tctgtgtaag tttttatatt gtcatatctt gcatctattt ttgaatttgg aaccgcaaga
     1681 agtttttcat ccattccgct ttcatcttcc atgattaaaa caccgattaa gcggcaagga
     1741 atcacggctc cagcttggat aggatattca ttaagcacta aaatatccac aggatcacca
     1801 tcatcagcca aagtattggc aataaaacca tagtttgctg ggtaaaacat cgcactagcc
     1861 ataacgcgat ctaccatgat agcaccacta tctttatcga tttcgtattt gatatttgag
     1921 ccgtatggaa tttcgattac ggcattgatt ttatttggaa tatctccgat tttgattttg
     1981 tttaaattca ttttttctcc ttatatactt tgaatttttt taatcagttc tttcatgtct
     2041 gcaacgatag gttcgatagc gcgctctcca tcgataataa aatgaagttt tttcttttga
     2101 taaaaatcta aaatttcatt taaaggttct gtataaactt tcattctatt gtaaaacact
     2161 tcttcattat catctgcgcc acgatttctg cctaaaactc tttctttggc aacttcttcg
     2221 cttactctta cttctatgac gcctttaaga caaatttcat tttgctcact taaaacctta
     2281 tcaaattcca tcatttgctc tacgcttctt ggatagccat caatgatgat agttttagtt
     2341 ggagcagctt ttagagcaca aactatagta tttataacaa catctaaagg aacaagattg
     2401 cctttggaga taaaactatc tatagttttt ccaagctcac tcccacttgc tacttcagct
     2461 cttaaaagat ctcctgttga atagtgtgta atatttgtcg catctgcttg tgcgattaaa
     2521 ctagcatcgg tagtttttcc actacctggt gcacctatga ttaaaaacaa ttctttcatt
     2581 ttatattctc ccttaatttg attcctaatt ctctcattgc ttcattgcta gcaggcgatg
     2641 gtgcatctgt cattaagcat tgcgctcttt gggtttttgg aaaggctata acctctctta
     2701 tgttgtttgc tcctgtaact agcatgatga gtctatcaag tcctatagcg atacctccat
     2761 gtggtggagc accaaaactt aaagcatcaa gcaagaagcc aaatttttct ttttgttgtt
     2821 cttcatcgat atttaaaagt ttaaatactt tttgttgaat atcattttta tggattctta
     2881 tactacctcc acctagctca acgccattta acactacatc ataagcaata gatgaaattt
     2941 cttctaaatc agtctcatca atattttttg gcatggtaaa aggatggtgc atcgcagaat
     3001 aacttccgtc atcattttgc tcaaacatag gaaaatcaac aacccataag aattccaagg
     3061 catttggatc tataagtttt aactcgttgg ctaagaaaat tctaaatctt cccatataat
     3121 caagcacggt ttttttagct cctgcaccga aaaataccac atctcctact tcaagctcac
     3181 agcgtttgct tagctcattt aaatcttctt cgctaaagaa tttacaaagt ggacctttaa
     3241 gcccatcttt tttaacttgt atgaaagcta agccttgggc gccaaattta cgcacaaatt
     3301 cttcaaatct ttgcatttgt ctttttgaaa aaatagtatc gccttttgga acgcgtatgg
     3361 ctttgatgcg atttttcttt gtatctttgg caatatttgc aaaaatttca ttatttgact
     3421 tagtgaaaat atcaatcaca tcaataaatt taagatcaaa tcttaaatcc ggcttatcag
     3481 agccataatt ttccatagcg tctttgtatt gcatttgtct aaaaggggtt tgaatttctt
     3541 tgccgcaagc tttgaaaata tcttttaaaa aagtttcagc taccttgatc acatcttttt
     3601 gttcgcaaaa gctcatttca acatcaattt gtgtgaattc aggttggcga tcagctctta
     3661 aatcttcatc tctaaaacat tttgcaattt gaaaataacg atcaaaaccg ctacacatta
     3721 aaagttgttt gaaaagctga gggctttgtg gaagagcata aaattcaccc tgatgcacac
     3781 gagaaggcac gagataatct cttgcgcctt cgggagtagc tttggtaaga ataggggttt
     3841 caacttctaa aaatcccata tttgccaaag aatttctagc tgctatacaa gctttagaac
     3901 gcaaggcaaa attttcataa agtttaggat ttcttaaatc taaaaagcga tattttaagc
     3961 gtaattcttc atttacactt tcatcagcga tagcaaaagg aggtacggca ctttcatttt
     4021 ctatggtaag tttagaaaca actacttcga tttctcctgt ttttaactta ggatttacaa
     4081 gtccttcgcc acgcggacga atagtacctt ctgtaataag tacaaattca tttcttgcat
     4141 tggaagcgat ttcatgagct tctttactat catttggatc gcaaacaagt tggataatac
     4201 cgcttctatc tcttaaatct ataaaaataa ctccaccatg atcgcggtag ctatttaccc
     4261 aaccgcaaag tttaacgctt tgaccaacat gggaaattcc caagtctgta ttataatgac
     4321 ttcgcaaatt tattccttga aaaagatttt ttaagataat gagcaaaatt atagtatttt
     4381 tattcttttg ctttgctaag atttgatata attttttatg caaaataaaa tagattataa
     4441 aaatattaaa aaaattggac ttgttacgcg acccaatgtg agtttagata aggaaatttt
     4501 aaaacttcaa tcgattttat ctatatataa agttgaactt gtattgctta aagaaagttc
     4561 tgaaatttta gatttgccaa agtatggatt ggatgatttg tttaaaatat ccgattttgt
     4621 tatttcttta ggtggagatg gaactttgat ttctttatgc cgtaaagctt gtgaatatga
     4681 taaagcagtt ttaggaattc atgctggaca tttaggtttt ttaacagatt ttaaagttga
     4741 tgaagctgaa aatttttttc aagctttttt tcaaggagaa tttagaatag aaaagcctta
     4801 tttgttaagt atttttttag aagataggca aggaaaaatt ttagaaaaat tggcttttaa
     4861 tgatgtggtt atcagtaaaa acaatcaagc ttctatggct catatagaag tttttagaaa
     4921 agaaaagaaa tttaatgaat attttggaga tgggcttatt gttgcaactc ctgcgggttc
     4981 aacagcttat aatttaagtg caaatggacc catagtttat actttagctc aagcttttat
     5041 cttaactcct gtttgttctc attctttaac acaacgccct attgtcttgc caaaaggttt
     5101 tgaaatagag attatggcaa aggattgcat gctttgcatt gatgggcaag aaaattataa
     5161 aatgaatgat tttaaaagta taaaagtggg tttaagtgat aaaaatgtgg ctttaattca
     5221 cccaaaaaat agggattatt ttcaaatttt aaaagaaaaa ttacactggg gaaattgatg
     5281 ataaatagaa tttttatgaa agaaaatctt ggttttaaaa aggctgagct tgaaatttct
     5341 aaagggctta ccgtttttac aggcctaagt ggagctggaa aatcggtctt gtttaaagga
     5401 attttatccg cattttcttt gagtgaaagt gaggctaaaa ttgtcgaaat agaagtagat
     5461 gataagttgg atttagaaag ttttggtata gaaagtgaag aggagaatgt ttttaagctc
     5521 ttaaaagaaa aaaacacaaa atattttatt aacaatcaaa gcatagcgaa aaaaagtttg
     5581 caaaatttaa gtaaaacttt tattaagtat ttaagcgcaa aggaaaataa cgaatttgga
     5641 aatgaaaaat ttttaaatct cttagatgcc ttggagatgc aagaaaatac aaattttgtt
     5701 tcctttttag aagattttaa aaaagatttt aatgcttata gtcaaatttc taatgagctt
     5761 aatgcaattt tagaagaaga aaaaaaagta gaagaattaa aagaactagc tagagcacaa
     5821 attgaaaaaa tttcaagcat taatcctaaa ataggtgagt atgaagagct tttaatactt
     5881 aaaaaaaagc tttctaaaaa agataaatta gaagaagctt ggagtaaggc agagcgtatt
     5941 tttgagcttg aaaaagttgt tattgaagct ttaaatttaa gcgaagttga tgcgagtttt
     6001 tttagtgaat gtttaaatga attgcgtgtg atttgcgaaa atcaaaaaat ggaagatttg
     6061 gattttgatg tggaggcgct tttagatcgc attgaaaatt tatcctatct tatcaagcgt
     6121 tatgaaagca tagaaaatgc tttagaagtt ttaaaacaaa aaaaatatga gctagagcat
     6181 tatgaaaatt taagttttga aaaaaaagaa cttgaaaaaa aatttcaaga attaaaacaa
     6241 aaattagaag aaaaagcaca aattttaact caaacaagaa agaaaaacct taaaaaatta
     6301 gaaaaatgtt taaataatta tcttaaagat ctttatatga aagatgcaag tttgacgctt
     6361 aaagaaaatg aaaaaatttc aattttaggc aaagatgaga taatgctaga tattaattta
     6421 gctaatttaa aaaatttaag ttcgggtgaa ttaaatcgct taagacttgc ttttatagct
     6481 acagaatgta atattttaaa tgcaggcaaa gggatattat ttttagatga aattgatgca
     6541 aatttaagcg gaaaagaggc tatgagtata gctaaggttt tagaggaact ttctaagttt
     6601 tatcaaattt ttgctatttc tcatttgcct caactttcct ctaaggcaca taatcatttt
     6661 ttagttgaaa aaaatggtga agaaagtaag gtaaaaaagc ttgatcaaga agaaagaatt
     6721 aaagaacttg ctaggatggt aagtggagag cttgttagtg atgaagcgat cgaatttgct
     6781 aagaccttat ttaagaatta agcggatttt ttattttgct atgttaaaat atataactat
     6841 aaaaatttcc tttct
//
LOCUS       DARGEY010000073         6749 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.073, whole genome shotgun sequence.
ACCESSION   DARGEY010000073 DARGEY010000000
VERSION     DARGEY010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6749)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6749)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6749
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.073"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..866
                     /locus_tag="SF008_001273"
     CDS             <1..866
                     /locus_tag="SF008_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8233536.1"
                     /translation="VSNSFKLNEELALNHAKLRELSINLENTVKNHQQEFIQLGKKFE
                     KKMQIALEKNEKDIKIAYEEILKSSLEQMISDIAHQWRQPLNELGIAMFQMKQNLKDE
                     KGFAEIYSQSKDMIKNMSETIDVFRTLFNKGVEQCVFIKETLNKALEIAFETIEKNHV
                     NINIVSKSDYEVLAYENGLIRVFLNLILNSIEAFKNKKRKIITINFSKFGKNYLKITI
                     KDNAGGIDKENLDKIFQPYFTTKHPSQGIGVGLYISRQIIESFQGKIKVKNGKDGACF
                     EIFLKLKERVE"
     gene            869..1549
                     /locus_tag="SF008_001274"
     CDS             869..1549
                     /locus_tag="SF008_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8233537.1"
                     /translation="MSQECKELIILVVEDEVKARESMINILSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDYLIGEKIEANMLVKISEEYQFNKTKRTLIYSGGEIVLTKK
                     ELAFISLLLKQPGALVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            1675..3141
                     /gene="ccoN"
                     /locus_tag="SF008_001275"
     CDS             1675..3141
                     /gene="ccoN"
                     /locus_tag="SF008_001275"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HEG8233538.1"
                     /translation="MHPGNVLNYDYTVARYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKL
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            3154..3819
                     /gene="ccoO"
                     /locus_tag="SF008_001276"
     CDS             3154..3819
                     /gene="ccoO"
                     /locus_tag="SF008_001276"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HEG8233539.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDAENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            3824..4087
                     /locus_tag="SF008_001277"
     CDS             3824..4087
                     /locus_tag="SF008_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HEG8233540.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYLYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            4087..4950
                     /locus_tag="SF008_001278"
     CDS             4087..4950
                     /locus_tag="SF008_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8233541.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGESE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSAAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            4947..5168
                     /locus_tag="SF008_001279"
     CDS             4947..5168
                     /locus_tag="SF008_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HEG8233542.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLAILAVLTIWSLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            5165..5266
                     /locus_tag="SF008_001280"
     CDS             5165..5266
                     /locus_tag="SF008_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233543.1"
                     /translation="MSKALEYLIVIGLVVAAAITAWSVLTVNHLHIG"
     gene            5263..5865
                     /locus_tag="SF008_001281"
     CDS             5263..5865
                     /locus_tag="SF008_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233544.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     ALALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            5852..6373
                     /locus_tag="SF008_001282"
     CDS             5852..6373
                     /locus_tag="SF008_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG8233545.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQNVENNYNQIQKQQVNFDKFFKVNFQNDKITFIGKRKIPSYEVDQNSYVANFKISA
                     LQNINSNDLKVQVLLTRPFTKNFDQKLEGQVKNGILSIALPKLDKGRWELKLKFYANQ
                     ETVGFFSYELNAQ"
     gene            6370..>6749
                     /locus_tag="SF008_001283"
     CDS             6370..>6749
                     /locus_tag="SF008_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233546.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKDLEKKLGISVEFFAFLKNNEYLFSFFKELSLEKKSIED
                     LKNNDYYATYNEHLEILDEVYKNYL"
BASE COUNT         2336 a          778 c         1295 g         2340 t
ORIGIN      
        1 atgttagtaa ttcttttaag cttaatgaag agcttgctct aaatcacgct aaattaagag
       61 aattaagtat taatcttgaa aatacagtta aaaatcacca acaagaattt atacagttag
      121 gtaaaaaatt tgagaaaaaa atgcaaattg ccttggaaaa aaatgaaaaa gatattaaaa
      181 tagcatatga agagattttg aaatcttcat tagaacaaat gattagtgat atagcacatc
      241 aatggagaca accgttaaat gagctcggta ttgccatgtt tcaaatgaag caaaatctta
      301 aagatgaaaa aggatttgct gaaatttact cacaatcaaa agatatgatt aaaaatatgt
      361 cagaaacaat tgatgtgttt agaactttgt ttaacaaagg agtagagcag tgtgtattta
      421 taaaagagac tttaaataaa gccttggaaa ttgcttttga aactatagaa aaaaatcatg
      481 taaatattaa tattgtttcg aaaagtgatt atgaagtttt ggcatatgag aatggtttaa
      541 taagagtttt tcttaatttg attttaaatt caatagaagc atttaaaaac aaaaaaagga
      601 aaatcataac aataaatttt tcaaaatttg gaaaaaatta tctgaaaatt acaataaaag
      661 ataatgctgg tgggattgat aaagaaaatt tagataaaat ttttcaacct tattttacaa
      721 caaaacatcc tagtcaaggt ataggagtag gactttatat aagtagacaa attatcgaaa
      781 gtttccaagg aaaaataaaa gttaaaaatg gaaaagacgg ggcttgtttt gagatatttt
      841 taaaactaaa agagagggta gagtagaaat gtcacaagaa tgtaaagaat tgataatatt
      901 agtagttgaa gatgaggtta aggctagaga atcaatgatt aatatattaa gcgaacgctt
      961 tagtaaagta atcggagctc aaaatggaga tgaggggctt aaaaaattta aaaaatttaa
     1021 gccagattta gttatcacag atattgctat gcctattatg gatggactgg atatggcaag
     1081 agagattaaa gaaatttcag atgatgtccc aattgttgtt cttagtgcgt attcagagaa
     1141 agagagactt ttgcgttcta ttgatattgg tatagataaa tatttgatta aacctgttga
     1201 tatagaagag ttgtttaaag ttttagatta tctgataggt gaaaaaattg aagcaaatat
     1261 gcttgtaaaa atttctgaag aatatcaatt taacaaaact aaacgaactt taatttacag
     1321 tggtggagaa attgttttaa ctaaaaaaga attggctttt atttctttgc ttttaaagca
     1381 acctggagct ttggttttgc atgaagatat taagaaaaat gtttggatag gtgaacatgt
     1441 gagcgatact gctgttagaa cttttataaa aagagtaaga gataaagtgg gtgaagattt
     1501 tataaaaaat gtgccaagtt taggttataa gataaatatc aataaataag actgatttag
     1561 ccttaaaata taaaacataa caaatgatta acaaaattat catttttaag aaaaaatgta
     1621 taattaatat tctataatat tctcttgtta tcaaaaattt taaggagaaa gtcgatgcat
     1681 ccaggtaatg tattaaatta cgactatacg gttgcaagat attttatgtt tgcgaccata
     1741 ttgtttggca ttgttggtat ggctatagga actcttatag cttttcaaat ggcatatcct
     1801 aatttaaatt atttagcagg agaatatgcc actttttcaa gacttagacc acttcatact
     1861 tcaggtgtga tttttggttt tatgctttca gggatttggg caacttggta ttatataggt
     1921 cagcgtgttc ttaaagtgag tatggctgag tcaagatttt taatggctgt tggtaagctt
     1981 catttttggc tttatatgct tactatggtt ttagctgtta tatctttgtt tatgggtgtg
     2041 actacatcta aagaatatgc agagcttgag tggcctttag atattcttgt tgttcttgtt
     2101 tgggttttat ggggtgtaag tatttttgga cttattggaa ttcgccgtga aaaaaccctt
     2161 tatatttctc tatggtatta tatagctaca tttttaggta tagctatgct ttatcttttt
     2221 aacaacatgg aagtaccaac ttattttgtt actggaatgg gtaaatggtg gcatagtgta
     2281 tcaatgtatg caggaacaaa tgatgcttta gtacaatggt ggtatggaca taatgctgtg
     2341 gcatttgtat ttactgtggg tattattgct caaatttatt acttcttgcc aaaagaaagt
     2401 ggtcagccga ttttctctta taaactctct ttatttgcat tttggggctt aatgtttgtt
     2461 tatctttggg caggtggtca ccatttgatt tattcaactg tacctgattg gatgcaaact
     2521 atgggttcgg ttttctctgt agtattgatt ttaccttctt ggggttcagc gattaatatc
     2581 ttgcttacta tgaaaggtga gtggagtcag cttcgcgaga gtccgttgat taaatttatg
     2641 attttggcat caactttcta tatgttctca acacttgaag ggccaattct ttcaattaaa
     2701 tctgttaatg ctttagcaca ctttacagat tggattccag gacatgttca tgatggaaca
     2761 ttaggttggg taggatttat gactatggct gcgctttatc atatgactcc tagagttttc
     2821 aaaagagagc tttatagcaa atctttaatg gaagctcaat tttggatcca aaccacaggt
     2881 atagttcttt attttgcttc aatgtggatt gcgggtatta ctcaaggtat gatgtggaga
     2941 gcgacagatg agtatggtaa cttgctttat agctttattg atactgtggt ggctattgtt
     3001 ccttattatt ggattagagc gattggtgga ttgttgtatc ttatcggttt ctttatgttt
     3061 acttataata tttacaaaac aattgcttgt ggaagagtgc ttgataaaga accaaaaagc
     3121 gcttcgccta tggcagcata aaaaggagaa aatatgttta gttggttaga aaaaaatcca
     3181 ttcttttttg ctgtagctgt ttttgtagtg attgcttatg caggcatagt tgaagtttta
     3241 ccaaattttg cagaaaatgc aagaccaatt gaaggtaaaa aaccttatac ggttttacaa
     3301 cttgcagggc gtgcagtata tattaaagat agttgtaatg cttgtcattc acagcttatt
     3361 cgtccattta aatcagaaac agatcgttat ggtatgtatt ctgtaagtgg tgaatttgct
     3421 tatgatagac cttttctttg gggctcaaaa agaacaggac ctgatcttgc tcgtgtagga
     3481 aattatagaa cggctgattg gcatgaaaat catatgtggg atcctacttc tgttgttcca
     3541 gattctatta tgccttcata taagcatatg tttaaaaata atgcagatat tgaaactgct
     3601 tatgctgagg ctttaactgt gaaaaaagtt ttcaatgttc cttatgatgc agaaaatgga
     3661 acaaaacttg gttcttggga ggatgcacaa gctgaagtaa aagctgaagc tcaggctata
     3721 gttgatcaaa tgaaaaatca agaagtaaaa gatgcttttg ctaaaggtga aatcaaagaa
     3781 atagttgctt tgatcgctta tttaaatagc ttaaagtaag atgatggaac atttatcaat
     3841 agtttttgat gtgattaaaa atttaatcac atttgattta gcaacagttc aaaaacatga
     3901 gtgggagatt ttccaaggtt atggtttttt tgcactcgtg atgtttttgt caatagtatt
     3961 atatgcgtat ttgtatcatt tatatagaac agaaaaaaaa ggcgagagaa attatgaaaa
     4021 ttatgcaaac cttgccttaa aagatgatat tgatgatagt gtattagaaa gtaaaaggag
     4081 tgcttaatgc aatggttaaa tttagaagat aatgttaatc tcttatcttt aattggagct
     4141 attcttatca ttttaatcac actagttatt gtgggtagaa tgtttaagca aatgaaagaa
     4201 aagaaaggcg agtcagagct tagtgaacat agttgggatg gaataggaga gtataaaaat
     4261 gctgttccta ctggttgggc tgtggtattt ttcctgacta ttgtttgggc tatttggtat
     4321 tttctatggg gatatccttt aaattctttt tcaagtatag gtcaatataa tgaagaagta
     4381 gcaactcata atacaaaatt tgaagaaaaa tttaaaaatt tatctcctga agataaaata
     4441 gcaatgggtc aaaatatctt tttagttcag tgttcggctt gtcatggaat tacaggagat
     4501 ggtatcaatg gtaaagctca aaatttaaat atttggggta gtgaagaagg tataatcaat
     4561 gtaattaaac atggttcaaa aggtatgaat tttccaggtg gagaaatgct tggtgctgct
     4621 gatttaggtg tagcagaaga agatatccct gctattgctg cttatgtagc aaaagatctt
     4681 tcagctatta agaaaactgc aaatgaaaat ttagtagcaa aaggtaaaga agcttatgca
     4741 acttgtgcag catgccatgg agaagatgga aaaggtcaag atggaatgtt cccagatctt
     4801 acaaaatacg gttctgcagc ttttgtagta gatgttttac atagtggtaa ggctggtttt
     4861 ataggaacaa tgccgagttt tccaacactt aatgatattc aaaaagaagc tgttggcgag
     4921 tatgtaattt ctctttcaag gggtgaatga tggaaaataa taatagatgc gtgttttctc
     4981 tttcaggtgt tacaggtatg ttaattgcta cggttttgtt gcttgctatc ttagcagttt
     5041 taactatttg gagtcttaaa gctcagcaag aagtgatgca aaagccatat agtcttaaag
     5101 atgtacaaag tgtaaagatg tttggttcaa aagaacaaga tcatagaagt ataaaggaag
     5161 cacaatgagt aaggctttgg aatatttaat tgttattggt ttagttgttg ctgctgcaat
     5221 caccgcttgg tcggttttga ccgtaaatca tcttcatata ggatgaaaaa aatattacaa
     5281 gatggctttt ttttagctat cttcttcttt gttttattgc cttctagggt ttttgctctt
     5341 gatgctgtac tttttaatga aaatatttta agtcaaaaag taagtaacga gattaatctt
     5401 ataggaaaag agctttacca aaaaagtaat atttttatcg gcgttatggt tggtgataaa
     5461 actgaaattg aaactttatt aaataaacaa aaagaacttc ctcaatctta tatattgctt
     5521 cttttgtcaa aaaattctca caaagttgat atagtgggct caaaaggtgc tttagctttg
     5581 attgataaag aagctgtgct tagtccttat cctggaacag gatctatttt gccgatatta
     5641 gctacaaata aaggtgatat ttataatgct gctatactta atggttatgc agatattgta
     5701 gatcgtgtgg caaaatcctt gggattacaa ttagaacatt ctataggtaa tgcaaatcgt
     5761 gatactatca atattttaag aatacttatt tatggattta tttgctttgc attgttatac
     5821 tatgcacaaa gaagaataaa gaggaaaaaa aatgttagaa actaaaaaaa gtttttggcc
     5881 ttatggtatt ttgctttcac ttttggctat aattattgct tgtattgtaa cgatttttat
     5941 agcaagtcac catcctgtgt atgaggatga tttttatttt gactcttatc aaaatgttga
     6001 aaataattac aatcaaatac aaaaacaaca agtaaatttt gataaatttt ttaaagtaaa
     6061 ttttcaaaat gataaaatca cttttatagg taaaagaaaa attcctagtt atgaagtgga
     6121 tcaaaattcc tatgttgcaa attttaaaat ttctgcatta caaaatataa attctaatga
     6181 tttaaaagtt caagttcttc ttacaagacc attcactaaa aattttgatc aaaagttaga
     6241 aggacaagtt aaaaatggaa ttttaagtat cgctttacct aaattagata aaggtagatg
     6301 ggagcttaag ctaaagtttt atgcaaatca agaaacagtg ggttttttta gctacgaatt
     6361 aaatgctcaa tgaaattaag aatttttagc tcttcaaggc aaattagaga atattataat
     6421 caaaaaaaac agcaaaatgc tttattagat agtgctattc atataggtga atttttagat
     6481 aaagtttgtt tgagcaattt tcataaagca agttcttatg aaagtttgct tttaatgcaa
     6541 gaagcttgtc taaaaagtaa ggatttagaa aaaaaactag gaatttcggt agaatttttt
     6601 gcttttttga aaaataacga atatcttttt tcttttttta aagaactgag tttggaaaaa
     6661 aaaagcatag aagatcttaa aaacaatgat tattatgcca cctataatga acatttggaa
     6721 attttagatg aggtatataa gaattatct
//
LOCUS       DARGEY010000074         6748 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.074, whole genome shotgun sequence.
ACCESSION   DARGEY010000074 DARGEY010000000
VERSION     DARGEY010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6748)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6748)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6748
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.074"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..282)
                     /locus_tag="SF008_001284"
     CDS             complement(<1..282)
                     /locus_tag="SF008_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEG8233547.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKTE
                     FLAPVRGQITDRNGTLLAINDLGFSISIKPYLSIKKSNKGILDKELSELT"
     gene            complement(283..777)
                     /locus_tag="SF008_001285"
     CDS             complement(283..777)
                     /locus_tag="SF008_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233548.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFVYTPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWLAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILSYIGDEKIKILGWAYIVSVFIECCLTYVFF
                     KGKI"
     gene            complement(774..1370)
                     /locus_tag="SF008_001286"
     CDS             complement(774..1370)
                     /locus_tag="SF008_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HEG8233549.1"
                     /translation="MIISAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVACKRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRTSIKLFIHLIDSRHTHLEIDVNLNDYLKRFLRPDQKILKVFTKCDKLNQSE
                     KAKLKNEFKDSILVSNLNKFGLDSLEDIIINQTLGLDK"
     gene            complement(1367..1828)
                     /locus_tag="SF008_001287"
     CDS             complement(1367..1828)
                     /locus_tag="SF008_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HEG8233550.1"
                     /translation="MVARQIILLLACVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNASFKIVLKGKTYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(1810..2325)
                     /locus_tag="SF008_001288"
     CDS             complement(1810..2325)
                     /locus_tag="SF008_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233551.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNASTIKAYYKANSWVRYADRDEFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGSNNVKIISQEVEYQPKDKILHTNTNFKALINGSIINGNTLNYDIKNKILN
                     IQGVSAWLQDK"
     gene            complement(2316..2804)
                     /locus_tag="SF008_001289"
     CDS             complement(2316..2804)
                     /locus_tag="SF008_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HEG8233552.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFDVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIEILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIVLSKQGGKAAVAQMIEILVEKNHLKEEWNKL
                     WL"
     gene            complement(2810..3637)
                     /locus_tag="SF008_001290"
     CDS             complement(2810..3637)
                     /locus_tag="SF008_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HEG8233553.1"
                     /translation="MQIKTITLKLSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGAKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYEGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAASGAFAGAFVVRE"
     gene            complement(3597..4715)
                     /locus_tag="SF008_001291"
     CDS             complement(3597..4715)
                     /locus_tag="SF008_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEG8233554.1"
                     /translation="MKKNLLCFLICFNFLFAQINTPEFYERQMNVLRNLDINPSFISD
                     LIFVQTQQDIKSKHAQTLIDSMQNFSKVTPMIRKILAQQEVPDEILYLAMVESGLKTH
                     SVSNAKAVGVWQFMQPTARNLGLRIDAYVDERRDPVKSTYAATNYLKELKEEFGKWYL
                     ALLAYNCGNGKLRQAIKQAGSDDLSVLLNPDKKYLSLETRNFIRKILTLAFLANDRDF
                     LLDKDASLMNYALSNEFAKVDVPSSASLKEIAKNLNMDLATFKKYNPQFKHNFTPPGK
                     GYYMYIPLNKVAFFDKNFKAEKLAKVDTTIPMTRTYTVKSGDSLYKIAKNYNISVDEI
                     REFNKIAKNHLSINQKLIIPIKENKNANKNNYTKVVSR"
     gene            complement(4715..5530)
                     /locus_tag="SF008_001292"
     CDS             complement(4715..5530)
                     /locus_tag="SF008_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEG8233555.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIEKI
                     IIPGADIKDLPYAATIAHKYKNIFFAAGVHPYEIDNYDEKILRQYLCDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEDGFYFGIGGVLTFKNAKKLVEILPKIPKDRLLLETD
                     APYLTPEPYRGKRNEPLLTQLVANKMCEVLNLSRKELLEICFNNSEKLFFKGY"
     gene            complement(5521..6729)
                     /gene="cbrR"
                     /locus_tag="SF008_001293"
     CDS             complement(5521..6729)
                     /gene="cbrR"
                     /locus_tag="SF008_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HEG8233556.1"
                     /translation="MLGKLLAKKIQMTLDYEVDIAFGFAEAKELMNNDYFLAFVDLCL
                     PDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKESETCIDEIISSI
                     VKLNQYAKTKVIVAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMSYLNDNNDVKLII
                     ADVNMPVISGFELLTQVRERFSDDELGVILLGDHNDSFEANSFKNGVNEYLFKPLSKE
                     SFNCRLDRCLSYMDDKKFLSTYNVLDLVSGVKNYNALIDGIDDYFNEIATKDEEFAFA
                     FLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAEKICILLKNISQE
                     RAIKIFSRIRVNIKKAGVLVNLDEVFFTASIGVVFGKSGDKIDSLVDKASKILSQAKD
                     NGKDRVEVCS"
BASE COUNT         2363 a         1216 c          753 g         2416 t
ORIGIN      
        1 tgtaagttca gataattctt tatctaaaat tcctttattt gactttttaa tacttaaata
       61 aggtttaata gaaatactaa aacccaaatc attaatagcc aataaagttc catttctatc
      121 tgtaatttga cccctaacag gtgctaaaaa ttcagttttt atggcatttt gtttggcaag
      181 ttcttcataa tatacatttg attttatact caaataatac acacgactta ataaaaatat
      241 aaaaaacaat agtataaatc caacaactaa acgcattctc atttaaattt tacctttaaa
      301 aaacacataa gttaaacaac attctataaa aactgaaaca atatacgccc atcctaaaat
      361 tttaattttt tcatctccaa tataagacaa tatcatatcc aaaaacaaaa taatgccgta
      421 agcacaaagc acaaaaacaa cagggataaa tttaccaatt tttaaatttg tcttaatcca
      481 atctgcacaa agataataaa aaataaaaaa tgccaaccaa gatgaaaaaa taaaaaaatt
      541 ataagttata tcagtaaaaa ataaaaaaaa taaagaaaaa taccatctaa aatcaagctt
      601 tgaaaaagtt ctctctctct cttctaataa gcaaaacata taacagaaaa aaatcccata
      661 aagtaacggg gtatatacaa aagtcgaacc aagaatctga taaattagaa aaaaaaatcc
      721 taaaaagaca taagctccat taaattttgc tttataagca cttaaatttc ttctcattta
      781 tcaagaccta aagtttgatt gataataata tcttctaaag aatcaaggcc aaatttattc
      841 aaatttgaaa ctaaaataga gtctttaaat tcatttttta acttagcttt ttcactttga
      901 tttaatttat cgcatttggt aaaaactttt aaaatttttt gatcaggtcg taaaaatctt
      961 ttcaaatagt catttaaatt tacatcgatc tctaaatgag tatgtcttga gtcgattaaa
     1021 tgtataaata actttatcga ggttcttaat tttaaaaatt catctaagtt ttgattccat
     1081 atttctttta aatttttaga aacctttgca taaccaaacc ctggtaaatc gataaaattg
     1141 atattaaatt tttcttcatt tcttttgcaa gctacttcga aaaaatttat aagctgagtt
     1201 tttccaggag ttgccgaact tttggctaaa tttttttgtt tacacaaaga attgattaaa
     1261 gaactttttc cgacattgga acgccccaaa aatgctactt cactaaaatt tgagctcaaa
     1321 ttctcatcaa atttcactaa agaagtgata aatttagcac taattatcat ttgtctttaa
     1381 ggtcaaatac aaaacgagca ggtttttgat ccttgctctc tactcgataa atattagctt
     1441 ttctatcgac tattatttta tcaccaaaaa gtttttgatt gcttccaagc tcatttatat
     1501 aagcatgacc attaatctcg taagtatctt taataacatt ataaataaat ttatctccac
     1561 tacctttata agttttacct tttaaaacaa tcttaaagct agcattttgc attgcttcat
     1621 aacgaatagg tttgcgattt ttatccgtat aaataatcaa tttttcagaa tttaaaatat
     1681 catcacccct aattacttct acatttccac taagaatact ttcaccctta ttttcatctg
     1741 agtaaaaatt taaagctttt acttcaattt gagttgccca agttacactt acacaagcca
     1801 acaataaaat tatttgtctt gcaaccacgc acttactcct tggatattta aaattttgtt
     1861 ttttatatca tagtttaaag tatttccgtt aataatactt ccattgatca gagctttaaa
     1921 attagtattt gtgtgtaaaa ttttatcctt aggttggtat tctacctctt gagaaataat
     1981 tttgacatta ttagaaccta tataagtaac atttccttca aacaaaacct tgctcatatc
     2041 tttattgaaa aactctaaac gattcgcact aagattaaaa tctaaattta aagtaataaa
     2101 gtcattaaat tcatctctat ctgcatatct cacccaagaa tttgccttat aatatgcctt
     2161 aattgtacta gcattactct cataagcttt caaattttta gcctcaatat ttttaaaatt
     2221 taaagcatta gtttgcaaat tcaaagaata cggatcttgc aaacttaaaa tcgtaaaagt
     2281 aattgtaaaa agagcaatta aaattccaaa aatttttata gccaaagctt attccattct
     2341 tcttttagat gatttttttc tactaaaatt tctatcattt gtgctacagc agccttacca
     2401 ccttgtttgc taagcactat gtctacattt aaatctttat gaccatcttt tggcttaaaa
     2461 ctaagtccta cactttcaag taaagcctta tcgttaaaat aatccccaat agccgcacac
     2521 tgagaaaaat ctaaattaag tttttgtaaa atttcttttg cacaagctaa cttatccttg
     2581 atgccttgat ataaaatttc tatttttaaa tctttagctc ttttttcaac acaaggacaa
     2641 tttctacctg taataatagc aattttttta ccaagcttta gccaagcctc aatagccgct
     2701 ccatctttta catcaaattc tttaataaat tctccattag aagtataaat aatttttcca
     2761 tcagttaaac agccatctac atccaaaaaa atcaattctg tcataatttc tattctctta
     2821 caacaaatgc gcctgcaaat gcaccacttg cagcaaaatc ccttgcttca tcttcacttc
     2881 taaagcctgt taagaaaacg cgatttaacc catccactga acttgtgcgt atagtagagc
     2941 tataagttct ataagtttta tatcttgctg ctatcgtttg tgctccagct gggtttttaa
     3001 aggctccaat ttgaaccatg aaatttccac cttcataaat ttgtccatta tttgcaatct
     3061 ctccactatt tccatagttt acattagaat gtacaatatt attacccgaa ttacttgatc
     3121 caaaccctat aacctcaagc cttactggag ctgttcctga agcaatcata tcaatttgac
     3181 tagcagctcc ttttgataaa tctataatac gattatttac aaaaggacct ctatcattca
     3241 cacgaacggt aacttgacga ttgttattta gattggttac ttttaagatg gtattcatag
     3301 gtaaagtttt atgagccgcg gttaaagcat tttgattata ggtttcgcca ttagaggttt
     3361 tcttgccgtg aaagcctggc ccataccaac tcgcaatacc atcagcagtt tcgcctactg
     3421 ctacgacagt aggataataa gttttaccgt tgatagtata aggcttcatc gttcctttag
     3481 cccctgaaga actaggactg cttttaaaat catttgaagg ataatacact tgagcattat
     3541 ccaagctaga aaaaaaacta gtgcctaaac aaccactaaa aaataaagcc cctagactaa
     3601 cggctgacaa ctttagtgta attgttttta tttgcatttt tattctcctt gattggtata
     3661 attaattttt gattaatgct aagatgattt tttgctattt tattgaattc tcgaatttca
     3721 tcaacactta tattataatt ttttgctatt ttatataaag agtcaccaga cttaacggta
     3781 taagttcttg tcataggtat agttgtatca acctttgcaa gtttttctgc tttaaaattt
     3841 ttatcaaaaa atgctacttt attaagtggt atatacatat aatacccttt accaggaggc
     3901 gtaaaattat gtttaaattg tggattatat ttcttaaaag ttgcaagatc catatttaaa
     3961 tttttagcta tttcttttaa agatgcagaa gaaggcacat caacttttgc aaattcattg
     4021 cttaaagcat aattcattaa agacgcatct ttatctagta aaaaatccct atcattagct
     4081 aaaaaagcaa gcgttaaaat ctttcttata aaatttctag tttctaaaga aagatatttc
     4141 ttatcagggt tcaataaaac acttaaatca tcacttcctg cttgcttgat agcttgtctt
     4201 agcttgccat ttccgcaatt ataagctaaa agtgccaaat accatttgcc aaattcttct
     4261 tttaactctt ttaaataatt tgtagcggca taagttgact tgactggatc acgcctttca
     4321 tcaacataag catcgattct taaacccaaa tttctagctg ttggttgcat aaattgccaa
     4381 acccctacag ccttggcatt agaaacgcta tgagttttca agcctgattc aaccatagct
     4441 agatacaaaa tctcatcagg aacttcctgc tgggctaaaa tttttcttat cataggagta
     4501 acttttgaaa aattttgcat actatctatt aaagtttgag catgttttga ttttatatct
     4561 tgttgagttt gcacaaaaat caaatcacta ataaaacttg gattaatatc taaatttctt
     4621 aaaacattca tttgtctttc ataaaattca ggagtattaa tttgtgcaaa aagaaaatta
     4681 aaacatatta aaaaacacaa taaatttttt ttcattaata acctttaaaa aataattttt
     4741 cagaattgtt aaaacaaatt tctagaagtt cttttcttga taaattcaat acttcacaca
     4801 ttttgtttgc taccaattga gttaacaaag gttcatttct tttaccgcga taaggctctg
     4861 gagtaagata tggagcatca gtttcaagta gtagtctatc ttttggaatt ttaggtaaaa
     4921 tttcaactaa tttcttagca tttttaaaag ttaaaactcc cccaatacca aaataaaatc
     4981 catcttcaaa aagagttagc aaatgttcgc ttgcattaaa gcagtgtaaa actcctccta
     5041 caagatcctt agaataccca tgtaaaatct cataagtatc atgatttgct tctcttgagt
     5101 gaatgataac aggtttttta aattcaatag caagttcaag ctgtgcgata aaaatctttt
     5161 tttgattttc tttttctttt tgaatttctt cagcaagatc acttttaaaa cggaaataat
     5221 caagcccaca ttcacctaca gctacacact tttcatcgca taaatactgc cttaaaattt
     5281 tctcatcata attatcaatt tcataaggat gcacccctgc tgcaaaaaaa atatttttat
     5341 atttatgagc aattgtagct gcataaggca agtcttttat atcagcacca ggtatgatga
     5401 ttttctctat accattttta aaagcacgat ttaaagtttc atctaaatca tctttaaatg
     5461 cttcactgtc tagatggcaa tgcgtatcaa caatccttaa accatcttga aaatcaagat
     5521 ttaagaacat acttcaactc tatctttgcc gttatctttt gcttgagaca atattttact
     5581 tgctttatca accaaagaat caatcttatc tccacttttt ccaaaaacca cgcctataga
     5641 agctgtaaaa aagacttcat ctaaattaac taaaacacca gcttttttta tatttactcg
     5701 tatacgagaa aagattttaa tcgctctttc ttgggatata tttttaagta aaatacaaat
     5761 tttttctgca ctatatctac ctacaagatc tcttccttta gtttcattaa ctatttcatt
     5821 ggcgcagatt ttaattactt catcgccaac ttcacggccg tattcatcgt taatcatttg
     5881 aagattatct atatctaaga aagcaaaagc aaattcctcg tcttttgttg ctatttcgtt
     5941 aaaataatca tctattccat cgattaaagc attataattt ttaaccccag atacaagatc
     6001 taaaacatta taagtgctta aaaatttttt atcatccatg taagataaac aacgatctaa
     6061 gcgacaatta aaactttctt tgcttaaagg cttaaacaaa tactcattaa ctccattttt
     6121 aaaagaattc gcttcaaatg aatcattatg atcccccaaa agaatcacac ctaattcatc
     6181 atcactaaaa cgttctctta cttgagtcaa aagctcaaaa ccgctaatta ctggcatatt
     6241 gacatctgct ataataagct taacatcatt attatcattt aaataactca ttgcttcttc
     6301 accatgagcc gcagctaaaa cattaaattg tctttgagta agtatttttt taatttcatt
     6361 acgttcaggt agcttgctca tagctacaat cactttagtt tttgcatatt gattaagttt
     6421 tacaatagaa ctaataatct catcaatgca agtttcactt tctttaaaaa tataatctaa
     6481 tatatcttta tccataaatt tttctttagt agccttatca ccactagccg taagaacaat
     6541 agcaggaatt ttcttttcta taacataatc cacaacttca ccatttgggg catctggcaa
     6601 gcataaatcc acaaaagcta aaaaataatc attattcatt aactccttag cttcagcaaa
     6661 accaaaagca atatctacct cataatctaa agtcatttga atttttttag ccaaaagttt
     6721 gccgagcatt ttattgtcat caataatt
//
LOCUS       DARGEY010000075         6643 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.075, whole genome shotgun sequence.
ACCESSION   DARGEY010000075 DARGEY010000000
VERSION     DARGEY010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6643
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.075"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            667..1011
                     /locus_tag="SF008_001294"
                     /pseudo
     CDS             667..1011
                     /locus_tag="SF008_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789578.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1011..1568
                     /locus_tag="SF008_001295"
     CDS             1011..1568
                     /locus_tag="SF008_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEG8233557.1"
                     /translation="MAIEFDIQESKILKGVFIITPNSFKDLRGEIWSVFSSKDIESLL
                     PSNLKFVLDKFTLSKHNVLRGIHGDHKSWKLVTCVYGEVHQVVVDCRKDSPTYLKWER
                     FIINENNRKLILIPPYFGNAQYVSSKNDALYYYKWAYEGEYVDAKDQFTYAWNDSRIA
                     IDWSTDTPILSDRDIDATINDHIKG"
     gene            1573..2667
                     /locus_tag="SF008_001296"
     CDS             1573..2667
                     /locus_tag="SF008_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HEG8233558.1"
                     /translation="MNKQSKIYVAGHTGLIGSTILKKLQQDGFCNIICKTHQELDLMN
                     QEAVKYFFEKEKPDCVFFCAAKVGGMLAQLNQRAEFLYNNLVMQSNVIHYSYLNGVKK
                     LIYLGSICIYPEEVQLPIKESSLLTGKLQYNNEPYAIAKIAGLKMCEFYSLQYGVDYI
                     SIMPVSIYGSNDNFDIQTAHVQAAIFRKIYLAKLLNECNYKELIDDLGVKTKEEAFMI
                     LKQNNINDKSVKLLGTGNSRREFLHCEDLAEASIYIMKNISFNEVVEREGWNQGNAHI
                     NIGTGEDISIKELAYMIKDILEYRGEVLFENKMENDGTARKVIDTNKIRALGWHYKIE
                     LRDGLVRMYHDYKKGVKQNEKIYTSFINLG"
     gene            2630..3796
                     /locus_tag="SF008_001297"
     CDS             2630..3796
                     /locus_tag="SF008_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002808681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEG8233559.1"
                     /translation="MKKYTLASSTWDEKELQAIQDVIKSDMFTMGKKVAEFEKDFAKF
                     TGSKYAVMTSSGSTANLIATAALFYTKNPKLKRGDEVIVPAVSWSTTYYPLYQYGLKL
                     KFVDIDLETLNYDLDALSSAISDKTKMIMVVNLLGNPNDFDTINDLIKGKDIILLEDN
                     CESMGAEYKGKQTGTFGIMGTFSTFFSHHMATMEGGFVVTDDDELYHILLCLRAHGWT
                     RNLPKENLVANKSDDWFSESFRFVLPGYNVRPVEMSGAIGIEQLKKLLMFLKHRRENA
                     KLFCEYFQNHPEFIMQKEIGSSSWFGFSLVIKPNSKLQRKDIIKKLEENDIEYRPIAT
                     GDFTQNEVIKYFDYEIHQELKNAKYIHEKGFFVGNHQFSISNQINLFKKVLDSL"
     gene            3793..4824
                     /locus_tag="SF008_001298"
     CDS             3793..4824
                     /locus_tag="SF008_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEG8233560.1"
                     /translation="MKKTALITGFTGQVGSQMADFLLANTDYEVIGMMRWQEPMDNIY
                     HLSDRINKKDRISIFYADLNDYSSLQKLFESQRPDVIFHLAAQSYPKTSFDIPIETLQ
                     TNIIGTANILENIRILKAKDGYDPVVHVCSSSEVYGRAKVGIKLNEDTTFHGASPYSI
                     SKIGTDYLGRFYGEAYNIRTFVTRMGTHSGPRRSDVFFESTVAKQIALIETGYQEPVI
                     KVGNLSSVRTFQDARDAIRAYYLLSLESQKGKVPCGEAFNIAGEEAFKLPEVIEILLS
                     FSTRKDIKIEQDEERLRPIDADYQMFDNTKIKSFINWKPEIAARKMFEDLLNHWRDEI
                     KKGRIPLNR"
     gene            4821..5840
                     /gene="hddA"
                     /locus_tag="SF008_001299"
     CDS             4821..5840
                     /gene="hddA"
                     /locus_tag="SF008_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 7-phosphate kinase"
                     /protein_id="HEG8233561.1"
                     /translation="MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCT
                     LIEREDGKIIFDSPDTNSYSEYESKEFLENDGKLDIFKSIYNRIVKDFTKKPLSFSLH
                     TYSDVPSGSGLGGSSTLVVGVIKAFSEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQD
                     QYAATFGGFNFMEFYNNKRVIVNPLRIKNWIASELETRIVLYFTNITREAKDIEEHKK
                     GKLGDEKSLEAMHAIKQDAIKMKEALFKADFDTLAKILGKSWQSKKIISEIVSNDELE
                     RIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKTLSKEQGYVQDFSFTKEGV
                     KSWRI"
     gene            5828..6433
                     /gene="gmhA2"
                     /locus_tag="SF008_001300"
     CDS             5828..6433
                     /gene="gmhA2"
                     /locus_tag="SF008_001300"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEG8233562.1"
                     /translation="MENLNSYIKEHFQESILVKEQILKDENLITLIKNTSLEVIKAYK
                     NGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALSTDTSILTAISNDYGYEN
                     LFARQVQAQGVKGDVFIGISTSGNSKNILKALELCKQKEIISIGLSGASGGAMNELCD
                     YCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ"
     gene            6421..>6643
                     /locus_tag="SF008_001301"
     CDS             6421..>6643
                     /locus_tag="SF008_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HEG8233563.1"
                     /translation="MQAIILCGGLGTRLKSVIKDIPKPMAPINNKPFLEFIFEYLKKQ
                     GIKEVILAVSYKYEVIQEYFKDEFLGIKIK"
BASE COUNT         2511 a          762 c         1244 g         2126 t
ORIGIN      
        1 tttgtaaacc aagatactgt tgttaatcct agtatgcttt tgcgatctcg atttgatttt
       61 gcttattata atattaagaa caaaaaaggc tatagggtaa ttcagcaaag atttaatgcg
      121 cttggtgaaa ttgaacttta tattaaaaaa ttaagacaat tttacaaaga cagtgttaaa
      181 ataaatttta tatcagatgg aatggattta ggatttaata ttgtcaatag agaagatata
      241 agaaataagt taaagaaatt aggaataaaa gttgatgatg agtttttgca aagaagtacc
      301 gagcaatcca tttttaaatt aaataattta aaaaaatatt gtgatgaatt tatagttgga
      361 gagagtgttg ataaatttat acaaaccaaa aatcttttat taagatctaa tataatagtt
      421 agctctgcaa gattattttg ctggggtgtt ttatctgctt ttaaatacga ttttacgttt
      481 aaacaagttt tatttatgaa taatagtggc agttattatg atattataga taataaaaat
      541 gtaaaaattg aacaatataa aaattttaat tactgcataa ataatgtttt taaatatata
      601 aatcattttt taaataaaga tattatcgat aaaatcgaaa atcattttaa tgaaagcgct
      661 aaaattcgca ttcaaaatca gctctcatat aaactaggtc aagctatgat agttagctct
      721 aaatctatat taggctatat aagaatgcct tttgtgttat catatatata tgataaatac
      781 aaacaagagc aaaaaattta tcaagaaaaa attaaaaaag atccttcttt aaaattacct
      841 tctttagaaa actatcctga ttataaggaa gctttaacat ttaaaaatca tctttcttat
      901 aagctaggtc aagctcttat aaaggctaat aaaacttggt ataagggagg gtatattaag
      961 atgttatttg aaattcggga attaaaacag aaagcaaaaa aagggaaata atggcaatag
     1021 aatttgatat acaagaatca aaaattttaa aaggtgtttt tataataacg ccaaatagtt
     1081 ttaaagattt aagaggggaa atttggtctg ttttttctag caaagatata gaaagtttat
     1141 taccttcaaa tttaaaattt gtgctagata aatttacatt atctaagcat aatgtattaa
     1201 gaggtataca tggggatcat aagtcttgga aattagtaac ttgtgtatat ggtgaagtgc
     1261 atcaagtggt agttgattgt agaaaagact ctcctactta tctaaagtgg gaaagattta
     1321 tcattaatga aaataataga aaattgattt taataccacc atattttgga aacgctcaat
     1381 atgttagttc aaaaaatgat gctttatatt attataaatg ggcttatgaa ggtgaatacg
     1441 ttgatgctaa agatcagttc acgtatgcat ggaatgatag tagaattgct atagattggt
     1501 caacagatac ccctatatta tcagatagag atatcgatgc aacaatcaat gatcacataa
     1561 aaggctaaaa ttatgaataa gcaatctaaa atatatgttg caggtcacac gggtttaata
     1621 ggatctacaa ttttaaaaaa attgcaacaa gatggttttt gtaatattat ttgcaaaact
     1681 catcaagaat tagatttaat gaatcaagag gccgtaaaat atttttttga aaaagaaaaa
     1741 cctgattgtg tctttttttg cgcggcaaaa gtaggaggaa tgcttgctca gttaaatcaa
     1801 cgtgcggaat ttttatataa taatcttgtt atgcaaagta atgtgattca ttattcttac
     1861 ttaaatggag tgaaaaaact tatatactta gggagcattt gtatttatcc cgaagaagtg
     1921 caattaccta tcaaggaaag tagtttactt actgggaaat tgcaatataa taatgagcca
     1981 tatgctattg ctaaaatagc aggacttaaa atgtgtgaat tttatagttt gcagtacggt
     2041 gtggattata tttcaattat gcccgttagt atttatggct ctaatgataa ttttgatata
     2101 caaacagcac atgtgcaagc tgccattttt agaaaaattt atttagcaaa attgttaaat
     2161 gaatgtaatt ataaagaatt aattgatgat ttgggagtta aaacaaagga ggaagctttt
     2221 atgattttaa aacaaaataa tattaatgat aaatctgtaa aattattggg tactggtaat
     2281 tcacgaagag aatttttaca ttgtgaggat ttggcagaag ctagtattta tattatgaaa
     2341 aatatatctt ttaatgaagt tgtcgaacga gaaggatgga atcagggtaa tgctcatatt
     2401 aatattggaa caggagagga tatatcaatt aaagaattgg cttatatgat taaagatatt
     2461 cttgagtata gaggagaagt gctttttgaa aataagatgg aaaatgatgg aactgccaga
     2521 aaagttatag atactaataa aattagagca ttaggatggc attataagat agaattaaga
     2581 gatggtttgg tgagaatgta tcatgactat aaaaaaggag taaaacaaaa tgaaaaaata
     2641 tacactagct tcatcaactt gggatgaaaa agaattacaa gcgatacaag atgttattaa
     2701 aagcgatatg tttactatgg gtaaaaaagt agctgaattt gaaaaagatt ttgctaaatt
     2761 tacgggctcg aagtatgcgg ttatgacaag ctcagggtca actgcaaatt tgatagcaac
     2821 agcagccttg ttttatacaa aaaatcctaa attaaaaaga ggagacgaag ttatagttcc
     2881 tgcggtatca tggagtacta cttattatcc actttatcag tatggcttga aattaaaatt
     2941 tgtagatata gatttagaaa cactaaatta cgacttagat gctttaagta gtgctattag
     3001 cgataaaaca aaaatgatta tggttgtaaa tttattagga aatcctaatg attttgatac
     3061 gattaatgat cttatcaaag gaaaagatat tattttatta gaagataatt gcgaatcaat
     3121 gggggcagag tataagggaa agcaaactgg aacttttggt attatgggaa ctttttcaac
     3181 cttcttttct caccatatgg ccacaatgga aggtggtttt gttgtcacgg atgatgatga
     3241 gctgtatcat attttgctat gtttaagagc gcatggttgg actagaaatc ttccaaaaga
     3301 aaatttagta gccaataaaa gcgacgattg gtttagtgag tcatttcgtt ttgtgttgcc
     3361 aggatataat gtgcgtccag tggaaatgag tggggctatt ggtatagaac agcttaaaaa
     3421 attacttatg tttttaaaac atcgtagaga aaacgcgaaa ttattctgcg aatactttca
     3481 aaatcatcct gaatttatta tgcaaaaaga aattggaagt agctcatggt ttggattttc
     3541 attggtaatt aaaccaaatt ctaaattaca aagaaaagat attattaaaa aactagaaga
     3601 aaatgatata gaataccgtc ctatagctac tggagatttt acgcaaaatg aggtaattaa
     3661 gtattttgac tatgaaattc atcaggaatt aaaaaatgca aaatatattc atgaaaaagg
     3721 attttttgta ggtaatcacc aatttagtat tagtaatcaa attaatttat ttaaaaaagt
     3781 attggatagt ttatgaaaaa aacagcacta attacaggat ttacagggca agttggttct
     3841 caaatggcag attttttgct tgcaaatacg gattatgaag ttataggaat gatgcgttgg
     3901 caagagccta tggacaatat ctatcattta agtgatagga ttaataaaaa agatagaata
     3961 agcatttttt atgcagattt aaatgattac tctagtcttc aaaaactttt tgagagtcaa
     4021 agacctgatg tgatttttca cctagcagct cagtcttatc caaaaacttc ttttgatata
     4081 ccgattgaaa ctttacagac taatataata ggtacggcaa atatcctaga aaatattaga
     4141 attttaaagg cgaaagatgg ttatgaccct gtagtgcatg tatgttcttc tagtgaagtt
     4201 tatggtagag caaaggtagg tattaagtta aacgaagata caacttttca cggtgcaagt
     4261 ccttatagta taagcaaaat cggcaccgat tatttaggaa gattttatgg cgaagcttat
     4321 aacattcgca cttttgttac aagaatggga acacatagtg gcccaagacg ttctgatgtg
     4381 ttttttgaaa gcacggttgc aaagcaaatt gctttgattg aaacgggtta tcaagagcct
     4441 gttatcaagg ttggaaatct ctcaagcgta agaacctttc aagatgccag agatgctata
     4501 agggcttatt atctactttc attagaaagc caaaaaggaa aagttccttg tggggaagct
     4561 tttaatatag caggagaaga ggcttttaaa ctcccagagg ttatagaaat tcttttatct
     4621 ttttctacaa gaaaggatat aaaaatagag caagatgaag aaagattgcg tcctattgat
     4681 gcggattatc aaatgtttga taacacaaaa atcaaaagtt ttattaactg gaagccagaa
     4741 attgcagcta gaaaaatgtt tgaagatttg ttaaatcatt ggagagatga gataaaaaaa
     4801 ggaaggattc cgttaaatag atgaaaacca tacgcacaca aactcctctt cgccttggtt
     4861 tagcaggtgg agggactgat ataaatttat attgtgataa atacacaggt tatgttttaa
     4921 atgcgactat atctttatac atacattgta ctttgatcga aagagaagat ggaaaaatca
     4981 tttttgattc gcctgataca aattcttact ctgagtacga aagcaaagaa ttcttagaaa
     5041 atgatggaaa attagatatt tttaaaagca tttacaatcg cattgtaaaa gattttacaa
     5101 aaaaaccttt gagtttttct ttgcatactt attcggatgt accaagtggt agtggcttgg
     5161 gcggaagctc aaccttagtt gtaggtgtta taaaagcttt ttcagaatgg cttaatttac
     5221 ctttagggga atatgaaatc gctaagcttg cttatgagat agaaagagaa gatttaggca
     5281 tagtaggcgg agcacaagat caatacgctg caacttttgg cggctttaat tttatggaat
     5341 tttataacaa taaaagagtc attgttaatc ctttgcgtat aaaaaactgg attgcaagtg
     5401 agcttgaaac tagaattgtg ctttatttta caaatatcac aagagaagca aaagatatag
     5461 aagaacataa aaaaggaaaa cttggagatg aaaaatctct cgaagctatg cacgccataa
     5521 agcaagatgc aataaagatg aaagaagctt tgtttaaggc ggattttgat actttggcga
     5581 aaattttagg aaaatcttgg cagtcaaaaa aaatcatttc tgaaattgtt agtaatgatg
     5641 agcttgaaag aatttataaa ctagctatag ataatggagc ttatagtggc aaaaccagtg
     5701 gagcaggagc aggtgggttt atgtttttct ttgtggatcc tactaaaaaa tacaacttaa
     5761 tcaaaacttt aagcaaagag caaggttatg tgcaggattt ttcatttaca aaagaagggg
     5821 ttaaatcatg gagaatttaa attcatatat aaaagaacat tttcaagaat caattttagt
     5881 aaaagagcaa attttaaaag atgagaattt aataactctt attaaaaata cttcattaga
     5941 agtcataaaa gcttataaaa atggtaacaa aactttatta gcaggaaatg gtggcagtgc
     6001 tgcagatgca cagcatatcg caggggaatt tgtaagtaga ttttattttg atagaccagg
     6061 gatcgcaagt attgcacttt caacggacac gagtatatta actgctatca gcaatgatta
     6121 tggttatgaa aatttgtttg caagacaagt gcaagctcaa ggagttaagg gagatgtttt
     6181 tataggaatt tctacaagtg gaaatagtaa aaatatttta aaggctttag agctttgcaa
     6241 acaaaaagaa atcataagca taggcttaag cggagctagt ggcggggcta tgaatgagct
     6301 ttgtgattat tgtataaaag taccttcaac ttgcacgcca agaattcaag aagcacatat
     6361 tttaatagga catattattt gtgctatcgt tgaagaagag ctttttggta aaggtttttc
     6421 ttgcaagcaa taatactttg tggtggctta ggaacaaggc ttaaaagcgt tataaaagac
     6481 attcctaagc ctatggcacc cataaataat aagccttttt tagaatttat ttttgagtat
     6541 cttaaaaagc aaggcataaa agaagttatc ttagcagtat catacaagta tgaggtgata
     6601 caagaatatt ttaaagatga gtttttaggt ataaaaataa aat
//
LOCUS       DARGEY010000076         6571 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.076, whole genome shotgun sequence.
ACCESSION   DARGEY010000076 DARGEY010000000
VERSION     DARGEY010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6571)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6571)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6571
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.076"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..520)
                     /locus_tag="SF008_001302"
     CDS             complement(<1..520)
                     /locus_tag="SF008_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEG8233564.1"
                     /translation="MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVG
                     SHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSYTLSNVGLSKGVYEAYLFFFDNA
                     FLIELIYKYKDFFKLDQKFQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLK
                     FEEIFLHLLLNKN"
     gene            complement(517..1122)
                     /locus_tag="SF008_001303"
     CDS             complement(517..1122)
                     /locus_tag="SF008_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEG8233565.1"
                     /translation="MWDKKIIAISDRKCVEIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICAKQKVTCFLHFFDRECLKLGHRYFHAPLSLLRKEPKLTKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVGHIFESSCKMGLEPKGLDFLKSLLEFSQIPLYAIGG
                     INAQNIENFKDINVVGVCMREILMKEKDLKKYLLECRQNLR"
     gene            complement(1112..2257)
                     /gene="thiH"
                     /locus_tag="SF008_001304"
     CDS             complement(1112..2257)
                     /gene="thiH"
                     /locus_tag="SF008_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HEG8233566.1"
                     /translation="MQDYMQYLPHMQEIKSEILNKVLTQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLSEAEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEDEYKILHEKGCDYVTVFQETYNALKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFGALLGIDDFRKDALATALHAHFLQQAYPHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILAMLKRSNLQAVMSDSIYVG"
     gene            complement(2260..3036)
                     /locus_tag="SF008_001305"
     CDS             complement(2260..3036)
                     /locus_tag="SF008_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HEG8233567.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKTQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNADEALRIARLSRELGCGELIKIE
                     VISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAARAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPSQACEAMQMGVSAVMVNTAIAEAKDV
                     ALMAKAFSLAVNAGRAAFLAGLASVSKAKASSPLTGFLRD"
     gene            complement(3039..3842)
                     /gene="thiF"
                     /locus_tag="SF008_001306"
     CDS             complement(3039..3842)
                     /gene="thiF"
                     /locus_tag="SF008_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HEG8233568.1"
                     /translation="MMRVKFNGKELDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KIDEDNLKSLFKDIDIVCEAFDSAIAKAMIAQNFHRFYKDSVLICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKLGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(3839..4030)
                     /gene="thiS"
                     /locus_tag="SF008_001307"
     CDS             complement(3839..4030)
                     /gene="thiS"
                     /locus_tag="SF008_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HEG8233569.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGLKIELIALELNGEIIPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(4027..5469)
                     /locus_tag="SF008_001308"
     CDS             complement(4027..5469)
                     /locus_tag="SF008_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG8233570.1"
                     /translation="MNLNQTLQEKYPHLEVSVLKLSEVKKNIDFRIDDSFWTMKLIYN
                     NKLNYKKIGECLLKSQYGISINMNEEGDGIPIYRMNDIDNMLCNFEVKKYALIDKNEL
                     QTFRLNYGDVLFNRTNSYEFVGRTGIFYNNRENFVFASYLVRLVCNKEILLPEYLTVF
                     LNTHIGKKEIRRRARPSINQTNVNPEELKEIKIPIFPMEFQLEIQNLVKDSHKALEES
                     KELYKKAEETLYLELGLDPKNPLQSLLDSKTNNPTNSPNISIHTLKESFLKTGRLDSE
                     YYQSKYEDIEKMIRSYKDGFCNLKDLVNDISSGFAFSSDDYQDVGELVLIRINNIKNA
                     TLDLSNVIYLKNEAYNLSPKDKIKKGDILISMSGSIGLSCVVRDDISAMVNQRILKIS
                     IKNFNSDVLVLLLNSFICKMQFERIGTGGVQTNLSSIDMQNILIPKIDSTTQEKIAKY
                     IQESFNLRKKSKQLLDNAKIKVEEQIQGKI"
     gene            complement(5595..6098)
                     /locus_tag="SF008_001309"
     CDS             complement(5595..6098)
                     /locus_tag="SF008_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233571.1"
                     /translation="MYHLLDFSTCKCENEKFDLAYKIFKQDFIEAPLYLAGCIYIDPQ
                     SHKKHKGKEKIFWHITTRENKQNKTREFDSQRACRINWIKQIIINHTHSEIKAFYYKE
                     KRAIRFYLWLYNHNFIVILQKLGRSSSFLVTSFYIDKGYNKNIYEKRYRNYINGNDIE
                     LKNCEWF"
     gene            complement(6101..>6571)
                     /locus_tag="SF008_001310"
     CDS             complement(6101..>6571)
                     /locus_tag="SF008_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HEG8233572.1"
                     /translation="SVYMWFKAVLIPNKTILQHDIYNQGDHDLFYYKMYYQALHNLID
                     IDTKIKIYLDYKDTKSGDKIKGLEKVLFNKFKQSVNIKIFTIQSHESNIVQLVDLLIG
                     AISYKARNDIEHVSEIKNYIINKIETLANIELDAGTPPWENKCNIFRIQLGKGE"
BASE COUNT         2119 a         1234 c          777 g         2441 t
ORIGIN      
        1 tattcttatt taaaagcaaa tgtaaaaaaa tctcttcaaa tttcaaactc actataggat
       61 ctaaaatttg cgtattttct tcaaaatgcg gtgaaaaact ttccaaaatt ccttgcaaaa
      121 tcttatcatt ttttacccaa aaaatttcat agttttgaaa cttttgatct agtttaaaaa
      181 aatctttata cttataaata agctcaatta aaaatgcatt gtcaaaaaaa aataaataag
      241 cttcataaac tcctttacta agtcctacat tgcttaaagt atagctccca gcttttaaaa
      301 acaaagtttc ataagagtta atcttataat cttttgatgc agtgtgtaaa attttatatc
      361 ctttgcgaac aaaagttaaa agatgacttc ctacattaac aaaagtagaa tgcgaagtat
      421 ccgtttgtgt atatttagca aaagtgcaag atttaatttt tttataattg acacctttta
      481 attgctttaa atcttctggt aaagaaagaa ttttattcat cgtaaatttt gcctacattc
      541 taaaagatac tttttaagat ctttttcttt cattaaaatt tcacgcatgc aaacacctac
      601 tacatttata tctttaaaat tttctatatt ttgagcattg ataccgccta tagcataaag
      661 tggaatttga ctaaattcaa gcaaggattt taaaaaatca agccctttag gttctaaacc
      721 catcttgcaa gaactttcaa aaatatgccc tacaaaagca taatttacct tatagctcat
      781 cgcctctaaa agctcttctt tgctatggac tgaagtacca agtatatgaa aatattttgt
      841 taatttaggt tcttttctta gcaaagaaag cggtgcgtga aaataacgat gtcccaattt
      901 taaacactcc ctatcaaaaa aatgcaaaaa acaagtcact ttttgctttg cgcaaatgct
      961 taaaacttct tttgctaagt cataatactc aaattcgctt aaatcttttt ctcttaaaac
     1021 tatagcatct accttagcct tagcaagttt ttcaatctgc tttaaaaagt ctatttctac
     1081 acattttcta tcgcttatgg cgatgatttt tttatcccac atagatacta tcgctcatca
     1141 cagcttgtaa attggatctt ttaagcatag ctaaaatttc atccacgctc ctatcatctg
     1201 aaatttcaaa ctgctcatca ccctttttct cacccttatg ctcacctata cccacactca
     1261 ctcctgcact cattttagta gcaccaagct tgataacctc atctctaaag cctattcttt
     1321 cacgacttga aatggtaatg cctgcaaaag gtaaaaaaag tctataagca caaagtactt
     1381 gcaaaaggcg tttttcactc acatctttag gatgaatttt agcattattg ataataggtc
     1441 ttaaacgagg caccgaaata gaaatttcag catgaggata agcttgttgt aaaaaatgcg
     1501 catgaagtgc cgtagcaagg gcgtcttttc taaaatcatc tatacccaaa agtgcgccaa
     1561 aagccactcc acgcataccc gcttttaaag ctctttcttg agcattaaag cgataaggga
     1621 aaatgcgttt ttcaccagct aaatgaattt tagaatattt taaagcattg taagtttctt
     1681 gaaaaacagt cacataatca caaccctttt catgcaaaat tttatattca tcttcattca
     1741 taggataaat ttcaacgcct acaaccttaa aatactctct agctatttta caagcatttg
     1801 ctatatattc tacacttgca aactccctac cctcgcctgt tagcattaaa atttcttcta
     1861 aaccactttt agcaatggct tgcatttctt cgtgaatttc agcttcactt agcttggctc
     1921 ttgcgatttt attacctttt tgaaaaccac aataaacaca tttagaatta caataatttg
     1981 acaaataaag tggggtaaaa agagagatag aatttccaaa atatttttgc ttgactttag
     2041 cggatttaaa ggctaattct tctatgaaat cttctgctgc acttgaaagc aaagctttta
     2101 aatgctctat gcttaaatgt gtttgattta aagcattttt aacatcttta gcgctaaatt
     2161 gactctcatc ataactttga acttgagtta aaaccttgtt taaaatttcg ctttttattt
     2221 cctgcatatg aggtaaatac tgcatataat cttgcataat caatccctta aaaagcctgt
     2281 taatggagaa cttgctttag ctttactcac acttgccaaa cctgctaaaa aagccgctct
     2341 tcccgcattt actgccaaag aaaacgcttt ggccattaaa gcaacatctt ttgcttcagc
     2401 tatggctgta tttaccatca ccgcacttac tcccatttgc atagcttcac aagcttgtga
     2461 aggacttcca atacccgcat ctacaatgat aggcaaatca atttcattaa gcaaaatttg
     2521 tataaattcc ttagcacata agcctttatt actcccaata ggcgctgcta aaggcatgat
     2581 agccgcagct ccagcatcac gcatagctct agctgcgtaa agatcagcat gcatgtaagg
     2641 taagggtgta aaaccctctt tagctaaaag ctcgcaagct ttaatcgttt cataattatc
     2701 aggcaacaaa tacctactat cgcttatcac ttctatcttg ataagttctc cacaaccaag
     2761 ctctcttgaa agccttgcaa tgcgtaaagc ttcatcggcg tttcttgcgc ctgaagtgtt
     2821 gggtaaaagt gtgatatttt tagggatata atcaagtata ttagcaattt cccctgtatt
     2881 tgcacggcgt aaggctagag tgataatctg tgttttagct tcttctatag ctgattttat
     2941 aagctctagc gaatattttc cagaacctaa aataaatctt gaatcaaact cgtatttgcc
     3001 tatttttaat ttatcgtttt ttaaattttc ttgcattttt actccttatt tgctaaaagc
     3061 tctaaaacaa ggttactttg atgtcctgcg caaatattta cccttggcgc cataagtcca
     3121 tttcctagct tagcaccatt taccaaatcc ccacacacat agaaattttt agcaattttt
     3181 cttgtttgta tgctgttgct atcaccatag cccgcaagcc ctgaagcaca gattaaaaca
     3241 ctatctttgt aaaatctatg aaaattttgc gctatcatcg cttttgcgat agcactatca
     3301 aaggcttcac aaactatatc tatatcttta aacaaagatt ttaaattatc ctcatcgatt
     3361 tttaaggtac aaatttcaac gctgatataa ggattaattt cgctaatttg ctcttttaaa
     3421 gcttcggttt taaacttgcc caaatcactt acacgataag cctgacgatt taaattacta
     3481 ggctcaatca catcaaaatc aatcaacttt aaatacccca ctccacttct tgccaaattt
     3541 atcgctatat gtgatccaag tccgcctaaa ccacacaccg ccacgcgccc atttttaagt
     3601 ttatcgtgaa gctttggtgt atgtcttgct ctcatcatag catctagtgc gtcttttgga
     3661 ggtaaagtat ttttttctat acaaaaaagc tcatcatttt catttaaagc gatattctct
     3721 tttgttgcaa aaccattgat aatccataca tcattttcat ttttgctgat attttcaaaa
     3781 aattccaaac ttgttttaaa gtctgtatca agttctttgc cattaaattt tactctcatc
     3841 atccacctcc tacaaaactt acgatttcag ctttatcgtt ttcttttaaa atcaaatttt
     3901 caaattcact cttaggtata atctctccat ttaattccaa ggcgataagt tctattttca
     3961 agcctttttc tttgataaaa tccataaatt taagctcttt taactcaagc ttttgtccat
     4021 tgataatcat atttttcctt gtatttgctc ttctacttta atttttgcat tatctaataa
     4081 ttgtttagat tttttcctta aattaaagct ttcttgtata tattttgcaa ttttttcttg
     4141 agttgtagaa tctattttag ggataaggat attttgcata tctattgaag aaagatttgt
     4201 ttgaacccca cctgtaccaa ttctctcaaa ttgcatttta caaataaaag aatttaaaag
     4261 caataccaaa acatcactat taaaattttt aatcgaaatt tttaaaatcc tttgattaac
     4321 catagctgat atatcatctc taaccacaca agacaaacca atgctaccag acatagaaat
     4381 taaaatatca ccttttttta ttttatcttt agggcttaaa ttataagctt catttttaag
     4441 atagataaca ttgcttaaat ctagcgtagc attttttata ttattaatcc taattaatac
     4501 aagctctcca acatcttggt agtcatcact tgaaaatgca aaaccacttg aaatatcatt
     4561 aactaaatct tttaaattac aaaagccatc tttataactt ctaatcatct tttctatgtc
     4621 ttcatattta ctttgataat attcagaatc caatcttcct gtttttagaa aagattcttt
     4681 taatgtgtgt atagagatat ttggtgagtt tgtaggatta tttgttttag aatctagcaa
     4741 actttgcaat ggattctttg gatcaagtcc taactcaagg tataaagttt cctctgcttt
     4801 tttatacaac tccttacttt cttctaatgc cttatgagaa tcttttacca aattttgaat
     4861 ttctaactga aattccatag ggaaaatggg aattttaatt tcttttaatt cttcaggatt
     4921 tacatttgtt tgattaattg atggtctagc ccttcttctt atctcttttt taccaatatg
     4981 cgtatttaaa aaaactgtaa gatactctgg caacagaatt tccttattgc aaacaagcct
     5041 tactaaatat gaagcaaaaa caaagttttc tctattgtta taaaaaattc ctgttctacc
     5101 cacaaactca taggaatttg ttctattaaa caaaacatct ccataattta acctaaaagt
     5161 ttgcaattca tttttatcaa ttaaagcata ttttttgact tcaaaattac aaagcatatt
     5221 atcaatgtca ttcattctat aaatagggat accatcgccc tcttcattca tatttattga
     5281 aataccatat tgagatttta ataaacattc tcctattttt ttatagttca acttattgtt
     5341 ataaataagc ttcattgtcc aaaaactatc atctatgcga aaatctatat tttttttcac
     5401 ttcactaagt tttaatacac ttacttctaa atgcgggtat ttttcctgca aagtttggtt
     5461 taaattcatt ttattccttt ttttatttca atctaagtaa aaaatattta taattataaa
     5521 gctcaactac cggtggtaga aagagatggc tagcttttat gcttcttgca gatgcctaaa
     5581 tctgcaccaa acccctaaaa ccattcgcaa ttctttagct ctatatcatt tccgtttata
     5641 taatttctat atcttttttc ataaatattt ttattatatc ctttatctat gtagaaactt
     5701 gtcactaaaa atgaactact tctgcctagc ttttgtaaaa taactataaa attatggtta
     5761 tataaccaca aataaaaacg gattgcccgt ttctctttat aataaaaagc tttaatttcg
     5821 gaatgagtat gattgataat aatttgttta atccaattta ttctgcaagc tctttggcta
     5881 tcaaactccc ttgttttatt ttgtttgttt tctcgtgttg tgatatgcca aaatatcttt
     5941 tctttcccct tatgcttctt atgtgattgc ggatctatat aaatacaacc tgctaaatac
     6001 aatggagcct caataaagtc ttgtttgaaa attttataag ctaagtcaaa tttttcattt
     6061 tcacatttac aagtgctaaa atccaagaga tgatacatta ttattcacct ttacccaatt
     6121 gaatcctaaa aatattacat ttattttccc aaggtggcgt tcctgcatcc aattcaatat
     6181 ttgccaatgt ttcaatttta tttataatat aattttttat ttcacttaca tgctctatat
     6241 catttcttgc tttgtatgaa atagcaccta ttaacaaatc cacaagttga acaatatttg
     6301 attcatgtga ttgaattgta aaaattttta tatttactga ttgtttaaat ttattaaaca
     6361 aaactttttc caatcctttt attttatctc cactcttcgt atctttataa tcaagatata
     6421 tttttatttt tgtatcaata tctattaaat tatgcaatgc ttgataatac attttataat
     6481 aaaataaatc atgatctcct tgattgtaaa tatcatgttg cagaatggtt ttatttggaa
     6541 ttaatacagc tttaaaccac atatatacag a
//
LOCUS       DARGEY010000077         6519 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.077, whole genome shotgun sequence.
ACCESSION   DARGEY010000077 DARGEY010000000
VERSION     DARGEY010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6519
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.077"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..828)
                     /locus_tag="SF008_001311"
     CDS             complement(<1..828)
                     /locus_tag="SF008_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HEG8233573.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFVSYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYALALE
                     NGVDFVENIHSLSLKQFALSLCKKDDIFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFARPYKEFYELYMNLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     "
     gene            complement(815..1768)
                     /locus_tag="SF008_001312"
     CDS             complement(815..1768)
                     /locus_tag="SF008_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEG8233574.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNSTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLS
                     KELQSKLDNNITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRS
                     FSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            complement(1765..3207)
                     /locus_tag="SF008_001313"
     CDS             complement(1765..3207)
                     /locus_tag="SF008_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG8233575.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILILLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNVEEKA
                     IRLSSEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKIERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKENETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            complement(3302..4366)
                     /gene="fbaA"
                     /locus_tag="SF008_001314"
     CDS             complement(3302..4366)
                     /gene="fbaA"
                     /locus_tag="SF008_001314"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEG8233576.1"
                     /translation="MGVLDIVKAGVISGDELNKIYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKLD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKNAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMIKRLEIAFEDLNCINKN"
     gene            complement(4366..5187)
                     /gene="peb4"
                     /locus_tag="SF008_001315"
     CDS             complement(4366..5187)
                     /gene="peb4"
                     /locus_tag="SF008_001315"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HEG8233577.1"
                     /translation="MKKFSLVAATLIAGVVLNVNAATVATVNGKSISDTEVSEFFAPM
                     LRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVY
                     QEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGK
                     ELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK"
     gene            5268..5894
                     /gene="nth"
                     /locus_tag="SF008_001316"
     CDS             5268..5894
                     /gene="nth"
                     /locus_tag="SF008_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEG8233578.1"
                     /translation="MKRNLEIKELFLKHFDKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFDGEI
                     PLDEQNLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTRTFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            5891..>6519
                     /locus_tag="SF008_001317"
     CDS             5891..>6519
                     /locus_tag="SF008_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HEG8233579.1"
                     /translation="MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFEDDTNIPKKYRTTWSNYKNSGYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
                     LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQY"
BASE COUNT         2185 a         1180 c          773 g         2381 t
ORIGIN      
        1 taaaattcca ccttgatgta tataaagcaa tggttttttc cactcttgtt ttaatgctat
       61 acttaatcct aaaatatcat acaacaagtc aaattctata ttgcacttta actttaaatt
      121 catataaagc tcataaaatt ctttatacgg tctagcaaag tgatattttt tatcacttgt
      181 taaaaattct aaatttgaaa aatcatagct tggatctaat gttaaaattt gttttttaag
      241 atatttaata tcacctacac aagcgcaagt aaatacttta aatttagaat actttgccaa
      301 aaaagctgcc gaagtgcctg tgcccgaagg taaaaaaata tcaaaatcaa gctttaaact
      361 ttgactttgc atttgaattt cttgagcaag ttccatatag ccatattgag cttctaaatt
      421 agctatgcct tgttctataa aaatatcatc ttttttacac aaagacaaag caaattgctt
      481 taaagataaa gaatggatat tttctacaaa atcaacacca ttttctaaag ctaaagcata
      541 gtttccacaa ggattattct taagaaaagt agaaattttt tcacaagcaa aaacaagctt
      601 atatgatctt tgtttagcaa aaatacttaa tgccgccaaa gcattacttt ggcttcctcc
      661 ataacttaca aaagattgat ttttaggata tctttgatgg atataaaaag caagtttcct
      721 agctttattt ccattaattt ctcctaataa atcatctctt ttaatataaa attcaaatcc
      781 gttaaaattg attttttgta taggactaat tgttttaatg aaattcaaag aatttttcta
      841 catcttttaa agcattatca tttttaatgc taaattttat ttctatgcga cgactcttat
      901 ccttatcttc aactccgttg acaaacacgg gatctgaaaa agaacgtcca cttgccatta
      961 aaagcttttg aagcttatca ctcttataaa aagtatagat aaaattcatc acctcataag
     1021 ctcttttttg cgacaaatct aaattataaa tataagatcc atcactatca gtatgtcctt
     1081 caataatgat attttcaatg ttagaaaaaa tttttggatc ttcaagaata gcatcaaaat
     1141 attcgcttaa gatttttctc aaacttgcct ttgcctcatt ttttaacaca taagaatctt
     1201 tatcaaaaag tacttcagca ggcaaagaaa tagatcctgt cttttcatct atagtgatat
     1261 tattatcaag cttactttgt aattccttgc ttaaattttc acgaatcaaa ccaagatttt
     1321 gcaccttttc tttagctttt tgaaaatctt cttgtaaatt tttaagctct tcatcttttt
     1381 tctctagttg acctagtaaa atcaaaattt gcttatcttt attatctaaa gttgagttta
     1441 aatctttact taactgcttg taatttgtaa tattagcctc taattctgct ttttgagaat
     1501 tagcaagatt taaagcacta gaagcattgt ttaaatcaga acttagttta aacactatgg
     1561 cttctttatt tctaagctct tctttactct cctctaagcg tgcctcttgt ttattgagat
     1621 tatctttgat ttcttttaaa tcactttgag ttaaaacata ttttacaaca atagcaccta
     1681 ttagcaaaat aaaaacaaac agcaatcctg ccattaaatc agcataagct atccaaaaat
     1741 tgctatcttc ttttgactca tttttcattt attttcttta tcttcatttt ttagctcatc
     1801 attgctttct tgcttagata tttctgcttg aatttcatct tgattttctt cagtcttaga
     1861 ctctgaaaaa tcttctattt gtttggtttc attttcttta ttctgatttt catccccaga
     1921 aagcttgctc atcatttgac ttgtttcttc atcaagtgct ttcatttctt ttttaagctc
     1981 atccatcatt ttgattttag catcaatact tttttcttct tcatatactt ctttaaattt
     2041 atgcatacct tcaaacaagc ttgctttaaa tccctcaaaa accttttctt gactttccaa
     2101 cattgctttt tcataaagtt caaaattttt accaaaacgc tctatttttt catcgaatgc
     2161 acttagtgtc ttatcaagat gatgaatttt atcactactg atatcgagca agcgattata
     2221 ttgttctgac attcttgtat tgatttcttt taaattttga ttgagcaaac ctataccatt
     2281 taacatttca ctataaagct ttccaagatc gcgttgatct ctttgtgctt tactaagctc
     2341 acccatggtt tgtttgatat gttcactact taatctaata gccttttctt ctacatttag
     2401 catatcttgg aaaataccaa attttctatc aatagcatga tcaagctctg caaaaaaatc
     2461 atcattacta acttgtttaa aaattgctcc aattttttca aaatgttgca aactttcagt
     2521 taaatatctt tgatcaagct cttcttttgt ccaaaaaaat ccacttgtag cgtttttttg
     2581 acgatttagc aaacgatcta ttttgctttt accatatttt tcaaaaaaca tccaccataa
     2641 tgcaagaaaa attccataaa ttgaaacata aaaagcagtt cccactccac ttaacaaatc
     2701 tgcaatttct tgttctaaag cggctgtatc actagaacta aaatttggca ttgaaaaagc
     2761 tatactgata aaagttccta aaattcccat cattggaaaa attgccgaac ctatactagc
     2821 aaaattctca tttcttgcac ccttaatata tgtataagca aagtcatcaa aattggcatt
     2881 tgatttcgtg tctttcccta tggcaagaaa atgcctcata atatgtcttt ttaaagcctg
     2941 tttaaattca tctttttgtt gttcaaaaat actatacgca tactcagcac tatgtctagc
     3001 aaaaatcaat gctgtaaaaa aaatcacacc tgtcataata accgtatgta attcgacctt
     3061 aaagtcaatt acattaaaat aacccaataa aatcaaaata taaagaaaag ctggaataaa
     3121 aataatttta aaataaacca aagaacctct tgcatctttg ccttcaggca aaacaagttc
     3181 tgaaatttca tctgatttaa tatccatgaa accaatacct cattaaaaat tttattttaa
     3241 agattgctac ttaatttgat aaaaattttt aaaacaaaat aaaactaagc ttttaaaatg
     3301 cttagttttt gtttatacag tttaaatctt caaaagcgat ttcaagacgt tttatcatgc
     3361 tttcttcacc gcttcttaac caaacacgcg gatcatagta ttttttattt ggcttgtcat
     3421 caccttctgg atttccaatt tgtccttgca aataagccct atttttaagt tcatattcac
     3481 gcaccccatc ccaaaaagcc cattgagtat ctgtgtcaat attcatctta attacgccat
     3541 agcttactgc atttttaata tcttttagct cactaccgct accaccatga aatacaaaat
     3601 ttataggctt atcgctattt aaagcaaatt tatcttttac aaatttttgc gaatttttta
     3661 aaatttcagg ttgtaagcta acatttcctg gcttgtaaac tccatgtaca tttccaaagc
     3721 ttgctgcgat tgaaaattta tcactaattt ttccaagtct ttcatatgca agagctacat
     3781 cttctggttg ggtataaagc ttggaattat caatacctgt attatccact ccatcttctt
     3841 cgccacctgt acaacctaat tctatttcaa gcgcgacacc taaagcatca agtttttgaa
     3901 gataaacttc acaagtgcta agattttctt ctaaactttc ttcgctaaga tcaagcatat
     3961 gagaactaaa taaagcttgt ccatgggttt ttttatattg tgcatttgcc tcaataagcc
     4021 catcaatcca aggcaaaagt tttcttgcag catgatcagt gtgtaaaatc acaggtacac
     4081 cataagcttt agcaagtaaa tgtacatgtt tagccccact aattgcacct aaaacttctc
     4141 cattaggaca atttttccct gcataaaatt ttgccccacc atttgaaaac tggataataa
     4201 ctggagagtt aacttttttt gcagcttcta aaactgcatt aatagaatca gttcctacaa
     4261 cattaacagc agggatagca aaaccctctg ctttagcata gtcataaatt ttattaagct
     4321 catctccgct aatcacccct gcttttacaa tgtctaaaac acccattatt tatattccac
     4381 tttagcacta tttaagagat cttggccttt ttgattgata acttttttaa attcttcaaa
     4441 tttaagtccg ttttcaatac cttgttttac ttcatcaaat ttgatttgac ctttagcttg
     4501 cgaattttct tttaagatta catgataacc aaaattcgtt tttaccggag ttgtagtaat
     4561 agtaccattt ttaagcgcga aagcagcatc tgtaaaaggc tttaccatag ttgattgatc
     4621 aaaccaacca agctcaccac cttggttttt tgaacctgga tcaattgatt tctctttagc
     4681 aagctcgcta aatttagcat ctagttcttt accttttaaa cctttaagtt cgttaataat
     4741 atccttagct tctttttctg tcgctactaa gatatgtttt gcttgcactc ttgcaggttt
     4801 tacatatttg tctttatttt gatcataaaa agctttaact ttagccgcat caattttaat
     4861 agtatttaaa attttctctt gataaacatt aacaagtatt gcatcttttg cacgatcaag
     4921 ttcttttgtg tataaagggt ctttttctaa attttgtttt ttagcatctt gcaaaattaa
     4981 atcttgcata atatattgct gaataagagc ttttttttga ttatctggca aagttttaaa
     5041 atcctgtcct ctaagcatag gggcaaaaaa ttcacttact tctgtatcgc taatgctctt
     5101 gccattaaca gtagctactg tagctgcatt tacatttaaa actacacctg caatcaaagt
     5161 tgctgcgact aaagaaaatt ttttcattag gtttcctttt taataaaatg tatataaaat
     5221 caattatatc taaacttggt ttaaagctaa ttaactaaaa ttaaaaaatg aaaagaaatt
     5281 tagaaatcaa agaacttttt ttaaaacatt ttgacaagcc tgtaacagag cttaaatttt
     5341 caaatttata tgagctttta gtctgcgtaa tgctttcagc ccaatgcact gataaaagag
     5401 ttaatctcat cactcctgat ctttttaaag cttatcctga tattaaatcc cttgcaaatg
     5461 caaatttatc aagtcttaaa acctatatac aaacttgttc attttttaat aataaagcac
     5521 aaaatcttat aaaaatggca aaagcagttt gtgaaaattt tgacggagaa attccccttg
     5581 atgaacaaaa tttaaaatcc ttagcaggcg taggacaaaa aaccgctcat gtagttttaa
     5641 tagaatggtg cggagcaaat ttcatggctg tagatactca tgtttttaga gtttctcacc
     5701 gcttaggact tagcaaagca aaaactccag aagctacaga agaagattta acacgcacat
     5761 ttaaagataa tcttaactat cttcatcaag ccatggttct ttttggacgt tacacctgta
     5821 aagctaaaaa acctttatgt aaagaatgct ttttaaatca tctttgcaaa agtaaagata
     5881 aggaacttaa atgaaaattt tcatcttttt actcactata tctcttaata tttttgcctt
     5941 agaaccttac aagcctagtg ctgatttttc ttcttatttt aacaatataa attgctcgca
     6001 aatcttagat aagttttttt atctaaattg ctatgattat aaactcaaag gcacaaaagc
     6061 tgttgcttat aaggtagaag cttcaaattt gaaagataga caaatcaaaa aacgccctcg
     6121 ctttgaagat gatacaaata ttcctaaaaa ataccgcact acttggagta attataaaaa
     6181 cagtggttac acacgaggac acactgcgcc taatgcttct tttagcttta gtaaagctgc
     6241 tcaaaattca gtatttttaa tgagtaatat taccccacaa aatgcacaaa taaataataa
     6301 aatttggaat gaaatcgaac aaagagaaag aaatttagct ttagaatttc aaagtatcga
     6361 agttttaaat ttagtacttt acgataaaga accacaatac attaaaaacc gtattgctat
     6421 accaagtttt tatgtgaaaa ttattaaaac tccgaaattt aaagaatgct atcaagcacc
     6481 aaaccacgaa gtaaatgatg aaaatattaa acagtatca
//
LOCUS       DARGEY010000078         6313 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.078, whole genome shotgun sequence.
ACCESSION   DARGEY010000078 DARGEY010000000
VERSION     DARGEY010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6313
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.078"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..292)
                     /locus_tag="SF008_001318"
     CDS             complement(<1..292)
                     /locus_tag="SF008_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEG8233580.1"
                     /translation="MIYENDLIYIEKEEAQVPWLKIFTKEIYKEFSDCPLELQKELFE
                     KILLCEKAMIEFYKPEKINIASFANYVPRVHFHVMARFKEDAFFPECMWGKQQ"
     gene            400..1104
                     /locus_tag="SF008_001319"
     CDS             400..1104
                     /locus_tag="SF008_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233581.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANATKMEFEA
                     RAEAMKLKAEEAEEKEEENKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDFKNFVART
                     YQQNSQNNDIKFSIAS"
     gene            complement(1210..1985)
                     /locus_tag="SF008_001320"
                     /pseudo
     CDS             complement(1210..1985)
                     /locus_tag="SF008_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867793.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2191..3912)
                     /locus_tag="SF008_001321"
     CDS             complement(2191..3912)
                     /locus_tag="SF008_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HEG8233582.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNYIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     EPNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     TGVKFVDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSNIGEQYDPKTGKGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSKEKFLHGAMIYSVQLGTRPI
                     QSAPLPAGAPTWGAEFKKALNYNFTRAITVAGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVPYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
     gene            complement(3914..4642)
                     /locus_tag="SF008_001322"
     CDS             complement(3914..4642)
                     /locus_tag="SF008_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HEG8233583.1"
                     /translation="MQDNIIDRRSFFKLGLLGGSVVAASTIGGGAVLKAAELTHSHQA
                     SQGKSNKIRGRMFFQTQTEFDTLSAACERIYPKDEQGEGAIGLGVPYFIDNQLASAYG
                     YNDREYMQGPFMEGKAEQGYQTPMQRKDIFLEGVHALEENAQKRYKKSFSLLKGGDQD
                     KILSDFEKGKIQTTGFKSSYFFTLLRDMTVAGVLADPIYGGNDNKNGWRMMQYPGAQM
                     SYVDKIASDEFFNIEPMGLADMES"
     gene            complement(4778..5482)
                     /locus_tag="SF008_001323"
     CDS             complement(4778..5482)
                     /locus_tag="SF008_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HEG8233584.1"
                     /translation="MRIFLALFLFFNSLLALSELEEGLKLYEANKFDKAYEIFKSLCE
                     KDISKACFSLAFMYESAKGMSKDLNQAYKFYDKACKLGLASACSNMALLLQNQGYKNE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGESCYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            complement(5482..>6313)
                     /locus_tag="SF008_001324"
     CDS             complement(5482..>6313)
                     /locus_tag="SF008_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8233585.1"
                     /translation="NHQILEQLKSISERISSEIFASVKEKDAYFYKESKGFLKKDLYT
                     RYDYKAPYISSDDAFLAMFYNSDVMSKEFKKIKNELYKSFEEIKMKLKDFINILEREI
                     LLFKAEFSNIQKDHIFQSDKNFSELRAFCNASDEYFLKDFKELLFKSILELDLFFEKL
                     NLKAFTNYENATKLSLAFFSRKINESRVLYELDSSEFVLFYPKKSEIYERVLNELNVY
                     EFEALLINKPILTKIAKNFLEQSQILIQEKSKFLDLKKAELRKRRVQILNVRESIKED
                     "
BASE COUNT         2099 a         1159 c          825 g         2230 t
ORIGIN      
        1 tttgctgttt tccccacata cactctggaa aaaacgcatc ttctttaaat cttgccataa
       61 catgaaaatg cacccttggc acataatttg caaaagaggc gatattgatt ttttcaggtt
      121 tgtaaaattc tatcatagcc ttttcacaaa gtaaaatttt ttcaaaaagt tccttttgca
      181 actctaaagg acaatcgcta aattctttat aaatttcttt agtaaaaatt ttaagccaag
      241 gcacttgagc ctcctctttc tctatataaa tcaaatcatt ttcataaatc attacattcc
      301 tttgaaattg tatttatgat tattttacaa aatttatcaa atttttaagt caaaatgcgt
      361 taaaattcct aaaaatttaa aaaacaaaaa ggaggataaa tgcaaattag ttcaagttat
      421 aactcttatg attactactc tagcaaacct tcttttgata aaacaaatca atctgattcc
      481 actcaaaaag atgaaaaaaa tcttagtgaa aataaagatg ataaagaaaa aaatggcgaa
      541 caaacccaaa tggttaatgg cgtagagcta agccaaaaag aagtagctca agttcgcgaa
      601 ctccaaagta tcgatagaaa tgtaaaggct catgaagctg cgcatcaagc agcgggcggc
      661 ggcttagcag gtgctgcaag ttttacttat acaagaggcc ctgataatca aatgtatgct
      721 acagcgggtg aagttcctat cagcatgcaa aaaggaaaca caccagaaga aactatagcc
      781 aatgcaagac aaattgcagc agcagctatg gctcctgctg atcctagccc gcaagattat
      841 aaagttgcag caaatgctac aaaaatggaa tttgaagcaa gagctgaagc aatgaagctt
      901 aaagccgaag aagccgaaga aaaagaagaa gaaaataaag aaaaagatga caaaaattca
      961 gaaaatagcc tagaaaaaac agataaagat tcaaaaaaca acgataaaaa ttcaaatttt
     1021 gataaagact ttaaaaattt tgtcgctaga acttatcaac aaaactcaca aaataacgac
     1081 attaaattca gcatcgcatc ttaaaattct taatttaaat aaaaaatttc cttatgaaaa
     1141 cgatgacttg aatttgtatg ttaaaatatt taacattttt tcttttttat aatttaaatt
     1201 tttgcatttt caagctttta tatctataat ttttgccgaa gtgttttgag aaagaaattt
     1261 attaaattct cctgcactat catcactaaa tttcatacca aaaagaagtt ctaattcttc
     1321 acttttacca aatttatttt ctaataattt ttttaaaagc tcgtttttag cattgtcatc
     1381 tttgtaagtt tctttgtttt tgctttcgcc ttgaatggct ttgaagggtt tttcatctgg
     1441 gttttgacca ctttcattgc tttcttgggt agaatttgag ctttgttgtt tatttaaaaa
     1501 cctatctatc tcttcttgag taagtggttt aacatcaagt gcgtcaataa atcgtttttt
     1561 ctttcatctt tttcagcaac ccatattctt gcgaattcac ccacacttgt aagagttttt
     1621 agaagattgc ctttgcgtat tctggaaatc ttatctcctg gaataaattc aatattatca
     1681 atctcatatg ctccgttaag aatttcccat tcctcttcag ttaatttatc ttttcgcatt
     1741 cgctcaagca aggaattttc aacttcttta acatctgggt ctccattata gccgtatttg
     1801 ttcgcatatt ctttactaag catttctcca aagtattttt gcacaaaatc ttcccaataa
     1861 gcatcttctt cactttttgg ctcatctttt ttagtataag tatattcatt attttcatct
     1921 tttttaatgc ttaaagcatt atttggataa ttgatattag gatagtgaga attaaaattt
     1981 accatagaaa accctttttt tatgatattt tattaaaata atcttggatt ccaaccacca
     2041 agagcagact ccatttgcct ttttgtataa ttgtagctcg aataagaatt tataccatta
     2101 atcatttttg ccttccttga tattatacta tatcggaaga aaattaaaaa tttataatct
     2161 tgagagtttt caaaaactct caagttatta tcaagctaag ctttttccac ttttatgata
     2221 ttttaaaata ccttcagcac agcgataagc caaagctccc acagtatcag ttggattata
     2281 tccactattg tgttggaaat ttcctgctcc tacaacaaaa agattatccg catcccagtg
     2341 ttgtaaataa gtattaacca cactagtttc tctatctgca cccatggttg ttccacctgt
     2401 gttatgagta gattgataag gcacaacgct ataatcctta agataagcac cttttttgat
     2461 tgattttact ccttgcattc tttttgctac ctcagctgtt ttatctgtga taaatttatg
     2521 caaagctcta tcttgatcgg tgaaattata agttaagcgt aaaagtggca taccaaaagc
     2581 atctttataa gttggatcaa gacttaaata attattctta tgaggcaaag aagcaccttg
     2641 tcctgctacg gtaatagctc ttgtgaaatt atagtttaat gcttttttaa attcagcacc
     2701 ccaagttgga gctcctgctg gaagtggggc tgattgtata gggcgagttc caagctgaac
     2761 gctataaatc atagctccat gaaggaattt ttccttagaa tgatcaaaat tatctccgtt
     2821 aaaatcatca ctcgtagttc ctaaagcacc tgaacccatg aaggtgttaa attgctcatc
     2881 aaagaaagct gttgtaccca tgttcatttg ataacaataa tttctaccta aagttccttt
     2941 acctgttttt ggatcgtatt gctcacctat gttgcttacc attaaaagct tagcattgtt
     3001 aaacatataa cttgtaagta caactatatc agcaggctgg atatactctt tcatcgttct
     3061 agtatcgaca aattttaccc ccgttacttt tccgtctttt ttaagaattt gcgttacatt
     3121 actataagtg cgtatggtgt atttacctgt gctcatagcc tttggaatta ctgtgtttaa
     3181 aggacttgct tttgcaccat actcacaacc aaaacgctca caatacgcac agtattgaca
     3241 aggagctaaa tcttgaccat cagggtttgt atagccacct ttagaatttg aagctggcaa
     3301 acgataagtg tgtaaatttg aactttttgc tgcactttca aatcgtttaa gcattttagt
     3361 attttcaaga ggttcttgtg gataaggact ggatctaaaa gctcccattt tttccgctaa
     3421 aggatttggt tcacctgata ccccacaggt tttttcaaat ctatcataat aaggctccat
     3481 atccttataa gtcacgcccc aatcttgcaa ggtataatca ttacctaatt tattaccata
     3541 tctttgtttg cttagggttt gaatttcaaa gtcataaggc ataaacctaa aagtccaacc
     3601 attccaatgc acccctgcac cgccaacatt attacccaat aaaaacgaac ccattttacg
     3661 ataaggtaag gctaaaccac taggatcatg gcgaaaagtc acagtgtctt ttgagcaatc
     3721 ttgcatcaaa ccataattaa tcccatatct ccactcatca tggatataat taaaattttc
     3781 agtactttgc atatgtccgc gttctaaact aagtacattc aaacctgctt tagtaagctc
     3841 tgcagccact atacctccag tccatcctgc tccaactgtt actacatcta ctttttttaa
     3901 tacttcagcc attttaactc tccatatctg ctaaacccat aggttcaatg ttaaaaaatt
     3961 catcacttgc aattttatcc acatagctca tttgtgcgcc tggatattgc atcattctcc
     4021 aaccattttt attatcattt ccgccataaa ttggatcagc taaaactcca gctactgtca
     4081 tatctcttaa aagtgtgaaa aaataagaag atttaaaacc tgtagtttga atttttcctt
     4141 tttcaaaatc gcttaaaatt ttatcctgat ctccaccttt aagcaaagaa aaagattttt
     4201 tataacgctt ttgagcattt tcttcaagag catgcacgcc ttctaaaaaa atatctttgc
     4261 gttgcatagg agtttgatag ccttgttcgg ctttgccctc catgaaaggc ccttgcatat
     4321 attctctatc attataacca taagcactag ctagctgatt atcgataaaa taaggcacgc
     4381 ctaaacctat agctccttct ccttgctcat ctttaggata aattctttca caggctgcac
     4441 ttaaggtatc aaattcagtt tgagtttgaa aaaacattct acctctaatt ttatttgatt
     4501 ttccttgtga agcttgatgc gaatgcgtaa gttctgctgc ctttaaaaca gcaccgccac
     4561 ctatagtgct agctgctact acagaaccac ctagaagccc tagtttaaaa aagcttctgc
     4621 gatcaataat attgtcttgc attacttctc cttgataata atttaaacaa gattatatta
     4681 gtcctattaa tataaattta actttaaaaa gcgataaatt ttgtgttatt cttaatttta
     4741 tttaagaata tctttgaaag caatgaaaat agaactttta ataaagctct atatctttag
     4801 aattaagttc tttataagct gcacaagctt cttgatgttt ttgatcacaa gccataccaa
     4861 aatatctttt cgcctttgtt aaatcttgtt tttctagttg attatagcgt cctaacaaat
     4921 aacaagactc accaaaacct aaagtgcaag atttagaata aaaagcaaga gcagatttta
     4981 cacttgcttt aacaagctct cctttatcat ataaagaccc taattgataa caagctcttg
     5041 cattttttaa atcacaagat cttttataaa aacttgaggc catttgtcca tctttttctt
     5101 tttcataaaa taaagctata ttattacaac ttaacgattc tcctaaagta caagctttat
     5161 taaaagccaa aagagcttca tttttataac cttgattttg caaaagcaaa gccatattag
     5221 aacacgcact tgctaaacct aatttgcaag ctttatcata aaatttataa gcttgattta
     5281 aatccttact cataccctta gcactttcgt acataaaagc taaagaaaaa caagctttag
     5341 aaatatcttt ttcacaaagg cttttaaaaa tttcataagc tttatcaaat ttatttgctt
     5401 cataaagttt taaaccttct tctaattcac ttaatgcaag taatgaatta aaaaataaaa
     5461 ataaagctaa aaatattctc atcaatcttc ctttatactt tctctaacat ttaaaatctg
     5521 tactcttctt tttcgaagtt ctgctttttt aagatctaaa aatttacttt tttcttggat
     5581 taaaatttga ctttgttcta aaaaattttt tgcaattttt gtcaaaatag gtttattaat
     5641 aagcaaagct tcaaactcat aaacatttaa ttcatttaaa actctttcat aaatttcact
     5701 ttttttagga taaaaaagta caaattcaga actatcaagc tcataaagaa cacggctttc
     5761 attgatttta cgactaaaaa atgcaaggct tagttttgta gcattttcat aatttgtaaa
     5821 agccttaaga tttaattttt caaaaaataa atcaagttct aaaatacttt taaataaaag
     5881 ctctttaaaa tctttcaaaa agtactcatc acttgcattg caaaaagctc ttaattcact
     5941 aaaattttta tcactttgga aaatatgatc tttttgtatg tttgaaaatt ctgctttaaa
     6001 aagtaaaatt tctctctcga gtatgtttat aaagtctttt aatttcatct tgatttcttc
     6061 aaaagattta taaagttcat ttttgatttt tttaaactct ttactcatta catcactatt
     6121 gtaaaacatc gccaaaaaag catcgtcact tgaaatataa ggtgctttat aatcatatct
     6181 tgtgtataaa tctttcttta aaaatccttt gctttctttg taaaaataag catctttttc
     6241 cttaacactt gcaaaaattt cactagaaat tctttcgcta atgcttttaa gctgttctaa
     6301 aatctgatga ttt
//
LOCUS       DARGEY010000079         6290 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.079, whole genome shotgun sequence.
ACCESSION   DARGEY010000079 DARGEY010000000
VERSION     DARGEY010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6290
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.079"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(10..1688)
                     /locus_tag="SF008_001325"
                     /pseudo
     CDS             complement(10..1688)
                     /locus_tag="SF008_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893445.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            complement(1698..2735)
                     /locus_tag="SF008_001326"
                     /pseudo
     CDS             complement(1698..2735)
                     /locus_tag="SF008_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895311.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2740..4335)
                     /locus_tag="SF008_001327"
                     /pseudo
     CDS             complement(2740..4335)
                     /locus_tag="SF008_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873680.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
     gene            complement(4347..6275)
                     /locus_tag="SF008_001328"
     CDS             complement(4347..6275)
                     /locus_tag="SF008_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233586.1"
                     /translation="MGVENIYTLPLNGAPYISGSVAFDGEAKDNKLILESNTKIDLHN
                     SQYFSDEEGKDIYDERITRLMGAFGINSNLQNNKVLIDSANIVLHGPDGEYTARSTFE
                     ILGALADVNNLKKYNVSKNSVIIKNLNLDLMVNSQNKITFYDAVLFGEIYGGRTLQGN
                     AEKNSIEVYHFNSLDHLDKNIKTHASLNLYGGYSNDGEANGNKIVFRLKKPLKISDNF
                     YGKNYYNLYGGFATEGANFNIIDIQNDLTYEKVPQNYSDKFTVYAARTLSGKANNNTL
                     SIKDSVISLPLYAFITSETTLDGIDYIADESNNNEVNFENIKSSKNLSLMINTKNVSN
                     NKINYNLIQSLTEASSLGKGSKIILKATQNANNNLIKLKDCSSAAVESSCIIKADKES
                     AFNKIIINNTVFSTASDKRQGYVGLIAGVSANSHDNIMELVNLNIDEYKNQDAIFLAP
                     SGTSDISNFKSYNNTLYLGGELNFFKDVNIDLLSGSVFHEVNKKGKIITQILPHQEDF
                     SKNNRLIIDTQDVKSEVVNNFENFTFILPNKIKNPILTIEKLINLPSNGSMEILTKNK
                     PTKGKYILIQSDVGIYDGDNRLLNQQELENLLEKMKNNKNKFNYNKIEKLAKSTLKNV
                     NFSFEVSDDAKIIYINIL"
BASE COUNT         1987 a         1117 c          729 g         2457 t
ORIGIN      
        1 accccaaagt taaaagtatt ttcctaggct tgcataaact cttgctcgat gttctccatc
       61 gtgtttaagc cgataaacag ctcttgcagc atccattttt acataaaaat tagcacttct
      121 tgtatagagt atttgtatac ccattgcatc cataagataa tgattttcac tttgatattt
      181 tttattttca taccaagaat accctatatc ataaaaagga gtcgagtaaa gcccttctaa
      241 aggtgtttga aatcttattc ccaaggtgcc agaaacaaca ttatccgcac ttccctcacc
      301 ttccaaacaa acacatacac cacaaggtct acctaaagat acggattcac tactatctaa
      361 aacagtatcg ctgataactt tttgataatt gagttgaaaa atgtgagtta agcgttctta
      421 gaattgatat ttgttgctta aatttaaatt catttttcca aaatttccta aatttactcc
      481 attaaatcca gaaaaatcac catcattttc aacattacca tatataaaat ttaaagtata
      541 acttaggaca ttattctcca aacctctata agttctttct atgcccaaat ttacactatt
      601 tctcgctttt tcattgctta ctaaaccatc aagataataa tctttaatct ttttatgagt
      661 aaaacccgaa acaagatata aagaatactc agtatataaa aacacaggat aagaaaaatt
      721 tactccaaca ttcatagagt ccctataaaa actaagattt ctataaattc tgccaggaat
      781 ataatgtcct tgagttgcaa atggagtaat ttttaaattc cctataaaag tactataatt
      841 aatcccataa tctgtttgat ttttatcact atcttgaaga taaaaattta agttatcccc
      901 ttatcttgct atattgttta aactttgact cattcctgct ctaaaacgac ctgtttcttt
      961 agtcccatag ttgttagaat ataaagttaa agttgcacta tctcaccttt ctttacttct
     1021 ataataacat cactttctcc acaaccatca cctgattgta aattagcatt ggtttggatt
     1081 ccgtatattt cattgatttt ataaatttca ttttccacat ttttagttgt gataactttc
     1141 cctttaagat ttttgttcaa tttactctct aaagcataat ctctgacacc tgagttgttt
     1201 ttaatgatta cttttcctaa aagttccaaa agctatgtta atttgcactt tgttagaact
     1261 taaatcttgc ggtggtatat aagcagttgc cgaaggatga ctacttaatt gacaataata
     1321 agctataatg tttgttatat cttttaaatt ttgtaagctt aattcttggt tgcgatattc
     1381 agctattgca tcttgaattt atttttcgct aattcttaat tttttaaatg tcaaatcttt
     1441 attatcgata tgcaaaacat actctcttac aaaaacctta gcttcatttt gatcagtttg
     1501 taaatttgca atatttgtag tattttgctc tttaaaattt acagggcttt tttgattttt
     1561 taatgtattt tttaattttt attttgtggt ccatttgctt cagaagagct ttctataagc
     1621 tctcttattt tattattatt tagctcttca gcatgtgaaa atacttgcaa taagattaaa
     1681 tttctcattt ttatttccta ttttacattt acacaaatgt tcattgtctt aaaattatca
     1741 cttacaatac aacgcaaacc actacttcta gcatctgctt ttcctatgtc cacttgatca
     1801 tcatcttctt tttttgtgtc tactttagtt tgaattttta taggagcttc tacaaccttt
     1861 tcaggaattt caggcggcaa tacagaaggt ttgtctggat cttcaccccc tccctctttt
     1921 tttgtttatc tggctcatag atagatatat ttgatttttc tggcaatgag gctaattttc
     1981 cttcaaaatt atattttcca gtgtacactt taccatctac atcgcttcca tttatagcaa
     2041 aaccttgaga atttagaatc tcattttcaa gcttatagtg aaatccttca tttccactaa
     2101 gatccgcaaa ctgcttttca agagcttctt tttgttctaa aagttttgca tacataactc
     2161 taagcgtttc atcgctaact aagcctgatt ctttgatttt ttcatagttt ttattttctt
     2221 tgtcaagttg agctaaggct tcttggtatt tttgtaattc ttctttaaaa ctagcgaaac
     2281 aacctttgcc ggttttgatt ttatccatag cagttttctt ttgcgtccat ttttcataaa
     2341 gattggtata atttttataa ctttgttctt gcgaaccttg ccataacttt aaaaattctt
     2401 gttctactcc agtatcttta aatgtattta agaaatttaa actttgagtg atctcactgg
     2461 cttcattttc ccctgccaca cccttgctat ctgcgtaaat ccaagttttg gtatcaaaac
     2521 cataagtgta ttttccattc atcaaatcat ctaaaattct ttgaagcaat ttagggtcaa
     2581 agtcgtcttt ggataatttc acagcatctg ttaccttggt aaaagaatca gcaaaagcat
     2641 aagaattatt atcaagatat tttatatcgt taaatttctt tcttacagca ctatcaaaat
     2701 cttttttttc ctgttacttc actattatat tgcacagact taaaaaaaat tctgtccttc
     2761 atcaatgtaa ccattttcta aattatgata aacataaata ttactaaaat tattatttac
     2821 actaattcca ggatcaccaa taacttttcc agcttgtgtt ttataatttc cagcactcaa
     2881 aattgctcca tttttataaa ataagtaagc attattaatc tttaaatttc caacttttcc
     2941 agtaaatcct cctgttttac tatcattccc agaagttata agtttttcta tgtcattaac
     3001 cacaacatta ttaaaattac caccatcaat ttgtctgcct atgccaccca cataagaacc
     3061 ttcttttgtt actatactta tattattaat aacaacattt gtaaaattga tagtgttatt
     3121 ccctccacta ccatttcccc agcctattat tccgccaact ttagtattta cagctgtatt
     3181 aataacgaga tcattaacag tcacattttc aaaacccgta taactgtttg caatattttg
     3241 ccctactata cctccaacat aagcatcata accagttgaa gcaattttca atccttgaat
     3301 attaaggttt cttatatagc tattttgaac aactccaaaa attcctacat attgatttga
     3361 tgaattaata ttaacatttt ttaaagcata accagaacca tcgaaagatt tagcaaaagc
     3421 attgcttgta ttatcaccta ctatgtatgt tttcacgcca ctaaaatcaa tatcatcaat
     3481 caaacgaaaa tgatcaaaag ctgttctaaa tttttcttta tttacattcc aaaaatcagc
     3541 aaatttattc cattctgttg gatccgcaat acttccatat ttagtccagt ttttaacttt
     3601 actactatca tcaaaactaa atttactact agaattaccc aataaagctc cattttcttc
     3661 aaaacttgtt atgctttgtt gaatgatagc ttcttgctct gctttggcta cgatattttt
     3721 tgtatctttt accactccag catcaacata aactttgtta ccttcaagtt ttaatacatc
     3781 caaagtaatt tttcctttat tgatttcaac cttatttcct attaaaacaa tattatctgc
     3841 attgatcttt ccaagattta taatatttcc ttgcttgctt acatcaaata ctggagaaaa
     3901 attcatccct tgagaaataa aattttggac atctgaatct tttaaaggtg ttgtgctagc
     3961 tacaaatttt cccgcagtga tagttcctgt tttgccaatc aaaactccca tgggattaac
     4021 taaaaagatg ttattggtgc cgccatctag ttttccatct atcttagaag catctttttg
     4081 ataagcaatg tttaggtagt tttattgatt tccgttaaat tttacagttt cattttgtcc
     4141 tatattaaaa ccaccacccc attgaataac agagttttta ttgtttccta tgacattcat
     4201 cgtgccattg cttgaactta tacttcctgt tgaaccatga gtgaatttac ctccttgtgg
     4261 caaagcataa gcttgagaaa agagcaaaga actcaccgca aatgataaaa ctatatgttt
     4321 actcatcttt ttcatgttac tctcctttaa agtatgttga tataaattat ttttgcatca
     4381 tctgaaactt caaagctaaa atttacattt ttcaatgtac ttttagccaa cttttctatc
     4441 ttgttgtaat taaatttatt tttattattt ttcatttttt ctaacaaatt ttctaattct
     4501 tgttgattta acaatctatt gtcaccatca taaattccaa catcactttg tatgagaata
     4561 tattttcctt ttgttggttt atttttagta agaatttcca tacttccatt tgaaggaaga
     4621 tttataagtt tttctatagt caagatagga ttttttattt tatttggtaa aataaaagta
     4681 aaattttcaa agttatttac cacttctgat ttgacatctt gagtatctat aatcaaacga
     4741 ttatttttag aaaaatcttc ttgatgcggt agaatttgag tgattatttt gcctttttta
     4801 tttacttcat gaaaaacaga accagaaagc aaatcgatat ttacatcttt aaagaaattt
     4861 aactctccac ctaaatataa agtattgtta taagatttaa aatttgaaat atccgaagtt
     4921 ccagatggag ctaaaaatat agcatcttga tttttatact catctatatt taaattaaca
     4981 agctccatga tattatcatg agaatttgca gacactccag ctatcaaccc cacataacct
     5041 tgtcttttat ctgaggcagt actaaaaact gtgttgttga tgatgatttt attaaaagca
     5101 ctttctttgt ctgcttttat gatgcacgaa ctttccacgg cagccgaaga acaatcttta
     5161 agctttataa gattgttgtt tgcattttga gttgctttta aaataatttt tgagcccttt
     5221 cctaaagaac tcgcttcggt taaactctga atgagattat aatttatttt attatttgaa
     5281 acatttttag tattgatcat caaacttaaa tttttagatg atttaatatt ttcaaaattt
     5341 acttcattat tgtttgattc atcagcgata tagtctatac catctagcgt agtttcactt
     5401 gtaataaaag catataaagg caatgaaata acagaatctt ttatacttaa ggtattatta
     5461 tttgcttttc cacttaaagt tctagctgca tatacagtaa atttatcaga ataattttgt
     5521 ggaacttttt cataggttaa atcattttgt atatcaataa tattaaaatt cgcaccctcc
     5581 gtagcaaaac ctccgtaaag attgtaataa ttttttccat aaaaattatc actgattttt
     5641 aaaggttttt taagacgaaa tacaatttta tttccattag cttcaccatc gttagaatac
     5701 ccaccataga ggtttaacga tgcatgtgtt ttaatgtttt tatcaagatg atctaatgag
     5761 ttaaaatgat aaacttctat agaatttttc tctgcattac cctgtaatgt tcttccgcca
     5821 taaatttctc caaataaaac agcatcataa aaagttattt tattttgcga atttaccatt
     5881 aaatctaaat ttaaattttt aattattacg gaatttttac ttacattgta ttttttaaga
     5941 ttatttacat cagctaaagc acctaaaatt tcaaaggtcg aacgagctgt atactcacca
     6001 tctggcccat gaaggacgat attggctgaa tcgataagaa ctttattgtt ttgtaaatta
     6061 gaatttatgc caaaagctcc cattaaacga gtaattcttt catcataaat atccttacct
     6121 tcttcatctg aaaaatactg ggaattatga aggtcaattt ttgtatttga ctctaagatt
     6181 aatttattgt ctttagcttc accatcaaaa gctacagatc ctgaaatata aggagctcca
     6241 tttaagggca aggtgtagat attttctaca cccattatta atataggagt
//
LOCUS       DARGEY010000080         6175 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.080, whole genome shotgun sequence.
ACCESSION   DARGEY010000080 DARGEY010000000
VERSION     DARGEY010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6175)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6175)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6175
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.080"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            11..3943
                     /locus_tag="SF008_001329"
     CDS             11..3943
                     /locus_tag="SF008_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233587.1"
                     /translation="MFISSKTELIQTIKNLTINNKEVKQIDFIYPNFSILHAILKNID
                     FHQRKMLSKNQILAMQILEILKQTCDNHNNIEINIHTLNELDAGQNVNLKDLSSSEIC
                     TKVYLEDLEEEIQDKKQGKDFNLFYHTDKNNLCIEFINTLKELAKDSEDITTLDELIE
                     NIDPDDISSEKFDDFKKKVLEKIGNVMESDFFKNSISPTLKNTYEKFINELLEHIKKL
                     AEEKEYEKIKIILSAIAGVAIATVVAVLTGGAGLAILAAGLFSLMGSASEYYEFAQRD
                     YGTLLTPLAAFLATRCAMFIHYINSRLLSCVLIINKKEIIDLSGFGLYLGSDESNIAS
                     NLAYKITLSEEIKSIENIFSEIFLNPEQKNKGYKNTPNDSKSSNLPAFISTQKLSNLY
                     LKNNAILKNLQEDIKQFIYFSYIESPNFNSSKLAEFFAQKNQNAQIDLNTTKMSKNYL
                     IISNIPNKYNAGLSESLTQEIANYNIQDKYRRIKKNIDTSKKTYDSTRDYSEYSIEMP
                     QDENEPYILQLSPFVKISKEAYENSKKAYEDMQKVYKYLTNFVATPQKLPEFAKTAKE
                     KLAISENEPIIEIVKKTENLRHCERINILAYIDYNKKINDKKWLPYFYIKKFFKQNEA
                     KESIIEKEKKIAHQYLTFLKKEFFEKSDKSSFGNYSLMECLFISFVLYQAKLIFPNIN
                     LDLKKYGGSNFVYIKYLDKTYVLWTDECPIYVNNEPTNITAYEVVSQLLKILDKKDYS
                     FVENDSSITIDDFFNELSKDLDTTNTLDKKIIKLKQMYYLDEQKCIKEFMNLDEETQR
                     AFVAWMDIEKQISDLSKLLEQMYGKEYLNKAKEQKTSEIFTYAMLKILLSASPFISFT
                     AQMLWDFNFLKTIEYVIQACIKINKEGFKEFFKEQLSIFAPPKKNSIYHIHIKSNLII
                     KARLQQIEKELIHTKIQMILAQEIKSNLIIQKNTSGLNLFITKIKEYFNEKQIKIYWS
                     DKYMKQLFIYSNQESNISKIALMHSIDIQTQKYTIYTYAKLNKLDLASIVTGEFVGIF
                     LNYLFPTNFKALQEQYESIVYQLYTFKDDSPLAVIRDHFITYPFAINSKFISFDLKKI
                     FYGIDLCTGVFDTHFSFHYEIDQKLEENKEFLLKRLLSYLIIDEKRNATALEDIKEQK
                     YIIDDYTFYFKELKSLELKKCTMYQLPCNHPLFKEFRNKEKQISAFKKDEDSPIHAYN
                     EALQILQDFANGIYNTSKDKTGRYIEDKNKTRRLLEKLNVIGQNNLKAMYMGINGNEE
                     SLKAIGKRENNTSKASANADITSETKTPPNFIGRLATTIIIEDGLYMG"
     gene            3962..5242
                     /locus_tag="SF008_001330"
     CDS             3962..5242
                     /locus_tag="SF008_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233588.1"
                     /translation="MSETYKIYTPNGIAVKVDKETNKIYFVESLDSHPPAKGNYTEEY
                     SKALFEAHNIKRNSPYKDYKPQYLDPEFYTGQSSTLLEFKEWQNIYLKDPIKGAIAPW
                     TKAEKAYYKSLKTKRERYKYLAIRSGLRSVVIDIPYEAIGAVDEKGNVINEEYAYIYD
                     EVSSHRGTLKSYSFFNEWELSALLLGNIKASPTAAVGFKARQQQALFLQAQLGDKNAF
                     KSLGLAVLCSNSFLTGQHWNKLRAKMIYDLHDHHYESLLDEFGMLPFLDEIIGVDWVI
                     DLNRYKFALDEEGRIIWALYDDIEKGKLKDPRDVDSTSESRKEFDHYMDGYVNGMETR
                     FDADIPNDWGDRQATLFKDTLVLSAKLAALTPPQGYPNAPRYYSPERLEIIYKRHKLD
                     KLLDPRIPAIYRYNFPQELRAKIRAYAKEHNIKE"
     gene            complement(5246..6145)
                     /locus_tag="SF008_001331"
     CDS             complement(5246..6145)
                     /locus_tag="SF008_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEG8233589.1"
                     /translation="MIEKEEIGIAIENYDECISGSKTFVFNTKGGTIGSGDDCTFRIQ
                     DKLEQIKNTHAIVSYEEGSFTIAAFEDSDIYYNKSFSRMPSGYEIIISIGDIFKIGNL
                     EFRFVDAKSIEASIKENKKYLEDIEKRNHFDEIEIKPRGKTSINFDKNKELKEILENN
                     DYKFIEEEKADDSFLKEIIQKNPNSLEYENVLKSLVKNLKDIKTKQQNSKLNNDYSSI
                     SIKDFESIINNIPLIKSTRLINILALSLIAKELYTPIFEEMEENIFIKYIEAAIQNNI
                     KEDKILFENLTIKALEKYIKDFE"
BASE COUNT         2443 a          809 c          864 g         2059 t
ORIGIN      
        1 ggaatctttt atgtttataa gttctaaaac agagttaatt caaactatta aaaatttaac
       61 aatcaacaat aaagaagtta aacagattga ttttatttat cctaattttt ctattttaca
      121 cgctatatta aaaaatattg attttcatca aagaaaaatg ctatctaaaa atcaaatatt
      181 ggctatgcaa atactagaaa ttttaaaaca aacttgtgat aatcacaata atatagaaat
      241 aaatatccat acccttaatg agcttgatgc tggacaaaat gtaaatttaa aagatttatc
      301 aagcagtgaa atttgcacta aagtttattt agaagactta gaagaagaaa ttcaagacaa
      361 gaaacaaggt aaagatttta atctttttta tcatacagat aaaaataatc tttgtatcga
      421 atttatcaat actttaaaag aactagccaa agattctgaa gatataacaa ccttagacga
      481 gttaatcgaa aacattgatc ctgatgatat aagcagtgag aaatttgatg attttaagaa
      541 aaaagtttta gaaaagattg gaaatgtcat ggaatcggat tttttcaaaa atagcataag
      601 tcccacttta aaaaatactt atgaaaaatt tatcaatgag ttgttagaac acattaaaaa
      661 acttgccgaa gaaaaagaat atgaaaaaat taaaatcata ctaagtgcta tagcgggtgt
      721 tgcaatagcc acagtggtag ctgttcttac aggtggggca ggattagcta ttttggctgc
      781 tggtttattt tctttaatgg gttctgcaag cgagtattat gaatttgctc aaagagatta
      841 tggcacactt ttaacgcctt tagccgcatt tttagccact agatgtgcta tgtttattca
      901 ttatattaat tctcgcttgt tatcttgtgt tttaattatt aataaaaaag aaattattga
      961 tttaagtggt tttggattat atcttggaag tgatgaaagc aatatcgctt cgaatttggc
     1021 ttataaaatc actttaagcg aagaaataaa aagcattgaa aatattttta gtgaaatctt
     1081 tttaaaccca gaacaaaaaa acaagggata taaaaataca cccaatgatt caaaatcgag
     1141 caatttaccc gctttcattt caacgcaaaa attatctaat ttgtatttaa aaaacaatgc
     1201 tattttaaag aatttgcaag aagatattaa acaatttatt tatttttcct atatagaaag
     1261 tccaaatttt aactcaagta aactagctga atttttcgca caaaaaaatc aaaatgcaca
     1321 aatagattta aatacaacta aaatgagtaa aaattatttg attatttcaa atatccccaa
     1381 taaatacaat gcaggactta gtgaaagttt aactcaagaa atcgccaact ataatataca
     1441 agataaatac agaagaatta aaaaaaatat tgatacttca aaaaaaactt atgacagcac
     1501 aagagattat agcgaatata gcatagaaat gccacaagat gaaaatgaac cttatatttt
     1561 acaattaagc ccttttgtga aaatatccaa agaagcttat gagaatagta aaaaagctta
     1621 tgaagatatg caaaaggttt ataaatattt aacaaatttt gttgctacac cgcagaagct
     1681 accagaattc gcaaaaacag ctaaagaaaa attagcaata tcagaaaatg agccaataat
     1741 agaaatagta aaaaagacgg aaaatttacg acattgcgaa cgaataaaca ttttagctta
     1801 tattgactac aataaaaaaa taaatgataa aaaatggctt ccttattttt atatcaaaaa
     1861 attctttaaa caaaacgaag ccaaagaatc catcatagaa aaagaaaaaa agatagctca
     1921 tcaatattta acttttttga aaaaagagtt ttttgaaaaa tcggataaat cttcatttgg
     1981 gaactattct ttaatggaat gtttattcat ttcatttgtc ttgtatcaag ctaagcttat
     2041 ttttccaaat atcaatttgg atttgaaaaa atatggaggc agtaattttg tatatataaa
     2101 atacttagat aaaacttatg ttttatggac agatgaatgt ccaatatatg taaataatga
     2161 gccaacaaat attacagcat atgaagttgt atcgcaatta ttaaaaatac ttgacaaaaa
     2221 agattattct tttgtggaaa atgatagttc gataactata gatgattttt ttaatgaatt
     2281 atcaaaagat ttagatacaa caaatacatt agataaaaaa ataatcaaat taaagcaaat
     2341 gtattattta gatgaacaaa aatgcattaa agaatttatg aatttagacg aagaaacgca
     2401 acgagctttt gttgcatgga tggatataga gaaacaaata tcagatttat caaagctttt
     2461 ggaacagatg tatggaaaag aatatttaaa taaggcaaaa gaacaaaaaa caagtgaaat
     2521 atttacttat gcaatgttaa aaattttatt aagcgctagt ccttttatca gctttacagc
     2581 tcaaatgttg tgggatttta attttttaaa aacaatagaa tatgttattc aagcttgtat
     2641 taaaataaac aaagaaggat ttaaagaatt ttttaaagaa cagcttagta tttttgcacc
     2701 tccaaaaaag aatagtatat atcatataca cataaaatct aatttaataa taaaagcacg
     2761 cttgcaacaa atagaaaaag aattaattca tactaaaatc caaatgattt tagcacaaga
     2821 gataaaatcc aatttaataa tacaaaaaaa tacatccggt ttaaatctat ttatcacaaa
     2881 gataaaagaa tactttaatg aaaaacaaat taagatttat tggagtgata aatatatgaa
     2941 gcaattattt atatactcta atcaagaaag caatatatct aaaattgctc ttatgcatag
     3001 catagatata caaactcaaa aatatactat ttatacttat gctaagctaa ataaacttga
     3061 ccttgcttct attgtgactg gagaatttgt gggtattttt ttaaattatc tctttccaac
     3121 aaattttaaa gccctacaag aacaatatga aagcattgtt tatcagcttt acacctttaa
     3181 agatgattct cctttagcag ttataagaga tcattttata acttatcctt ttgcaatcaa
     3241 ttcgaaattc attagctttg atttaaagaa aattttttat ggcatagatc tttgcacagg
     3301 agtttttgac actcattttt cctttcatta tgaaatagat caaaagcttg aagaaaataa
     3361 agaatttctt ttaaaaagac ttttgtctta tttgattatt gatgagaaaa gaaatgcaac
     3421 tgctttagag gatataaaag aacaaaaata tattatagat gattatactt tttattttaa
     3481 agagttaaaa tctttagaac ttaaaaaatg caccatgtat caacttcctt gtaatcatcc
     3541 tttgtttaaa gagtttagaa ataaagaaaa gcaaattagt gcttttaaaa aggatgaaga
     3601 tagtcctatt catgcttaca atgaagcttt acaaatttta caagattttg ctaatggaat
     3661 ttacaataca agcaaagata aaacaggaag atatatagaa gataaaaata aaaccagaag
     3721 attactagaa aaactcaatg ttataggaca aaacaatctt aaggctatgt atatggggat
     3781 aaatggaaat gaagaaagct tgaaagctat aggcaaaaga gaaaataaca ctagcaaagc
     3841 aagcgcaaat gctgatatca catcagaaac aaaaactcca cctaacttca taggcagatt
     3901 agctactact ataatcatag aagatggttt atatatggga taaattaaga aaggataaat
     3961 aatgagtgag acttataaaa tttatacacc taatggaata gctgtaaaag tagataaaga
     4021 aacaaacaaa atatattttg tagaaagttt agattcacat ccaccagcaa agggcaacta
     4081 taccgaagaa tattccaaag ctttgtttga agcacacaac attaaacgaa actcccccta
     4141 caaagactat aaaccccaat acctagatcc tgaattttat acagggcaaa gttctacttt
     4201 acttgaattt aaagaatggc aaaacattta tttaaaagat cctataaaag gagctatagc
     4261 tccttggact aaagcagaaa aagcttatta taaatcttta aaaactaaaa gagaaagata
     4321 taaatattta gcaataagaa gtggattaag atctgtggtt atagatatac cttatgaagc
     4381 tataggagct gtagatgaaa aaggaaatgt aatcaatgaa gaatacgcct atatttacga
     4441 tgaagtaagt tctcatcgtg gaacattaaa atcttattct ttctttaatg aatgggaatt
     4501 atctgcttta cttttgggaa atattaaagc tagtcctaca gctgctgtag gatttaaagc
     4561 aagacaacaa caagcattgt tcttacaagc tcaacttgga gataaaaatg cttttaaaag
     4621 tttaggttta gcagtattgt gttctaattc ttttcttaca gggcaacatt ggaataagct
     4681 tagagcaaaa atgatttatg atttacacga tcatcattat gagagtttat tagatgaatt
     4741 tggtatgctt ccttttttag atgagattat aggagtagat tgggtgattg atttaaatcg
     4801 atataaattt gctcttgatg aagaaggtag aatcatttgg gctttatatg atgatattga
     4861 aaaaggtaaa ttaaaagatc caagagatgt ggattctact tctgaaagca ggaaagaatt
     4921 tgatcattat atggatggat atgtaaatgg aatggaaact agattcgatg ctgatattcc
     4981 aaatgattgg ggtgatcgac aagccacttt attcaaagat actctagtat taagcgccaa
     5041 actcgcagcc ttaactcctc ctcaaggcta tcctaatgct ccaagatact atagccctga
     5101 aagactagaa attatttata aaagacataa gcttgataaa cttcttgacc caagaattcc
     5161 tgctatttat agatataatt ttccgcaaga acttcgagct aagataagag cttatgctaa
     5221 agagcataat atcaaagagt aaaaatcact caaaatcttt aatatacttt tccaatgctt
     5281 tgatggtaag attttcaaaa agaatcttat cttctttgat attgttttgt atggcagctt
     5341 caatatattt aataaatata ttttcttcca tttcttcaaa tattggagta tataattctt
     5401 ttgcgattag gctaagggct aaaatattga tcaatcttgt ggatttgatt aagggtatat
     5461 tattaataat actttcaaaa tctttgatac taatagaaga ataatcatta tttaatttag
     5521 agttttgttg ttttgtttta atatctttta aattttttac caaacttttt aaaacatttt
     5581 catattctaa tgaatttgga tttttttgaa ttatttcttt taaaaagcta tcatctgcct
     5641 tttcttcttc gataaattta taatcattat tttctaaaat ctcttttaac tctttgtttt
     5701 tgtcaaaatt tatacttgtt tttcctctag gtttaatttc aatttcatca aaatgattgc
     5761 gtttttcaat atcttctaag tattttttat tttctttaat gcttgcttca atgctttttg
     5821 catccacaaa tctaaattct aaattaccga ttttaaaaat atcgcctatg ctgattatta
     5881 tttcatagcc acttggcatt ctagaaaagg acttattata ataaatgtca gaatcttcaa
     5941 aagccgcaat tgtaaaagat ccttcttcat aagatactat ggcatgggta tttttgattt
     6001 gttctagttt atcttgaata cgaaaagtgc aatcatcacc gcttcctata gttccaccct
     6061 ttgtgttaaa tacaaatgtt ttagaaccac taatacattc gtcataattc tcaatagcaa
     6121 ttcctatctc ttctttttct atcattgttt atttacccct gtaatatttt ctact
//
LOCUS       DARGEY010000081         6101 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.081, whole genome shotgun sequence.
ACCESSION   DARGEY010000081 DARGEY010000000
VERSION     DARGEY010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6101)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6101)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6101
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.081"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            8..916
                     /locus_tag="SF008_001332"
     CDS             8..916
                     /locus_tag="SF008_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HEG8233590.1"
                     /translation="MGILKGTLPALLTPYKDDGSINEKEFIRYCEFGISKGLNGLFCN
                     GSAGDSQALSVEEQVKLMKLTKKATKNNIPIITGITSTIYENTFILAQKAYELGLDAL
                     LLAMPYYYKLSEDALFEYVKYLASEVKLPLYVYNIPLFAPALSLKFIEKVSKLDNVVG
                     IKDSSGDALLLNHILDVVPSNFDVFVGREEFYVGALLAGAKGSMTSIGGVFPELMSEI
                     YKSINEKNIGRALLIQKSLLKAIRFGMSIAFPMGFALLLKARGFEFVNASIHPLSPAT
                     KEELNTRFDEAKELIKTIEKETGIKL"
     gene            913..1176
                     /locus_tag="SF008_001333"
     CDS             913..1176
                     /locus_tag="SF008_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEG8233591.1"
                     /translation="MKGYIIVNEKDNVATALRDFKKGEKVANIELLNDIASGHKFALK
                     DIKKDEIIIKYAEAIASASCDISTGEWVHIHNTAGIRGRGDKE"
     gene            1179..2345
                     /locus_tag="SF008_001334"
     CDS             1179..2345
                     /locus_tag="SF008_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEG8233592.1"
                     /translation="MKKIMGYRREDGKFGLRNKVIIIPSVHCANKVCENIARKCNGAV
                     YINHQHGCSQLEFDALQTRDVLIGHGSNANVFGVLIIGLGCEVIQAKAVAEKIKEATP
                     YKKVEYLVIQECGGSKNTIENGIKIVNEMLESAAKLQKSEGDFSDLILGTECGGSDSY
                     SGLSANPALGSLSDFVIDEGGAVILAETTELIGCEAILAKRAKNDEIAKKVYDKILAY
                     ENLVKSFHADIRGANPSPGNMAGGLSTIEEKSLGCVYKAGTKTLMDVIDYAKPVVSKG
                     LTFMNTPGNDIEQLSAMVAGGANICVFTTGRGTPTGSAIVPTIKMSSNTFCYENMNDA
                     IDINAGSIIDGVKTKEEVRDELIELIVRISDGELVKAELNEQNDFSVWRLATTC"
     gene            2357..3643
                     /locus_tag="SF008_001335"
     CDS             2357..3643
                     /locus_tag="SF008_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004314306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8233593.1"
                     /translation="MKHANSIKLELVCKKISWRILPLIVLMFCLSMLDRTNISFVKSH
                     IEIDAGIGEAAYALGAGIFFIGYAIFEVPSNLFLHKLGAKIWLSRIMITWGLVTMAMI
                     FIQGEISFYVLRFLLGLTEAGFSPGIILYLSYFFPAIYRSKAYGIYQMGVPIAFVFGS
                     LISGFILDYTPNIYFKNWQWMFLIEGGITVLVGIFCLFYLDSHPKDAKWLDIKEKDIL
                     LKHIEISNTKAKDYSIKDIFKSILVWKFVFVYFCIQLSVYGVLFYLPSKIAQILQINV
                     GFEVGLLNAIPWIFVFIALPIFTSLADKKHSWNLHAILFLLLASLSMIASTFVTNLAA
                     FLFFISLAAIGFIVIQPIFWNLPTQVLKGKGAAAAIALIGSLGNLGGFVAPTLKTYIE
                     NHFGVEFGLIVLALIAILGVLVLIHLKITLNLDKGE"
     gene            3644..4432
                     /locus_tag="SF008_001336"
     CDS             3644..4432
                     /locus_tag="SF008_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEG8233594.1"
                     /translation="MDLKIKNKVCIITGGAKGIGYGIAKLWASEGGIPVIFSRSMPKE
                     HDKELKKLSSEYEFYEIDLKNYEQIEKLVKKVAIKHGGIYALVNNAGTNDNLHIENTS
                     TQDLIKSYENNLFHYYTMTKECLPYIKKEQGSILNIVSKTGITGQGRTSAYASAKAAQ
                     MGFTREWACAFAKDNVRVNAIAPAEVMTPLYEKWLQNFPNPKEQYEKIAKAIPLGHRF
                     TTIEEIANTAVFTLSPLASHTTGQILMPDGGYVHLDRALNWDEN"
     gene            4443..5699
                     /gene="fucP"
                     /locus_tag="SF008_001337"
     CDS             4443..5699
                     /gene="fucP"
                     /locus_tag="SF008_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HEG8233595.1"
                     /translation="MTDSKNIKIAIVLVTSLFFLWGVSYGLIDVMNKNFQNHLHISQH
                     ESGFLQFAYFGAYFIIALPAGYIANRFSYKMGIIFGLALYAIGALLIIPATNLASFHL
                     FLFAFFILACGIGSLETSANPYMTKLGDEKNASFRINAAQSFNGLGQFVGPIIGGALF
                     LSITKQEEGASKEQIEAALVANMGNVQLVYIGIAVIVILILIAFVANKLPEGSAVSDD
                     YKQKDDSKPIYVFKHRHFNLGLLAQFLYIANQVAAGAFFINYVVEHNEGLKDAQGAYY
                     FSIALVAFMLGRIVSTPLMKIIKGEKILGFYSLINVLICLSLYFVSGFFSIVLLIALF
                     FFMSISFPTIFAVATKNLPLNQVKLGGSLLVMSIVGGAIMPIIIGFINDHYGTGTGYL
                     AIAPLFLYVAWYGFIGSKVRKNAKDF"
     gene            5683..>6101
                     /locus_tag="SF008_001338"
     CDS             5683..>6101
                     /locus_tag="SF008_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG8233596.1"
                     /translation="MQKIFDAHLHLWDLGKIPISWMKDDEKLEQNYDFFRMKQEYKEF
                     EFIGAMYVEVNSDDLEKEILFALEQKKLHNLLLCLADLKHKEKLNSFREVMHVSKKGA
                     KRLFEVDFEEKIEILKTFNIPFEACMKNEELSFLENF"
BASE COUNT         2047 a          733 c         1215 g         2106 t
ORIGIN      
        1 gaaaaaaatg ggaattttaa aaggaacttt accggcttta cttactccat ataaagatga
       61 tggaagtatc aatgaaaaag aatttattcg ctattgtgaa tttggtattt ctaaaggctt
      121 gaacggattg ttttgtaatg gaagtgcagg ggattctcaa gctttgagcg tggaagagca
      181 agttaagtta atgaaactca ccaaaaaggc tacaaaaaat aatataccta tcatcacggg
      241 tattacctcg acaatttatg aaaacacttt tattttggcg caaaaagctt atgaattagg
      301 tcttgatgcc ttattacttg ctatgcctta ttattataaa ttgagtgaag atgcactttt
      361 tgaatatgta aaatatttag cttctgaagt gaaacttccc ttatatgttt ataatatacc
      421 tctttttgca ccagcactaa gcttaaaatt tatagaaaag gtttcaaagc ttgataatgt
      481 tgtgggtata aaagatagta gcggagatgc tttgctttta aatcatattt tagatgtagt
      541 acctagtaat tttgatgttt ttgtaggaag agaagaattt tatgtaggtg cattattagc
      601 aggtgcaaaa ggttctatga ctagcatagg tggagttttt ccagaactta tgagcgaaat
      661 ttacaaatca atcaatgaaa aaaatatagg cagagctttg ctaatacaaa aaagtttatt
      721 aaaggccata agatttggta tgagcatagc ttttcctatg ggttttgctt tgcttttaaa
      781 ggccagagga tttgaatttg taaatgctag tattcatcct ttatcacctg ctacaaaaga
      841 agaattaaac actcgctttg atgaagcaaa agagcttatt aaaactatag aaaaagaaac
      901 aggtataaaa ctatgaaagg atatattata gtcaatgaaa aagacaatgt tgccacagct
      961 ttgcgtgact ttaaaaaagg cgaaaaagtg gcaaatattg agcttttaaa tgatattgca
     1021 agcggacata aatttgcact aaaggatata aaaaaagatg aaattattat caaatacgca
     1081 gaagctatag ctagtgcaag ttgcgatatt agtacagggg aatgggtgca tatccataat
     1141 actgcgggaa ttagaggtcg tggagataag gaatgaaaat gaaaaagata atgggttata
     1201 gaagggaaga tggaaaattt ggcttaagaa ataaagtcat tatcatacca agtgtacatt
     1261 gtgctaataa agtgtgtgaa aatatagcta gaaaatgtaa tggagcagtt tatatcaacc
     1321 atcagcatgg ttgctcccag cttgaatttg atgctttaca aactagagat gttttaatag
     1381 gtcatgggag caatgccaat gtttttggtg ttttaattat agggcttggt tgtgaggtaa
     1441 tacaagccaa agcagtagca gaaaaaatca aagaagcaac gccttataaa aaggttgaat
     1501 atttagtgat acaagaatgt ggtggtagta aaaataccat tgaaaatggt atcaaaatag
     1561 tcaatgaaat gcttgaaagt gctgcaaaat tacaaaaaag tgaaggagat ttcagtgatt
     1621 tgattttagg cacagaatgc ggtggaagtg atagctatag cggacttagt gctaatcctg
     1681 ctttaggaag tttgagtgat tttgtaatcg atgagggtgg tgcggtaatt ttagcagaaa
     1741 ctacagaact tataggttgt gaagccatac tagctaagag agcaaaaaac gatgaaatag
     1801 ctaaaaaggt atatgataag attttagctt atgagaattt agtcaaatct tttcatgctg
     1861 atattcgagg agcaaatcct agcccaggaa atatggcagg cgggcttagt actatagagg
     1921 aaaaatcttt aggctgtgtt tataaggcag gaactaaaac cttaatggat gtgattgatt
     1981 atgctaagcc tgtagtttct aaaggtttaa cttttatgaa tacaccaggc aatgatatag
     2041 aacaacttag tgctatggtt gcaggtggag caaatatttg tgtttttact acaggtcgtg
     2101 gcactccaac gggttctgct atcgtgccta ctatcaaaat gagttctaat actttttgtt
     2161 atgaaaatat gaatgatgct attgatatta acgcaggaag cattatagat ggggtaaaaa
     2221 caaaagaaga agtgcgtgat gagcttatag aattaatcgt gcgaatttca gatggagaat
     2281 tggtaaaagc cgagcttaac gagcaaaatg atttttcagt ttggagactt gctacaactt
     2341 gttaaagggt aaagtgatga aacatgcaaa ttcaataaag ttagagttag tatgtaaaaa
     2401 aatatcttgg cgtattttgc ctttgattgt tttgatgttt tgtctttcta tgcttgatag
     2461 gacaaatatt agctttgtga aatctcatat agaaattgat gcaggcatcg gtgaggctgc
     2521 ttatgctttg ggtgctggaa tattttttat aggttatgcc atttttgaag tgccttcaaa
     2581 tttatttttg cataaattag gagcaaaaat ttggttaagt cgcataatga tcacttgggg
     2641 acttgtaact atggcaatga tttttataca aggagaaata agtttttatg tattaagatt
     2701 tttattgggt ttaactgaag caggttttag tccaggcatt attttatacc ttagttattt
     2761 tttcccagct atatatcgat caaaagctta tggaatttat caaatgggag ttccaattgc
     2821 ttttgttttt ggttctttaa ttagcggttt tatacttgat tatacaccaa atatatattt
     2881 taaaaattgg caatggatgt ttttaataga aggaggtatt accgttttag taggtatttt
     2941 ttgtttattt tatcttgatt cacatccaaa agatgcaaaa tggttagata taaaagaaaa
     3001 agatattttg ctaaaacata ttgaaatttc caatactaaa gctaaggatt attctataaa
     3061 agatattttt aaaagtattt tggtgtggaa atttgtattt gtttattttt gtattcaatt
     3121 aagtgtttat ggagtgcttt tttatttacc aagtaaaatt gcccaaatat tgcaaataaa
     3181 tgtaggtttt gaagttggac ttttaaatgc cataccttgg atttttgttt ttatcgcctt
     3241 gccaatattt acctcattgg ctgataaaaa acattcttgg aatttacatg cgattttatt
     3301 tttactgcta gcaagtttga gcatgatagc ttcaactttt gttacaaatt tggcggcatt
     3361 tttatttttt attagcttgg ctgctatagg ttttatagtc attcagccta tattttggaa
     3421 tttgccaact caagttttaa aaggaaaagg agccgcggct gctattgctc ttataggatc
     3481 cttgggaaat ttaggaggtt ttgtagctcc tactttaaaa acatatatag aaaatcattt
     3541 tggagttgag tttggactta tagtgttagc attgatagca attttaggtg tattggtatt
     3601 aatacattta aaaataactt taaatttaga taaaggagaa taaatggatt taaaaattaa
     3661 aaataaggtt tgtattatta caggaggggc taaaggtatt gggtatggta ttgctaaatt
     3721 atgggcaagc gaaggcggaa ttcctgtaat tttttcaaga tctatgccta aagagcacga
     3781 taaagaatta aaaaaattat ctagtgagta tgaattttat gaaattgatt taaaaaatta
     3841 tgagcaaatt gaaaagcttg taaaaaaagt tgctatcaaa catggtggaa tctatgctct
     3901 tgtaaataat gcaggtacaa atgataattt acatattgaa aatacaagta ctcaagattt
     3961 gataaaatct tatgaaaata atctttttca ttattatact atgaccaaag aatgtttgcc
     4021 ttacattaaa aaagaacaag gcagtatttt aaatatagtg agtaaaacag gcatcacagg
     4081 acaaggaaga acttcagctt atgcttcggc caaagcggct caaatgggtt ttactagaga
     4141 atgggcttgt gcttttgcta aggataatgt tagggtaaat gctatagctc ctgctgaagt
     4201 tatgactcct ctttatgaaa aatggctgca aaattttcct aatcctaaag agcaatatga
     4261 aaaaatcgca aaagctatac ctttaggcca tcgttttact accatagagg aaattgcaaa
     4321 tacagcggtt tttacactta gtccccttgc ttcacatact acagggcaaa ttttaatgcc
     4381 agatggaggt tatgtgcatt tagatagagc attaaattgg gatgaaaact aaggagtaaa
     4441 aaatgactga ttctaaaaat ataaaaatag ctattgtttt ggtaacttct cttttctttt
     4501 tatggggagt aagctatgga cttattgatg tgatgaataa aaattttcaa aatcatcttc
     4561 atattagcca gcatgaaagt ggttttttac agtttgctta ttttggtgct tattttatca
     4621 tagccttacc cgcaggttat atagccaata gattttctta taaaatggga atcatttttg
     4681 gcttagctct ttatgccata ggagctttgc ttattatacc tgctacaaat ttggcttctt
     4741 ttcatttgtt tttgtttgcg ttttttattt tagcttgtgg tattggttct ttagaaacta
     4801 gtgcaaatcc ctacatgaca aagcttggtg atgaaaaaaa tgcgagtttt agaatcaatg
     4861 ctgcgcaaag ttttaatggt ttggggcaat ttgtaggacc tattataggc ggagctttat
     4921 ttttatctat tactaaacaa gaagagggtg cgagtaaaga gcaaatcgag gctgcattgg
     4981 tagctaatat gggaaatgtc cagcttgttt atataggaat tgctgtcatt gttattttga
     5041 ttttaattgc ttttgttgca aataagcttc cagaaggaag tgcggtaagt gatgattata
     5101 agcaaaaaga tgattctaag cccatatatg tttttaaaca cagacatttt aacttagggc
     5161 ttttagcaca gtttttgtat atagccaatc aagttgcagc aggagctttt tttatcaatt
     5221 atgttgtgga acataatgaa ggtttaaaag atgcgcaagg tgcttattat ttttctatag
     5281 ctttggttgc atttatgtta ggacgcattg tttctactcc tttgatgaag ataatcaaag
     5341 gtgaaaaaat tttaggattt tattctctaa tcaatgtgct tatatgtctt agtttatatt
     5401 ttgttagcgg gttttttagc atagtgcttt taatagcttt atttttcttt atgtctattt
     5461 cttttcctac tatttttgcg gtagcaacaa aaaatttacc tttaaatcaa gtaaaactag
     5521 gcggatcttt gcttgtgatg agtatagtag gtggagcgat tatgcctata attataggct
     5581 ttattaatga tcattatggt acaggcactg ggtatttagc aatcgcacct ttgtttttat
     5641 atgtggcttg gtatggcttt ataggttcaa aagtgagaaa aaatgcaaaa gatttttgat
     5701 gctcatctgc acctttggga tttgggaaaa atacctattt catggatgaa agacgatgaa
     5761 aaattagagc aaaattatga tttttttagg atgaaacaag aatataaaga atttgaattt
     5821 ataggtgcta tgtatgttga ggttaatagt gatgatttgg aaaaggaaat cttgtttgct
     5881 ttggaacaaa aaaagcttca taatcttttg ctttgtctag cagatttaaa acataaagaa
     5941 aaacttaatt cttttagaga agtaatgcat gtaagcaaaa aaggagctaa aagattgttt
     6001 gaagtagatt ttgaagaaaa aatagaaatt ttaaaaactt ttaatatacc ttttgaagct
     6061 tgtatgaaaa atgaagaact cagttttttg gaaaattttt t
//
LOCUS       DARGEY010000082         5978 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.082, whole genome shotgun sequence.
ACCESSION   DARGEY010000082 DARGEY010000000
VERSION     DARGEY010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5978)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5978)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5978
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.082"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..159
                     /locus_tag="SF008_001339"
     CDS             <1..159
                     /locus_tag="SF008_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG8233597.1"
                     /translation="NKQKLDMNSDKFEQYKAMLEQNLQNLKANELKQELVDELKKIYP
                     IKIYYKGN"
     gene            156..1544
                     /gene="ftsA"
                     /locus_tag="SF008_001340"
     CDS             156..1544
                     /gene="ftsA"
                     /locus_tag="SF008_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEG8233598.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDRVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDTESEIKSDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            1560..2672
                     /gene="ftsZ"
                     /locus_tag="SF008_001341"
     CDS             1560..2672
                     /gene="ftsZ"
                     /locus_tag="SF008_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEG8233599.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKSTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            2828..3640
                     /locus_tag="SF008_001342"
     CDS             2828..3640
                     /locus_tag="SF008_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HEG8233600.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDSSRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNG
                     AVQISVDKNGSIEVDGAQNAILFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            3669..4460
                     /gene="flgG"
                     /locus_tag="SF008_001343"
     CDS             3669..4460
                     /gene="flgG"
                     /locus_tag="SF008_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HEG8233601.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(4526..5956)
                     /gene="glnA"
                     /locus_tag="SF008_001344"
     CDS             complement(4526..5956)
                     /gene="glnA"
                     /locus_tag="SF008_001344"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEG8233602.1"
                     /translation="MGKFVNNIDDFFKFCKQNEVLFVDFRFTDMIGTWHHITYNLHAI
                     NEETFQTGIPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADPTIIVFCDVYDIYK
                     GQMYEKCPRSIAKKAMEHLKNSGIADTAYFGPENEFFVFDSVKIVDTTHCSKYEVDTE
                     EGEWNDDREFTDSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHH
                     EVAQGQAEIGVNFGTLVEAADNVQIYKYVVKMVAHLNGKTATFMPKPLYGDNGNGMHV
                     HMSLWKNGVNLFYDKDGYSGLSQTAINYIGGILKNARSVAAFTNPSSNSYKRIVPGFE
                     APCILTYSCQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDGIKNK
                     TIPVGPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRHNSYLKPVMSDIFIDDYQ
                     HLKFETQVWPVEARPTAYEFKTCYSC"
BASE COUNT         2063 a          859 c         1136 g         1920 t
ORIGIN      
        1 aataaacaaa aattagatat gaactccgat aaatttgaac aatacaaagc tatgcttgaa
       61 caaaatttgc aaaatttaaa agcaaatgag cttaagcaag aacttgttga tgaacttaaa
      121 aagatatatc cgataaaaat ttattataaa gggaattgat tttgaatata ttaggaattg
      181 acttaggctc aacccagact tgtgccatta ttgctcaaaa agatgaagat ggattaaaaa
      241 ttattggttt ttccaagtcg aaaaccaacg gggttaaaaa aggtgccatt accaatatag
      301 agcttgcttc taaatctatt gaagaggctg ttagaagtgc tgagatgatg agcggagttc
      361 attatgatag ggttgtggtg tctatatcag gtgcttatac taaaagcgtt gatagcatag
      421 gtgttgttaa tattccaaat catgaaatag gcattaaaga aattcatcgt gctgtaagta
      481 cagctaagca tactgccaat ctaccaagtg gttatgaaat tatccatgtt ttgccttata
      541 attttaaggt taatgatctt gaacatgttg atgatccttt gggaatgagt ggtaatcgtt
      601 tagaagtttc aacccatata gtgatttcac aagaatctca tattaaaaat cttaagaaag
      661 cagttgaatt agctgattta agagtggata atatagttct ttcaggatat gcttcagcta
      721 tagcttgttt agatgatagc gaaaaggaat taggtgctgt tttgattgat atgggtggag
      781 cgatttgtga tatggttgtt catactggaa attcaattag atataatgat tgtttgcaaa
      841 ttggctcgat taatatcacc caagatttat caatggcatt gcatacacct ttaaaagaag
      901 cagaaaaaat caagcttaat tatgcagctc tttcacaaca gcctaatacc cttatacaaa
      961 ttccttcaat gggtgatgaa agaaaagtta atgaagtttc tttggatatt atttcaaacg
     1021 taatttatgc aagagcggaa gaaactttga tgattttggc aaaaatctta agtgataatc
     1081 gttatgccaa tgctataggt ggcggagttg ttttaacagg tggaatgact aagttagcag
     1141 gtattgatga gctagctcct gcaacatttg ataatcgctc agttagactg gctactgcaa
     1201 gaaaagattt gattactggt tttagtgaaa tttttaatga tcctgaaaat acttgtgcta
     1261 taggactttg tttatatgga gcgggatatt ttacgcctta tgaacttgat tctaatgaaa
     1321 aattaagata taaaggggaa attgaaaatt ttaatcgtca aattaaacaa gatattgttt
     1381 tgcaaaaaga tacagaaagt gaaataaaat ctgatttttt tgatgaaaat ttgcaagaaa
     1441 atgatacaat tgcaatacaa gaacaattag attttaaaga gccaaaagaa aaaaaaccta
     1501 gtgttttttc aaatatctgg cataaaatta tgaatcaatt ttaacaagga gaaattttta
     1561 tgagtgaatt tttagtagaa gaaatgcaac ataataaagg tgcaaaaatt aaggttatag
     1621 gctgcggtgg cggtggcggt aatatgatta accatatggt taaaatggga ttaaatgatc
     1681 ttgatttaat tgcagcgaat actgatgcac aagctatttc aatttcatta gcaaaaacta
     1741 aaattcaact tggcgagaaa aaaactaaag gtttgggcgc tggtatgctt cctgaagtag
     1801 gtgcagaaag tgctagagaa agttttgaag aaataaaagc aagtcttagt caaagtgata
     1861 ttgtatttat tgcttcaggt tttggtggag gtactggaac gggtgccact ccagttattg
     1921 cacaagcagc taaagagatt ggagctttaa ctgtttctgt tgtaactatg ccttttgcat
     1981 tcgaaggaaa acaaagaaaa aaacttgctg aaagcggtct ccttgagctt aaaaaagaaa
     2041 gtgattctat tcttgtaatt caaaatgaaa aattattgag cattattgat aaaaaagcag
     2101 gcattaaaga tgcttttagg ttggttgatg atattttagc tcgtgctgta aaaggtatgg
     2161 tgtctatctt acttgataat ggagatatta atgttgactt tgcggatgta agaaccatca
     2221 tgagtcatcg cggactcgcg cttatgggtg ttggtagtgc tagcggtgaa aatgctatag
     2281 aagaggctct ttcaaacgct atagaatctc ctttgcttga tggaatggat attaaaggtg
     2341 ccaagggagt tattttacat tttaaaacaa gttctaattg ctctttgttt gaaatttcgg
     2401 cagcagcaaa tagtatacaa gaaattgttg atgaaaatgc taagattatt tttggttcta
     2461 ccacagatga tagcatggaa gatagagttg aagtaactat tattgcgaca gggtttgaag
     2521 ataaagatac agtagctaaa aaatctaccg aagaagctca agcttctaag aaaaatcctt
     2581 atttaagtct taaaaaggta agcggtggtt acgatgaaga gataatggcg caaattgaaa
     2641 caccaacttt cttgcgtcgt caaatggatt aaaattgatt tttaaagcaa gattgagtca
     2701 aatcttgctt tttatagttt aaaattctct cctaataatc tttcaaatat ttatttttct
     2761 ttgtttttaa aagttggaac actctttgct tttatagtta taaaatctta aatttatagg
     2821 tgaaaatatg caaaatggat attatcaagc aactggcgga atggtaactc agtttaataa
     2881 acttgatgtg attactaata atcttgccaa tatcaataca agtggatata aaagagatga
     2941 tgtggttatt gcagatttta aaaggatttt taaagaaact caggatgagt tgcctataga
     3001 aaatcacaca agagattcat ctcgttttgt aaatactaca atagatggca tcccgcaagt
     3061 ttctcaagaa tatacggatt ttagcctagg ttctttaaag gccacaaaca atcctttgga
     3121 tttggcaatg actagagaag atgcttttta tttggttcag accaaagatg gagaagtaag
     3181 attaactaaa gatggaaatt ttcaacttga tgatgagggt tatttggtaa ataagcaagg
     3241 atacaaggta ttaagtagtg attattttaa taatcctcag aatgctggca tacgcattcc
     3301 taatggtgct gttcaaatta gcgttgataa aaacggaagc attgaagttg atggagctca
     3361 aaatgcaata ttatttgtag cacaagtaga tgatataaga gctttgcaaa aagatgggga
     3421 taatgtctat aaaatagatg atctaacccg tattagagat ttgaaaaact ccaatgctat
     3481 tcgccaaggt ttttctcagg gatcaaatgt taatccagtt actgaaatgg taggactgat
     3541 tgaagcaaac agaatggtag aaatgtatca aaaagttatg acagctcata tggatgactt
     3601 aaatcaagaa gctatcaata agcttgcagc tgttaaataa tttaaaataa aataaaaaag
     3661 gattcaagat gatgagatca cttcatactg ctgctacagg aatggtagcg cagcaaacac
     3721 aaattgatgt tacttcaaat aacatcgcca atgttaatac agcaggtttt aagaaaagtc
     3781 gtgcagaatt tgctgatctt atgtatcaag ttatgaagta tgcaggaact tcaacttcag
     3841 ctactactct ttctccttcg ggtatagaag tgggtgtggg tgttcgtcca acagcggtaa
     3901 ctaaagtttt tactgaagga aatttaaaat caacaagtac tgatggtctt gatatggcta
     3961 ttgcaggtaa tgggtttttt caaatacaac ttcctgatgg cactatagga tatactagaa
     4021 atgggcaatt tacaaaagat aatgaaggta atattgtaaa ttcagatggc tatagacttt
     4081 tacctgaaat gacaatacct gaaggcgcaa cagcaattaa tgttgctaca gatggaaccg
     4141 tttctgtaat gctaccaggg gagcaacaag aaactcaaat tggccaagtg gagctagttc
     4201 agtttataaa tccagcgggt cttcattcta tgggtgataa tctttatctc gaaacaggag
     4261 caagtggtgc acctgttgcg ggtatagcag gacaagatgg gcttggaaca ataagacatg
     4321 gatttataga acttagtaat gttcagcttg ttgaagaaat gacagatctt atcacaggac
     4381 aaagagctta tgaagcgggt tctaaggcca ttacaacaag tgatgatatg ctaggaattg
     4441 taaatcagct taagcgatag ttgatataaa ataaataatt tttaattctt ttttgtttaa
     4501 tggcgtgtta aacgccatta aatttttagc aagagtagca agttttaaat tcataagcag
     4561 ttggacgagc ttctactggc caaacttgtg tttcaaattt taaatgctga tagtcatcga
     4621 taaaaatatc gctcattaca ggttttaaat aagaattatg tcggattaaa gcttctaaac
     4681 ttcctcttag agtatgtggt aattgctcta tccctttttc acgtatttca tccaaagtaa
     4741 gatcaaataa attttcatcc ataggaccca caggaatggt tttatttttg attccatcaa
     4801 gacctgccat taaaagacta acaaaagcta aataaggatt agcagtgcta tcagggaagc
     4861 gaatttctat acgagctgaa tttttgccta tgccataagg aacgcgacaa cttgctgatc
     4921 tgttttgaca agaataagtt aaaatacaag gagcttcaaa gccaggaact attcttttgt
     4981 aagagttgga acttggattt gtaaaagctg caacacttct agcatttttt aaaattccac
     5041 ctatataatt tatagcagtt tgactaagtc cactgtatcc atctttatcg taaaataaat
     5101 ttactccatt tttccataag ctcatatgaa catgcatacc attgccatta tctccgtata
     5161 aaggttttgg cataaaagtg gcagttttgc catttaaatg agctaccatt tttacaacat
     5221 atttataaat ttgaacattg tcagctgctt ctacaagcgt gccaaaattt actcctattt
     5281 cagcttgtcc ttgtgcaact tcatgatgat gaacaaaagt tttaagacct actttttcaa
     5341 gggtttgaac catttcagaa cgaatatcta ctaaagaatc aattggctga actggaaaat
     5401 atccaccttt gtttcttggc ctgtgtccag tattgtagct atcggtaaat tctctatcat
     5461 cattccactc tccttcttcg gtatcaactt catacttaga acaatgagta gtatcaacta
     5521 tttttacact atcaaaaaca aagaattcat tttctggtcc aaagtaagca gtatcagcta
     5581 tgccactatt tttaaggtgt tccattgctt tttttgctat gcttcttgga catttttcat
     5641 acatttgtcc tttgtaaata tcatacacat cacaaaatac tatgatagta ggatcagccg
     5701 taaaaggatc taaaaaagca ctttgagcat caggttttaa aatcatatct gatttttcta
     5761 taggttgcca tccatgaatt gagcttccat caaatggaat gccagtttga aatgtttctt
     5821 cattgattgc atgaagatta taggtaatat gatgccaagt tcctatcata tctgtaaaac
     5881 gaaaatcaac aaaaagcact tcattttgtt tgcaaaattt gaaaaaatca tctatattat
     5941 taacaaattt tcccatattt ttactccttt atgtaatt
//
LOCUS       DARGEY010000083         5794 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.083, whole genome shotgun sequence.
ACCESSION   DARGEY010000083 DARGEY010000000
VERSION     DARGEY010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5794
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.083"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..448
                     /locus_tag="SF008_001345"
     CDS             <1..448
                     /locus_tag="SF008_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233603.1"
                     /translation="IELDDIYIISLSGVEKFDLEEFKRFLESTEAKEKGMGSEVKKAL
                     ENLEVPKTQVPSVEKIPTPSVPNLEVKQVEQLFKDPDEENKNDNGEINIDNLNTPKMT
                     PDIEEKIKRDLIANPPQIFKENNASKPYHLPQTGYDIKLDENSTQN"
     gene            complement(445..954)
                     /gene="lolA"
                     /locus_tag="SF008_001346"
     CDS             complement(445..954)
                     /gene="lolA"
                     /locus_tag="SF008_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HEG8233604.1"
                     /translation="MKKTFLIFFIFIGQLFALDLNFNTFSSNFTQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLAAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDIFKAK
                     IPQNYDIVR"
     gene            1054..3642
                     /gene="secA"
                     /locus_tag="SF008_001347"
     CDS             1054..3642
                     /gene="secA"
                     /locus_tag="SF008_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEG8233605.1"
                     /translation="MFLNTLKAVFGTKNDREVKKYFKRVAQINALEGNYQNLSDDELK
                     AEFAKFKEQILSGEKNENDVLNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVVLS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKAEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANAKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKSIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDIRAKISQNIAEYSANVMNDYMLDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMLRLEIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEAQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            3639..4844
                     /locus_tag="SF008_001348"
     CDS             3639..4844
                     /locus_tag="SF008_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8233606.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYLSTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALKDENLSGFDILVGSALTDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGIPKNPN
                     YDGIHVYSDNAFKDVEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPVDVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            4867..5652
                     /locus_tag="SF008_001349"
     CDS             4867..5652
                     /locus_tag="SF008_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8233607.1"
                     /translation="MSLFTQKNKNFKPLKPLSKSKIITNLILLILFLILFCYCSFSIS
                     AYHFDFSAIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF
                     YIELVRGTPLLVQVLLIYYIIANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS
                     ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQ
                     SAQEINSYTFATLEAYVILAITYLVLTLPISIFSRYLERKCQK"
     gene            5714..5789
                     /locus_tag="SF008_001350"
     tRNA            5714..5789
                     /locus_tag="SF008_001350"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5747..5749,aa:Lys,seq:ttt)
BASE COUNT         2009 a          711 c         1083 g         1991 t
ORIGIN      
        1 gattgaatta gatgatatat atatcatatc tttaagcgga gtggaaaaat ttgatttaga
       61 ggagtttaaa cgctttttag aaagtactga ggctaaagag aagggtatgg gtagcgaggt
      121 aaaaaaagca cttgaaaact tagaagttcc taaaactcaa gttcctagtg ttgaaaagat
      181 cccaactcct agtgttccaa atttagaagt caagcaagtt gaacagcttt tcaaagatcc
      241 agatgaagaa aataaaaatg acaatggaga aatcaatata gataatttaa atacacctaa
      301 aatgactcca gatatagaag aaaaaattaa aagagattta atcgccaatc ctccacaaat
      361 attcaaagaa aataacgcaa gcaagcctta tcatttgcca caaacaggct atgatataaa
      421 gcttgatgaa aattcaacgc aaaattagcg aactatatca taattttgcg gaatttttgc
      481 cttgaaaata tcggagttga tttttggatt tttaatttga ttgtttagat tgattataac
      541 atcattttca aattcatctt tataggatat gctttgaatt tgctcttgat taagcttaat
      601 tgtatagttt atattatcat attttgctgc aagtttatcc ttatctataa gacttgcttt
      661 tttgaaaatt tcattaagat ttggaatgtt atcaagatga gagaaaatga cttgttctag
      721 atcgtgctct actatggtta cttgattttt gttgatataa atctcttttt tactaggagt
      781 atcataactc caatatgctt gatctttgct cagtataaaa tgcccagaat aagaaagtgt
      841 agagtttttg gatttcacta tttgggtaaa attgcttgaa aaggtattaa aattaagatc
      901 aagggcaaaa agttgtccta taaaaataaa aaatatcaag aatgtttttt tcatttattt
      961 tccttaaaaa aatatatttt ttatgtcatt ctagctaatt ttaattaaat aatcgttata
     1021 atgatagttt gaaaaattta taaaggttta aaaatgtttt taaatacttt aaaagccgtg
     1081 tttggcacaa aaaatgatcg tgaagttaag aaatatttca agcgtgtagc acaaatcaat
     1141 gctttagaag gcaactatca aaatttaagc gatgatgaat taaaagccga atttgcaaaa
     1201 tttaaagagc aaattttaag cggagaaaaa aacgaaaatg atgttttaaa tgatgttttt
     1261 gctatagtca gagagacagg taagagaact ttaaatatgc gtcattttga tgtgcagtta
     1321 atcggtggta tggttttgca cgatggaaaa atcgcagaaa tgaaaacagg agaaggtaaa
     1381 actcttgtag caaccttacc tgttgtttta aatgccatga gtggcaaagg cgtacatgtc
     1441 gttacagtaa atgattatct agccaaaaga gatgctgagc aaatgagtgc gatttataat
     1501 tttttaggtt ttagtgttgg cgtggtgctt tcttctcaaa atagtgatat agaacacaag
     1561 caagcttatg attgtgatat tacttatgga accaataatg agtttggttt tgattatttg
     1621 cgtgataata tgaaattttc aaaagctgaa aaagttcaaa gagagcataa ttttgttatc
     1681 gtagatgaag tagatagtat tttaattgat gaggcaagaa ctccgcttat catcagtggt
     1741 cctacaaatc gtactttaga tggttatatt aaagccaatg aagtagctaa acaaatgcaa
     1801 aaaggtgaag cagttttacc ccctgcaaaa cctgagggtg attttgtagt agatgagaaa
     1861 aatcgtaata ttttaattac agaagcaggt attgctaagg ctgaaaaact ttttggcgta
     1921 gaaaatttat acagtcttga taatgctatc ttagctcatc agcttgatca agccttaaaa
     1981 gcacataatc tttttgaaaa agatgtgcat tatgttttaa gaaataatga agttatcatc
     2041 gttgacgaat ttacagggcg tttaagcgaa ggacgtcgtt ttagcgaagg attgcatcaa
     2101 gctttagaag ctaaagaaaa tgtaaaaatt caagaagaaa gccaaactct agcagatatt
     2161 acttttcaaa attattttag aatgtacaat aaacttgcag gtatgacagg aactgcacaa
     2221 acagaagcga ctgaattttc tcaaatttat agtttagatg ttatttctat accgacaaat
     2281 attcctatta aaagacaaga taaagatgat cttatctata aaactcaaaa tgaaaaattc
     2341 aaagctgtaa ttgaagagat taaaaaagcc aatgctaaag gtcagcctgt acttgtagga
     2401 accgcaagta tagagcgcag tgaagttttt cacaatatgc ttgtaaaaga gaaaatccct
     2461 catcatgttt taaatgctaa aaatcacgag caagaagctt tgattatcca agatgcaggt
     2521 aaaaaaggtg ctgtaactat cgctacaaat atggcaggtc gtggtgtgga tataaaaatc
     2581 gatgatgaga ttagggcttt gggtgggctt tatatcatcg gtacagaaag acatgaaagc
     2641 cgccgtattg ataatcaact tcgtggtcgt gcaggaaggc agggtgatcc tggaataagt
     2701 cgtttttatc taagtttaga agataatctt ttaagaattt ttggtgggga tcgtattaaa
     2761 agtattatgg atcgcttggg catagaagag ggcgaaagca tagaatcaag aatcgttaca
     2821 agagcggttg aaaatgcgca aaaaaaagtt gaaagcttgc attttgaaag cagaaagcat
     2881 ttgttagaat acgatgatgt agcaaatgaa caaagaaaaa ctatttatcg ttatcgtaat
     2941 gagcttttag atgaaaacta tgatattaga gctaaaattt ctcaaaatat cgctgaatat
     3001 agcgcaaatg taatgaatga ttatatgctt gacgaaagcg gttctaatgt aaattttgaa
     3061 aatttgaaag caaaaatttt gtatgaatgt tcaactcaga ttagtgaaaa agattttgag
     3121 aatttaagcg tcattgaaat gcaagacaag ctaagtcaaa ttcttgaaaa ttcttataat
     3181 gaaaagatgt taagacttga gattaaagaa ttgcgtaata tagagcgtat tttatatttg
     3241 caagttttgg ataatgcttg gagagagcat ttgtatcaaa tggatatttt aaaaacagga
     3301 ataggacttc gtggatacaa tcaaaaagat cctcttgtgg aatataagaa agaaagttat
     3361 aatcttttct tggagttggt caatcgtatt aaatttgata gtattaaact actttttagc
     3421 gtgcaattta atcaagaaga ggcgcaaaat ttagaaaata aagccaatga agaaaatgaa
     3481 aagctacttc aaagctcagt agaaatgggc gcaagcgaag ataatcttgg cgaagctgaa
     3541 tttaaaaaag ttccacgcaa tgctccttgt ccttgcggaa gtggaaaaaa atttaaagaa
     3601 tgccatggaa aaagtggtcc taagcaagga attttagctt gaataaaagc gttttaaaat
     3661 atttactttt taagtattta agatttgata aagagcaacc ctttatcaat ctttctatgc
     3721 ttttggcctt tttaggagtt tgtgtaggac tttgcgtttt gcttgtagct atggcaatta
     3781 tgaatggttt tgataaagaa tttgaaaaac gcttttttgt gatgaattat cctattacta
     3841 ttttgcctaa attctacgct cctgtaaatg atgaatttat agatgagtta agaaaaacat
     3901 ttccaaattt gttatttagc ccttatttaa gcactcaagt tgttgtaaag ggagataatc
     3961 gttttgaagg tggtgtgctt tttggcgtta attttaatga tgaaaaaaaa ataaacgaag
     4021 tggttgctaa agctttaaag gatgagaatt taagtggttt tgatatactt gtaggatcag
     4081 cacttactga tgaatttggt ttgcataaaa atgacaaact ttcacttatt ttttcaaatc
     4141 ttaatcctag tggattttct ttagtaccgc aaactaaacg ttttgatgtt aaagcgcgtt
     4201 ttacttcagg gcttgcattt tatgataaag cttatatgta cacagatgtt gatgcattga
     4261 aaaaagtact tggaatacct aaaaatccaa attatgatgg aattcatgta tatagcgata
     4321 atgcttttaa ggatgttgaa aaaattaaat cttatttaaa agatgattat gctgtggtgg
     4381 gttggtggga gcaaaataaa aatttttttt cagccttaga acttgaaaaa agagcgcttt
     4441 ttatagtgtt gatgcttatt attttggttg caagtttaaa tatagtaagt tctttattga
     4501 tgatagtaat gaatcgtcgc agtgaaatag cacttttact tgctctaggt gcaagcaaaa
     4561 atgaggtaaa aaagagtttt tttgccttag gtatgcttat tggtggtggt ggtatgatag
     4621 tgggtgtggt acttgcattt tttgctttat ggcttttggg aaattttgat attgtaactt
     4681 tacctgttga tgtttatgga accagtaaat taccacttga tttgtcttta atggattttt
     4741 ctttaaccat tgtgggtgct ttaataatca tagctttatc atctttttat cctgcaaaaa
     4801 aagcaactca aattaatatt ttagatactt taagaaatga ataaattgta attttggaga
     4861 tttttattgt ctttgtttac tcaaaaaaat aagaatttta aacctttaaa acctctatca
     4921 aagtcaaaaa taatcactaa tttaattctt ttgattttat ttttaatatt gttttgttat
     4981 tgtagtttta gtataagtgc ttatcatttt gattttagcg caattgcaac ctataaagaa
     5041 aaatttcttc aaggtttttt aaatacttta ataatcagtt ttttttcttt attgttgagt
     5101 ataattttgg gtggagtttt ttgtgctttt tctttaagtt cgattgtttt tttaagattt
     5161 ttatctacat tttacataga gcttgtcaga ggaacccctt tactagtgca ggtattattg
     5221 atatattata tcattgcaaa taatttagga cttgataatc gatatgtggc tggagttatt
     5281 attttatcat gtttttctgc tgcttactta gctgaaatat ttagagctgg aattttaagt
     5341 atttctatat ctcagcttga gagcgctagg gctttagggt taaaagagat gcaggttttt
     5401 gcgtatgtaa tttttcccca agctttaaaa aatattttag caccgctgag tggacaattt
     5461 gcaaatttaa ttaaagatag ttccttatta agcgttattg ctgtaaatga attaacccaa
     5521 agtgcgcaag agataaattc ttatactttt gctactcttg aagcttatgt aattttggct
     5581 attacatatc ttgttttgac tttacctata agtatatttt ctcgttattt ggagagaaaa
     5641 tgccaaaaat gatttaaaaa agcttgacaa atagagctaa ttttggcata atcacatttt
     5701 tatttcagaa aatgtctcgt tagctcagcc ggtagagcat ctccctttta aggagggggc
     5761 cgttggttcg aatccaacac gggacaccat tata
//
LOCUS       DARGEY010000084         5771 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.084, whole genome shotgun sequence.
ACCESSION   DARGEY010000084 DARGEY010000000
VERSION     DARGEY010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5771)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5771)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5771
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.084"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            29..2119
                     /gene="cfrA"
                     /locus_tag="SF008_001351"
     CDS             29..2119
                     /gene="cfrA"
                     /locus_tag="SF008_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent ferric enterobactin receptor
                     CfrA"
                     /protein_id="HEG8233608.1"
                     /translation="MKKICLSVCAIGLLSSNAISQNVELDSSIVSASGFTQDIKEAPA
                     TINVISKKELQSKPYRDVAEAIADIPGVDLYASKGKTGSYNITMRGITGYTLVLIDGR
                     RQGIGGEVGPNGFNEISNSLLPPISSIERIEVIKGPMSTLYGSEALGGVVNIITKKVS
                     DKWETSVSLDALLNENKDWGNTYGTSIYSSGPLMNDKLGLTLRFREFYRQQSNVEFTN
                     GSGQRVQGDQAQSPTKANNFNIGTRVSYLANNYNTFIFDIDFSRNHYDNKQGQLGTIT
                     SPGSAPGSLTGGYADIMEVDKFVTYLSHEGVYENFSITSGLQYNRVSNDGREVVGQAT
                     QPFLGENRDIVAEDIILDTKSVIPLGQSHILSAGGEYRLEKMQDKIANPTNFDQYLLA
                     IFAEDEYSIKDNLRLTFGARYNHHEIFGNNISPRAYLVYNPTDELTLKGGVSTGFRTP
                     YANRLINGAYNYSGQGRFPIYGNPDLKEETSLNYEIAAIYNNDLFYVSATGFLTNFKD
                     KISTQKYNKDNMIPGIGICGVDRCFKAINHGKVEYKGIELGAGISPLDNLNVNFAYTY
                     LDSEVKEAQDKSVIGKPEQDSLKHNIMLKTEYSFYNKITPWIKGEWQIDRYMGDTNIN
                     REYYKDIFLASMGVRYDINKQWSINAAIYNLFNKSFTDGWESYQNSGAPTWVNTYNRI
                     EEGRRIYISINGSF"
     gene            2420..3214
                     /locus_tag="SF008_001352"
     CDS             2420..3214
                     /locus_tag="SF008_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HEG8233609.1"
                     /translation="MMKSRDKKDLILESIIQTYLLDNAPIGSNELNSNLCIPASTIRV
                     YLKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWEKEQDKNIHIKNESFLKELSKEF
                     EIYCLVYGGRSLVLKEVLDLNTKFIVLDFEDEELVLKYEKEAWNFLQSLIGLDLSSIE
                     KIALRVHFIDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCQIHRHFKESLE
                     FEPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            3211..3738
                     /gene="grpE"
                     /locus_tag="SF008_001353"
     CDS             3211..3738
                     /gene="grpE"
                     /locus_tag="SF008_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEG8233610.1"
                     /translation="MSEQKQEIENENAQNSENLQDDLQDNEKNETNELQKELEELKDK
                     YMRANAEFENIKKRIEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECQDEISLKIK
                     EGVQNTLDLFLKKLEKHGVALIKDEKEFDPNLHEAMFHVDSENHQSGEVVQVLQKGYK
                     IADRVIRPTKVSVAK"
     gene            3760..5631
                     /gene="dnaK"
                     /locus_tag="SF008_001354"
     CDS             3760..5631
                     /gene="dnaK"
                     /locus_tag="SF008_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEG8233611.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVVDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLASEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVAAADKENIQKALDDL
                     RETLKNQNASKEEIESKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
BASE COUNT         2147 a          758 c         1134 g         1732 t
ORIGIN      
        1 taaatcaata tttaacaaaa ggagaaaaat gaaaaaaata tgtctatcag tttgcgccat
       61 tggtctctta agctccaatg ccatatcgca aaatgtagaa ctagatagct caatcgttag
      121 tgcttctggc tttactcaag atattaaaga agctcctgct actatcaatg ttatcagtaa
      181 aaaagaatta caaagtaagc cttatagaga tgttgcagag gctatcgcag atatcccagg
      241 cgttgattta tatgctagca agggaaaaac aggttcttat aatattacta tgagaggtat
      301 tacgggatat actttggttt tgattgatgg acgccgtcag ggtattggtg gggaagttgg
      361 tcctaatggc tttaatgaaa tttcaaattc tttattgcct ccaatttcta gcatagaaag
      421 aatagaagtt ataaaaggtc ctatgagtac tttatatggc tccgaagctt taggcggggt
      481 ggtaaatatc attaccaaaa aagtaagtga taaatgggaa acttctgtaa gcttggacgc
      541 tcttttaaat gaaaataaag attggggcaa tacttatgga acaagtattt attctagtgg
      601 tcctttgatg aatgacaaat tgggtctaac acttcgattt agagaatttt acagacagca
      661 atctaatgtt gaatttacaa atggaagtgg acaaagagtt caaggagatc aagctcaaag
      721 tcccacaaaa gcaaataatt ttaatatagg aacaagagtc agttatttgg ctaataatta
      781 taataccttt atatttgata tagatttttc aagaaatcat tacgataaca aacagggtca
      841 attaggaacc atcacaagcc caggtagtgc gccaggtagc ttaacgggtg gttatgcaga
      901 tattatggaa gttgataaat ttgtgactta tttaagccat gagggtgttt atgaaaactt
      961 ttctatcact tctggtttgc aatacaatag ggtaagcaat gatggccgtg aagtcgtagg
     1021 gcaagctaca cagccgtttt tgggagaaaa tagagatata gtcgcagaag atattatctt
     1081 agatactaag tctgtcattc ctttgggaca aagtcatatt ttaagcgcag gtggtgaata
     1141 taggcttgaa aaaatgcaag ataaaatagc taatccgacc aattttgatc agtatttatt
     1201 ggcaatattt gcagaggatg agtacagcat aaaagataac ttaagattga cttttggagc
     1261 aagatacaat catcatgaaa tttttggaaa taatatttcg ccaagagctt atctagttta
     1321 taatcctact gatgaactta ctttaaaagg cggtgtatct acgggtttta ggactcctta
     1381 tgcaaatcgt ttgataaatg gagcttataa ttatagtggt caaggtagat ttcctatata
     1441 tggaaatcct gatttaaaag aagagacatc tttaaattat gaaatagcag ctatttacaa
     1501 taatgatttg ttttatgttt ctgcgacagg ttttttaaca aattttaaag ataaaatttc
     1561 aacccaaaaa tataataaag acaatatgat tccaggaatt ggtatttgtg gtgttgatag
     1621 atgttttaag gcaatcaacc atggcaaggt cgaatataaa ggcatagagc ttggagcagg
     1681 gataagccct cttgataatt taaatgtaaa ttttgcttat acttatcttg atagtgaggt
     1741 taaagaagca caagataaaa gtgtgatagg taaacctgaa caggatagtt taaaacacaa
     1801 tatcatgtta aaaactgaat acagcttcta taataaaatt accccttgga taaaaggcga
     1861 atggcaaata gatcgctata tgggtgatac taatataaat agggaatatt ataaggatat
     1921 ctttttagct tctatgggtg tgcgttatga tatcaataag caatggagta tcaatgcagc
     1981 tatttataat ctttttaaca aaagttttac agatggttgg gaatcttatc aaaatagcgg
     2041 tgctcctact tgggtcaata cttacaatcg tatagaagaa ggaagaagaa tatatatttc
     2101 cattaatggt agtttttaag ctttgataga aaagccaaag agcttataaa ggcttctttg
     2161 gttttttgtt tatagcatct tgtgctttta aaaaagttaa attatcgaat ctatttaaaa
     2221 tttcttatct aattatcacc ctgtttacca atcttgaaat atatcctatc cttataaaaa
     2281 agtaactaat aaaactttag ttatatagac taaataaaat taagtatatt tttttatatt
     2341 tatacttgac aaaataacac tcaatgttgt ataatatatc tagcaatcaa aaaatagagt
     2401 gctagcttta aaggaaaaca tgatgaaaag tcgagataaa aaggatttga ttttagagtc
     2461 tattatccaa acttatcttt tggataatgc acctattggt tctaatgaat taaattcaaa
     2521 cctttgtata cctgcttcga ctatacgcgt ttatcttaaa agacttagcg atgagggttt
     2581 gatcactcag cttcatataa gtagtggtag aattcctact attttaacga tgcaaaatta
     2641 ttggcaaagt ttttgggaaa aagaacaaga taaaaatatc catatcaaaa acgaaagctt
     2701 tttgaaagag ttaagtaaag aatttgaaat ttattgtctt gtttatggag gtagaagttt
     2761 agtacttaaa gaagtactag atcttaatac taaatttata gtgcttgatt ttgaagatga
     2821 agagctggtt ttaaaatacg aaaaagaagc gtggaatttt ttacaaagtc ttatagggct
     2881 tgatctttct agtatagaaa aaatagcttt gagagttcat tttatagatc ttgtagaaaa
     2941 aatagctagc ttaagacaaa atttgatttg ctatagaagt aatgaagaaa gagcttatca
     3001 aatttatcaa aatgatgaat ttgttaagct cttagattgt caaattcacc gtcattttaa
     3061 agaaagtctt gaatttgaac ctttatttaa agaaggtttt atggggctta aggtagatgc
     3121 gcagtttttg ggcgaagatg taaatattat cttagcaggt agtgtttata cggattataa
     3181 aaagatatta caatacataa aggaggcggc atgagcgaac aaaagcaaga aattgaaaat
     3241 gaaaatgcac aaaattctga aaatttgcag gatgatttgc aagataatga aaaaaacgaa
     3301 acaaatgaat tacaaaaaga attagaggaa ttaaaagata aatatatgcg tgcaaacgct
     3361 gaatttgaaa atattaaaaa aagaatagaa aaagaaaagc taagtgctat ggcttatgca
     3421 aatgaaagct ttgcaaagga tttgcttgat gttttagatg ctttagaagc agctgttaat
     3481 gtcgaatgcc aagatgaaat tagcttaaaa atcaaagaag gagtgcaaaa tactttagat
     3541 ttatttctta agaaacttga aaaacatggg gtggctctta tcaaagatga aaaagagttt
     3601 gatcctaatt tacacgaagc aatgtttcat gtagatagtg aaaaccatca aagtggtgaa
     3661 gtggttcaag tgcttcaaaa aggttataaa atagccgatc gcgtgatccg cccaaccaaa
     3721 gttagtgtag caaaataaat tttaataaaa ggataaaaaa tgagtaaagt tataggtata
     3781 gatttaggaa caaccaattc ttgtgttgct gtgtatgaac gcggcgagag caaagtaatc
     3841 ccaaacaaag aaggaaaaaa cacaactcct tcagtggtag cttttacaga taaaggcgaa
     3901 gttttagtag gcgatagtgc aaaacgccaa gcggtaacca accctgaaaa aaccatttat
     3961 tctatcaaaa gaattatggg tttaatgatc aatgaagatg cggctaaaga agctaaaaat
     4021 agacttcctt accacatcac cgaaagaaat ggtgcgtgcg caatagaaat cgcaggtaaa
     4081 atttatactc cgcaagaaat ttcagcgaaa gttttaatga aactaaaaga agatgctgaa
     4141 gcttttttgg gcgagagtgt tgtagatgcg gttattactg tgcctgcgta ttttaacgat
     4201 gcacaaagaa aagcaacaaa agaagcagga actatcgcag gacttaatgt attaagaatt
     4261 atcaatgagc ctacttcagc agctctagct tacggacttg ataaaaaaga tagtgaaaaa
     4321 attgtggttt atgatctagg tgggggaact tttgacgtta ctgtgcttga aactggcgat
     4381 aatgtagtag aagttttagc aacaggtggt aacgctttct taggtggtga tgattttgat
     4441 aataaactta tcgattttct agcaagtgaa tttaaagatg aaacaggcat agatcttaaa
     4501 aatgatgtta tggctttgca acgcttgaaa gaagcagcag aaaatgctaa aaaagaatta
     4561 agctcagcta atgaaactga aattaattta ccatttatca cagctgatgc gagtggccca
     4621 aaacacttgg ttaaaaaact tactagagct aaatttgaag gtatgattga ttctttagtg
     4681 gctgaaacca tcactaaaat caatgaagta gtaagcgatg cagggcttaa aaaagatgag
     4741 atcaaagaaa tcgttatggt agggggctct actcgtgttc ctttagtgca agaagaagtg
     4801 aaaaaagcct ttaataaaga tcttaataag tctgtaaatc ctgatgaagt tgtggctatc
     4861 ggtgcggcga ttcaaggtgc ggttataaaa ggtgatgtaa aagatgtgct tttacttgat
     4921 gttacaccgc tctctttggg tatagaaact ctaggcgggg taatgactaa gattatcgaa
     4981 aaaggtacaa ctattccaac taaaaaagag caagttttct caaccgctga agataatcaa
     5041 agtgctgtaa ctatcaatgt tttacaaggg gaaagagaat ttagtcgtga taataaatct
     5101 ttaggaaatt ttaatcttga aggaattcca ccagcaccac gcggtatgcc acaaatcgaa
     5161 gttacttttg atatcgatgc aaatggtatt ttaactgtta gtgcaaaaga taaagcaaca
     5221 ggtaaggctc aagagatcaa aatcacaggt tcaagcggac ttagcgagga agagattaat
     5281 aacatggtaa aagatgctga acttcacaaa gaagaagaca aaaaacgcaa agaagctgta
     5341 gatgctagaa atgcagctga tagcttggcg catcaagtag aaaaatcttt aagtgagttg
     5401 ggtgaaaaag ttgccgctgc tgataaagaa aatattcaaa aagctcttga tgatttgcgt
     5461 gagactttga aaaatcaaaa tgcaagcaaa gaagagattg aaagcaaaat gaaagcttta
     5521 agtgaagttt ctcacaaact agctgaaaat atgtataaaa aagatgagcc aaacacagca
     5581 aatgataaaa agaaaaaaga tgacgatgta atcgacgctg aagttgagta atcttaaaat
     5641 ctctattcaa gcctttttaa aaggcttgaa aattttttaa aattttaaaa aaatgacaaa
     5701 atctgtaaaa tataattttt ttattagctt gctacctaat ttttcattga ttttttaacc
     5761 aattcttttt g
//
LOCUS       DARGEY010000085         5749 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.085, whole genome shotgun sequence.
ACCESSION   DARGEY010000085 DARGEY010000000
VERSION     DARGEY010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5749)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5749)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5749
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.085"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..266)
                     /locus_tag="SF008_001355"
     CDS             complement(<1..266)
                     /locus_tag="SF008_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEG8233612.1"
                     /translation="MQSHIKIKFHFKCIIGILDFERRKKQKIIIKLKAKANEFLNYAE
                     VITKIKTWYKKEEFYTLEESLDFVSLNLKKDFPNLTNLNIKIFKP"
     gene            complement(251..859)
                     /gene="plsY"
                     /locus_tag="SF008_001356"
     CDS             complement(251..859)
                     /gene="plsY"
                     /locus_tag="SF008_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEG8233613.1"
                     /translation="MENLIIYAFIYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNV
                     LRVVKEKNPKLAKKLAIATIILDFAKAAIPLLILKFLHYDQALLWSVAVLAIFGHCFS
                     IYLLFEGGKGIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALLAFVISS
                     FIFNYDLEIHTHAPVFIIAFIIVYKHLPNIKRLIFKEECKVI"
     gene            1059..2084
                     /locus_tag="SF008_001357"
     CDS             1059..2084
                     /locus_tag="SF008_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEG8233614.1"
                     /translation="MKVKSLLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGISTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
     gene            2178..3515
                     /locus_tag="SF008_001358"
     CDS             2178..3515
                     /locus_tag="SF008_001358"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEG8233615.1"
                     /translation="MKLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPANLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLTNLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEARDIKLLEKEMKNVVEFFKKALNG"
     gene            3508..3978
                     /locus_tag="SF008_001359"
     CDS             3508..3978
                     /locus_tag="SF008_001359"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HEG8233616.1"
                     /translation="MAKTFKFIFYFWGAFVLVFALDQWVKSLTLAGFRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIGVLFIYLFWQRTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            3962..4414
                     /gene="hemJ"
                     /locus_tag="SF008_001360"
     CDS             3962..4414
                     /gene="hemJ"
                     /locus_tag="SF008_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HEG8233617.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEVVKIQERKLYYYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSTKSGKYFRIYNEFPTIMFIIIALMMVVRPF"
     gene            complement(4411..>5749)
                     /locus_tag="SF008_001361"
     CDS             complement(4411..>5749)
                     /locus_tag="SF008_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEG8233618.1"
                     /translation="FQNLALKYSHTMMEKSLQKGFNVELLKQPKEKIPKQDKSYMLYA
                     HVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKDKGFDFTSMYVGGGTTLIN
                     EEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDETLKK
                     VARYNKFGSSQELQEKISKALGILPIFSIDLIFNLPGQSEKQLLNDLEIAKNLAPQQI
                     TTYPLMKSNLTKDNIAKSLGVSIEDNEFAYYQIIREFFKDYTQNNGWSFSLEKNKLND
                     EYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKEIIK
                     YVFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATKFGQYL
                     FVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSTSMEFKAETN"
BASE COUNT         1940 a          743 c          964 g         2102 t
ORIGIN      
        1 ggtttgaaaa tttttatgtt aagattggtt aaattaggaa aatctttttt taaatttaag
       61 cttacaaagt ctaaagactc ttcaagggtg taaaattctt cttttttata ccatgtttta
      121 attttggtaa ttacctctgc ataatttaaa aattcatttg ctttagcttt aagcttgata
      181 ataatttttt gtttttttct tctttcgaaa tctaatatac caatgataca cttaaagtga
      241 aattttattt ttatatgact ttgcattctt ctttaaaaat caatctttta atattaggta
      301 gatgtttata tactataata aaagcgataa tgaaaacggg tgcatgtgta tgaatttcta
      361 agtcataatt aaatataaaa gaacttataa caaaagcaag taacgctgct aaagaagcta
      421 gcgaagatat tttaaaaatt tttccaataa ctacccacac aataaatgct gtaagcactt
      481 ccaatggaag taaaactatc atagcgcctg ctcctgttgc tatgcctttc cctccttcaa
      541 ataacaagta aattgaaaaa cagtgtccaa aaatagccaa aactgcgacg ctccaaagca
      601 aagcttgatc ataatgaaga aatttcaaga ttagtaaagg aatagctgct tttgcaaaat
      661 ctaaaattat tgtagcaatg gcaagttttt ttgctagttt gggatttttt tcttttacta
      721 ctcttaaaac attggttgct cctatacttt ttgaaccttc ttttttgata tcagttttag
      781 caaaaaattt agctaggatt agcccaaaag ggattgaacc taaaagatat ataaaagcgt
      841 aaattattaa attttccata atatcctttt caaatcatct taaaatttta agatttataa
      901 ctaaaaatta tatcttatga aaataaataa acaaaaaata atttttaaga taaaattagt
      961 attaattaat tgtaaatatt ttttaataat atttattttt atttaagctc taaatgatta
     1021 ttattttatt ttaatttatc tttaatagga gtttataaat gaaagtaaaa tcattgctaa
     1081 tcgcatcctt agttgctttt tcaagcttaa atgctgcaag tcttatagat gaagctaaaa
     1141 attcaggtct tgttgcctta ccaaaagatc aaaaaggcgt tgatgaaatt ttaaaacaaa
     1201 atggagtaaa ggctagtgaa tttactcttg aaaaagcaga gcttggcaaa aagctctatt
     1261 ttgaaccacg tctttcaaaa agtggtatca tttcttgtaa tacctgtcat aatgtaggac
     1321 ttggtggaac agatggaatc agtactgcaa taggtcataa atggacagca aatcctcatc
     1381 atttaaattc accaacagtt tataatgcag ttttaaataa tactcaattt tgggatggtc
     1441 gtgcaggaac attagccgat caagctaaag gtccaatcca agctgatcct gaaatggcaa
     1501 ctcctgctaa acttgcagta gaaaaaattt catctttgcc tgaatatgtg agtgagttta
     1561 aaaaaatcta tggtaaaagc ggtgtaaatt ttgacaatat tgctgatgca attgcaaatt
     1621 ttgaaagaac tttgatcact ccatctcgtt ttgataaatt tttagaaggc gatgaaaaag
     1681 ctttaacaaa agaagaacaa aaaggcttaa agctttttat agataaaggt tgtgtagctt
     1741 gtcataatgg tgtgaattta ggtggcaata tgcaagcgtt tgaagttgct ggtaaatata
     1801 aatttgcaaa tttaggtgat tttaaaggtg atgcaaatgg catggtaaaa actccaactt
     1861 taagaaatgt tgctgaaact gctccatatt ttcataatgg tgcgatttgg aatttaaaag
     1921 atgctattaa ggaaatgggt agtgtgcaac ttggcattaa aatttctgat aaagaagcaa
     1981 aaagtattga aactttctta aaatctttaa caggaacaaa accagcaatt gtttatccac
     2041 aacttcctat ttctactgaa aaaactccta aacctgaact ataaggttcc aaacaagctc
     2101 taattttaga gcttgtttaa atttctttat cttagctttg ttataattgt ctttaaattt
     2161 tgctagaaag gtttgcaatg aaactttttg gaactgatgg agttcgtgga aaagcgggtg
     2221 aatttttaga tagttttttg gctatgcgtt tagcaatggc tgcgggtatt tattttaaag
     2281 ataaaagtat tactaataat atcttagtag gaaaagatac aagaagaagc ggctatatga
     2341 tagaaaatgc tattgtttca gggcttactt ctataggata taatgttata caaattggtc
     2401 ctatgccaac tcctgcgatt gcattcttaa ctgaagatat gcgttgtgat gcagggatta
     2461 tgatttcagc ttctcacaat ccttattatg ataatggtat taaatttttt gatgctcatg
     2521 gaaacaaact cagtgaagat atagagaaaa aaatagaaga aatttatttt gatgataagc
     2581 ttatacaagc ctctaaggta gatatggaga aaattggtca agcgaaaaga attgatgatg
     2641 ttataggaag gtatattgtt tctattaaaa attcttttcc aaaagatctt actttaaagt
     2701 ctttgcgtgt ggttttagat gtggctcatg gggcagctta taaggtagca cctactgttt
     2761 ttaaggaatt aggtgctgaa gttatagtaa tgagcgataa acctaatgga cttaatatca
     2821 atgaaaattg tggagcttta catcctgcaa atttagctgc tgaggtaaag cgtttgcgtg
     2881 cagatgtggg ctttgctttt gatggtgatg cagatcgttt ggtggttgta gatgaaaaag
     2941 gcgaagtggc taatggggat agtttattgg gcgtattggc actttatctt aaagaacaag
     3001 gtaaattaca atcaagtgtt gtggctacta taatgagtaa tggtgcttta aaagagtttt
     3061 taaataaaca tggtatagaa cttgatactt gtaatgttgg cgataaatat gtgcttgaaa
     3121 aactaaaagc caatggtgga aattttggtg gagaacaaag tgggcatatt atttttagcg
     3181 attatgcaaa aactggagat ggtttgatag ccgccttgca atttagtgct ttaatgcttt
     3241 ctaagaaaaa atctgcaagt tctattttgg gtcaagttaa accttatcct cagcttttaa
     3301 ccaatcttaa aattgcagaa aaaaaagatt tagataaaat taaaggttta aaagaattaa
     3361 aaaaagattt agaaaataaa aatattaata ccttatttcg ctattctgga acagaaaatt
     3421 tgataagact tttactagaa gccagagata ttaagctctt agaaaaagaa atgaaaaatg
     3481 ttgtggagtt ttttaagaaa gctttaaatg gctaaaactt ttaaatttat tttttatttt
     3541 tggggtgcct ttgttttggt ttttgccctt gatcaatggg taaaatcctt aactttagca
     3601 ggatttagat ggcagagtga atacttagat ttaacttatg ctctaaatac aggcgtagct
     3661 ttttcaatgt tgagtttttt agaacataat ttaaaatatt tacatcttgc tttaattggc
     3721 gtgcttttta tttatctttt ttggcaaaga acacttttaa aaactcatag catagctttt
     3781 ggaatgatgc ttggtgccgg cgtttcaaat ttattggatc gttttataca tggaggtgta
     3841 gtggatatgt ttttttggca taaatggttt aattttgcta tttttaatgt tgcagatgtc
     3901 atgataaata taagtgtggc tttgatttta atacaagaaa tatttaaaaa aaggaaaaaa
     3961 gatgacagaa tggattaatg attattattt ttggattaaa tgggtgcatt atttggcatt
     4021 tgtttcttgg atggctggac ttttttattt acctcgtctt tttgtgtatc atgctgaaca
     4081 taaagacaat aaaggttttg ttgaggttgt aaaaattcaa gaaagaaaac tttattatta
     4141 tatacaaact cctgcaatga ttgtgacttt aatcacagga agtttaatgt tgcatgctca
     4201 taaggaagtt ttaatggtag gtgcgggttt tatgcatgtt aaacttacct gtgttacact
     4261 tttgattatt ttccatatac ataattatta ttgtttaaaa gctttagcaa atgatacttc
     4321 tactaaaagt ggaaaatatt ttagaattta taatgaattt ccaactataa tgtttattat
     4381 tatcgctcta atgatggttg ttcgtccctt ttagtttgtc tccgctttaa attccatgct
     4441 agtggagtta agcggatcaa tattttcttt catgatatcg atataatctt tatttttaag
     4501 acgcttatca tctctaaata ctgcgcgcac aagatccatt cctgtgtaaa aatctttcat
     4561 taaaaccaca aaaagatatt gaccaaattt ggttgcgatt aaagcatttt gatcttttat
     4621 gatggcaccg cttgttttaa gccctaaaag ttctatgaaa agttcttttt cgagattgca
     4681 atttagagtt ttgttaaatt tatcaatttc tattttccct gaaaaaattt cagttaaaaa
     4741 gacatatttg ataatttctt ttttatcaaa acaagctttg gctatattag cattttgttt
     4801 ttcttgtata aatttggcat aatcatttag attaaatgca ttaattaaaa gctctccatc
     4861 taagaagcta aatgctccac tacctactcc taggtattca tgatgagagc taacatattc
     4921 atcattgagt ttattttttt ccaaagaaaa actccaacca ttgttttggg tatagtcttt
     4981 aaaaaattcg cgtatgattt gataataagc aaattcattg tcttcaatgc tcactcctaa
     5041 acttttggcg atattgtctt tggtaagatt tgatttcatt aaaggatagg ttgtgatttg
     5101 ttgcggggct aaatttttgg caatttctaa gtcatttaaa agttgttttt cgctttgtcc
     5161 tggaagattg aaaataagat ctatactaaa aataggcaaa attcctaaag cttttgaaat
     5221 tttttcttga agttcttgag atgaaccaaa tttattatat cttgccactt tttttaaagt
     5281 ttcatcatca aaactttgaa tcccgcaact taaacgatca attatgcctt taaacataga
     5341 aagcttattt ggatcaatat gatttggatc gctttcgcat gaaatttctt ttatattaaa
     5401 taatttttta caaagttcta aggtttttaa tagttcctct tcgttaatca gtgttgtacc
     5461 accacccaca tacatggagg taaaatcaaa acctttatct ttcatgattt taatttcttc
     5521 tctaagattt tgaaaatata ctttggctaa attttcatca taataatatt tatgaaagct
     5581 acaataagga caaaaagtat ggcaaaaagg tacatgagca taaagcatat agcttttatc
     5641 ttgttttgga attttttctt tgggttgttt taaaagttca acattgaaac ctttttgaag
     5701 agatttttcc atcatagtat gagagtattt taaagctaaa ttttgaaat
//
LOCUS       DARGEY010000086         5719 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.086, whole genome shotgun sequence.
ACCESSION   DARGEY010000086 DARGEY010000000
VERSION     DARGEY010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5719)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5719)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5719
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.086"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            47..163
                     /locus_tag="SF008_001362"
     CDS             47..163
                     /locus_tag="SF008_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233619.1"
                     /translation="MPMKKIILFLLCFGFAFACSEHSHTDFKDLNKTEYNSQ"
     gene            174..1178
                     /locus_tag="SF008_001363"
     CDS             174..1178
                     /locus_tag="SF008_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG8233620.1"
                     /translation="MKKIFLMFLTAFSFLGASELNIYSARHYDADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNANIDISKMKNYEDLAKAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEIGFR
                     "
     gene            1178..2794
                     /locus_tag="SF008_001364"
     CDS             1178..2794
                     /locus_tag="SF008_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEG8233621.1"
                     /translation="MYKTLKYYKLGAILLALFLALPIFGIFAELFYILFQNFNTSNLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISVGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRMDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     ALFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALITALITTFLAYFLMFSSRIVKNHFFNLFILKISSLGYSIPAAALGISIIVLFV
                     FLDKFFHMSLLGNSLLVLVFAYIIRFLASAIYSLEGGYSKIHLNIDEASLNLRASYFI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLFIVFLSLMVVVWMDKITRKDDVRN"
     gene            2778..3686
                     /locus_tag="SF008_001365"
     CDS             2778..3686
                     /locus_tag="SF008_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8233622.1"
                     /translation="MMLEIKNLSKNFEKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAIARGCQLLLLDEPFSNLDQNLKQDLRRE
                     LKKMIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEEKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAKILQKEFLGAFYRLKLRY
                     KNIEFFMLLSSNYNLEEKINFDIINF"
     gene            3722..4927
                     /locus_tag="SF008_001366"
     CDS             3722..4927
                     /locus_tag="SF008_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HEG8233623.1"
                     /translation="MKNLLIIGAGGVSRVATVKCAMNSDTFSKITLASRTKSKCDEIA
                     TFIKERLGVQIETAQIDADDSNAVVELIKKTGAQILLNVALPYQDLSLMDACIKAGID
                     YIDTANYEHPDLAKFEYKEQWARNDKFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKKIRFFMTFGQSYLTHMKCLENVGMLGIKPVI
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(4955..5617)
                     /gene="sodB"
                     /locus_tag="SF008_001367"
     CDS             complement(4955..5617)
                     /gene="sodB"
                     /locus_tag="SF008_001367"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HEG8233624.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQVA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
BASE COUNT         1960 a          722 c          964 g         2073 t
ORIGIN      
        1 ctttttaata ttaatatttc ttatcaaaat atataaaaag gaattaatgc ctatgaaaaa
       61 aataatttta tttttactgt gctttggctt tgcttttgct tgctctgaac attctcatac
      121 cgattttaaa gatcttaata aaaccgagta taattctcaa taaaggataa aatatgaaaa
      181 aaatctttct tatgttttta acggcttttt catttttagg tgctagtgag cttaatattt
      241 actcagcaag acattatgat gctgattttg aaatcataaa aaaattcgaa gaaaaaacag
      301 gtattaaggt caatcatact caagctaaag cttcagaact tattaaaaga ctttctcttg
      361 aaggaagtaa ttcccctgct gatattttca tcacagctga tatttcaaat cttacagaag
      421 ctaaaaattt aggactttta tcccctgttt catcaaaata tttagaagaa tttatacctg
      481 ctcatttaag agataaagat aaagagtggt ttgcgattac aaaaagagca agaattattg
      541 cttacaacaa aaacgcaaat atcgatatta gcaaaatgaa aaattatgaa gatttagcaa
      601 aagctgaatt taaaggagaa attgttatga gaagtgctac agctccttat agcaaaactc
      661 ttttagcatc tattatagct aatgatggaa ataaagaggc taaagcatgg gctaaaggtg
      721 tgcttgaaaa tcttgcgaca aatccaaagg gtggagatag agatcaagcc agacaagtat
      781 ttgcaggcga agctaaattt gcagttatga atacttatta tatagggctt ttaaagaatt
      841 ctaaaaatcc aaaagatgta gaagtgggca attctttggg tattattttt cctaatcaag
      901 acaatagagg aacgcatatt aacattagcg gtattgctat gacaaaatca agtaaaaatc
      961 aagatgcggc taaaaaattt atggaattta tgttaagtcc tgaaattcaa aaaattctta
     1021 ctgatagtaa ttatgaattt cctataagaa atgatgtaga attaagccaa acggtaaaag
     1081 attttggaac tttcaaagaa gatcaaatcc ctgtgagtaa gatagcagaa aatattaaag
     1141 aagcggttaa aatttacgat gaaatcggtt ttagataatg tataaaacct taaaatacta
     1201 taaactcggg gcaattttac ttgccctttt tcttgctttg cctatttttg gtatttttgc
     1261 tgaacttttt tatattttat ttcaaaattt taatacaagt aatttaaccc aattttcatc
     1321 tattaaagaa aatttgagtc atttttttga ttatttattt ttaaaattca tcaaagatac
     1381 ttttataatt agcgtgggag tattgtgttt aagcttgatt ttgggtgtaa gttctgctta
     1441 tttgatcgca aattatgatt tttatttctg taaaatttta gaaaaattac tcattttacc
     1501 cttagccata cctgcttata ttttagcctt tgtttatgtg ggaattatgg attttcaagg
     1561 attttttcac gaaaattttg gctttaggat ggattttttc aatcattatg gtgttatttt
     1621 tgttttggct atttctttat atccttatat ttatttattt gctaaaacag cttttaaaag
     1681 tgaagctaaa gaggcttatg aagtagctaa aatcatgaaa tattctgaat ttagaatttt
     1741 tacacgcgtg gcacttttga gtgcaagacc tgccattttt tctggagctt tattggtttt
     1801 aatggaaact ttgagtgatt atggtgcaag tgcttatttg ggagtggata ctttttcggc
     1861 tggaattttt aaactctggt atgatttgaa tgattcttat tcttctagtg ttttatcggg
     1921 tattttaatg ctttttgtat ttttgattat gtatgtggat tattattata aaaataaaca
     1981 tcattatagt tttaatcaaa atttagctct ttttatcaaa aaaagaaaat taaatcctat
     2041 taaacaaatt ctatcctgta tttattgttt tatgattgct tttgtaggtt ttattttacc
     2101 ttttatttgg ctagtttatt gggggctaaa agatcataag ctttttgaat cgcaatttta
     2161 tattatcagt tttcaaacta taatcttagc tttaatcact gctttaatta ccactttttt
     2221 agcttatttt ttgatgttta gctctaggat agttaaaaat cattttttta atttatttat
     2281 tttaaaaata agttctttgg gttattctat acctgctgct gctttaggga ttagcattat
     2341 agtgcttttt gtatttttgg ataaattttt tcacatgagt ttattgggaa attctttact
     2401 tgttcttgtt tttgcttata taattcgttt tttagcgagt gcaatttatt ctttagaagg
     2461 aggatatagt aaaattcatc taaatattga tgaggcaagt ttaaatttaa gagcgagtta
     2521 ttttatttta ttttttaaaa ttcacacacc tttaatgaaa cattttttat ttttggcttt
     2581 tattattgtt tttattgata cgattaaaga acttccttta agtagaattt tagcgccttt
     2641 tggctttgaa actttaagtg ttaaagcttt ctggtttgca agtgatgaaa gaatttatga
     2701 tgcagctttg ccttccttgt ttatcgtttt tctttcttta atggttgttg tttggatgga
     2761 taaaatcaca aggaaagatg atgttagaaa ttaaaaattt atctaaaaat tttgaaaaaa
     2821 tacaagcttt agaaaatatc aatcttcatg tcaaagaagg agaattttta agcattttag
     2881 gaggtagtgg aagtggaaaa agcacgcttt taaggattat tgctaagctt gaacaagcta
     2941 gttcttatga tttgttttct tgcaaaggtg aagtggcttt gatgtttcaa aattatgctt
     3001 tatttcctca tttaaatgtt gagaaaaaca tactttttgc actttacgat aaaaaagata
     3061 aaaatcaaat tttaaatcat ttgcttaaaa cttttgaaat tgaagattta agatataaaa
     3121 aaatcgatga aatttcagga gggcaagcgc aaagagtggc ttttgctaga gctatagcaa
     3181 gaggatgtca gcttttgctt ttagatgaac ctttttctaa tttggatcaa aatttaaaac
     3241 aggatttaag aagagaattg aaaaaaatga tagaaaatca aggcattacg gctattatgg
     3301 taactcatga tattgaagat gcttattgta tgtctgatca aatcgctttt ttagaaaaag
     3361 gaaaaatttt agctcatgca aatcctaaag agctttattt taagcccgat tttaaaagtg
     3421 cgcaaatttt acctgattta aatatcatag aagaaaaact tgatttagaa gatgaatttt
     3481 ttgcttggat agcttcaaaa aattatattt ttggttatgc agaacttaaa ataggaaatc
     3541 gctttgaggc taaaatttta caaaaagaat ttttaggggc tttttataga cttaagttaa
     3601 gatataaaaa tatagaattt tttatgttat taagctcaaa ttataactta gaagaaaaaa
     3661 taaattttga tattatcaat ttttagttaa aattcctaaa aatcttttaa ggacaaattt
     3721 catgaaaaat cttttaatca taggcgcagg tggagtaagt cgtgtggcta ctgtaaaatg
     3781 cgcaatgaat tctgatactt ttagcaaaat cactttagct agtagaacaa aaagcaaatg
     3841 tgatgaaatc gctactttta tcaaagagcg tttaggggtt caaattgaaa cagcgcaaat
     3901 tgatgctgat gatagcaatg cggttgtaga acttatcaag aaaacaggag cgcaaatttt
     3961 actcaatgtt gctttgcctt atcaagattt gagtttaatg gatgcttgta taaaagcagg
     4021 gattgattat atagatacgg caaattatga acatcctgat ttagctaaat ttgaatacaa
     4081 agagcaatgg gcgagaaatg ataagtttaa acaagcagga attttaggac ttttaggaag
     4141 tggatttgat cctggtgtaa ctaatgtttt ttgtgcttat gcacagcaaa atttatttga
     4201 tgaaatttct tatatagata ttttagattg caatgcaggt gatcatggct atgcttttgc
     4261 gacgaatttt aaccctgaaa tcaatctgcg tgaggtttct gctaaagggc gttattggga
     4321 aaatggcaag tggatagaaa cgcagcctat ggaaataaaa atggagtggg attatccaga
     4381 agtaggagtg aaagatagct atttgcttta tcatgaagaa cttgaaagct tggtaaaaaa
     4441 tatcaaaggt ttaaaaaaaa tacgcttttt tatgactttt ggacaaagtt atttaactca
     4501 catgaaatgt cttgaaaatg ttggaatgct agggattaaa cctgtgatac accaaggtaa
     4561 agaaatcatt cctatagaat ttttaaaaac cttgcttcct gatcctgcaa gtttaggacc
     4621 acgcactaaa ggttatacca atataggttg tgtgattcgt ggtaaaaaag atggaaaaga
     4681 caaacaagtt tatatttata atgtttgcaa tcatgaagaa tgttacaaag aaactggcgc
     4741 gcaagctgtg agctatacta caggtgttcc tgctatgata ggtacgaaat taatcgctaa
     4801 aggaatttgg caaggaaaag gcgtgtttaa tatggaagaa tttgacgcta agccttttat
     4861 ggaagagctg aattctcaag gacttccttg gaagattatc gaaatgactc caagcttagg
     4921 agagtaaaaa aggcatcgtt ttgatgcctt taaattattt tacagggtga agttcatttg
     4981 cataaaagct aactgatccc atgccttctt ttaaagccca ttcgtaagct tttgcaacaa
     5041 attcccagtt aatatgagca tagaattttt ctaaataagc agggcgtgca ttacgatgat
     5101 ctacataata agcatgttcc caaacatcta caacaagtaa aggaacttta tcttcagtaa
     5161 ttggtgtagc tgcgtttgaa gtacctacaa attctagttt ttgattttta gtattataaa
     5221 ctaaccaaaa ccatcctgaa ccaaaaactc ctgtagcacc tttgatgaat tcagctttga
     5281 aattttctaa agatccaaat tctttttcta gtgccacttg taaattagca tctatacttt
     5341 gacatgaacc gccacagcca cagcctgtac ttggcttaat gcaatcaaaa taaaaatcat
     5401 gattataaac ttgagctgcg ttattaaata cgcccccatt tgaagttttg ataatactta
     5461 caagatcttt acctgcaaat tcagtatctt taataagatt atttagattt gtaacataag
     5521 tattgtgatg ttttccatga tgatagctaa aagtttcagc actcaaaaaa tcaccaaaag
     5581 cattggtatc ataaggtaat tttcttaatt caaacataat ttctccttta tttttagttt
     5641 gatattgaaa atattaccat aataatatta aaaagagtaa aaatatctta aaagcttagt
     5701 gggtaaaatt tctatttat
//
LOCUS       DARGEY010000087         5645 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.087, whole genome shotgun sequence.
ACCESSION   DARGEY010000087 DARGEY010000000
VERSION     DARGEY010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5645)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5645)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5645
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.087"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            30..676
                     /locus_tag="SF008_001368"
                     /pseudo
     CDS             30..676
                     /locus_tag="SF008_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779653.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssG"
     gene            827..2227
                     /locus_tag="SF008_001369"
                     /pseudo
     CDS             827..2227
                     /locus_tag="SF008_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049860.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2381..2512
                     /locus_tag="SF008_001370"
                     /pseudo
     CDS             2381..2512
                     /locus_tag="SF008_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004087681.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VgrG protein"
     gene            2878..3459
                     /locus_tag="SF008_001371"
     CDS             2878..3459
                     /locus_tag="SF008_001371"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233625.1"
                     /translation="MQNIIGFKNVNVGAEYLENTLLSKDTNVGLSNTLNVGISNEVNI
                     GQNHEEKIGNDKRVIINNNLEQDIKNDFIQRIGHNKNETIKGSYVLQTNQSIKFYSKQ
                     DLSIETNEYFKAEADDSISFKAKKNCSFTADNVNTMANQESVLTAQKQIVSRVGNTTI
                     TQTKDKIILQVGTTQVIIDSKGLRVKGGDLRAD"
     gene            3525..4458
                     /locus_tag="SF008_001372"
                     /pseudo
     CDS             3525..4458
                     /locus_tag="SF008_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
     gene            4636..4968
                     /locus_tag="SF008_001373"
     CDS             4636..4968
                     /locus_tag="SF008_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233626.1"
                     /translation="MLSYEYKNLVENGNLKVDAKYKVTLPPNLIAVLEYDKSEFNGVN
                     LRNFINDLEFELEHIEMELYDDPADFEGGDYYNEDSDCDEDYTVEDWVEDQVSDIKDF
                     LYALKDFK"
     gene            4965..>5645
                     /locus_tag="SF008_001374"
     CDS             4965..>5645
                     /locus_tag="SF008_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233627.1"
                     /translation="MKQTLSSNRVSFYLFSTKTFSDEKYLNAWSLKGERLNAKDWFEF
                     KQANKDKFYNKHLENTLKAMQEFKAYFSVDQFEGINLHGDDEWLDFLPSNYTQFYNRL
                     CKDKSKYILHRYYQKNDLTEIGMLKNLSPNFPFWDEKGENFSQNQIDIFIEKDNLAPY
                     FNKYDIYFNSSLELSFNFSDESLEYLINNYNHRINHTFTPKSQDEIQKELNLSKEDKI
                     ILELENMFL"
BASE COUNT         2292 a          712 c          787 g         1854 t
ORIGIN      
        1 atataagttt ttattattgt taaatataat ctctattctt tgatttcttt aatcattatt
       61 tgctttggat attttttgat gtaataagct taaaaaatta tccacgatct tttaatgaaa
      121 attttaaaga ttctatttca aaaattttat ttagcatgtt gggaattaaa gaatacgata
      181 ttgcaaaaaa atatttacca tttgcacctt tactactaag tttaagacga cctaaaacac
      241 acattgaaag agttttacaa gtcaatttta aacttaagga taaattatca attattgaaa
      301 atttacccca tcaaatttta atttcaaatt cgcaaaaaaa taacttagga ataaagaaca
      361 atattttagg aaataatttt atattgggcg ataaatttat ctcttatcaa aacaaaatag
      421 cgatctatat aaaggatatt tcatatcaag aagcggttaa atttatgcca atggaaccaa
      481 acacgatgat ttaaaaaata gcataatgtt tttaacaaat aatgaatttt gtgttgattt
      541 atatcttaaa atcaactatt cttcagaaat gaagtttgtg ttaggagaag aaaatactgc
      601 caaacttggt tgggcaaaaa ttttaggtaa tacgcaaaaa aaatatacaa tagtatatat
      661 gaaactatgt gaataagctg acacaaaaat atgtttaaaa aaatcacaac ctctcttcac
      721 ccataaacca taccctaaaa taaactttat tttacccact ttatgctaaa ataaatcaca
      781 taagcttata ggctattaat catcaacaaa cccaaaagga tcatcaatgt cccttaattc
      841 ttacatgagt cttaatatat caaattctac ttcaaatccc ctacccttta aaatcactaa
      901 agccctcatc aaagaaagtc ttgaagagct tttttctata gaatgtgaag gcttttttga
      961 aagtttagaa caagatttat tttctttaaa tactttaacc aatgcttcat ctcatccaag
     1021 cacccctaca acttttaatt ttcatcctaa tgttttaatc gatcaagaag ctattttaag
     1081 tatccataat ccttatgaga ataatacctt aaactttgat aacaatgaag taaaaaacta
     1141 taagggaatt atcacttata taaaatatct aggtattaat catgaaagtg ctttaaatat
     1201 taatgatagc acttcaaata ctaagcaaat acaatacaag catttttttt cttttaagct
     1261 tcaatcagtc ttgataagac tttctttaaa taaagccaat cgtatttata ctcatactaa
     1321 tattatagaa gtgattaaac aaacccttgg tttttatcaa gatatcttac ataaagaaat
     1381 tgattattct aatatacatt ttaattatga agaacaagaa ctcatctctc aatacaatga
     1441 aagtgattta gactttatta caagattaag ccataataat ggaatctttt tttatgaaga
     1501 tgagaacact atttattttt gtgatgtgta taaaaatgta aaaaataaag aaattgagta
     1561 taatcctaat gttaataata ttttaaatca agcttgtatt tcttctattt ataaagagca
     1621 aagcttaaga actaattctt ttacacattc tagtattaat gccaatactc ctttaaatct
     1681 tttatcttta cactctagta aagttcctta tgaacaagaa cttaataaca aagcttgtta
     1741 taatgaacat ttttatgaga gtgaatattc ttttacaaaa agcattgatt taaagactaa
     1801 gccttctctt aaagaaaaaa gagccttagt attaaatgaa agcttactag caaaaagtaa
     1861 tatttatcat cttaacttag gagattttat cactttaaat tataaggagt ttaatcatca
     1921 agaagaaata aaaaatcaag atgaagaaaa acaagataaa gcttctttgc ttaaagactt
     1981 tattattatc gctaatactc aaatcttaat tgatgatgcc atcttagcta attctattaa
     2041 tactaatgat catttaaatt taaataaatc ttattctaat actttaactt tactaaaaaa
     2101 gaatattatc tttactccaa gttttaaagc taaacctaaa gctcctaata gcactcaagg
     2161 tattgttata ggagagagta aggatataga aagtgagagg aatactattt atactgatga
     2221 gcatggaagg gttaaggtaa ggattaatct ttatgccaat caagaagaat tagataatga
     2281 tacttttatt gcaaatgata tagatataaa ttcttctaat ttatcaagca atacttataa
     2341 atcttatcat cacactcctt ttttaagagt agcttctcat atagcaagta atcattcagg
     2401 tttttttcat actccaagaa taggagatga agtgattatt tcttttttag atgatgatat
     2461 agataaacct tatgtaagtg gaagtttgta taatggggct acaacaatgc cccaatataa
     2521 ttatccaaga tataaaagag aaatcgctac aaatgcattg agttatttaa gcgtagttcc
     2581 tgctatgatt gataaaggtt tagatacatt aaaacttcaa gaaaatactg attatgaatt
     2641 aagctctata aacaatcatt atcttacttt ggctaattcc acagtaggag tggataacac
     2701 caatgcaaga gtaaggaatg aaattaccct aaaaacgaca aagacaaaga agaaatttat
     2761 atcctagcac aaaaagatta taaagaagaa ataggtaata attatgagca aaccataaaa
     2821 aataataaaa cttcagaagt gggagcctta tataccgaat ttattacttt aggacatatg
     2881 caaaatatca taggttttaa aaatgtcaat gtaggagctg aatatttaga aaatacccta
     2941 ctttctaaag atactaatgt gggcttaagt aatactttaa atgtaggaat cagcaatgaa
     3001 gtcaatatcg gacaaaacca cgaagaaaag ataggaaacg acaaaagagt aataatcaat
     3061 aacaatctag agcaagatat caaaaatgat tttatccaaa gaataggaca taacaaaaat
     3121 gaaaccataa aaggttctta tgtgcttcaa accaatcaaa gtataaaatt ttattccaaa
     3181 caagatctaa gcatagaaac aaatgagtat ttcaaagctg aagctgatga ttctattagt
     3241 tttaaagcca agaaaaattg ctcttttaca gctgataatg taaatactat ggcaaatcaa
     3301 gaaagtgttt taacagcaca aaaacaaatc gtttctaggg taggaaatac aactattaca
     3361 caaacaaaag ataaaattat actccaagta ggaacaacac aagtgattat agatagcaaa
     3421 ggtttaagag taaaaggagg tgatttaaga gcggattaaa agcaattttc ttaaaattaa
     3481 aactaaaatc ataaaaaacc caatttacaa agaaaggaaa aacaatgaaa accttagaag
     3541 atatcaaagc tatgagctat caagaaaaag atgaattaga agatttagtt cttgaaatta
     3601 tagataataa tgatttagtt aagctaaaag atattttaaa ggattatcct gtaaaaatat
     3661 cttgttatga gcttaatatt aaagatgagg atggagactt tcctttattt gatcctttta
     3721 atctaataat aagagctgca catgcttgtg aagaaaacaa taatgatttt tctattttag
     3781 attatttatt tgatgagtat ggattaagtt taaaagatcc taaatataac tttgctgaaa
     3841 tatatcaaag aagctaatga taaatatatc ttgatggaag aagtagaaga tgatccttgt
     3901 atttatcaaa acgctctaat ctatgattat atattaagtg ctgataatcc aaattctcaa
     3961 atcattaagt atctagtcaa tcgtggggct aaatttgaag tgcatgatga agatacaaat
     4021 tggaccccta tgcatttttg ggctagacgc aataattatg aattattaga actagctatt
     4081 aaaggaggag ctaatgtaga tatgcaaact tttagtaaat taagaaaatg caacaatgaa
     4141 acccttttat ttgaagctgt aagcgaacct gaaacctata gggttacaca gcttttaatt
     4201 gaacttggag ctaatgtgaa ttttgctacc ccaaccaccc ctttagatga tgcaaaagga
     4261 tctagaaata aaaagctttt aaaagatgca ggagcaatga cttcagaaca aatcagaaag
     4321 aaatttaatt taccagcata tgattcttct cattgcgaaa ttgacggaaa aactgatatg
     4381 gatttattag gtaaatatca tgatgaatat tccaaacttt taaacgatgc tataaaaaag
     4441 gctaaagaaa gtgaatgagg gaatagaaat tcactttgct aaaataaatt ataaggaaag
     4501 ataatgaaaa ataaaaaatt attggatgat gaatatatac aagaagtgtt taaatactat
     4561 cttaaaaatg ataattattt aaaagatgct ttatatggtt taaaaaaata cgaacgaaga
     4621 gcttttataa gtagcatttt aagctatgaa tataaaaatt tagtagaaaa tggcaattta
     4681 aaagttgatg caaaatataa agttaccttg ccgcctaatc ttattgctgt tttagaatat
     4741 gataaaagtg aatttaatgg cgtaaatctt cgaaatttta taaatgattt ggaatttgaa
     4801 ttagaacata tagaaatgga actttatgac gatcctgctg actttgaagg gggagattat
     4861 tataatgaag atagcgattg tgatgaagat tatacagtag aagattgggt agaagatcaa
     4921 gtaagtgata ttaaagactt tttatatgct ttaaaagatt ttaaatgaaa caaacattaa
     4981 gctctaatcg agtaagcttt tatctttttt ctactaaaac ttttagtgat gaaaaatatc
     5041 ttaatgcttg gagcttaaaa ggcgagcgtt taaatgccaa agattggttt gaatttaaac
     5101 aagccaataa agacaaattt tataataagc atttagaaaa taccttaaaa gctatgcaag
     5161 agtttaaagc ttattttagt gttgatcaat ttgaaggcat aaatctacat ggtgatgatg
     5221 aatggcttga ttttttgcct tcaaattata ctcaatttta taatcgttta tgtaaggata
     5281 aaagtaaata tattttacat cgatattatc aaaaaaatga tttgacagag attggtatgc
     5341 ttaaaaatct ttctcctaat tttccttttt gggatgaaaa aggagaaaat ttttctcaaa
     5401 atcaaattga tatttttata gaaaaagata atttagcacc ctactttaat aaatatgata
     5461 tttattttaa ttcttcactt gagctaagct ttaattttag tgatgaaagc ttagaatatt
     5521 taattaacaa ttataatcac agaatcaatc atacttttac tccaaaaagt caagatgaga
     5581 tacaaaaaga attaaattta agcaaagaag ataaaatcat tttagaactt gaaaatatgt
     5641 tttta
//
LOCUS       DARGEY010000088         5583 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.088, whole genome shotgun sequence.
ACCESSION   DARGEY010000088 DARGEY010000000
VERSION     DARGEY010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5583
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.088"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(21..917)
                     /gene="sppA"
                     /locus_tag="SF008_001375"
     CDS             complement(21..917)
                     /gene="sppA"
                     /locus_tag="SF008_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HEG8233628.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIVIWILMPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVIDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDELSNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQTS
                     SLISKSLIEIAYKTNSSFINAR"
     gene            complement(905..2134)
                     /locus_tag="SF008_001376"
     CDS             complement(905..2134)
                     /locus_tag="SF008_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEG8233629.1"
                     /translation="MFIVTARYLFLCDEDFTILENQAFVFEDKILELGELDNLRKKYP
                     KAKIIKTPKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSMLNAQAKE
                     ELILQSIKKMQKSGIGTIGEISSFGSDLDPCLKASHKGMRIVFFNEILGTNENQVEDK
                     KQEFLKRFENSLKFKNDFFIPAISIHSPYSTHPSLAHFALDLAKKQNLLVSTHFLESK
                     AENIWLRESKGSFKKWLENFTLHPKPLYTPKDFVKLFKGVRTLFTHCVYLKEYEWLDK
                     NLHSITHCAFSNRLLSQKSLDLKTALKSGLNIHLGTDGLSSNISLSLLDEMRANLLIH
                     KNFDLLELASKLLQMVTLYPARALNLNLGELKKGKIADFNVFELGECDKKQAPLQFIL
                     NAKEVDKLFIKGKECKF"
     gene            2225..2704
                     /gene="aroQ"
                     /locus_tag="SF008_001377"
     CDS             2225..2704
                     /gene="aroQ"
                     /locus_tag="SF008_001377"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HEG8233630.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGTIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            2707..3180
                     /gene="folK"
                     /locus_tag="SF008_001378"
     CDS             2707..3180
                     /gene="folK"
                     /locus_tag="SF008_001378"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEG8233631.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FDMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            3190..4644
                     /gene="flhF"
                     /locus_tag="SF008_001379"
     CDS             3190..4644
                     /gene="flhF"
                     /locus_tag="SF008_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HEG8233632.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDEDVVLD
                     FSNTRLNTNLNTVKNNDLAKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNYNKKIENFEKQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPP
                     EFASIYKQAKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVE
                     SDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQY
                     AKMMKLPIIDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAE
                     IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSF
                     FSIGQEVPDDLEVANSDFLVHCILEGFNKGKNNE"
     gene            4637..5503
                     /gene="flhG"
                     /locus_tag="SF008_001380"
     CDS             4637..5503
                     /gene="flhG"
                     /locus_tag="SF008_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HEG8233633.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDEIKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
BASE COUNT         2052 a          869 c          851 g         1811 t
ORIGIN      
        1 aataaaaata tttatatatt ttatctagcg tttataaaac tgctattagt tttataagcg
       61 atttcgatta agcttttact tatcaagctt gatgtttgtc cttctaggcg gttaagaaat
      121 ttatcaatct tatcttcttc tttccaaaca ggatttgaaa cattagcaag tttttcaagc
      181 tcctttttag cattttcata attactaagc tcatctataa gaccaagctc cttagccttg
      241 gcagctaaaa acactcttgc atttgcccat tgatcttttt tattaagatc taatgctctt
      301 tccttggcaa caaaacctgt aaaaagatca taactttgat caattaaacc ctgtaaaaaa
      361 tttctttcat tctcattcca agctcttgca aaagttccag cacttttaaa ttcacccgct
      421 tgaatagttt gttctttaat accgagttta ttagccaatc cgcttaaatc agctccttgc
      481 ataatcacac cgatagagcc tataaaactt gctggattgg ctaaaatttt attagctcca
      541 actcctgcta aataacttcc gcttgccata gttccgcttg cataaacaag cacaggcttt
      601 ttaattttta aatcctttat agctagagct agttccatac taggagcaaa agctccacca
      661 ggagagtcta taacaaaaag cactccttta atattgctat catttttagc attgataatt
      721 ttttccaaaa ccgcagagct gtcaaaaatt tcacccttta aatcaatgcg ttctaaattt
      781 gcaagattgg agcttgaatt tgcactaggc attaaaatcc atataacaat caacaataaa
      841 acaaaggttt taaaataagt attgataaat tttataccgc atcctaaagc cttaaaaaat
      901 gattttaaaa tttgcattct tttcctttta taaataattt atctacttcc ttagcattta
      961 aaataaactg caaaggagct tgctttttat cacattctcc tagctcaaat acgttaaaat
     1021 cagcaatttt acctttttta agctctccta aatttaaatt taaagccctt gcaggataaa
     1081 gtgttaccat ttgcaaaagc ttagaggcta actctaataa atcaaaattc ttatgtataa
     1141 gcaaattcgc gcgcatttca tcaagtaaag acaatgaaat atttgagcta agtccatcgg
     1201 ttcctaaatg aatatttaat ccacttttta aagccgtttt taaatctaag cttttttgac
     1261 ttaaaaggcg atttgaaaat gcacaatgtg taatagaatg taaattttta tctaaccatt
     1321 catattcttt tagataaaca caatgcgtaa aaagagtcct tactccttta aaaagtttaa
     1381 caaaatcctt tggtgtataa agaggcttag gatgaagtgt gaaattttca agccattttt
     1441 taaaactccc tttagactct ctaagccaga tattttcagc cttactttct aaaaaatgcg
     1501 tactaactag taaattttgc tttttagcta aatcaagagc aaaatgagcc aaactaggat
     1561 gagttgaata aggagaatga atcgaaattg ccgggataaa aaaatcattt ttaaatttca
     1621 aagaattttc aaatcttttt aaaaattctt gttttttatc ttcaacttga ttttcatttg
     1681 tacccaaaat ttcattaaaa aatactatac gcataccctt gtgactagcc tttaagcaag
     1741 gatctaaatc actcccaaaa cttgaaattt cacctatagt gcctataccg cttttttgca
     1801 tttttttaat gctttgaagt attaattctt ctttggcctg tgcatttaac atggaacgag
     1861 aatttataac acttttaagc caaattaaaa attctccaaa atgtaaagtt gttgaatttg
     1921 cactaaattc taagtgtgtg tgaggattta taaaagcagg taaaataacc gaatttttag
     1981 gtgttttgat gattttagcc ttgggatatt tttttcttaa attatccaat tcacccaatt
     2041 ctaaaatttt atcttcaaaa acaaaggctt gattttctag tatcgtaaaa tcttcatcgc
     2101 ataaaaaaag atatcttgca gtaactataa acacgatttt cctttcaaaa attacattgt
     2161 agcaaaaatt tatttttaaa atgttataat aaaaggttaa aaataaattt ttaaggttaa
     2221 atccatgaaa ataatgatta tccaaggccc aaatgttaat atgcttggcg taagagaagt
     2281 gggaatttat ggtgctatga aaatggaaga aattcatgag caaatgaaac ttgcagcatc
     2341 tcaaaacaat gtagaacttg actttttcca aagtaatttt gaaggtgaaa tcgtagataa
     2401 aattcaagaa tgtcttggaa cagttgatgg aattattatc aacgcagcag gctatactca
     2461 tacttcagta gctattcgcg atgctattgc agcagtagct ttgcctacaa ttgaagtaca
     2521 tattagcaat gtttatcgca gagaagaatt tcgtcaaaaa agtcttatag cgcctgtatg
     2581 ttctggaact attgttggtt ttggtccttt tggctatcac ttggctttaa tgggtataat
     2641 tcaaatttgc gaacaaataa aaaatttgcg tgcgatgcaa caagcacaac aaacgaataa
     2701 ataataatgc taaaaattca aggagtaaaa cactttgaaa aaagtcgttt ttttcctttt
     2761 tttagtcaaa atatacgatc ttttaaatat ttagctctta taggcttagg aagcaatata
     2821 gagcccgaaa aaaaaagatt tgatatgctt tttcgagtaa tgatggatga taaaagattt
     2881 aaaattttat ccacatctcc tatgttgata aatgaagcct ttggttttaa agagcaaaaa
     2941 gattttacca atgctgttat gttgatacaa actaatttgc atgcacgagc acttttgaaa
     3001 gttttacttt attatgaagt aaaatttaaa cgcaagagaa ctttcaaaaa cgctcctaga
     3061 acgcttgatt tagatctttt atacttttca caaaaagtca agcgtgataa gtggtgtgag
     3121 gtgcctcata aaggggctaa agaaagagtg agtgtaattt tgcctttagg catgatataa
     3181 ggaatataaa tgggacaact tatacatact tttaccgttg aagatacaga acaaattata
     3241 cccaaagtaa aagaagatta cggagataaa gctttaatta taacaaataa acaaattcgt
     3301 cctaaaacct taaatcgcag tgcgctttat gaggttatgg tagccataga agaaagcgac
     3361 tatgaagaac acttaaaaaa acaaggaaaa tctttacctg caaaaaaaag ctcgccaaaa
     3421 ccatcctcta cctctcttgc agaagaaaaa attagatctc aaatccctca agaagatgaa
     3481 gatgtagtct tggatttctc aaacactcgc ttaaatacaa atttaaacac tgtaaaaaac
     3541 aatgacttag ctaaaaaaac ctatcaagat tttccacaaa acaaaatcaa ccctcatcaa
     3601 aataagactc taggctttga tgatttcaaa gaaaaactaa gtgaagttag caatgaaatt
     3661 tctaaagtca caaacacacc tttagaaaat tacaccccta atccaaatta taataaaaaa
     3721 atagaaaatt ttgaaaagca atttgaaaaa caaatcaaca agcttaatga taaaatagat
     3781 cttcttgcag atatgatgtg ggacgataaa gctgaagcta gaaaaaatct tatgatacct
     3841 cctgaatttg caagtattta taaacaagcc aaagaaagtg gaatgcttga aaatcatcta
     3901 gaagcgatta tgaaagcaac tatagaaaat atgccagctg ctatgaaaac caacaaagat
     3961 gcggttcaaa gatattttca ctcactttta agaaatatct tgccttgtcg tgttgaaagc
     4021 gatataaaaa aacaaaaaat catgatgcta gtaggcccaa caggagtcgg aaaaacaaca
     4081 accttagcta agttagcttt tcgctatgct tatggagata agcgttataa aacaggtatt
     4141 attacgcttg atacttatag aatcggtgca gttgagcaac tttttcagta tgcaaaaatg
     4201 atgaaacttc ctattattga tagcatagaa ccaaaggatt tagatgaagc gataaaaagc
     4261 ttaaataatt gcgaagtaat tttagttgat actataggaa attcacaata cgatcaaagc
     4321 aaacttgcta aaactaaaga atttttaatg cactcaaatg cagaaattga tgtaaattta
     4381 gtggtttctg caaacaccaa acatgaagat ttaatggaaa tttataaaaa tttttcattc
     4441 ttaaatattg atactttgat tattactaaa tttgatgaaa caaaggtttt tggaaatatc
     4501 ttctctcttg tttatgaaac aaatattcct ctaagctttt tctctatagg acaagaagtg
     4561 ccagatgatt tagaagtagc caatagtgat tttctagttc attgtatttt agaagggttt
     4621 aacaaaggaa aaaataatga ataaccaagc aaataaactt cgcaatctca tgagtcaaaa
     4681 tggaaccaaa aaatcccaaa acactcattt tatagctatt acaagtggaa aaggtggcgt
     4741 tggaaaaagt acgattagcg cgaatctagc caatgtttta gcaaataatg gctataaagt
     4801 tgggcttttt gatgctgata ttggcttggc aaatttggat gtcattttaa atgtacgcat
     4861 acaaaaaaat ctcttgcatg ttttacgcgg agaatgctcc ttggaagaca ttttaataga
     4921 agttaagcca aatttatggc tcatcccagg cgaaagtgga gatgagattt taaaatataa
     4981 tgataaaaat atttacgaga gatttttaaa tcaagcaagt attttagatg aacttgattt
     5041 tcttattatc gacacaggcg cgggtattgg tggaaatatt ttaaattttt tagaaatggc
     5101 tgatgaagtt atagtagtaa ctgttcctga tcctgcagca atcactgatg cgtatgcaac
     5161 cataaaaaca acttctaaga caaaagaaaa tttactaatg ctctttaatg ttgtaaaaaa
     5221 tgaaaatgaa gctttaaaag tttttgaaaa tattaaaaaa gttgcagatg caaacattaa
     5281 aaatccttta aatttagaat tcttaggtca tttaagcgct tctaaagatg taagtggtag
     5341 tattaaaaaa agaactttat ttagcgatga aaacacagcc tcaagtgatg agattaaagc
     5401 cctagcttcc aagcttttat atagattgga acggaaagtg cttgataatg tttcaaatcg
     5461 tagtttttca agttttttta gaaaaattat tgaaagattt tagcaataaa gagaagagat
     5521 tatgaggcca gaaaattacg tagcattttt cactgtttgt ggatttttta taggacttgc
     5581 att
//
LOCUS       DARGEY010000089         5500 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.089, whole genome shotgun sequence.
ACCESSION   DARGEY010000089 DARGEY010000000
VERSION     DARGEY010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5500
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.089"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1076
                     /locus_tag="SF008_001381"
     CDS             <1..1076
                     /locus_tag="SF008_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEG8233634.1"
                     /translation="HIGFKDFAQNIIIKKENPKFRYSMLEINPENVSEDSAFYLGVNA
                     LTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEEDLKTLSQSSSLNIYSLY
                     AKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLDVLAKEFDTQE
                     TLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESRFIPTAISVSY
                     ALGMMQFMPFLANHIGEKELKIPNFDQDFMFKPEIAYYFGNYHLNYLESRLKSPLFVA
                     YAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVLANYIVYRHLLN
                     DSIKISDIFENLIQNKANDLSKS"
     gene            complement(973..1458)
                     /locus_tag="SF008_001382"
     CDS             complement(973..1458)
                     /locus_tag="SF008_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233635.1"
                     /translation="MKIYSVILGAFLLGACSLKDQAIVDTNLKSQTLMFTQKYKITQD
                     KINAIITMSYLNPILDKTSKDDVLALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLK
                     YIIQNNYTDYFKASLPSVKEEIRLVAKICLDHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
     gene            1554..2045
                     /gene="mobB"
                     /locus_tag="SF008_001383"
     CDS             1554..2045
                     /gene="mobB"
                     /locus_tag="SF008_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HEG8233636.1"
                     /translation="MKQLIIAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLSPDFDICLVEGLKT
                     LDLPRISVFCKEIDESYFIFSNAIASYEKISHPYLTWLDLNDIQAICQYILKNAKNLQ
                     GEL"
     gene            2047..2889
                     /locus_tag="SF008_001384"
     CDS             2047..2889
                     /locus_tag="SF008_001384"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HEG8233637.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DEIITKTLSQCSSIKAIISEEKDEILTLNERANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLKMNEKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKGGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNRSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            2882..3079
                     /locus_tag="SF008_001385"
     CDS             2882..3079
                     /locus_tag="SF008_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233638.1"
                     /translation="MNEVRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            3089..4975
                     /gene="metG"
                     /locus_tag="SF008_001386"
     CDS             3089..4975
                     /gene="metG"
                     /locus_tag="SF008_001386"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEG8233639.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFVK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKQTRILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFVQNGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYVSSLDFQNKGENAKFWPAHVHLVGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDIYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNISKEGVLKFHNVELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWNLIKENKHEQANALVALCANILAKT
                     SLLLSPTLPKSCQKVALALNFEISSTNYAKMILDNKLLDFKANPCEALFPKVEKALLK
                     QEIKEEPKKEESPKIKIDDFAKIEIKVAKVLDCQNIEGSEKLLKFQLELDDKEIRQVL
                     SGIAKYYKASDLIGKQVCIISNLKKAKIFGHESDGMILSAKSGDKLVLITPEQLVQNG
                     SLVG"
     gene            4979..>5500
                     /locus_tag="SF008_001387"
     CDS             4979..>5500
                     /locus_tag="SF008_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233640.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFFNNDK
                     KEITQAVKKGAYAIITENDITIEDKDIFYFRVENLEQALVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFADFEKLIKAKKGEIFCYCEENYLNKLCAYSHSLKDANF
                     TLLSRSSFFFTTLI"
BASE COUNT         2052 a          792 c          858 g         1798 t
ORIGIN      
        1 accacattgg ttttaaagat tttgcacaaa atattattat taaaaaagaa aatccaaaat
       61 ttagatattc tatgctagaa ataaatcctg aaaatgtaag tgaagattct gctttctatt
      121 taggagtcaa tgccttaact tatgataaaa cagagcttgc ttatgacttt tttaaaaagg
      181 cggcacaaag ttttaaatcg caaagtaata aagacaatgc tatattttgg atgtggttga
      241 ttaaaaacaa tgaagaagat ttaaaaactt tatcgcaaag ttcttcttta aatatttata
      301 gtctttacgc aaaagaactt accaacacac cttttccaaa gatagaaagc cttaatccaa
      361 gcaagaaaaa aaataatttt aatatgcaag atccttttgc ttggcaaaaa ataaacaaac
      421 aaattcgcga tgctaacgca agtcaactag atgtcttggc aaaagaattt gacacacaag
      481 aaaccttgcc tatttatgct tacatattag aacgcaaaaa taattttaaa aaacattatt
      541 ttataatgcc ttattatgac aatataaaag actataacaa aacaagacaa gctttaattt
      601 tggctattgc cagacaagaa agtcgtttta ttccaactgc tatttcagtt tcttatgctt
      661 taggcatgat gcaatttatg ccatttttgg ccaatcacat aggggaaaaa gaattaaaaa
      721 ttccaaattt cgatcaagat tttatgttta aacctgaaat agcatattac tttggaaact
      781 atcatctaaa ttaccttgaa tcacgtttaa aatctccact ttttgtcgct tatgcttata
      841 atggcggtat aggatttact aaccgtatgc ttgcaagaaa tgatatgttt aagacaggca
      901 aatttgaacc tttcttgtct atggaactag ttccttatca agaaagccga atttacggaa
      961 aaaaagttct agctaattat attgtgtatc gacatcttct gaacgatagt ataaagattt
     1021 cggatatttt tgaaaattta attcaaaaca aggcaaatga tctaagcaaa tcttagctac
     1081 aagcctaatc tcttccttga cactaggaag agatgcttta aaataatcag tatagttgtt
     1141 ttgtattata tattttaaat actcatcatc caatttttca atattggctt ttttattatt
     1201 gataaaaact tctaaatttt gaatttttaa tgtatttgga gtaaaagata aagctaatac
     1261 atcatcttta cttgtcttgt ctagaattgg gtttaaataa gacatagtta taatggcatt
     1321 aatcttatct tgtgtgattt tgtatttttg agtaaacatt aaagtttgag attttaaatt
     1381 tgtatccaca atcgcctgat cttttaaaga acaagctcca agcaaaaaag cacctaaaat
     1441 tacactataa attttcattc tttttccata ttttttagta ttattgtagc cttttaaccc
     1501 tattttttgg tttaaaaaga tataattttg caaaaaaatt aagagtatat tttatgaaac
     1561 aacttattat agcttttagc gggccttcaa attcaggaaa aactacactc ataaccaaaa
     1621 tagctgataa ttttttgcaa caaaatttaa aagttttaat cattaaacat gatcctgccg
     1681 ataaagctca atttgatttt aacggtaaag atagttttaa attttttcaa agtggagctg
     1741 aagtcatggt tttaagccct acaagaacaa cttttttttc tcatgaaaat agagatattt
     1801 taaaagcttt aaaattaagc cctgattttg acatttgttt ggttgaagga ttaaaaactc
     1861 ttgatttacc acgcattagc gtattttgca aagaaattga tgaaagttat tttatttttt
     1921 caaacgccat tgcaagctat gaaaaaattt ctcaccctta tcttacttgg cttgatttaa
     1981 acgatataca agctatttgc caatacatac ttaaaaatgc taaaaattta caaggagaat
     2041 tataaaatgc aagaagtgat ttcttatata caaaaagcgg ttttagaaat ttctaacgct
     2101 ttaaaatttc ccgatacaag ctacagtcaa aatcaaaatt ttacaggcga tacccaactc
     2161 aaatttgatg ttttaagcga tgaaatcatc acaaaaactc taagtcaatg ttcaagtatt
     2221 aaagccatca taagtgaaga aaaagacgaa attttaacgc ttaacgagag ggcaaatttt
     2281 atcgtagctt atgatccttt agacggttct agcttaatgg atgttaattt tgccataggt
     2341 tctatttttg ctatctatga agaaaaagca agtgctaaaa atttaagagc tgcgctttat
     2401 agtatgtatg gagcgcgatt agaacttgtg atttgcaaag atcagccaaa actttatcgc
     2461 ttaaatgcaa ataatgaatt tatttttata aaagatctta aaatgaatga aaaaggcaag
     2521 attaatgcta caggcggaac gcaaaaattt tgggaagaaa aacacgctaa atttatcaaa
     2581 agtctttttg atgaaggcta tcgcttaaga tattctggag ccatggtaag cgatatcaat
     2641 caaattttat taaaaggggg tggcattttt agctatcctg caacacaaga tgcgcctaat
     2701 ggcaaacttc gtgccttttt tgaagtcttt cctctagcct ttatcataga aaaagcaggc
     2761 ggaaaaacta caaatggaaa aaaccgctct ttgcttgaac ttgaatttga taaaatccat
     2821 gcgacaactc cttgtttttt tggctcagaa tatgaaattt caaaactttt aaaggcttac
     2881 aatgaatgaa gttagagatg aatttgagca agatatggat aaaaaaaaag aaattttact
     2941 ttcatgtcaa aactcaaaaa acctaaactc ttgttataat tgcgatgaaa tttttaactg
     3001 ccaaactaga aaaaattatg ttgatgcagt ctataacagt atgtctaagg gtaaaaccga
     3061 aggcggattt gacttttaaa ggaaaaaaat gcgttatatt acaacaccaa tttattatgt
     3121 aaatgatgtg cctcatttag gtcatgctta tactaccatc atagccgata ctttagcaag
     3181 attttatcgt ttgcaaggac atgaaacaag atttctaaca ggaacagatg agcatggaca
     3241 aaaaatcgaa gaagctgcca aactaagaaa ttccactcct caagaatacg ctgataaaat
     3301 cagttttgaa tttaaaaaat tatgggatga atttgaaatc acctatgata tttacgcaag
     3361 aacaactgat acaaggcata ttgaatttgt taaagctatg tttttaaaaa tgtggcaaaa
     3421 aggtgatatt tataaagatg aatacgaagg acactattgt atttcttgtg aaagcttttt
     3481 tactcaaagt cagcttatta acgattgttc ttgcccagat tgtggcaaac aaactagaat
     3541 tttaaaagaa gaaagctatt ttttcaaact ttcaaaatat caagataaaa ttttacaatg
     3601 gtatgaagaa aaagatccca tcttgccaaa aaacaaaaaa aacgaactta taaattttgt
     3661 ccaaaacggc cttaaagatc tttccattac aagaacaagt tttgattggg ggattaaact
     3721 gcctcaagaa attaatgatg ataaacatat tatttatgta tggcttgatg cactttttat
     3781 ctatgtaagc tcacttgact ttcaaaacaa gggggaaaat gctaaatttt ggcctgcgca
     3841 tgtgcattta gtaggaaaag atatcttgcg ttttcatgcc atttattggc cagctttttt
     3901 aatgagcgtg gatttgcctt tgccaaaatt tataggtgca catggctggt ggactaaaga
     3961 aggtgaaaaa atgagcaaat ctaaaggcaa tgttgtaaaa cctaaagaag tggttgatat
     4021 ctatggaagc gaagctttta gatatttttt acttagagaa gtgccttttg gtaacgatgg
     4081 ggattttagc gaaaatatgc tgataaatcg tatcaatgca gagcttagca atgaatttgg
     4141 aaatttactt aatcgcatta taggtatgag tacaaaatat tctcaaggaa atatttcaaa
     4201 agaaggtgtt ttaaaatttc acaatgttga attaaatcaa gcaaaagaac acttaaattt
     4261 agcggtagaa tttttagaaa acttacagtg taatcgttat ttagaagaac tttttaaagc
     4321 cttaagtgta gcaaatttag ctattagtaa atacgaacct tggaatttaa tcaaagaaaa
     4381 caaacacgaa caagctaacg ctttagttgc actttgtgca aatattttag ccaaaacaag
     4441 ccttttatta agccctactc taccaaagtc ttgtcaaaag gtggccttag ctttaaattt
     4501 tgaaatttca tctacaaatt atgcaaaaat gatacttgat aataaacttt tagattttaa
     4561 agcaaatcct tgcgaagctt tatttccaaa agtagaaaaa gctcttttaa aacaagaaat
     4621 taaagaagaa cctaaaaaag aagaaagtcc taaaataaaa atcgatgatt ttgcaaaaat
     4681 tgaaatcaaa gtcgctaaag tgcttgattg tcaaaatata gaagggagtg aaaaactttt
     4741 gaaatttcaa ctcgaacttg acgataaaga aatccgtcaa gtactctcag gcatagcaaa
     4801 atactataaa gccagtgatt taatcggtaa acaagtttgc attataagca atcttaaaaa
     4861 agctaaaatt tttggacatg aaagcgatgg tatgatactt tctgcaaaaa gcggagataa
     4921 acttgtttta atcacccctg aacaacttgt acaaaacggt tctttagtgg gttaaaatat
     4981 gcaaattagc aatttaggcg aacttttaaa cgcgacactc attcatgaag gtagcgtttt
     5041 aagcgtggaa ggttttgcca taaatttaaa tgaacttaaa gcaggctttg ccttctttaa
     5101 taacgataaa aaagaaatta cccaagctgt aaaaaaaggc gcttatgcta taattacaga
     5161 aaatgacatt actattgaag ataaagacat tttttacttt agagtagaaa atctagaaca
     5221 agctcttgta agatttttac gctttttttg cgaagataaa gaatgtgaat ttttgctttt
     5281 taaatcttac gaactaagtc tttgtaaggc tttttatttt aacattttaa aaggaaatat
     5341 ttttgctgat tttgaaaaac taatcaaagc aaaaaagggt gaaatttttt gctactgtga
     5401 agaaaattac ttaaataaac tttgtgccta ttctcatagt ctaaaagatg ctaattttac
     5461 cttattatcg cgatctagct tcttttttac aactttgatt
//
LOCUS       DARGEY010000090         5443 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.090, whole genome shotgun sequence.
ACCESSION   DARGEY010000090 DARGEY010000000
VERSION     DARGEY010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5443
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.090"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(109..1041)
                     /locus_tag="SF008_001388"
     CDS             complement(109..1041)
                     /locus_tag="SF008_001388"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HEG8233641.1"
                     /translation="MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRML
                     PASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            complement(1038..1679)
                     /locus_tag="SF008_001389"
     CDS             complement(1038..1679)
                     /locus_tag="SF008_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG8233642.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            complement(1676..4480)
                     /locus_tag="SF008_001390"
     CDS             complement(1676..4480)
                     /locus_tag="SF008_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(3938..3940),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HEG8233643.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAY
                     YIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANP
                     AVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIF
                     DEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTL
                     IWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENL
                     PGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDA
                     IDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIY
                     LLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTL
                     RDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGE
                     YYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPID
                     TGYPQITKDNIEKVLGITLSAQEKAKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARA
                     VVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPL
                     NLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGT
                     KIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYD
                     IMCQIPETKGGLCRISKDGK"
     gene            complement(4480..4671)
                     /locus_tag="SF008_001391"
     CDS             complement(4480..4671)
                     /locus_tag="SF008_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HEG8233644.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKK
                     KEVLFQRSANWEKYYIKAE"
     gene            complement(4646..5359)
                     /locus_tag="SF008_001392"
     CDS             complement(4646..5359)
                     /locus_tag="SF008_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HEG8233645.1"
                     /translation="MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTM
                     QECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENS
                     NPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINK
                     SIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEF
                     LRREANKQRRTREKSQGIS"
BASE COUNT         1746 a         1159 c          710 g         1828 t
ORIGIN      
        1 ttatatatgg aaaaatagat tttagattca acttataaaa gaaaattcgt tctatttatt
       61 tcaaaaaagc ttaaaactac cgctatgcaa taacatagcg gttaaagatt aaatttttac
      121 attaggatca taagaaaaac taggttcaat ttgcttttta ttgcttaatt ctttatacca
      181 ataagaatgt aaaatataaa cctcttcttc ttctttataa ccactaatca tagaatggat
      241 actgcctttg attgcaaata ctgccatata aatatgcaca ccaaaaaaca ctgcacacac
      301 tatacccaag aaattatgca ctatagctga aattcttaaa agttcaattt gagttaaacc
      361 aaaaagacct tgaattgccg tggaattaaa atcaagaaaa tacataaatc cacctgtaat
      421 tatcatcaaa aatccaccaa atacagctat ataataccaa gatttttgac caaaattaaa
      481 cttacctgca ggtacaggac gttttacttt gcttaaataa ccacctacta tcatcatcca
      541 tctgatatca taacttgcag gaagcattct tttaatccac cataaaaaca tagggattat
      601 agagatgata aataaaaccg ttgcaaaagc atgtaaattt ttacaaaccc ttacaaaaag
      661 tccgcctcca aaagtcgccc caaacatcat cacaaaacca gttggcacta aaatcaccca
      721 agaaattgcc gcgataaaat gaaaaagtct ttcaaataat gtaaaagcat aaattttctt
      781 tccatcgtgt gaaaattgct taggtcctat aaccatataa tgcaaagcaa atgcagataa
      841 taccgcaata acagcgatta aagctatagt agctatatat tcaccttgca aagttgtcca
      901 aagtttgcca aaagtatcat aatttgggat atttgtaata cgatgaaaat cccaaatttg
      961 agtatcttgt cccattctct cgctaccata agcaaataaa ctcactacgc ttaataaaag
     1021 cgttacaaat acttttctca taagcgttcc tttcctgtgt aagcaatctt ccattccaaa
     1081 ctttccgaag gatttggaat gccataattt ctattcataa gtctattatg ataaatctct
     1141 tctattttag aactttcacc tactaaaagt gcttttgttg aacacatcgc agcacataca
     1201 gggacttttc cttctgcgat acgattttga ccataaagtt ctctttcttt ttctgaattc
     1261 gttgcttcag ggccacctgc acacatagta catttatcca taatgccttt atttccaaaa
     1321 acactatctt ttggaaattg tggtgcacca aaaggacaag cataaagaca atatccacaa
     1381 cctatgcaaa tttctttatc gtgtaaaaca ataccatcag cacggatgta aaaacaatcc
     1441 acaggacaaa cgatagaaca aggagcatca tcacaatgca tacaagaaat agaagttgaa
     1501 acttcttttc cttgaattcc ttcatttaaa gtaatcacac ggcggcggcg aatatgaata
     1561 ggaagctcat gtgcttcatc acaagctacc gcgcaaccat tacaatcaat acaacgctca
     1621 ttatcacaaa agaatttcaa gcgttctttt tctaaatttg caaaatttac cttactcatt
     1681 ttccatcctt actgattcta caaagtccac ctttagtctc tggaatctga cacatgatat
     1741 cataaccata atttgttacc gtattagcac tttctccgct tgcataaggc ttagttcctt
     1801 ctgggaaatt gtgcgttaaa tccacgcctt gcataactcc tgtaaaatgg aaaggcaaga
     1861 aaatcatatc ttttgctaca cctggattaa ccttcactct tacatgaatt ttagtacctt
     1921 ctggagaatg cacccaaatc atatctcctg ctttaatgtc ttgctctttt gctaattcag
     1981 gattgatctc acaaaacatt tcaggtgtta aacgcgttag atacatagat gctctatttt
     2041 ccatacctgc accatttaaa ttcacaagtc ttgcagtaac aagattaagc gggaattctt
     2101 tagaataatc cttagcttgt tgcacagaaa caaatttagt atccacgcgg taaagcgctt
     2161 tttgatcttc aaaacttgga tatttttgca ccaaatcgtt tcttggagaa tgtaaaggct
     2221 cacggtggag tggaatttta tctttaaaag tccaaactac agctctagct ttagcgtttc
     2281 cataaggaac tatgcctttt tctatacatt tagttgctat gatattacta tcatcataag
     2341 accaagttga tcccatttta gctttttctt gggcacttaa agtaatgcct aaaacttttt
     2401 ctatattatc tttagtaatt tgtggataac ctgtatcaat aggcgaattt aaaggtgcat
     2461 ttttagcaag taaactctct ccttcatatt caagtccaaa attgtttcta aagcccatac
     2521 caccttttgc tacttcaatg tcggtattat aaagcacagg agaacctggg tgcttatcac
     2581 tccaacaagg ccaaggaagc ccgtaatact cgccagcaac ttcgtctttt ccttctaaag
     2641 ttacctcatc aaatttatcc cagtataaag tatgcttttt aagcctttca ggactccaac
     2701 cattaagccc tatacttcta actgcttttg caatttctct tgttgcattt tcaggccaaa
     2761 caatctcacc tttttcatcg cgtaaagtct tggtaaagtc ttcataaaaa cctaattttt
     2821 tagcaagctc aaataaaatt tcttgatctt ccatgctttc ataaagtgga tctacaactt
     2881 taaatctcca ttgtccgcta cgatttgttg ctgttacact tccgcttgtt tcaaactgtg
     2941 ttgctgcagg taaaagataa attccatctt ttctttctgc aataatccct gcttcattta
     3001 caaaaggatc ggctaaaact aaaagctcta aagcttccaa accttcttta acttttactt
     3061 gttgtgcagt cgaagtaata ccatttccca taactactaa agcttttaaa ggcgttcctg
     3121 cattatcgat agcatcattt ccatcttttc catttaaagc cgctgcccac catctagcaa
     3181 gtgaaagccc agttttatgc atccaatctt tgcttacaaa atttcctaaa agccactcat
     3241 aatccacacc ccaaattttg gcatagtatc tccaagtcgc ttcatttaaa ggataataac
     3301 ctggtaaatt ttcgctcaaa caagccatat ctgaagcacc ttgaacatta tcgtgtccgc
     3361 gtaagatatt aactccacca ccaaatttac ctatatttcc aagtaccatt tgcacaatag
     3421 gtgctaaacg tgtatttgaa gttcctacag tatgttgagt taaacccata gcccaaataa
     3481 gcgtagttgg tttgttttta gctacttcgt gagtgatttg caccaaaagt tctttagaga
     3541 tccctgtaac attttccact tcttcagctg tccattttgc tgcttcttca cgaattttat
     3601 caattccaaa aactctttca tcaagatatt ttgtatcttc caagccttca tcaaaaatga
     3661 tttttaacat tccatacatg aaagcaatgt cagttcctgg acgaattctt gcataaatat
     3721 ccgcttttgc tgcacttttt gtaaatctag gatctacaac aataagcttt gcaccttttt
     3781 cttttgcttt taagaaatgt ctaaaaccca cagggtgatt taccgctgga tttgctccaa
     3841 tgataatgat acatttactt ctttgaatgt ctccaagatg gtttgtcata gcgccataac
     3901 caaatgtatt cgccacaccg gcgactgttg cgctgtgtca aattctagct tgatgatcta
     3961 cattgttcgt tccaaaaaat gctgcaaatt ttcttatata ataagcttgt tcattattaa
     4021 gttttgcaga acctaaaaac ataacacttt caggattttc tttacgataa gcagctagtt
     4081 tttctccgat ctcacttaaa gcttgctcat aacttatgcg tttccattct ccattttctt
     4141 ttttcatggg atattttaaa cgcacatgtg aacgcaccat atcgatcata tcagatccct
     4201 tgcagcaatg tccacctgaa ctcacaggat gatcttgagc aatttcttga cgcacccaaa
     4261 caccattttg cacttctgca ataatcccac agcctacaga acaggctgta caaactgttt
     4321 ttactttttt actaccttca tacgcttctt taagctcatc agcactcgct tctcttaaag
     4381 tttcacttct agcaagcaac ggtgttgcta ggcttgaaag tgctgccatt ttaagaaaag
     4441 aacgacgcgt aagcttgata ttttcaccta cacttgacat tactcagcct ttatataata
     4501 tttttcccaa ttagcacttc tttgaaaaag cacttctttt ttcttacttt tacctttaac
     4561 caaatctttt ctttcttcat ctttagctag agctaaagtc gtgctaccaa gcactccagc
     4621 agcccctaag gcaaaagcgg attttttaag aaattccctg cgatttttca cgagtcctcc
     4681 tttgtttatt tgcttctctt cttaaaaatt ctgaacgcga tagatcgttt tgcacttttt
     4741 tagaatttat ttttgcaggt ttttccactt caaagcaaag tctttcaaat tccataaaag
     4801 ccgatgcaat acttgcaatt tccttatata aattcgcatt tttattcatg aaaacatcgc
     4861 ctaaaaactc atcaatgctt ttattgatca ctttttcaaa aagctctttg gctaaatcat
     4921 cttcattttg ccttaaaaat tcactcatca acaataaaca aaatccaaca ctatcttcac
     4981 tttctttaaa aaatttttca ttgcgtctta ttttactttt gactaaaatt tgacgcacgc
     5041 aaagtaaagg atttgaattt tcaaaacctt cttctatgta agaaaaagtc gttggaatgc
     5101 tatttttaag acttaaaaaa agcaaatcat attctttaaa aaatgcttgt atagaatttt
     5161 catcatctaa atgcttaagc aagatatcaa aatttgattt taaattttca tcaaataaac
     5221 attcttgcat tgtctttaaa tactcttgta attttgacaa tctttcttca gaaaatgaaa
     5281 aaacaaaaag ctctcctaga cattgataat aaagacttct agctaatctt aatttttcca
     5341 aatccattaa agctcccatg cattcaaaat tttcaaaaat agctttaaat tttgcttgaa
     5401 tgaatattat gcaaaatata cctaatattc attttaaagc cga
//
LOCUS       DARGEY010000091         5415 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.091, whole genome shotgun sequence.
ACCESSION   DARGEY010000091 DARGEY010000000
VERSION     DARGEY010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5415)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5415)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5415
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.091"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            119..1369
                     /locus_tag="SF008_001393"
     CDS             119..1369
                     /locus_tag="SF008_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HEG8233646.1"
                     /translation="MFVKNVNFYYRQILEKFENSYFAEDLTKVIIGIDCDYLDANELS
                     FSEFKAKYYEALSKNKICDFAGFFGVFSANFVSLFEKIPLSSKKNYDFPLFLFANAKA
                     YLIYEKNSKMFFKFGASKYFEYLKDDIEPMKKKQKNDFEILNSLEDEKNDFLKMCEKA
                     KEYLLSGDIFQVVLSKQLCIKHQVNAFDYYESLSALNPSAYMFYFPSKYGVVLGSSPE
                     FLLKIKKREIYLAPIAGTRNLENNCDLLALEKDLLSDEKELSEHKMLVDLARNDASKF
                     GTQTRVENLFSIIKNKFVMHIVSEVYANMKEDASIFDVIEAVFPAGTLSGAPKIRALE
                     ITSELEDCDRGIYGGAVGFLNFNEDITLAILIRCAFFTQDKAYLASGAGIVLQSESQK
                     EYAEICAKRKALLVAFENLKKENQ"
     gene            1366..2967
                     /gene="trpD"
                     /locus_tag="SF008_001394"
     CDS             1366..2967
                     /gene="trpD"
                     /locus_tag="SF008_001394"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEG8233647.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDAISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPSNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKPQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQLAALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSAFILAALGVKVAKHGNRAISSSSGSTDVLEALNITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEVRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            2954..3553
                     /locus_tag="SF008_001395"
     CDS             2954..3553
                     /locus_tag="SF008_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEG8233648.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGLIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTKDFALAGGIGLDN
                     IHKAVQTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            3550..4728
                     /gene="trpB"
                     /locus_tag="SF008_001396"
     CDS             3550..4728
                     /gene="trpB"
                     /locus_tag="SF008_001396"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEG8233649.1"
                     /translation="MKKAYYGDFGGQFLPESAMFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYVGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKL
                     LCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            4721..>5415
                     /locus_tag="SF008_001397"
     CDS             4721..>5415
                     /locus_tag="SF008_001397"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEG8233650.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSETFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQGMDIHSVFKLLARIKIKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCF"
BASE COUNT         1894 a          608 c         1048 g         1865 t
ORIGIN      
        1 taattctttg attttaaaac ttacacacac tcttcgctct tggcgtttct aaacttcttt
       61 ttatctaaat tttttcttta atattatttt aatttatttt tttaaaaaaa ggtttattat
      121 gtttgttaaa aatgtaaatt tttattatag acaaatcctt gaaaaatttg aaaattctta
      181 ttttgcagag gatttgacta aggtaattat agggattgat tgtgattatt tagatgctaa
      241 tgaattatcc tttagcgagt ttaaggcaaa atattatgaa gctttaagca agaataaaat
      301 ttgcgacttt gctggatttt ttggagtttt tagtgcaaat tttgtatctt tgtttgaaaa
      361 aattccactt tcttctaaga aaaattatga ttttccttta tttttatttg ccaatgctaa
      421 ggcttatttg atttatgaga aaaatagcaa gatgtttttt aaatttggtg cttcaaaata
      481 ttttgaatat ttaaaagatg atattgaacc aatgaaaaag aaacaaaaaa atgattttga
      541 aattttaaat tctttagaag atgaaaaaaa tgatttttta aaaatgtgcg aaaaagccaa
      601 agaatatctt ttaagtggag atatttttca agtggtctta agtaagcaac tttgtatcaa
      661 acatcaagta aatgcttttg attattatga gagtttaagt gctttaaatc caagcgctta
      721 tatgttttat tttccaagta aatatggtgt tgttttgggt tcttctccag agtttttatt
      781 gaaaattaaa aaaagagaga tttatttagc ccctattgct ggaactagaa atttggaaaa
      841 taactgtgat cttttagctt tagaaaaaga tcttttaagt gatgaaaaag aacttagtga
      901 acataagatg cttgtagatt tagcaagaaa tgatgcttct aaatttggca ctcaaacaag
      961 agtggaaaat cttttttcta ttattaaaaa taaatttgta atgcacatag tgagtgaagt
     1021 gtatgccaat atgaaagaag atgcgagtat ttttgatgtg attgaagcag tttttccagc
     1081 gggaacttta agcggagctc ctaaaataag agctttagag atcactagcg agcttgaaga
     1141 ttgcgatcgt ggaatttatg gtggtgcggt aggattttta aattttaacg aagacataac
     1201 tttagcgatt ttaatccgtt gcgctttttt tactcaagat aaggcttatt tggcaagtgg
     1261 ggcgggtatt gttttgcaaa gtgagagtca aaaagaatat gcagaaattt gtgctaaacg
     1321 caaggcgctt ttggtagctt ttgaaaattt aaaaaaggaa aatcaatgat acttttaatt
     1381 gataattatg attcttttgt ttttaatgtt aaaagcatgt tagagcaact cagcaatgat
     1441 gaaattttag taagaagaaa tgatgcaatt tctctgagtg aaattaaaaa tttaaatcct
     1501 actcatatta ttttaagtcc tggtccaaag catccaagtc aaagtgggat ttgtcttgaa
     1561 atttttaaag caaggcttaa tatccctgtt ttgggcattt gcttagggca tcaagcttta
     1621 gctttagctt ttgattcttt agtggttaag atgcaagagc ctatgcatgc aaaaaattct
     1681 ttgataaaac agtgcaggga aaatgaatta ttttctaatt tgccttcaaa ttttagtgta
     1741 atgcgttatc attctttaga ggttaaacag cttagtgatg agcttgaaat tttagccctt
     1801 gatgaaaagg gtgtgattat ggctttggga cataaaaatt taccttatta tggtgtgcaa
     1861 tttcatcctg aaagctattt tagtgaatat ggcttacaac ttttttctaa ttttttaaaa
     1921 caagatataa aaaaaccaca aaaacaagaa aatcctttaa gtttttattt gcaaaaaatg
     1981 agtgaaaatc attttttaca aagcgatgat tttgagcaaa tttgtaagat tattatgtct
     2041 aaagattatg aaattttaca attagcggct ttgttgattt taatcactga aaagtcttta
     2101 aacgaaaaat ctttaagtgc ttttgtaaga caaattttaa gatattctca aacttttagt
     2161 gatgagagtg agatgattga tatttgtgga acaggtggag atggttttaa aagtatcaat
     2221 gtttctacga ctagtgcttt tattttagca gctttaggag taaaagtagc caaacacgga
     2281 aatcgtgcca tttcaagttc tagcggaagt acagatgtgt tagaagcttt aaatataact
     2341 actccaaaca ctttagaatc agttttaaaa caactaaata atcaagggct tagtttttta
     2401 catgctccat tttttcatcc tttggtagga gaacttaaag aggtcagatc aagacttgga
     2461 gtaagaacgg tttttaatgt tttaggtcct ttattgcacc ctaatttaaa gttaaaatat
     2521 caacttatgg gaaattatca cgcacctgtg cataggcttt tgatagaggt tttaaaaaat
     2581 ttaggacgca aaaaagcttt agtggtaaga ggaaatgatg gtatggatga gcttagtatt
     2641 tgcgatgaaa gtaaaattta tgagctttgt gaaggagaaa ttttagagta ttctatctgt
     2701 cctgaacaat ttggttttaa aagagctttt catagtgaaa tcataggatc tagtgcatat
     2761 gacaacgcta aagatttaaa agatatttta agcggtagaa tgcaaggggc aaaatttgat
     2821 ttggtagttt taaatgctat gtttgcactt tatacagcca ataaagcaag ttcgccttta
     2881 gtggctaaag atatgatttt agaagccatt tattcaggta aggttataga atattttaag
     2941 gagtatcaag cttatgctaa agcttaaaat ttgtggtatt aaagatgaaa aaaatgccaa
     3001 agatttagct tttttaaata ttgatttttt tggacttatt tttgctaaaa gtccaagaag
     3061 agtgagttta gaacaagcaa gaaatttaag tgcaattttt catgaaaaag ataaaaaagt
     3121 tgtcggtgtt tttgtagatg aaaatttgga acaaatttta agatgtatta aagaagctaa
     3181 gcttgatggg atacaaattt atcgcactat taccaaagaa gaatttgaaa ttttaaaggt
     3241 gcaaaatgtt tttgtttggc aggtgattag tgtggaaaat agtttagatt taaaaagtga
     3301 aatttttgct aatttagtac tttttgatgc taagggaatt ttaaagggcg gtaatggaat
     3361 aagttttgat tggactttat taggttctta tactaaagat tttgcattag ctggaggcat
     3421 aggtttggat aatattcata aggctgtaca aacgggagct aaaattttag atcttaattc
     3481 aaaacttgaa gatgaaaaag gcttaaaaga tatcaacaaa ataaaacaaa ttttaaagga
     3541 gttgaaaaaa tgaaaaaagc gtattatggg gattttggtg ggcagttttt gcctgaaagt
     3601 gcaatgtttg ctttaaatga gctagaaggt gcttttttga aattttctaa agataaactc
     3661 tttaaaaaag aattaaacga gcttttaaaa acttatgtag ggcgtcctac tccactttat
     3721 tttgctagaa atttaagcaa aaaatatcag catgaaattt atttaaaacg cgaggattta
     3781 aatcataccg gagcacataa aatcaataat gccatcgctc aagccctttt agcaaaaaaa
     3841 atgggaaaga aaaaaatcat agcagaaaca ggagcaggtc aacacgggct tgcaacagcc
     3901 actgcagcag cacttttagg acttgaatgt gaaatttata tgggggcaac cgatgtgcaa
     3961 agacaggctt taaatgttta taaaatggag cttttgggtg ctaaaattca tgcagtacaa
     4021 agtgggctta aaactctaaa agaagctact actgcggcta ttcaagcttg ggttggagat
     4081 attaaaaata ttttttatgt ggttggaagt gcggtaggtc cttatcctta tcctaaaatg
     4141 gtaatgcatt ttcaaagtat tataggaaaa gaatgcaaaa tgcaacttca aaaactcaat
     4201 aaaaaagtag attatattat cgcagctgtt ggaggtggaa gcaatgcagc tgggattttt
     4261 tatgatttta tcaaagatga aaatgttaaa cttataggta ttgaagcagg ggggcttggc
     4321 attgatacgc cttatcatgc agcgacttta aataagggaa aaacaggcat tattcacggt
     4381 atgaaaacca aggttttaca agatgattta ggcaatatct tgcctgtaca tagtgtttct
     4441 gcagggcttg attatccagg aattggtcct ttgcatgctt ttttatttga aagcaaaaga
     4501 gcgcaatatc atgctataag tgatgaagaa tgtatgcagg ctttaaaatt actttgtaaa
     4561 gaagaaggta ttattgcagc gattgaaagt tcgcatgctt tggcattttt agaaaaactt
     4621 tgtccaactt taaaaaagaa aagcgtgata gtagtaaatc tttcaggcag gggagataaa
     4681 gatatgcaaa tgattagaga ttataaaaaa ggggtgattt atggttgatt ttagaaaatt
     4741 ttataaagaa aatgcaaatg tggcttatac ggttttaggt tatccaaatc ttcaaacaag
     4801 tgaaactttt ttgcaaagat tggatcaaag ccctattgat attttagaac ttggtgttgc
     4861 ttatagtgat cctattgccg atggtgagat tattgcagat gcggcaaaaa tagctcttga
     4921 tcaaggcatg gatattcata gtgtttttaa gcttttagct aggataaaaa ttaaaaaagc
     4981 tttggttttt atggtttatt ataatttaat tttttcttat ggcttggaaa aatttgtgaa
     5041 aaaagcaaaa tctttaggga tttgtgcttt gattgtgcct gaattgagtt ttgaagaaag
     5101 tgatgattta attaaagagt gtgaaagata taatatagct ttaattacac ttgtaagtgt
     5161 tacaacccct aaagaaaggg ttaaaaagtt agtaaaacat gctaaaggtt ttatttattt
     5221 attagcaagc ataggtatta caggtacgaa aagtgtcgaa gaagcaatct tacaagataa
     5281 agtaaaagaa atcagatctt ttacaaattt gcctattttt gtaggctttg gcattcaaaa
     5341 taatcaagat gtaaaaagaa tgagaaaagt tgctgacgga gtgattgtgg gaactagcat
     5401 agtaaagtgt tttaa
//
LOCUS       DARGEY010000092         5372 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.092, whole genome shotgun sequence.
ACCESSION   DARGEY010000092 DARGEY010000000
VERSION     DARGEY010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5372
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.092"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..270
                     /locus_tag="SF008_001398"
     CDS             <1..270
                     /locus_tag="SF008_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233651.1"
                     /translation="YSFSKDVKDMSKNKNLDILNIDEKDGGTLLYKINNQACVGIELT
                     RHDSRMAMKIYGIENLDKECKLFIQSPSFKDLSYTKKDFKWYYLE"
     gene            complement(258..398)
                     /locus_tag="SF008_001399"
     CDS             complement(258..398)
                     /locus_tag="SF008_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233652.1"
                     /translation="MKNLSIQEKKDLDNCVFQNLGRQDTFTLSAIFKNFYLKIKAFIY
                     SK"
     gene            608..1594
                     /locus_tag="SF008_001400"
     CDS             608..1594
                     /locus_tag="SF008_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8233653.1"
                     /translation="MNKFSIVLTLLLCGSCALALDPNLEKTKSATGIDLPTAKWNLPK
                     ALNEDGTIDETKMPKNSEYSKMVILGNKILNETSKYVGPQAKDPKKRFAGNNLSCSSC
                     HANGGSVQNQSGFVGIWARFPQYNARGDKVITLADRINGCFERSMNGKRMPSDAPEMK
                     AMLTYMQWLSQGVPVGAKIEGQGLKKIDFISRAADPKKGKAIYMDKCAVCHQENGLGL
                     KNEDSAGAYYLYPPLWGDDSYNTGAGMYRLIKAASYIKENMPQGAPDLSLEDAYDVAA
                     YMNSQARPIKANRDKDFPDRKVKPLDMDVEPYDDSFSTTQHRYGPYTNMIKK"
     gene            complement(1628..2269)
                     /locus_tag="SF008_001401"
     CDS             complement(1628..2269)
                     /locus_tag="SF008_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HEG8233654.1"
                     /translation="MRKFFCKFVLALVFYSSFALANNSFITLNPSLPNSENSVIEAFS
                     YKCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEFSKEMNELFAFAQYKDEQNG
                     KDASYSDSLSHKLADVYFVSYFLNKQRNFSNLDEFYDIGLKAMNVNKNEVLNFLNTPK
                     AKEILSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
     gene            complement(2355..3793)
                     /locus_tag="SF008_001402"
                     /pseudo
     CDS             complement(2355..3793)
                     /locus_tag="SF008_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315485.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
     gene            complement(3829..4629)
                     /gene="dsbI"
                     /locus_tag="SF008_001403"
     CDS             complement(3829..4629)
                     /gene="dsbI"
                     /locus_tag="SF008_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HEG8233655.1"
                     /translation="MSYIKMKDNCRNFSLSKWQDTRKPWLILIIVTIGLTCIAHFLFQ
                     EYLFMKPCEQCVYIRFDMLVMAIGGMIALINPANNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLYKWAPSWFLPTGECGMDTPVVPENAY
                     NHLNAFQKFFIGTPPDFENGLYSNGWYLIPSLKFMNMAICCLIAFLCCFVVLFAMFIA
                     YVLDKNKSNAKIFALVIVALVLVLKFIGESKNPNQNIASLNQVVLRYS"
     gene            complement(4626..5288)
                     /locus_tag="SF008_001404"
     CDS             complement(4626..5288)
                     /locus_tag="SF008_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HEG8233656.1"
                     /translation="MKFPVKLARSIVVCAFLAGISASALSEGKEYVILKNPIANADNS
                     LIEIFSYHCTHCYDHHKFNTMGKVKEKLPNLTYKFYPVSSMGDYGRQANEIFAFATFK
                     DGVNKIDPTDKNSLTHKVAEAYFNAYFKKKQRWENGKNPEAFYSVGLKAMNVSKADFE
                     NFLKTPETAELLKSYEIANPISQNYGTPAFVVNGKYQIVPSAINSPEALIEITKELSK
                     QK"
BASE COUNT         1894 a          880 c          764 g         1834 t
ORIGIN      
        1 tattctttta gtaaagatgt aaaagatatg agtaaaaata agaatttgga tattttaaat
       61 atagatgaaa aagacggtgg cactttactt tacaaaatca ataatcaagc ttgcgttgga
      121 atagaactta caagacatga ctcaagaatg gctatgaaaa tatacggaat agaaaatttg
      181 gataaagagt gtaaactatt tatccaatca ccttctttta aagatctttc ctacacaaaa
      241 aaagatttta agtggtatta tttagaataa ataaatgctt taatttttaa ataaaaattt
      301 ttaaaaatcg cgcttaaagt aaaagtatct tgccttccaa gattttgaaa aacacagttg
      361 tctaagtctt ttttttcttg aatgcttaaa tttttcatta acctaacctt taaaaatatt
      421 gcaagatttt attatagcga aaaaacttta tttttgcttt aaatatttat aagttctatt
      481 ttaaatataa atgaatatta ttttaaggtt taaagctttt ttcttaaaat gtaattaggt
      541 tttattgact ttttctaaat aaagtcttat actgaattta aattacgcaa aataaggagg
      601 aaaattgatg aataaatttt ctatagtttt aactttgttg ttatgtggaa gttgtgcttt
      661 agccttagat ccaaatttgg aaaaaaccaa gagtgcaaca ggtattgacc tgcctactgc
      721 taaatggaat ttgcctaagg ctttaaatga agatggcacc atagatgaaa ctaaaatgcc
      781 aaaaaattca gaatatagca aaatggttat tttaggaaat aaaattctta atgaaacaag
      841 caaatatgtg ggtccacagg ccaaagatcc taaaaaaaga tttgcgggaa ataatctttc
      901 ttgttcaagc tgtcatgcta atggtggaag tgtgcaaaat caatcgggtt ttgtaggaat
      961 ttgggcaaga tttccacaat ataatgccag aggagataaa gtaattacct tagcagatag
     1021 gatcaatggc tgttttgaac gctctatgaa tggtaaaaga atgcctagtg atgcgcctga
     1081 aatgaaagcc atgctaactt atatgcaatg gttatctcaa ggggttccag taggagctaa
     1141 gatagaagga cagggactta agaagataga tttcatctca agagcagctg atcctaaaaa
     1201 aggtaaggca atttatatgg ataaatgtgc cgtttgtcat caagaaaatg gcttagggct
     1261 taaaaatgag gatagcgcag gggcgtatta tctttatcca ccactttggg gtgatgatag
     1321 ttataataca ggagctggaa tgtatcgtct tatcaaagct gcttcttata ttaaagaaaa
     1381 tatgcctcaa ggtgcgcctg acttaagtct tgaagatgct tatgatgtag cagcttacat
     1441 gaattcacaa gctcgcccta ttaaagcaaa tagagataaa gactttccag atagaaaagt
     1501 taagccttta gatatggatg tagaacctta tgatgatagc ttttctacaa cccaacatcg
     1561 ctatggacct tatacaaata tgatcaaaaa ataattttaa ggcaattttt attgccttaa
     1621 aaatttatta tttcatattg cttaattttt taactagatc ttctaaatct tgcattgaat
     1681 tgattgcgct tgggttaatt tgatattttc cattaacaac aaaagcaggg gtgccatagg
     1741 ttttagctat atcattagct ctttgaaact cgcttaaaat ttctttagct tttggggtat
     1801 ttaaaaaatt taatacttca tttttattta cattcatagc ctttaaacct atgtcgtaaa
     1861 attcatctaa atttgaaaaa tttctttgct tgtttaaaaa ataagaaaca aaataaacat
     1921 cagcaagttt atgagataaa ctatcagaat aactcgcatc tttaccattt tgctcatctt
     1981 tgtattgagc aaaggcaaaa agctcattca tttctttgga aaattcccca ttcattaaac
     2041 ttacaggata gagtttaaaa tgtaaatttg gaaaagcttc tctcagtttt tcaagagttc
     2101 caaatttatg atgattataa caatgtatac atttataaga aaatgcttct attacactat
     2161 tttcagagtt gggtaaactt ggattaagag taataaaact attatttgct aatgcaaaac
     2221 ttgaataaaa tacaagagct aaaacaaatt tgcaaaaaaa tttacgcata ttatatcctt
     2281 ggttaaataa aattttcaaa gataatttta tttaaaaaaa ataaataagc ccaaatttat
     2341 ttttgggctt attgttattt tttaggattg aatgcttgat caacactaaa aggcattgct
     2401 tgataacccg tgcctgaacc gctaaattga atttgaaccg aaggctcctt agcaccccag
     2461 ttaaattcat caatttcagg ttttggttcc ccaagactta cacctttgct aagatcaaaa
     2521 gccattccca gctgttgcgc tataaaccat aatagaatct ttatctggtt catattgagt
     2581 taaagaagtt acaggataaa accattcatt gccattttta tctacaggtt gcaataaata
     2641 tttttgaaat tctttattcc accctttata tgcgcccaat tcctacctat acctgctata
     2701 tctccaaatt tgtcgctttc atccattttg gcaagctctt catcgcttaa agttttaccc
     2761 actttacttg catctatatt taaacacact gcactttgat ctaaagtttt gataatagta
     2821 cttctataag gatctaaaat cttatacaat ctccaatcat caacaacatt accatcctca
     2881 tctacttcta taatagtatc acacactgtg cgtacatgct tactatcttg gacgcaaagt
     2941 atttgttgaa gaaataatgc ccattttttg catattgtcc atagcatgag aaaaaatcta
     3001 tatagacagc aggtaatttg cgattgaaaa tttctcttcc cagacatcgt attttacata
     3061 tctttgacca aatccccaag ttaaagctcc atctttgttt tgacgaaaac ttatcataat
     3121 tccacgattg taaatattac cccagttcat tagtttattg ttatcataat accatctgat
     3181 ttcacccttg gtatcttata ataaagacat ttgaattttc atcccattcc atagcaccac
     3241 ctacaagatt attccataca gattatgagt ctttgccaga ttattttcca ggagcattat
     3301 ttactaaata tagcctatct gaaaattttg gatccatttt taatactttc acattttcaa
     3361 aaagagttcc tctttgatca gtgccttccg cttggttcta tgctagccca tggagttgta
     3421 attttataaa tctcatcaat gactttttga cttttaccat ttgcggtttt agtataactt
     3481 acctttacta taagaaggat aaagtccaaa aataggaatt ccaccatacg tcttagccat
     3541 tttagaattc acattattaa gaaatagttt gaccatttga tttttttata tcgcttaaga
     3601 cataaccatt attcatgata atagcggtca aaggagacaa tccataagga ttcattttaa
     3661 tcatacccat ttgtccttga atttgccaat ctattttcac tccactagga ccacccatgg
     3721 ccattaaagc attaggtgca agtagggtag aacccgccaa aattgccatg caaagagttt
     3781 tgctaagtct catgatcaat cctttaaaat tatttaagac atcctatttt aagagtatct
     3841 taaaacgact tgatttaaac tagctatatt ttgattcgga ttttttgatt cgcctataaa
     3901 tttaagcacc aaaaccaaag caacaatcac caatgcaaaa attttagcat tagatttatt
     3961 tttatctaaa acataggcta taaacattgc aaaaagcacg acaaaacaac ataaaaatgc
     4021 tataagacag caaattgcca tattcataaa ctttaaacta ggaatcaaat accaaccatt
     4081 actataaagc ccattttcaa aatcaggtgg agttcctata aaaaattttt gaaaagcatt
     4141 aagatgatta taagcatttt ctggaactac aggggtatcc atcccgcatt ctcctgttgg
     4201 caaaaaccaa ctaggagccc atttatacaa aggtaaatta aatggataaa taggaatttc
     4261 acgacatcca tctacgcctg caaaaggatt ttcagaatga accacttcat ggatatgatt
     4321 taaagttaga caatgctcca agccaagcca aattccataa aaagctaagc tataagaaaa
     4381 aatttttata atattatttg cagggttgat taatgcaatc ataccaccta tagccataac
     4441 aagcatatca aatcttatat acacacattg ttcacaaggt ttcataaaaa gatattcttg
     4501 aaataaaaaa tgtgctatac aagtaagtcc tatagtaact ataatcaaaa tcaaccaagg
     4561 tttgcgcgta tcttgccatt tggaaagtga aaaatttctg caattatctt tcatttttat
     4621 ataactcatt tttgcttgct aagttcttta gtaatttcaa tcaaagcctc tggagagttg
     4681 attgcacttg gaacgatttg atattttcca ttaacaacaa aagcaggggt gccataattt
     4741 tgcgaaatag gattggcaat ttcataactt tttaaaagct ctgcagtctc tggagttttt
     4801 aagaaatttt caaaatcagc tttacttaca ttcattgctt ttaaaccgac actataaaaa
     4861 gcttcaggat ttttaccatt ttcccatctt tgttttttct taaaatatgc attaaaataa
     4921 gcttcagcaa ctttatgagt taagctattt ttatccgtag gatcaatttt atttacacca
     4981 tccttaaatg tcgcaaaagc aaaaatttca ttagcttgcc ttccataatc tcccatagaa
     5041 cttacaggat aaaatttata agttaaatta ggtaattttt ctttaacttt acccatggta
     5101 ttaaatttgt gatgatcata acaatgagta cagtgataag aaaaaatttc aatcaatgaa
     5161 ttatcagcgt tagcaatagg atttttaaga attacatatt ctttaccttc acttaatgcg
     5221 ctagcactta tacctgctaa aaaagcacat acaacaatag atcttgctaa ttttactgga
     5281 aatttcatta ccctctcctt gaaatttggt tttgataaaa ctttttatta agtttttatg
     5341 taataaatat tataaaacta ttaaaataaa aa
//
LOCUS       DARGEY010000093         5354 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.093, whole genome shotgun sequence.
ACCESSION   DARGEY010000093 DARGEY010000000
VERSION     DARGEY010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5354
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.093"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            110..625
                     /locus_tag="SF008_001405"
     CDS             110..625
                     /locus_tag="SF008_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233657.1"
                     /translation="MLKKLVNCLILGSLFTSSAFAGDFLAKVSNGALSDNSQGVKALN
                     LDEMKQVKGGYQVLTSKLGNSEYIALAIPDNTTTYKQLVAIYTVTGDNTFSNTFLGYT
                     VKRNIAISSSGKPYVLFNYGVALLDRQTGLHRVNSSEILNNNQVIKELTMKYKTQFES
                     NLGGWTARARR"
     gene            695..1843
                     /locus_tag="SF008_001406"
     CDS             695..1843
                     /locus_tag="SF008_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233658.1"
                     /translation="MINGINSYSSYNYTNTFSNNTSNIKSSNVANDNSSLVSDKSRAV
                     SKMLGYGVDKDGFFTSDFNEAAGLPKDYKIYAKDIENFVNIQTKSLLSSCINIDIAKS
                     IGNAYKVFSQLLNDELNNKINFTKEDLVKIPQGFEFNQNTLEINKKYNLNDKEYKDFM
                     SNYQNYSPTSHNIKIMTFFSLDDKSDIFKYSLIDPTPYSNNDKTITKSGIFMTFFTGF
                     QAKNYFIEGQTSILGKMQGFDKTMSQSEIDNLNKFISENSMNFKGDIFKLFDLLNSDM
                     SIDDFKQKILEQKENLNNPTKNTNNKETSEEDKKKPFKPIQAQSSSETYKDDNKMNEL
                     LKKLLENKFGTSDELELLFGMKFSDDNTGEFNKIISQNTAQKSIDIKA"
     gene            1964..2569
                     /locus_tag="SF008_001407"
     CDS             1964..2569
                     /locus_tag="SF008_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEG8233659.1"
                     /translation="MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILA
                     QKCVQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
     gene            2569..3585
                     /gene="mnmA"
                     /locus_tag="SF008_001408"
     CDS             2569..3585
                     /gene="mnmA"
                     /locus_tag="SF008_001408"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEG8233660.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEIKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFI
                     DAKELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(3637..3858)
                     /locus_tag="SF008_001409"
     CDS             complement(3637..3858)
                     /locus_tag="SF008_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8233661.1"
                     /translation="MFFIVQLALGAPPLFYAFIMIASGNVMMALTHYAIGTAPVIFGT
                     GCVTLKKWWSTGFVISIVDIVVMIAVGLV"
     gene            complement(3981..4244)
                     /locus_tag="SF008_001410"
     CDS             complement(3981..4244)
                     /locus_tag="SF008_001410"
                     /inference="COORDINATES: protein motif:HMM:NF013132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8233662.1"
                     /translation="MKKSFSVFLSRFYFYGLELWACFFGISLDATSVALLGLSLVLIS
                     GVLTFGEVLAEKAAWNTLVWFSALVMMATLLGKLGVTQFLAEA"
     gene            complement(4159..4374)
                     /locus_tag="SF008_001411"
     CDS             complement(4159..4374)
                     /locus_tag="SF008_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8233663.1"
                     /translation="MFITATAPNPLVLYFLSPLEIKSTPNASTFAKDKLKELVKMKNS
                     EKIILSVFVSLLLLWAGALGLFFWNFS"
     gene            complement(4317..4661)
                     /locus_tag="SF008_001412"
     CDS             complement(4317..4661)
                     /locus_tag="SF008_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8233664.1"
                     /translation="MARGVIKTGLGEHLAYHFISILGKKTLGIAYSIAFCETILAPVT
                     PSNTARAGAIINPIVQVIARSFKSTPEDGTQNKIGTYLSLVNYQEPILFHQLCLLQLQ
                     LQILWCFIFSLR"
     gene            complement(4884..5033)
                     /locus_tag="SF008_001413"
     CDS             complement(4884..5033)
                     /locus_tag="SF008_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:sulfate symporter"
                     /protein_id="HEG8233665.1"
                     /translation="MEDNSWHFLGLFIAVIMAVILQVMPLGPVCMIAIAIVALSGITT
                     TQLKI"
     gene            complement(5260..>5354)
                     /gene="ffs"
                     /locus_tag="SF008_001414"
     ncRNA           complement(5260..>5354)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="SF008_001414"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
BASE COUNT         2105 a          753 c          846 g         1650 t
ORIGIN      
        1 aaaatttttt taaagcaatg aatgttccaa ataaaaaaat ttgattttaa tatataattt
       61 atgatattat tcaaataaag agtaaaatag ttaagaaaag gagaattata tgttaaaaaa
      121 attagtaaat tgtttaattt tgggttcttt atttacaagt tctgcttttg ctggggattt
      181 tttagctaag gttagtaatg gtgctttaag tgataattct caaggagtta aggctcttaa
      241 tttagatgag atgaaacaag ttaagggtgg atatcaagtt cttacaagca aacttggaaa
      301 ttctgaatat atagcattag ctattccaga taatacaaca acatataaac agttggtagc
      361 catttatacc gtaactggcg ataacacttt ttcaaataca tttttaggtt atacagtaaa
      421 aagaaatatc gcaatatcaa gctcgggaaa accttatgtt ctttttaact atggtgttgc
      481 actacttgat agacaaacgg ggttgcatag agttaattcg agtgagattt taaataataa
      541 tcaggttatt aaagaattaa ctatgaaata taaaactcaa tttgaaagta atcttggtgg
      601 ctggactgct agagctagaa gataaaaaac ttatgaaaaa atcatttttg ccgatttatc
      661 ttataaataa aactttactt acaggaaggt aaaaatgatt aatggtataa attcttattc
      721 aagctacaat tacacaaata cttttagtaa taatacttca aatataaaat catctaatgt
      781 tgcaaatgat aactcaagcc ttgtaagcga taaatctagg gcagtaagta aaatgctagg
      841 atatggcgta gataaagatg gcttttttac aagcgatttt aacgaagctg caggcttacc
      901 aaaagattat aagatttatg ctaaagatat agaaaatttt gttaatattc aaacaaaaag
      961 tctattatca agttgtatta atattgatat agcaaaaagt ataggaaatg cttataaagt
     1021 attttcacaa cttttaaatg atgagttaaa caataaaatc aattttacaa aagaagactt
     1081 agtaaaaata ccacaaggtt tcgaatttaa tcaaaatact ttggagataa ataaaaaata
     1141 taatttaaat gataaagagt ataaagattt tatgtctaat tatcaaaatt actctccgac
     1201 ttcccataat ataaaaataa tgactttttt ctcacttgat gataaaagtg atatttttaa
     1261 atattcttta atagatccta ctccttatag taataatgat aaaactataa caaaaagtgg
     1321 tatttttatg actttcttta ctggatttca agcaaaaaac tattttatcg aaggacaaac
     1381 aagtatttta ggcaaaatgc aaggatttga taaaactatg agtcaaagtg aaattgataa
     1441 tttaaacaaa ttcataagtg aaaatagtat gaattttaaa ggagatattt ttaagctttt
     1501 tgatttatta aattcagata tgagcattga tgattttaaa caaaaaatac tagaacaaaa
     1561 agaaaattta aacaatccta caaaaaatac aaataacaaa gaaacttcag aagaagacaa
     1621 aaaaaagcca tttaaaccta tacaagcgca aagttcaagc gaaacctata aagatgataa
     1681 taaaatgaat gagcttttaa aaaagctact ggaaaataaa tttggcacaa gcgatgagtt
     1741 agaacttctt tttggtatga aatttagtga tgataacaca ggagaattta acaaaattat
     1801 ttctcaaaat actgcacaaa aaagtataga tattaaagct taaggattta aaagtcttta
     1861 aattcctaat cttaataaaa taaacctatt aaaacttata taataaagaa cttattataa
     1921 atttttagct agaatggaat ttattttaac taaaggttga aaaatgaatg aaaaaataag
     1981 ccaagattta gaaaaatttg ctaacatacc aaacctaaaa aatgccgtaa ctttttttgg
     2041 ttcagcaagg cttaaagaag ataattttta ttatcagcag gctaaaattt tggcacaaaa
     2101 atgtgttcaa aatggttttt gtgtgataag tggtggaggt ggtggtatta tgcgtgcagc
     2161 caacgaaggt gctttttcac aaaaaaataa tacaaattca atgagttctg tagggtttaa
     2221 tatattttta cctcacgagc aaaaacttaa tgattttgta gaatataata ttacttttga
     2281 gagcttagcc atacgcaaaa tggctcttat tgaaaagagt ctagcttttg tgatcttccc
     2341 aggcggcttt ggaacacttg atgaattgtg tgaaattctt acattaaaac aattagaatt
     2401 taaaaaagat gttcctatta ttttgtttgg gagtgaattt tggcgaggtt ttgatgagtt
     2461 cgtcagaaat tctttactca aacttgaagt gatttctaaa ggagatgagt taaagtataa
     2521 aatcactgac gacttggatt ttataattaa tactttaaag gaaatttaat gaaaattcta
     2581 gtcgctatga gcggtggagt tgatagtaca gtcactgctt acaaacttaa aaatttaggt
     2641 catgaagtta taggttgtta tatgaaactt catggcaaac caaattatca cgaagaaaat
     2701 atcaaaaaag tagaaaaagt tgcaaacttt ttgcaaattc cttatcatat tttagactta
     2761 caagaagatt ttaaaaacaa agtttacatg ccttttgtgg atacttataa agagggtaaa
     2821 acaccaaatc cttgcgcttt atgtaaccgt tttatcaaac ttggaaaact tttagaattt
     2881 gctaaaagtt taggttgtga aaaacttgcc acagggcatt atgcaagact tgaaaacaac
     2941 ttaataaaaa ccgcagtaga tgaaagcaag gatcaaagct attttttggc cagtgcagat
     3001 aaagaagctt taaaatatct tatttttccg ctaggcgaaa taaaaaaaga agatgtgaaa
     3061 aaatttgctt ccactataga ggttttaaaa tcttttgcca cccaaaagga aagttctgaa
     3121 atttgctttg ttgaagatac ttatgtgcaa gttttagatc agtttatgga tacaaaaatt
     3181 cctggagaag tattagatag tagcggaaaa gtagtaggca aacatgaggg ctatatgcac
     3241 tataccatag gcaaaagaag aggttttgaa gtgcgtggag cacatgagcc acattttgtt
     3301 ttaaaaatca atcctaagca aaatcaaatc atcgtaggaa caaaagaaga gcttaaaatc
     3361 agtgaattta acctaaaaaa tatcaatctt tttatagacg ctaaagagct tgattgcgaa
     3421 gtaaaaatcc gctatcgttc aaaatccaca ccttgcaagg tagaaattta tgaagataaa
     3481 agtgcaaaaa tcatcctaaa agatcctgtt tatgggcttg ctagcggaca aatggcagtc
     3541 ttttatgatc atgataaagt catagcaagt ggttttatag aataatttct aggaattaat
     3601 tcctagaaat tattaataaa atcctaaaat tttccactaa acaagcccaa cagctatcat
     3661 cactactata tcaactatgg aaatcacaaa acctgtactc caccattttt taagagttac
     3721 acagcctgtt ccaaaaataa caggagctgt tcctattgca tagtgagtta atgccatcat
     3781 aacattacct gaagctatca taataaaagc ataaaaaagt ggtggtgctc ctaaggcaag
     3841 ctgcactata aaaaacaaaa aacattgctg atatatgagc tgtaatggaa gcaaagaaat
     3901 agtgtgtata taaaaaaagc aaggcttaaa aatatcataa tagaaatttc cccaagtccc
     3961 atagcagaag caaattcacc ttaagcttca gctaaaaact gtgtaacgcc aagtttgcca
     4021 agtaaagttg ccatcattac aagagctgaa aaccatacta aagtattcca agcagctttt
     4081 tcagccaaaa cttccccaaa agttaaaact ccactaatca acaccaaaga caacccaagc
     4141 aaagccacac tagtcgcatc aagagaaatt ccaaaaaaac aagcccaaag ctccagccca
     4201 taaaagtaaa agcgagacaa aaacactgag aatgattttt tcactatttt tcatttttac
     4261 aagttctttt aatttatctt tagcaaaagt agaagcatta ggcgtggatt taatttctag
     4321 cggagagaga aaataaagca ccaaaggatt tggagctgta gctgtaataa acatagctga
     4381 tgaaatagga ttggctcttg ataatttacc aaagaaagat aagtgcctat tttattttgt
     4441 gttccatctt caggagtgga tttaaaactt cttgcaataa cttgaactat aggatttatg
     4501 atagcccctg ctcttgcagt atttgaagga gtaactggag ctaaaatagt ttcacaaaaa
     4561 gctatagaat aagcaatacc taaggttttt ttaccaagaa tactgataaa atgataagcc
     4621 aaatgctctc caagtcctgt tttaataact ccacgagcca caataataga ataactataa
     4681 gctaaataag agaatttgaa aaaccactta aagcgtcttt tatacccgtt ttagatttta
     4741 aatttgatat agcagtattt accttttcat cttatactct tttgatataa aaaatcaagt
     4801 actgaagtat ttaaaggaaa ttttagtctc atcaataagt tgttgcgtag aagttttcga
     4861 agtagctttg gtgtaaattt tacttagatt ttcaattggg tagtggtaat gccactaaga
     4921 gctactatgg caatagctat catacaaaca ggccccaaag gcattacttg taaaatcact
     4981 gccataatca cagcaataaa aagcccaaga aaatgccaag aattatcttc caaacctaca
     5041 aggagtaggt ataggccaaa acacagctgc aataaaatac gcagcaccaa caagggaatt
     5101 ttctttctat ccattgttta tcttttgata ttggtaatga aattctagtt aactaatatt
     5161 ttaataaatc ttaaaattat aatttttaaa taaattttta atttataaaa aagctagcct
     5221 gattgaaaaa taaataggga attttaaaat gaataaaacc cttccccaga taactgcggc
     5281 acacactaaa atcaagtgct ctgctgtgtt cccaccctga agcggtgctt aaaaatagca
     5341 ttgcacaggt ctaa
//
LOCUS       DARGEY010000094         5274 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.094, whole genome shotgun sequence.
ACCESSION   DARGEY010000094 DARGEY010000000
VERSION     DARGEY010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5274)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5274)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5274
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.094"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            94..588
                     /gene="cetC"
                     /locus_tag="SF008_001415"
     CDS             94..588
                     /gene="cetC"
                     /locus_tag="SF008_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HEG8233666.1"
                     /translation="MKEIVLSENALITSKTDLKGNIIYANNDFLKYAGYKVDELLYKS
                     HNIVRHEDMPRTVFKCLWDYIQKGDEIFAFVKNKAKDGNFYWVFANVSASFDTNGNII
                     NYYSVRRAPNRKSLSIIEEVYKILLEKEQKSGINAGVSALMDIVSSYKMTYNELIFNL
                     QENN"
     gene            709..2088
                     /gene="cetA"
                     /locus_tag="SF008_001416"
     CDS             709..2088
                     /gene="cetA"
                     /locus_tag="SF008_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HEG8233667.1"
                     /translation="MVKNGLLLTIFLSVIGVLGVIFIHIFVGAIIFVLIAVLMIYLLR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLRE
                     INTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMD
                     LSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDV
                     VNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRL
                     EENSSALGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQD
                     ERAQGVINELSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQRS
                     AEILAKLKI"
     gene            2106..2603
                     /gene="cetB"
                     /locus_tag="SF008_001417"
     CDS             2106..2603
                     /gene="cetB"
                     /locus_tag="SF008_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HEG8233668.1"
                     /translation="MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDVNNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRAEQQQGLNKGVEMLKNFCKDADKTYNELIFS
                     LQEAK"
     gene            2691..4550
                     /gene="mnmG"
                     /locus_tag="SF008_001418"
     CDS             2691..4550
                     /gene="mnmG"
                     /locus_tag="SF008_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEG8233669.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     ARNKLLKLPNLEISQEQASVLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVN
                     PKAFSFRSRNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KVNRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQTQMLRSVKGFENAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVVKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLG
                     LLSEQDFTYIQNIANNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDIEKLKKLDPIFETMDHYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPEN
                     FDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDILQIYIKMQKKKA"
     gene            4551..>5274
                     /locus_tag="SF008_001419"
     CDS             4551..>5274
                     /locus_tag="SF008_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HEG8233670.1"
                     /translation="MLAFFIFLSTLVLLFWRPWNLPIWVFSSLGAFFVFIFQLVDFKD
                     AYFVFSLVWDSSLTLVGLIILSFSLEALGFFDFIASKILHFSREKNQGKIYISTKKLM
                     LFLLIFVFFLSAFFANDGAILIITPIIIALFSTLKDCKNHAFILSSFLLSLSFLCDAS
                     SNALVISNLTNIITANYFKIEFLEFAKNMFLPNFFVLLSTIVTVFVLYVRVLPKRLEF
                     KLIKKEQISLKLFFLCIVFLFLF"
BASE COUNT         1838 a          648 c          928 g         1860 t
ORIGIN      
        1 tttataattt tgcaattcag tttgcttttt gttgtttgtt attggtaata attctatttt
       61 tgatttattt gttttattgg gatgttttaa attatgaaag aaatagtttt gtctgaaaat
      121 gctttaatta cttctaaaac agatcttaag gggaatatca tttatgccaa taatgacttt
      181 ttaaaatacg caggttataa agttgatgaa cttttgtata aatctcataa tatagtaaga
      241 catgaagata tgccacgcac tgtatttaaa tgtctttggg attatattca aaaaggagat
      301 gaaatttttg catttgtgaa aaataaagcc aaagatggta atttttactg ggtttttgca
      361 aatgtaagtg cttcatttga tactaatgga aatatcatca attattattc tgttcgtcgt
      421 gcacctaata gaaaatctct ttctataatt gaagaagttt ataaaatttt acttgaaaaa
      481 gagcaaaaat cgggcattaa tgctggagtt tcagctttaa tggatattgt aagttcttat
      541 aaaatgactt ataatgaact tatttttaac ttacaagaaa ataattaaat aagatatatt
      601 taatcttttt tattgtataa ttttcaccta gaaattaaag taatatatta ttaaagtatt
      661 gttttgattt atgacttcaa aaaattttca ataaaaaggg gtaaatttat ggtgaaaaat
      721 ggattattgt taactatttt tctaagtgtt atcggtgttt taggtgtcat ttttattcat
      781 atttttgttg gagcgataat ttttgtttta atcgctgttt taatgattta tttgcttaga
      841 caacacaaag atgagcaaat aatgatagat aaacttttgg ttctttgtag agagttaaag
      901 gagggtaatt tcgacaatag aatcatctat gtaaaaacaa aaagcaaaaa attagccgaa
      961 atagcagata atcttaacaa tactattgat gggctagaag cttacttaag ggaaattaat
     1021 acttctattt cttgttctca aaaaggtgaa ttttatcgca aggctttgcc tgaaggttta
     1081 aaaggaattt ttgctcataa tatcgaattt ataaataaag ctttagcaaa catagaagtg
     1141 acagcaagat ctacttttaa aaatgcttta tcaagaactt taatggattt aagccttgga
     1201 aatcaaaata aagacatgtc tcaaatttct agctcattaa atcaagatat tagcatgatg
     1261 aaaaatgtat atgatacagt ggatgccatt tctcatacag ctacagaaaa tggttcagag
     1321 gtggattctc ttcaaagtgc tatgggttct ttaatggatg ttgtaaattc gagcaaggag
     1381 acagtacaaa cttttgtggc taattcacaa aatatcactt cagtggttga agtaatacgt
     1441 gatatagccg atcaaaccaa tcttctagct ttaaatgctg ctattgaagc tgcgcgtgca
     1501 ggagagcatg gtaggggctt tgcggttgtg gctgatgaag ttagaaagtt agcagaaaga
     1561 actcaaagat ctacaagcga aatttctatt gcaattcaga ctatgcaaca agattttgta
     1621 aatatccaaa gtggcagtga gcaagttttt aacattgtta gtgaatctga agaaagaatt
     1681 aataaatttt ctcaagcttt taaacgtcta gaagaaaata gtagtgctct tggtgttaat
     1741 tttggatcct ttgcaaagag attgattttg tctgtggtta aaatcgatca tattctttat
     1801 aaatcaaata tatatttaaa tttaaatggg gctcaaaatt tcaatcttga aagtgtagat
     1861 ccaatttcta atctttgtca agatgagaga gctcaaggtg ttattaatga gcttagttct
     1921 gaaactgagt taaatttagc taaagaattt ataaaagata acgctaaaaa agcaatagaa
     1981 gaatcaagtc aagattatat cgatcaaaaa gcttatgatg cgattgtaaa tgatattaaa
     2041 tcactagagc aaagaagtgc tgaaatctta gcaaaattaa aaatataaat taagagggtg
     2101 ggaaaatgtc aagagaaatt tttttacaag aagatagttt aattacttct aaaacagatt
     2161 taaaaggtaa aatagtttat gcaaatgatg attttttaaa gtatgcaggt tataccatgg
     2221 gtgaagtttt aaataaacct cataacatag taagacatga agagatgcca aaaactgttt
     2281 ttaaatattt atgggattat atgaaagaag gcaaagaaat ttttgcttac gtaaaaaata
     2341 aaaccaaaga taacaattac tattgggttt ttgcaaatgt aaccccatca atagatgtta
     2401 ataataatat cataggctat tattccgttc gtcgtatgcc aaataaaagc gctatttcta
     2461 caatagaaag tctttatagc gatcttttaa gagcagaaca gcaacaaggc ttaaataagg
     2521 gtgttgagat gcttaaaaat ttctgcaaag atgcagataa aacttataat gagttaattt
     2581 tctctcttca agaagctaaa taaatttttg ttagacttaa aacgagtttg ttttaagtct
     2641 aaatattata taatctttct tttaaaaatt cacatttttc aaggcaaaat atgtttgatg
     2701 tcattgttat aggtggtgga catgcaggtg ttgaagcaag tgctgctgct gctagaatgg
     2761 gtaaaaaaac cttactttta actacattga ttgagcaaat aggagcggca agttgtaatc
     2821 cagccatagg tggacttgct aaagggcatt tggtaaaaga acttgatgcc atgggtggtc
     2881 ttatgggtga aatcaccgat gaagcaggga tacaatttcg cattttaaat gaaagtaagg
     2941 gtgtagccgt tcaaggaagt agggcacaaa ttgatatgga taaataccgt atcattgcac
     3001 gtaataaact tttaaaactt ccaaatttag aaatttctca agaacaagcg agtgttttaa
     3061 tcgtagaaaa tgatgaagtt aaaggcgtaa aaacaaattt agaaaatata tattttgcca
     3121 aaaaagtcat cctaacaaca ggaacttttt taaatggact tattcacgta ggtgaaaata
     3181 aacttcaagc aggaagggta ggggagcttg cttcggtaaa tttaggaaat tatctgcaaa
     3241 ctttgggttt aaaaatggga cgtttaaaaa caggaacttg cccaagagtg gatgcaaaaa
     3301 gcattgattt tagcgtgctt gaaattcaag atggtgatgt aaatcctaaa gcttttagtt
     3361 ttcgttcaag aaatttcaat cctactcaac ttccttgtta tatcgcacgc actaatacaa
     3421 ctacacatga gattattaag aataattttt atcgtgcccc actttttaca ggacagattg
     3481 aaggtgtggg gccaaggtat tgtccttcta tagaagataa ggtcaatcgt tttagcgaca
     3541 aagaaagcca tcatcttttt atagagcctc aaactatcga tgcgacggag tattatatca
     3601 atggtttttc tacttcttta ccttatgaag tacaaactca aatgttgcgt tctgtaaagg
     3661 gttttgaaaa tgctaaaata acccgttttg gttatgctat agaatatgac tatatagagc
     3721 caactgaact taagcatact ttagaactta aaaagattaa aaatctttat tgtgcaggac
     3781 agattaatgg aactacaggt tatgaagagg ctgcagcaca aggctttatg gcgggaatca
     3841 atgcaagctt aagcatagat atgaaagagc ctttgatttt aaggcgtgat gaagcttata
     3901 taggagtttt aatcgatgat ttggtagtaa aaggtacaaa agaaccttat agaatgttta
     3961 cttcaagagc agaatttaga ctgcttttaa gggaagaaaa tgctatactt agacttggaa
     4021 aatatggcta tgatttgggg cttttaagcg agcaagattt tacttatata caaaatatcg
     4081 caaacaatct tcaaaaagga cttgaatttt tactttctaa agaattcacg cccaataacc
     4141 aaaacaatgc ttttttagag agtttgggag aagataaaat ttcttctata gtcaatcttc
     4201 aaaaaattgt cgcaagagca agttttgata tagaaaaatt aaaaaaactt gaccctatat
     4261 ttgaaactat ggatcattac tccttaagag agattttaaa tgaggcaaag tattatcatt
     4321 acattagtat gcaaaaagct caagtagaaa aaatgaaaaa tcttagtgag cttaaaattc
     4381 ctgaaaattt tgattttaaa agtgtaagtg gtttgagtaa tgaggttgta gaaaaactta
     4441 atcatcataa accgccaacc atttttgctg caagtcaaat cagtggaatc actcctgcag
     4501 cgttagatat tttacaaatt tatatcaaaa tgcaaaagaa aaaagcttaa atgcttgctt
     4561 tttttatttt tttatctact ttagttttac ttttttggcg tccatggaat ttacctattt
     4621 gggtattttc tagcttgggg gctttttttg tttttatttt tcaattggta gattttaaag
     4681 atgcttattt tgttttttct ttggtttggg atagttcttt aactttggtt gggttgatta
     4741 ttctttcttt tagcttggaa gctttgggat tttttgattt tattgcgagt aaaattttgc
     4801 atttttctag agagaaaaat caaggtaaaa tttatatcag cacaaaaaaa ttgatgttat
     4861 ttttgttgat ttttgtcttt tttctttctg cattttttgc taacgatgga gcgattttaa
     4921 tcattacacc tattattata gctttatttt caactcttaa agattgtaaa aatcatgctt
     4981 ttattttaag ttctttttta cttagccttt cttttttatg tgatgcaagt tcaaacgctt
     5041 tggttatttc aaatttaacc aatatcatca cagcaaatta ttttaagata gaatttttag
     5101 aatttgctaa aaatatgttt ttgccaaatt tttttgtttt gctttctact atagttacgg
     5161 tttttgtgct ttatgtgaga gttttaccta aaaggcttga atttaaatta atcaaaaaag
     5221 agcaaatttc attgaaattg ttttttcttt gcatagtatt tttatttctt tttg
//
LOCUS       DARGEY010000095         5145 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.095, whole genome shotgun sequence.
ACCESSION   DARGEY010000095 DARGEY010000000
VERSION     DARGEY010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5145)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5145)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5145
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.095"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..417
                     /locus_tag="SF008_001420"
     CDS             <1..417
                     /locus_tag="SF008_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8233671.1"
                     /translation="IEFAKYEDMLDFLQCTKEKLEHSLLKNKFARAFLLKENEKTIGY
                     MIYFYTFSSFWGSGGIYLEDIYIRENFRKKGYGKAVFKFLGEICKKENLKRLDWVCLN
                     DNILGINFYESLNAKHLKQWRNYRLSGENLEKLCDL"
     gene            414..1022
                     /locus_tag="SF008_001421"
     CDS             414..1022
                     /locus_tag="SF008_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HEG8233672.1"
                     /translation="MIRSLYYLKAMGFNFVDTHTNHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFSLMEPKIKNVKLLILDVFGQKSENESGILLNSKKGEKLKHYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWNELKLIQPAFLLCLGEYTFKSLGFKDYHIL
                     KGEVFAYKNFFIMPSYDLDFIEKNPSYEKNFIQDLKKIKGFL"
     gene            1019..2209
                     /locus_tag="SF008_001422"
     CDS             1019..2209
                     /locus_tag="SF008_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233673.1"
                     /translation="MKKIFLIFFLSCFLLNAKEQKLVDVKPVENFYPKLSVQECNTNC
                     LFDLLESRLYLSFLSEFADQNDQFLSNVYAKLLNSITDFEKNVQKITSVKLAIIIPEK
                     TIKSYSNTIINSSIAYLLRQRAEIKVKVFLTGTEDSDKIRAALDAAQAQGYQYAIAGF
                     TLKGANELKNYSGNMKIFIPTIHKNNIQISNQNIIFGSIDYDAQIATLLSKSNANIAI
                     FSDGSALSSNLNSRILAQNNNARIYTIEGEKLDFSRLLRSQGGVNNASIFFNAPLIKT
                     ALASSQLRIYNIHPYVLLSTQINYNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNE
                     IFNQSIDYNWIAYATSIGVDYFYTEFLNKKSENLFDEKIKNSQVDYKVRLMQGKQASF
                     EELK"
     gene            complement(2201..2575)
                     /locus_tag="SF008_001423"
     CDS             complement(2201..2575)
                     /locus_tag="SF008_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEG8233674.1"
                     /translation="MKMRVYYEDTDAGGVVYHSNYLKFCERVRSEIFFNKKVDIFDAS
                     KGHFLLTKANCNFLKPAKLGDMIEIKTKILEVKNASVEILQEIYKDEILFFKMELTLA
                     FIKNEKPARMDMQLKKLFEELF"
     gene            3003..5015
                     /locus_tag="SF008_001424"
                     /pseudo
     CDS             3003..5015
                     /locus_tag="SF008_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853402.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1969 a          748 c          683 g         1745 t
ORIGIN      
        1 atagaatttg caaaatacga agatatgtta gattttcttc aatgcacaaa agaaaaactg
       61 gaacattctt tactaaaaaa taaatttgct cgtgcttttt tgttaaaaga aaatgaaaaa
      121 actataggct atatgattta tttttatact ttttcgtctt tttggggcag cggtggaatt
      181 tatcttgaag atatttatat acgagaaaat tttcgtaaaa aaggttatgg aaaagctgtg
      241 tttaaatttt taggagaaat ttgcaaaaaa gaaaatttaa aaagactcga ctgggtttgc
      301 ttaaatgata atattttagg tattaatttt tatgaaagtt taaacgctaa acatcttaaa
      361 caatggagaa attatcgtct aagtggagaa aatttagaaa aattgtgtga tttatgataa
      421 gaagtcttta ttatttaaaa gctatgggat ttaactttgt tgatacacat acaaaccact
      481 ttgaacaagt acaaaatttt caagaattaa aacaacttgt ttcatcttgc accttatgcc
      541 aattttccaa aacaagaaaa tttagtctta tggaacctaa gataaaaaat gtcaaattgc
      601 taattcttga tgtttttggg caaaagagtg aaaatgaaag cggaatttta cttaattcaa
      661 aaaaaggtga aaaattaaaa cactatattt atcaaatttt agggctttgc gatgaagatt
      721 tttatttttc ttatttattt aaatgttttt gtaatggaaa atttgatgat ttttcgctac
      781 aatcttgctt accatttttc tggaacgaac taaaactgat tcaacctgct tttttgcttt
      841 gtctaggaga atacacattt aaaagcttgg gatttaaaga ttatcacatt ttaaaaggtg
      901 aagtttttgc ttataaaaat tttttcataa tgccaagtta tgatttagat tttatagaaa
      961 aaaatccaag ttatgaaaaa aatttcatac aagatttaaa aaaaattaaa ggatttttat
     1021 gaaaaaaata tttttaatat ttttcttatc ttgctttttg cttaatgcaa aagagcaaaa
     1081 attagtcgat gtaaaacccg ttgaaaattt ttatcctaaa ttaagcgttc aagaatgcaa
     1141 cacaaattgt ctttttgatc ttttagaatc aagattatat cttagttttt taagtgaatt
     1201 tgcagatcaa aacgatcaat ttttatctaa tgtttatgca aaattattaa attccattac
     1261 tgattttgaa aaaaatgttc aaaaaattac ttctgtcaaa cttgcgataa ttatcccaga
     1321 aaaaaccata aaaagctact caaatactat aataaattca agcatagcct atcttttaag
     1381 acaaagagct gaaatcaaag taaaagtttt tttaaccggc acagaagata gtgataaaat
     1441 tcgagccgcg cttgatgcag cacaagctca aggatatcag tatgccatag ctggatttac
     1501 cttaaaaggt gctaatgagt tgaaaaatta ctcaggaaat atgaaaattt tcataccgac
     1561 tatccataaa aacaacatac aaatttcaaa tcaaaatatt atttttggaa gtattgacta
     1621 tgatgctcaa attgccacac ttttaagcaa atcaaatgct aatatcgcaa tatttagcga
     1681 tggctctgcc ttatcaagca atctaaattc aagaattctt gctcaaaata ataatgctag
     1741 aatatatacc atagaaggcg agaagcttga tttcagcaga cttttaagat cacaaggtgg
     1801 agttaataat gcctcaatat tttttaacgc tccattgatc aaaacagctc tagcaagttc
     1861 tcaactaaga atttataaca ttcatcctta tgtgctttta tccactcaaa tcaactataa
     1921 tccaacattt ttaagtttaa cacaacaagg agatagagaa aattttatca ttgctaattc
     1981 tatcaataac cacgatgata acttagtcta tcttaatgaa atttttaatc aaagtataga
     2041 ttataactgg attgcttatg ctactagcat aggagttgat tacttttata ccgaattcct
     2101 aaataaaaaa agcgaaaatt tatttgatga gaaaatcaaa aattctcaag ttgattacaa
     2161 agtgcgtctt atgcaaggta agcaagcaag ctttgaagaa ttaaaataat tcttcaaaga
     2221 gcttttttaa ctgcatatcc attctagctg gtttttcgtt tttaataaaa gctaaagtta
     2281 attccatttt aaaaaacaaa atttcatctt tataaatttc ttgtaaaatt tccacagaag
     2341 catttttgac ttctaaaatt tttgttttaa tctctatcat atctccaagt tttgcaggtt
     2401 ttaagaaatt gcaatttgct tttgtaagta aaaaatgtcc cttagacgca tcaaaaatat
     2461 ctactttttt attgaaaaaa atttcacttc ttactctctc gcaaaatttt aaataattac
     2521 tatgatacac cactccaccc gcatcagtat cttcataata cacacgcatt ttcatcgctt
     2581 taccttaaaa aatatttcac atttaaaaaa cattagatta tacaacggaa attctttgat
     2641 atcgcttttt agtttatatt aaaaattccg tccaatctta atttaataaa gctttttaac
     2701 ttcactggga gggggtatag agaaattttg ttttaaactt tccattgtta ccttcttaag
     2761 catcaacgct tttgcagcca ctcaagcaaa tactacagac aatcgaaatt tcaatattcc
     2821 aaagcattat tttaatgata acgaacttta tgataaaacc aattctactt ataaaaaatt
     2881 ccaaggtata aattattatg ctaagagttc taaacaatat attaacaata tttaacaatc
     2941 ataaaccaaa tattacaaat ataaacgatt taaattttaa acattattta cttactcctg
     3001 atatgagaga agatgaagtt ctttctttta aagcaaggca tggtgttaat acagccgatc
     3061 gtagtataaa aaacagttag agtgtaatca cagcaaaaac cgatcatgct gatgcaagtt
     3121 ataacaaact tatattagaa caaggagaac ttagttcagt tttttatctt aaacctaaag
     3181 atactcatat aaaaacccta gtaattctaa aagcaatcaa cgcatgaatt tcttaatgag
     3241 ttctaccttt actcattata gtaatgcaag ctataaccaa accatacttc aaaaagatgc
     3301 ccatattagt atgggagttg agaacactta tgatttagcc ttaaatggtt ctccttattt
     3361 aatcggagct atagccactt atggagattc tacaaataat agtttaaata taaaagcagg
     3421 tagcagtgta gagtttttta cttccttgcc taaaaaagat aaaaatggta ataatacctt
     3481 tgatgaaaga atcactcacc ttgtaggtgg tttagcttat caaggtaatg taaaaaacaa
     3541 taaaatcttt atcaaagatg ctaatatgat tatccatggt ccaagtaaag cttatgctag
     3601 tttagctgct gctcatatta gcgcaggtta tatagatagc gaatcagata aaaattttca
     3661 agccagtaaa aaccttttag acatagatag ttttaatctt gatatgtata tgaaccatga
     3721 taaacaaccc ttagcttata attctgtttt atttgctgat tttttgggtg gaaaaaccga
     3781 acaaggacaa gccttagata atactatcaa tattaaaaga tattaaaaac ctaaaaaaat
     3841 aaaaacaatg agaacatttt tgctcaagct ttgtttaact tctacgcagg agcttataat
     3901 aatggagaag taaattataa taccttaaac atagaattaa aacatccttt agaaatcgct
     3961 aataacttct taggttataa ccaacattct ttttatggtg actttgcaac taaaggagtt
     4021 aatcataata ccattaacat taaaaacgat cttaccacaa ccgatctttc tcaaagctat
     4081 aaagatgctt taaatattgt agctggtaga accttggaag gcaatgcgga ttataataaa
     4141 gtttatatta ataattctat gtcaacctta cctgtataca tttatacagc taagaaaaac
     4201 cttcttaata atcaagactt ttatcctagt agtgctaata acaataaagt atcgattaaa
     4261 gattttgctt cttttagaaa tctaactgta ttaacagaag ccaaagaagc ttcttataat
     4321 actataaatt ataacaatgt tcaaagcatt actgatgcaa gtaatataga taaaggttct
     4381 aaaatcatca taagagcttt agataaagcc aatcataata ccatagatat aaaaaactat
     4441 tcttctaatg cagctgataa tgcttatttg attatggctt ataatgaagc tgcttataat
     4501 aaaatcatta tcaatgatac tttatttggt gtagcttcag ataaaagaga aggaatttta
     4561 agtattatag ctggactttc aaacaatggc catgataata ccttaatcat aaacaatctc
     4621 aatcttgatg agtataaaaa taacaattct gtttttatag ctccttcggc cattacaggt
     4681 ttaagtgaag ctaaatctta taataatacc ttatataggc gggaatttaa atatatttaa
     4741 aaacactttc atagatatat tagcaggagc cttagtacat tatgaagata attatagtac
     4801 ttctaatgct atagctcctt cagatatcag tttaagtaaa aacaatagac tgattttaaa
     4861 tactaaagtt gaagctagaa ttattaataa ctttgagcat tattatctta ttgtatccaa
     4921 taaaatcaac acaactcccc tttttgaagt catacgatgc tcctattaat atttctagcg
     4981 agggagtatt ggctctttat accctcaaag agtaataccc ctaccttaaa aataaagaaa
     5041 tcttaatctt acaaagtgag caaggtttta tagatgaaaa ctctaatact ttaaatcaag
     5101 aagaacttca aagctttatt gaaaaaatgc aaaaaaacaa agaag
//
LOCUS       DARGEY010000096         5044 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.096, whole genome shotgun sequence.
ACCESSION   DARGEY010000096 DARGEY010000000
VERSION     DARGEY010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5044)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5044)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5044
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.096"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..505
                     /locus_tag="SF008_001425"
     CDS             <1..505
                     /locus_tag="SF008_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002792331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233675.1"
                     /translation="FIFISKFKFINFILKLCIYLAFLSIWILSSNFINPFTGVFSSDK
                     LYESQFEKSLNDLNTSAIINLASILQNDFNLHLKDQNISFTELNSAKASIIANKENLL
                     KLNDVNSNIAKEVLGEKYTELLKTINQDKIIENIIKSTSVLYGIILLLCIFSLQKTAR
                     KNSIVPS"
     gene            complement(535..1236)
                     /locus_tag="SF008_001426"
     CDS             complement(535..1236)
                     /locus_tag="SF008_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEG8233676.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLKEQGVKEDEISYNSPNIID
                     RLSDPYGNDTQATYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDNYDIEY
                     LYTKLNEIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(1233..2435)
                     /locus_tag="SF008_001427"
     CDS             complement(1233..2435)
                     /locus_tag="SF008_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HEG8233677.1"
                     /translation="MQKHTKIHGFAKFKLIVILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCMIIDDI
                     YAFIALRFFEALGGCAGVVIARAIVNDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESAPHLKNKKFSHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFSLSEQKFALLFGANALGFVICANINARL
                     VLKYESEKILAKALMIMFISTVILLANAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGLISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKDKK"
     gene            2538..3887
                     /locus_tag="SF008_001428"
     CDS             2538..3887
                     /locus_tag="SF008_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HEG8233678.1"
                     /translation="MQNLNQNEQIKCPSCGSFIDISAALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYTKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLIQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQESKNLEFEREKMRLEFQKNTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIAAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLENLAKDED"
     gene            complement(3911..4954)
                     /locus_tag="SF008_001429"
     CDS             complement(3911..4954)
                     /locus_tag="SF008_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8233679.1"
                     /translation="MKKHILLLGLCLSLSLSAKSVSDYKVGEELSDKEGVEYFKELSK
                     RPVQEWPNKNLSINDVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCH
                     MDNDGNGLPGTKKYVIPFLNVLNNYPKLDIETMKIISVEDRIRGMGGTDSHRFPNDSK
                     EMKAILAYFKWLKEAYGIKDGVKLEGDFFAKMNFPNRPADPVRGKKLFEENCVACHGE
                     RGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDE
                     DALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVK
                     YGPWKNPNHFPGE"
BASE COUNT         1829 a          823 c          819 g         1573 t
ORIGIN      
        1 atttatattc atttcaaaat ttaagttcat taattttata cttaaattat gcatatatct
       61 tgcatttttg tctatttgga ttttaagttc gaattttata aatcctttta caggtgtatt
      121 ttcatcagat aagctttatg aaagtcaatt tgaaaaaagt ttaaatgatt taaatacgag
      181 tgctattata aatctagcaa gcatattgca gaatgatttt aatctccatt taaaagatca
      241 aaatatttct tttacagagt taaattcagc taaggcatcg ataatagcaa ataaagaaaa
      301 tcttttaaaa ttaaacgatg taaattcaaa tatagctaag gaagttttag gagaaaaata
      361 tacagaactt ttaaagacta taaatcaaga caagattata gaaaacatca taaaatccac
      421 tagtgtttta tatggcatta tacttttgct ttgtattttc tcgctccaaa aaaccgcacg
      481 aaaaaattcc atagtgccaa gctaagcctt aaagcttagc ttgaaatttt atcattagtc
      541 ttttaagtag tattctatag tagaaaccac tcttatggtt ttgatgtaag gtgtgttttt
      601 atctctgttg ctgatgctaa attgtccttg agaagccttt tttatcttgc ctagatggct
      661 gtttgaatct tgtgcgaatt ttatcgctgc atttctagca ttgagcgttg cttcttctat
      721 catttgcggt tttatctcat ttagcttggt gtaaaggtat tctatgtcat aattatcgat
      781 tttcgttact atgccaaatt ttgcaagact tgaaatgttt tctagtatgc tttttccaag
      841 ttttacgttt tgcgtataga tgagtaaatt cgcagtgcct atgtatcggt atgtagcttg
      901 agtgtcgttg ccataaggat cgcttaaacg atctatgatg tttggcgagt tgtagctgat
      961 ctcatcttct tttacgcctt gttcttttaa aaatttgatg atattttctt tatcttgttc
     1021 tagttcttcg tataaatttg taagattgtt gtttgatctt gtgaatttta taggaagtat
     1081 caaagtatct gcttcgactt ctttttggct taaacccttt acacttacac ttctttcaag
     1141 agttttaaaa tcacttaaag ccttgttaaa tccaaaagct agaatcaaac tcgccaaaac
     1201 tatggctaaa gccataaaga tattatttgt tttcattttt tatcctttat tttgattaga
     1261 aaatatatca tatttgcaac caatacgcaa gcacacatta caaaagcaag gattatcggc
     1321 gtatttgcgt taatagcccc aaccacaaaa gaaataagtc ctgcaaaacc aaattgcacc
     1381 gttccaagca ccgcagaagc agttccgcta tgttctttaa accttgccat agccaaagtc
     1441 gtggtattgg gtgcgatgaa accaagcata gcgatacttg taaaaatact aagctcaaaa
     1501 agcaagaaat ttgggtgaaa aaaggcattt gcaagtaaaa tcacagtcga tataaacatt
     1561 atcatcaaag cttttgccaa aattttttcg ctttcgtatt ttaaaaccaa tctcgcattg
     1621 atatttgcac agatgacaaa acctaaagca tttgccccaa aaagcaaggc aaatttttgc
     1681 tcacttaagc taaaaaactg cgtaaaaaca aagcttgatc ctgtgatata agcaaacatc
     1741 gccgccaaag caaaagaagc acatagtata taaactaaaa agcgtttatc gcttaaaaca
     1801 aatttgtagc ttttcatcgc ttcatgatgg gaaaattttt tgtttttaag atgaggtgcg
     1861 gattctttta aaccaaaaag tatcatcaaa aaaagcaaaa ttcccaaagc aaacaaagtc
     1921 gcaaaaatac tatgccatga aaaatactct agcaaaattc ccccaaaagt tggcgaaagc
     1981 ataggagcaa gagaactaaa aaccatcatc aaagcaaaaa tccctgcagc ttctttgatc
     2041 tcaaacaagt cattgacaat agcccttgcg ataaccacac ctgcacaacc cccaagtgct
     2101 tcaaaaaatc tcaaagcgat aaaagcataa atatcatcga taatcataca aaacaaactc
     2161 gaaacgatga agaaaaatat ccccaccaaa gctggaattt tacgcccaaa aatatcactt
     2221 aaaggcccat atataagctg tcctaaagca aaagcgataa aaaaacttgc gatactaagt
     2281 tgggttaaaa aagaattagt ttgaaaactt tgctccacat gagaaagtgc aggcaaatac
     2341 atatctgtag aaagtggtgc tatgcttgac atcaaagcaa ggataacgat gagtttaaat
     2401 ttagcaaagc cgtgaatttt ggtgtgtttt tgcatttgta atcctaatta ttctaaaaga
     2461 atgattttaa caagtcaatc ttagaataat ctttgttttt ctatgttaaa tttagggaaa
     2521 aattctaagg aaattttatg caaaatttaa accaaaatga acaaatcaaa tgcccaagtt
     2581 gtggaagttt tatcgatatc agcgctgctt tatatgctca aattttagat aaagctaagc
     2641 aagaaatgct aaaacaaaaa aaagaatttg atgatgaggt aaatgctaaa agagctgaat
     2701 ataccaaagc tttaaatgat ttaaaaactc aaaagataga acaagaaaaa ctcataaacg
     2761 agcaagtaag ccaaaagctt cttttagaaa agcaaaaatt tgaacaagaa cttcttatac
     2821 aaaagcaaaa tttccaaaaa gaattcagcg agaaatttaa caaagagcat gaaaatgaaa
     2881 tgaaaatcat gcaagaagaa ctcgagaaaa aaagcaaaga gcttagcgag tttttaagca
     2941 taaaggctga aaatgaaagg ctaaaaagag agcaaaaaga aaatgaagaa agattgaaat
     3001 ttcaagccaa agaagaggct tttaaagaat ttaaagaaca agaaagcaaa aatttggaat
     3061 ttgaaagaga aaaaatgcgt cttgaatttc aaaaaaatac tcaagaacaa gatcttaagt
     3121 acaaagaact agaaacgaat tttaaaagtg tagctcaaaa gctagaagac gcacaacgca
     3181 ggatagaaca aggctcacag caactccaag gcgaagcagc cgaactactc atagaagaat
     3241 acatacaaag tgagtattta agcgatgaag taaaagaagt gccaaaaggc gtaaatggag
     3301 ccgattgtct gcatatagta aaggataatt ttggaaatat ttgcggaagt attttatatg
     3361 agagcaaacg cactaaagaa tttaacaaag aatggcttga taaacttaaa ctagacagca
     3421 tagctgcaaa aagtgatata gcggttttga ttacaaaaac tatgccaaaa gataaagaaa
     3481 aaacgcattt taaagaagga attttgatct gtacttttaa tgaattcaaa ggtgttttag
     3541 cagtgcttag agaaagcatt ataaacgctt ataaactcaa aaatgccctg caaaacaaag
     3601 atgaaaaaaa tcacatttta tacgaatact taaattccaa ggaatttaac acgcaaatca
     3661 cttttatact caaaacttac caaaatatga aagaagagtt agaagctgaa aaaagggctt
     3721 tgcaaaatat atggaaaaaa agagaaagag ctatagaaaa tctaagtttt aattccactg
     3781 ccatagtgag ttctttaaac gcgatattta gcgacttaca aggtggaaat ttgataggcg
     3841 aagaagggat taaaagtctt gaaaatttag caaaagatga ggattaattt tgggctaagc
     3901 ccaaaattaa tcattctcct gggaagtgat ttggattttt ccaaggtccg tattttactt
     3961 ttatgtattc tttagggtct aaattttgtt gtggtgaagc aaaatactca ggttttaatg
     4021 atggggattt gctataagct gtatcaagtc ctgcacgatt ttctgtagtg gttataggca
     4081 ttcttacaaa acctgtattg acataagctg ctatatccag tgcatcttca tcgcttaata
     4141 taggattatc cgcactcgca ccaaaaggca tggctgattt taaaaatctt gctaaaaatg
     4201 gtatcatagc catgtgtcca ccatcaggat agataagtaa agatggatat aaatgtccgc
     4261 taccttgttc gtaattatca ttttttaccc caagtcctct ttcgccatgg caagcaacgc
     4321 aattttcttc aaagagtttt tttccacgca cagggtcagc tgggcgattt ggaaaattca
     4381 tcttagcgaa aaaatctcct tcaagcttta cgccgtcttt gatgccataa gcttctttta
     4441 gccatttaaa ataagctaaa attgctttca tttctttaga atcattagga aatctatgag
     4501 agtcagttcc acccattccg cgaattctat cttcaacaga gatgattttc atcgtttcta
     4561 tatcaagttt tggataattg tttaggacat ttaaaaatgg aataacatat ttttttgtcc
     4621 ctggtaaacc attgccgtca ttgtccatgt gacaggaaat acagtttact tcgttgcttg
     4681 tcttttttag cttgctatag ggtcctagag tactttctgt cttgcttaaa agctctatgc
     4741 cataacggat taaatcccct tgcttacctt ttggaacatc attgatgctt aaatttttat
     4801 ttggccattc ttgcacaggt cttttggaaa gttccttaaa atactctact ccttccttgt
     4861 cgcttaattc ttctcctact ttgtaatcac tcacgctttt agcactaaga ctcaaactaa
     4921 gacataaacc aagcaataaa atgtgttttt tcatgatttt cctccttttt atttgcagtt
     4981 caaattgatt ttagtgtatt ttttcttaaa tattaagcat aataagaata atttaaataa
     5041 aatt
//
LOCUS       DARGEY010000097         4976 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.097, whole genome shotgun sequence.
ACCESSION   DARGEY010000097 DARGEY010000000
VERSION     DARGEY010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4976
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.097"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            84..974
                     /locus_tag="SF008_001430"
     CDS             84..974
                     /locus_tag="SF008_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEG8233680.1"
                     /translation="MKKILLFILSLGIFYTFTQAKNLEQEQNTSSNLVSVSIAPQAFF
                     VKKIAANTLDVNVILPPNSNEHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQN
                     FSKLQIVNMQKNIALIQTHDTHEHSHEHEHHEHEHFDPHTWLDPILVQTMALNIYDTL
                     IQKYPQNENLYKENLDKFLAELDSLNLQIASKLEKLKNREFVVYHPSWTYFAKRYNLT
                     QIPVEILGKEPKSKDLQKLITLMKDKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDH
                     LSYDWENELLKTADAFSHNL"
     gene            987..1841
                     /locus_tag="SF008_001431"
     CDS             987..1841
                     /locus_tag="SF008_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEG8233681.1"
                     /translation="MLFFEISNLNYAYNNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQKKEIGYVPQHTLANPNFCPRVLEIILMGLVSKKIFGF
                     YGKKDKEKAMQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEKNCDSKKLCEQEFTRRNLKKTEFKKENFCL
                     KFSKENNA"
     gene            1834..2637
                     /locus_tag="SF008_001432"
     CDS             1834..2637
                     /locus_tag="SF008_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEG8233682.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKHYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLILLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKRLGFI
                     MILASFLSMIFCVLGLILSYYLNLSSGACIIAIACFGFLMHLIGKFLKR"
     gene            complement(2626..3963)
                     /locus_tag="SF008_001433"
     CDS             complement(2626..3963)
                     /locus_tag="SF008_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="McrC family protein"
                     /protein_id="HEG8233683.1"
                     /translation="MKTSNTFSIIEHQAFSKEDLKEIFKEKAEGFYKELEDFAKNNEN
                     LLGFKNKNSLKAKNYVGIIQTKSGVLEILPKCTNLDSYKKEDSSSNHDKEKLRRCYEL
                     DNISKNNDFYEKDFKFNPKNLLINMLKTLKNSPFKKSQISSLQSSKIPLFEVFITMFL
                     DEFDSVYKKGLMRSYLSCEENRAFLKGKLLFNEHIKQNLIHKERFFTSNDEFVLDIAP
                     NRLIKSTLNFLKSKTSLNKFRLIKAMQMLDEVEFSKNYEKDFSYKISRHFDYYENLLL
                     WCKIFLKNESFMPYHGKNEAFALLFPMEKIFEDYVAYMLKKVNSTQDIKVQNNGKYLI
                     SKNDENCFMLKPDLYIKNKMILDTKWKIPNDSEDEKKQGIAQSDLYQMFAYACKFKIY
                     DIKLVYPLCEKTQDLQRKIAEKFFVFKASEHLYFKEQGQKDIKVQVFFAPLPF"
     gene            complement(3963..>4976)
                     /locus_tag="SF008_001434"
     CDS             complement(3963..>4976)
                     /locus_tag="SF008_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8233684.1"
                     /translation="KYEIKDGIFKELCEKALENRDSIKNFNFYIDKLKEKVKIDDNNP
                     EKYFELPNTKYSIQYRNGKTFRIKFDDMSKNHKDYPVSIDNIEKLYKTSNIDEIYNSA
                     YVRAILNYLKLQGLEDYKEKDEKVNLPYIIIIDEINRGNVSKIFGELITLIEASKRIG
                     EKEELKVTLPYSGKEFGVPKNVYIIGTMNTADRSITSLDTALRRRFEFIEMMPDVSKL
                     SIDCEGINLQELLKAINTRIEYLLDREKTIGHAFFISVENLESLKKVFKNRIIPLLQE
                     YFYNDYALIDAVLNKNGMLEISVENKDYLKNMTEFIESDKIVYKFSDSNNWNKDTFIK
                     IYK"
BASE COUNT         1694 a          725 c          636 g         1921 t
ORIGIN      
        1 tttaaataaa tatcgcttcg aaaattctat gtattaagct taatatcgtt ataatttaaa
       61 aaatttatat cgaaggaaat actttgaaaa aaattctatt atttatttta tctttaggga
      121 tattttatac tttcacacaa gctaaaaatt tagagcaaga acaaaatact agtagcaatt
      181 tagttagtgt cagtatagca cctcaagcat tttttgttaa aaaaatagct gcaaatactc
      241 tagatgtcaa tgttattttg cccccaaata gcaatgagca taattttgaa tttaaaccaa
      301 gtactatgaa aaaacttgaa aaaagtgata tttatttcac tataggctta gaatttgaaa
      361 aagtttttac ggataaattt aaacaaaatt tttcaaaact tcaaattgta aatatgcaaa
      421 aaaacatagc tttgattcaa actcatgata cacacgaaca ctctcatgag catgaacacc
      481 acgaacatga gcattttgat cctcatactt ggctagatcc tattttagtc caaactatgg
      541 ctttaaatat ttatgacacc ttgattcaaa aatatccaca aaatgaaaat ttatataaag
      601 aaaatttaga taaattttta gcagaattgg atagtttaaa tttacaaatt gcctcaaaat
      661 tagaaaaatt aaaaaataga gaatttgtag tttatcatcc ttcttggaca tattttgcaa
      721 aacgctataa tcttacgcaa attcctgtag aaattttagg taaggaacca aaaagcaaag
      781 atttgcaaaa acttatcact ctaatgaaag ataaaaattt aaaagtcatt tttgttcaaa
      841 atggtttccc tgaaaatgca gcaaaaacac ttgctaaaga atgtgatgca aaaatttaca
      901 aaatagatca tttatcttat gattgggaaa atgagctttt aaaaactgct gatgcctttt
      961 ctcataattt ataatcaggt tttttgatgc ttttttttga aatttctaat ctaaactacg
     1021 cttataataa tgaaatcatc ttaaaaaaca tcaatcttag ctatgacaat aaagactttc
     1081 tctctatcat aggtccaaat ggcgcaggaa aatcaacact cgtaaaactt atcttaggac
     1141 ttttaaaatc caaaaatgaa atccatttca aagctcttca aaaaaaagaa ataggctatg
     1201 ttcctcaaca cactctagcc aatcctaatt tttgtccaag agtacttgaa atcattctta
     1261 tgggacttgt aagtaaaaaa atttttggtt tttatgggaa aaaagataaa gaaaaagcta
     1321 tgcaagcttt aaaaagcgta ggaatggaaa aattttggaa caaaaccatt gattctctaa
     1381 gtggaggaca aaggcaacgt gtttttatcg cgagagcctt agctagtgaa tgcaaaatgc
     1441 ttattttaga tgaacctacc gcaagcgttg ataacaagtc tgctatacaa atttttgaac
     1501 ttctaagctc tttgcaccaa aaaggcatgg gaattttact catttgtcac gatatcaacc
     1561 ttgtattagc ttatagcgat aaaattgcac atttaaacaa agaacttttc ttgcatacta
     1621 acactaaaga aaaagaaaaa agttcatttt taaaacattt atacgaaaat cactctcatt
     1681 tttgtgatgt agaaatgagt ttaaatactt gtttttgcga tgaaaaaaat tgcgatagca
     1741 aaaaactatg cgaacaagaa tttacaagaa gaaatttgaa aaaaacagaa tttaaaaaag
     1801 aaaatttttg tttaaaattt tcaaaggaaa ataatgcttg aaattttaaa tttcaccttt
     1861 tttcaaaacg ctttactagg agcgatttta gtcagtatag cttgtgggat cataggcact
     1921 ttggtgatga taaatcgcct tttttctatg gctggaggta taacacatgg ggcttttggt
     1981 ggtataggta tagcttttta tttctctttg cctattttat taagcacggg aatatttact
     2041 ttatttttgg cttttttagt agctttttta gctaaacact atgaacacag aagtgatagt
     2101 attatcgctg taatatgggc ttttggaatg gctgttggga ttattttaat cgatttaagc
     2161 cctagttata acacagattt aatggcttat ctttttggga gcattttggc tgtaggaaca
     2221 caagatttat ggcttatggc tttggttgat agcgtggtgg tgcttttaat tttattattt
     2281 tatagacaat ttgaagcatt aagctttgat gcggaatttg caaaagttcg tggtatcaat
     2341 acaagttttt ttcattatct tttaatcgcc cttatggctt tttgcatagt tatttccata
     2401 cgccttgtag ggcttatttt agttatggct ttacttagta tcccaagctt tattgctgaa
     2461 aattttacca aaagacttgg ctttatcatg attttggcaa gttttttaag tatgattttt
     2521 tgtgttttag gacttatact tagttattat cttaatctct caagcggtgc ttgcatcata
     2581 gctatagctt gctttggttt tttaatgcat ttgataggca aatttttaaa aaggtaaagg
     2641 tgcaaaaaat acttggactt ttatatcttt ttgcccttgt tctttaaaat acaaatgttc
     2701 gctcgcctta aaaacaaaaa atttttctgc gatttttctt tgtaaatctt gagttttttc
     2761 gcataaagga tacacaagtt taatatcata aattttaaat ttgcaagcat aagcaaacat
     2821 ttgatacaaa tcgctttgtg ctataccctg ttttttctca tcttcactat catttggaat
     2881 tttccatttg gtatctaaga tcattttatt ttttatatat aaatcaggct ttaacatgaa
     2941 acaattttca tcattttttg agattaaata ctttccattg ttttggactt taatatcttg
     3001 agttgaattt acttttttta gcatataagc tacataatct tcaaaaattt tctccatagg
     3061 aaaaagcaaa gcaaaagctt catttttacc atgataaggc ataaaacttt cattttttaa
     3121 gaaaatttta caccacaaaa gcaagttttc ataataatca aaatgtcttg aaattttata
     3181 gctaaaatct ttttcataat ttttagaaaa ttctacctca tcaagcattt gcatggcttt
     3241 tataagtcta aatttattca aacttgtttt tgattttaaa aaatttagcg ttgattttat
     3301 caaacgattg ggtgctatat ctaaaacaaa ctcatcgttg cttgtaaaaa atctttcttt
     3361 gtgtatcaaa ttttgcttga tatgctcgtt aaatagtaat tttcccttta aaaaagccct
     3421 attttcttcg caacttagat aagatctcat caagcctttt ttatatacgc tatcaaattc
     3481 atctaaaaac atagtgataa acacttcaaa taaaggaatt ttagaacttt gcaaagatga
     3541 aatttgcgat tttttaaagg gggagttttt taaggttttt agcatattta tcaaaagatt
     3601 tttaggatta aatttaaaat ctttttcata aaaatcatta tttttagaaa tattgtctaa
     3661 ttcataacat cttcttagtt tttctttgtc atgatttgaa gaactatctt cttttttata
     3721 actatctaaa ttcgtgcatt ttggcaaaat ctccaaaacc ccgcttttag tctgtataat
     3781 gccgacataa tttttagctt ttaaggaatt tttgttttta aagcctagaa gattttcatt
     3841 attttttgca aagtcttcta gctctttata aaacccttcg gccttttctt tgaaaatttc
     3901 ttttaaatct tctttagaaa aagcttggtg ttcgatgata gaaaaagtat tacttgtttt
     3961 cattatttat atatttttat aaaagtatct ttattccaat tattactatc actaaattta
     4021 taaacaatct tatcgctttc tataaattct gtcatatttt ttaaataatc tttattttca
     4081 acactaattt ccaacatacc atttttattt aaaaccgcat caatcaaagc atagtcattg
     4141 taaaaatact cttgcaaaag tgggatgatt ctatttttaa aaaccttttt taaactttct
     4201 aaattttcaa cacttataaa aaatgcgtgt cctatggttt tttctctatc tagtaaatat
     4261 tctatacgag tgtttatagc ttttaataat tcttgtaaat taataccttc acaatctata
     4321 gataatttgc tcacatcagg catcatctca ataaattcaa agcgtcttcg caaagctgta
     4381 tcaagagaag ttatgcttct atcggctgta ttcatagtgc ctataatata aacattttta
     4441 ggcactccaa attctttgcc actataaggc aaagtcactt ttaactcttc tttttcacct
     4501 atccttttgc tagcttctat caaggttata agctcaccaa aaatcttact tacattacca
     4561 cgattgattt catcgatgat gattatataa ggtaaattta ctttttcatc tttttctttg
     4621 taatcttcta aaccctgcaa ttttaaataa tttaatatag ctctaacata tgctgaatta
     4681 tatatttcat ctatattaga agttttatat aatttttcta tattatctat acttactgga
     4741 taatctttat gatttttact catatcatca aatttaattc taaatgtttt tccatttcta
     4801 tattgaatag aatatttagt atttggtaat tcaaaatatt tttctggatt attatcatct
     4861 atttttactt tttcttttaa tttatctata taaaaattaa aattttttat actatcccta
     4921 ttttctaaag ctttttcgca aagttcttta aaaattccat cttttatttc atattt
//
LOCUS       DARGEY010000098         4954 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.098, whole genome shotgun sequence.
ACCESSION   DARGEY010000098 DARGEY010000000
VERSION     DARGEY010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4954
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.098"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            65..445
                     /locus_tag="SF008_001435"
     CDS             65..445
                     /locus_tag="SF008_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233685.1"
                     /translation="MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYDEKLISYLSQN
                     DFEFAILVQNKDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFDSRVLMIVDKLEN
                     FKKFYKLKIDGIILKDNIDNFPKN"
     gene            490..4002
                     /locus_tag="SF008_001436"
     CDS             490..4002
                     /locus_tag="SF008_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[ACP]--phospholipid O-acyltransferase"
                     /protein_id="HEG8233686.1"
                     /translation="MQKKSFLKIYGLIPFLLIAFINAFVDLGHKIIIQNTIYKAYEGS
                     EQLFLNAIVNALILLPFILMLSPSGFLADKYPKNIVMKISAIFNVILTLIICICYYSG
                     AFWMAFIFTFIMGAQAAIYSPSKYGFIKELVGKDFLAMGNGVINAVSIVAILAGMALF
                     SLSFESLYSSMYNQTDEILKEVAPLGIVLILFSCIEVFFAWRLPKLKQTNKDLVFNKK
                     DYIRGKLLINNLKLVFKNKTIWLCIIGISFFWAISQLYLVSFPVFAKNELFIENTFYV
                     QISLAFSGIGVILGSLVAGKFSKNYIELGFIPLGALGMFLMAFLMPYFISLLSYSFLF
                     FFFGFCGALFIIPLNTLIQFHAKENELGQILAGNNFFQNIAMLGFLLLATLFVKFEIN
                     VIYLFYFIALVTFIGSFYILLKLPFSLVRILLSIAFLQRYRLLVEGFENIPEKGGALL
                     LGNHISFIDWAVVQMAIPRKIYFVMERSIYSKWYIKIFLDKFGIIPVSSTGSKTSLEL
                     IAKHIKEGNLVCLFPEGTLSRHGQLNEFKAGFELACECLSEDDGKIIPFYIRGLWGSA
                     FSRSDEEFSARNRTLNKRKIAIAFGKAMPLHSKKDEVKAKVFELSFMAWKSQCEAMHT
                     IARAWIDTAKKNLNQIAIIDTLAGDISYRKMLTLSLFLNFFIKRKSKELNINLQRGSY
                     APKEEAIGILLPASFASSLTNLSVLIAEKIAVNLNFTAGEKALKAAIKNAQISQIYTS
                     KTFLEKLANKGINLNFDTNIHLIYFEDIVEDFKMQKTKIFSMMLAVSIIPSFILKSIF
                     TPSKNNLAIAAILFSSGSEGSPKGVMLNNRNILSNIAQISDVLCTRNNDVILSSLPPF
                     HAFGLTVTTFLPLLEGIKSITFSDPTDALGVAKAVAKNNVTIMCGTSTFLGIYARNKK
                     LDALMFESLRIVVSGAEKLKNEVRTTFEMKFKKSIFEGYGATETTPVASVNLPNHFDV
                     DYWLIHRANKEGSVGMPLPGTAVRIVDPNNYENLKTNEDGLILIGGHQVMVGYLNDKE
                     KTDEVVKEIDGIRWYNTGDKGHLDEDGFLYIVDRYSRFAKIGGEMISLGAIEEEIAKF
                     IDTEVVKFCATSLEDEKKGEQIVLLIECNNEIFEGVCEAIKNSNIPTLFKPRYYFQIE
                     KIPLLGSGKVDLKKVKELAKNLAI"
     gene            complement(4010..4921)
                     /locus_tag="SF008_001437"
     CDS             complement(4010..4921)
                     /locus_tag="SF008_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEG8233687.1"
                     /translation="MFVFIPLFTIFILLAGGYFAKRIGVLKQKQARTFLDFAIIFALP
                     CLIFDKAYHLNFDFSLIIFIFIGLFSCILAAFFAILIGKVFHFSKVTLVSMFLLSCFG
                     NTIFVGMPIVAGIFNDPQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLLANVK
                     KILSFPPFLALLFGFLCKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSY
                     KPTIVVIFAKMILAPLFFVFCLKIFNLELKDSTIVAIIESAAPTMTLAGAMVMKAKLD
                     SNLAVSAVAFGVLFAFVSMPILIWTLL"
BASE COUNT         1795 a          634 c          807 g         1718 t
ORIGIN      
        1 ttgcttggta acaattttat aagtataatt tacaaaataa taaaaaatag agctaaggaa
       61 aaaaatgctt attattggac ataaattatt aaaaaattta gatttttctt ttattgaaag
      121 tgttgaagaa gttaaagata ataaagttta ttgtattgtt tatgatgaaa aattgatttc
      181 ttatttaagt caaaatgatt ttgaatttgc tattttagtt caaaataaag atgagatatt
      241 tttagccaat gctttaggag ctaagttttt gctttgtaat gataaaaaac ttgcaaaatt
      301 tgctagtaag gttgcagaat tttatgtttt tgatagtagg gttttaatga ttgttgataa
      361 attagagaat tttaaaaaat tttataaatt aaaaatcgat ggaattattt taaaagataa
      421 tatagataat tttcctaaaa actgataaat tcttttgtaa aataagcgct aattgacgag
      481 gtttaaataa tgcaaaaaaa atcttttttg aaaatttacg gattaattcc ttttttactt
      541 atagcattca tcaatgcttt tgtggatttg ggacataaaa ttattattca aaatactatt
      601 tataaggcct atgaaggaag tgagcagtta tttttaaatg ctatagttaa tgctttgatt
      661 ttacttcctt ttattcttat gctttctcct tcgggttttt tagcggataa atatccaaaa
      721 aatattgtaa tgaaaatttc agcaattttc aatgttatac tcactttaat aatttgcatt
      781 tgttactata gcggtgcttt ttggatggct tttattttta cttttataat gggagcacaa
      841 gcagcgattt attcaccaag taaatacggt tttattaaag aactcgtggg aaaagacttt
      901 cttgctatgg gtaatggtgt aattaatgcg gtaagcattg tggcaatctt agcgggaatg
      961 gctttatttt ctttaagctt tgaaagtctt tatagttcta tgtataatca aacagatgaa
     1021 attttaaaag aagtagcgcc tttaggaatt gtgctaattt tattttcttg tatcgaagta
     1081 ttttttgcgt ggcgtttacc taagctcaaa caaacaaata aagatttagt ttttaataaa
     1141 aaagactata ttcgtggaaa acttctaata aataatctta agcttgtttt taaaaataaa
     1201 actatttggc tttgtataat tggaatttca tttttttggg ctatatctca actttatctt
     1261 gtcagctttc ctgtctttgc taaaaatgaa cttttcatag aaaatacttt ttatgtgcaa
     1321 atttcactcg ctttttctgg tataggagtg attttaggct ctttagtagc tggtaaattt
     1381 tcaaaaaatt atatagaact tggatttatt ccacttggtg cattgggtat gtttttaatg
     1441 gcttttttaa tgccttattt tataagttta ttaagttata gttttttatt tttctttttt
     1501 ggattttgcg gagccctttt tatcattcct ttaaatactt taatccaatt tcatgctaaa
     1561 gaaaatgaat taggacaaat tcttgcagga aataattttt ttcaaaatat tgccatgttg
     1621 ggatttttgc tcttggcaac tttatttgta aaatttgaaa tcaatgtgat ttatttgttt
     1681 tattttattg ctttggtaac ctttatagga agtttttaca tacttttaaa actccccttt
     1741 tctttagtgc gtatactttt aagcatagct tttttacaac gataccgttt acttgtggaa
     1801 ggttttgaaa atataccaga aaaaggtgga gctttacttt tgggtaatca tatttctttt
     1861 attgattggg ctgttgtaca aatggcaatt ccaagaaaaa tttattttgt tatggaaaga
     1921 agtatttatt ctaaatggta tattaaaatt tttcttgata aatttggtat tattcctgta
     1981 tcaagtacag gaagtaagac gagtttagaa ctgatagcaa agcatattaa agaaggtaat
     2041 ttagtttgct tatttcctga aggtacactt tcgcgacatg ggcaattaaa tgaatttaaa
     2101 gcaggatttg aattagcttg tgaatgttta agtgaagatg atggaaaaat tattcctttt
     2161 tatataagag ggctttgggg tagcgctttt tcaagaagtg atgaagaatt ttcagcaaga
     2221 aaccgcactt taaataaaag aaaaattgct atagcttttg gtaaagctat gcctttgcat
     2281 tctaaaaaag atgaagttaa agctaaagtt tttgaacttt cttttatggc ttggaaatca
     2341 caatgcgaag ctatgcatac tatagcaaga gcttggatag atacagctaa aaaaaatcta
     2401 aatcaaatag ctattatcga tacactagct ggagatattt cttatagaaa aatgttgact
     2461 cttagtttat ttcttaattt ttttattaaa agaaaatcca aagagttaaa cattaacctt
     2521 cagcgtggaa gttacgctcc taaagaggaa gctataggaa ttttactacc tgcttctttt
     2581 gcaagttctt taaccaatct atctgtttta atcgcagaaa aaattgcagt aaatcttaat
     2641 ttcactgctg gagaaaaagc tctaaaagca gctataaaaa atgcgcaaat ttcacaaatt
     2701 tatacttcta aaactttttt agaaaaatta gcaaataaag gtataaacct aaatttcgat
     2761 acaaatatac atttaattta ttttgaagat attgtagaag attttaaaat gcaaaaaact
     2821 aaaattttta gcatgatgct agcagttagt attataccta gttttatact caaaagcatc
     2881 ttcactcctt caaaaaacaa tcttgccatc gcagctattt tatttagtag tggaagtgaa
     2941 ggttctccaa aaggtgttat gctcaataac cgtaatattt taagcaatat agcacaaatt
     3001 tctgatgtgc tttgcacaag aaataatgat gtcattctct catctttacc accttttcat
     3061 gcttttggac ttaccgtaac tacatttttg cctttgcttg aaggtattaa aagcatcact
     3121 ttttcagatc caaccgatgc cttaggggtt gccaaagctg ttgctaaaaa taatgtcact
     3181 attatgtgtg gaacttcaac ctttttagga atttatgcaa gaaataaaaa gcttgatgct
     3241 ttaatgtttg aaagtttaag aatagttgta tcgggcgctg aaaaactaaa aaatgaagta
     3301 agaactactt ttgaaatgaa gtttaaaaaa agcatttttg aaggttacgg ggctacggaa
     3361 accacgcctg tggcgagtgt aaatttacca aatcattttg atgtggatta ttggcttata
     3421 catcgtgcca ataaagaagg aagcgtagga atgcctctac ctggaactgc ggtacgtatt
     3481 gttgatccaa ataattatga aaatttaaaa acaaatgaag atggactcat acttataggc
     3541 ggtcatcaag ttatggtagg ctatcttaat gacaaagaaa aaaccgatga agtggttaaa
     3601 gaaattgatg gcataagatg gtacaacacg ggagataagg gacatttgga tgaagatggt
     3661 tttttatata ttgtcgatcg ttattctcgc tttgcaaaaa ttggcggaga gatgatttct
     3721 ttgggtgcaa tagaagaaga aattgccaaa tttatagaca ctgaagtggt taaattttgt
     3781 gccacatctt tagaagatga gaaaaaaggg gaacaaattg ttttactcat agaatgcaat
     3841 aatgaaattt ttgaaggagt atgtgaggct ataaaaaatt ctaatatacc tacacttttt
     3901 aaacctagat attattttca aatagaaaaa attcccctcc taggttcagg aaaagttgat
     3961 cttaaaaaag ttaaagaatt agctaaaaat ttagccatat aatttgagct tataacaaag
     4021 tccaaattaa aattggcata gaaacaaaag caaaaagaac tccaaaggct acagcactta
     4081 cggctaaatt actatctagt ttagctttca ttaccatagc tcctgctaaa gtcatagtag
     4141 gagctgcact ttctataata gcaacgatgg tagaatcttt taattccaaa ttaaatattt
     4201 ttaaacaaaa tacaaaaaat aaaggagcta aaatcatttt agcaaagatg acaactattg
     4261 taggtttgta agaggtttta atcgccataa agccaagtcc taaacctata gcaaaaagtg
     4321 caacaggggt tgcagaggca ccaaataaac gaataggaga gaaaataaat tcaggtaaag
     4381 taatcaattt acacaaaaaa ccaaaaagca aagctaaaaa aggtggaaaa ctaagaattt
     4441 ttttaacatt agcaagcaaa ctgacttttt ctccatttcc caaagaaagt ataaaaggtc
     4501 caaaaagtga tataggtaaa gttgtggcta aagcatcgta aaatataact tcagcgctaa
     4561 attgtgggtc attaaatata ccagcaacaa taggcatacc cacaaatata gtatttccaa
     4621 aacaagaaag caaaaacata ctgactaaag ttactttaga aaaatgaaaa acttttccaa
     4681 taagaatagc aaaaaaagct gctagtatac agctaaacaa tccaataaaa ataaaaataa
     4741 tcaatgaaaa atcaaaattt aaatgatatg ctttatcgaa aatcaaacaa ggtaaagcaa
     4801 aaataatagc aaaatctaaa aaagtcctag cttgtttttg ctttaaaacg ccaattcttt
     4861 tggcaaaata tccgcctgca agtaaaataa aaattgtaaa taatggtata aaaacaaaca
     4921 ttgaataatc ctttttaagg gatggttttt gaaa
//
LOCUS       DARGEY010000099         4908 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.099, whole genome shotgun sequence.
ACCESSION   DARGEY010000099 DARGEY010000000
VERSION     DARGEY010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4908)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4908)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4908
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.099"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            4..779
                     /locus_tag="SF008_001438"
                     /pseudo
     CDS             4..779
                     /locus_tag="SF008_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
     gene            776..1270
                     /locus_tag="SF008_001439"
     CDS             776..1270
                     /locus_tag="SF008_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEG8233688.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIVLAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            1341..1604
                     /locus_tag="SF008_001440"
     CDS             1341..1604
                     /locus_tag="SF008_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HEG8233689.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQAPRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            1679..2629
                     /gene="czcD"
                     /locus_tag="SF008_001441"
     CDS             1679..2629
                     /gene="czcD"
                     /locus_tag="SF008_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HEG8233690.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSMDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIIGGIVVYFSGIVYIDTILAIVLSILLL
                     RWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCNLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSKNEI"
     gene            2619..2813
                     /locus_tag="SF008_001442"
     CDS             2619..2813
                     /locus_tag="SF008_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal transport/detoxification protein"
                     /protein_id="HEG8233691.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLEQKILSLNLEEN
                     QVSNFTKEFQDLGFEIVERL"
     gene            2813..>4908
                     /gene="copA"
                     /locus_tag="SF008_001443"
     CDS             2813..>4908
                     /gene="copA"
                     /locus_tag="SF008_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HEG8233692.1"
                     /translation="MEELRIKIGKMTCVNCSNAIERACKKIDGVKDASVSYVNSSGVF
                     LLEDQEKRKDIIAKIQNLGFEILEDEQSLNAYKAKKHLELRKNLLLSIVLSVIIMYFE
                     MFVKSSFSQNIQMALSFFGIFYCGRDFFSHAFLGLKSKNLDMNTLVALGTLSAFVYSF
                     LVYLQIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEISSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGAVVLNGALRIKANKKAMDSTLEQIKNLVFEAGSIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWVLKADLNTAFLHSCAVLLISCPCALGLATPIALVVASANAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKEKLSVFKHNLSKDDFDKLCQIESLSSHPIAKALH
                     KDQICDLKGEGRVIVGSGIKYKEDNDNYLVGSAQFLHENEIDTKESDIFFDSFKEYVR
                     VYFAKNKKCLGGVLLSNALKDGAKELVLNLKEQNLKTFILSGDHVKNVEKIAKELQID
                     EFHAQLKSEEKLQIIQKFKKTLFVGDGINDAAALSAASVSMSFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRGIIKLNLFWAFIYNVLCIPIAAGFIPFISLSPHIAALAM
                     CFSSITVVLNSLRLKR"
BASE COUNT         1586 a          595 c          910 g         1817 t
ORIGIN      
        1 aatatggaaa aacctgatat acaaagatta actaattttt taatcgtata tactaaaact
       61 ttgctaggtg ctggaactta tacagctagg gtggcaaaat gcgtaggaag aatagctgag
      121 gtttatggct atgagataaa tatcaatttc ttttttcatc atattacttt aaatgttgta
      181 gatatggatg ataactccat tcaaagaact tatgttatac ccaatcatca tgcccatgtt
      241 aattttaagc ttatttttga tttaagtgct ttaagctggg ctatatatga tcacaaatac
      301 gatcttgaaa aagcaaaagt cgtttttgag caaatttctc aacaaaaaaa gcattcttat
      361 ttgcttaatc ttttatttgt ttctatggca aattcagctt tttgtaggct ttttggtggt
      421 gattttggtg ctggaaattt agtatttttt gcaacttttg tgggattgtt gttaagatat
      481 attttaacta aagcaaagat tgatttaaga attcaataca tcctttgttc ttttatctca
      541 tcgtggtttg tattttttgg actggatatg ggatatacca atacttctga tgtggctttg
      601 ggttctagta tcttgtatct tatacaggag tattttttat aaattctgtg attgatatat
      661 taaaagatca tattttaatg gggcttagcc gtattatcag cgtggctatt ttgatttgtt
      721 gtatagcact tggaatttac atgacgctta gtatttcgga ttttgggatt ttaagatgat
      781 tgaatttatt ttaagagata tgttttttgc tgctgtggcg ggatttgggt ttgcttatgc
      841 ttgtaatcca cctttaaaaa cccttatttt atctgctctt ttagcggcaa ttgcacatgg
      901 gcttcgtttt accttggtgg aatattttca ttttcaaact ttagcaattg caacttttgt
      961 tgcttcattt tgcataggat gtttaggaat tgttttagca aaaatcatca aaactcctgc
     1021 tgaaattatc gctttccctg ctcttattcc tatgatacct ggaatttatg cttataaagc
     1081 gattttgtat cttatttctt ttatacgcag tgatgatttg aaggctaagt ctgaattttt
     1141 ggttcaattt tttgattatt tttttacaac tgtttctgtg actttggctc tagctatagg
     1201 agtgagtgtt accttgctta tattttttga acaaagtttt atgatgacta gacatgcaaa
     1261 aaaacattaa aacttgttgt aaatttgttt aatatttctt tttataattt taaatcaaaa
     1321 atttaaaaaa aaggtattgt atgttatgtc cagtttgtaa tgtagatttg gttatgagtg
     1381 ataggagtgg agttgagatt gattattgtc caaagtgtcg tggcgtttgg cttgatcgtg
     1441 gagaacttga caaaatcata gaacgcagtg tccctaatac agcaaatttt aaccaagctc
     1501 caagacaaga gtcaagatat aatgactcag cttatcatca gcacaatgat tactataaaa
     1561 agaaaaagaa agaaagttgg ctaggcgagc tttttgactt ttaattttta taaaaataac
     1621 aaatatttat atccttttta gcttaatatc ttaaaatgtc aagcaaaaag gatataagat
     1681 gtataaattt ttatcacacg agcctttagc taacaaatct tgtcatcata atcacgaaga
     1741 acattctcat gaacatcatc attcccatgc tgatgcaagg agtatggata aaaagatttt
     1801 aaaaatttct cttttaatga ctttttctat gatgcttgtg caatttattt attcaatcct
     1861 ttcaaattct ttggcacttt taagcgatac tttgcatatg ttttctgatg tttttgcctt
     1921 agctcttagt tttttagcca ttatagctgt agaaaaatgg caagatcatc aaaagacctt
     1981 tgggtatttt cgtcttgaag ttttagtggc ttttatcaat gctttaacca ttattttatc
     2041 ggctttattt atcatttatg aggctataga aaaatttatc aatccaaaag aaattgacgc
     2101 taaaaccatg ataattgtag ctattttggg ctttttggta aatgggatta atgctttgat
     2161 gatgtttaag ggtgcaaatt tagaaaatgt caatatgaag tccgcttttt tgcatatgat
     2221 gagcgattta ttgggttctt tagcggttat tataggtggg atcgtggtgt attttagcgg
     2281 tattgtttat atagatacga ttttagctat tgtattatca atcttgcttt taagatgggc
     2341 gattatcttg cttaaacaaa gcgctaatgt cttgcttgaa agttctcctg tggatataga
     2401 aaaagtaaga caagttttgc ttttaaatcc tagtgtggat gaggtagtgg atttgcatat
     2461 tactcaaatc actaataaaa tgctagtagc ctctatgcat ttaaaagtaa gagtttgcaa
     2521 tctaaaggaa tttgaaaaac tatctcagga tttatctcat aagttattgc atgaatttga
     2581 aatcgggcac attaccatac aacctataag gagtaaaaat gaaatttaaa gtaaaaaatg
     2641 ttaattgcat gaattgtgta aatttgatca aaaattctct tgaagatgaa tttggaaata
     2701 tagaagtgga tttggagcaa aaaattttaa gtttaaattt agaagaaaat caagtatcaa
     2761 attttacaaa agaatttcaa gatttaggtt ttgagatcgt agagcgttta taatggaaga
     2821 attgcgtata aaaataggca aaatgacttg cgttaattgt tctaacgcta tagaaagagc
     2881 ttgtaaaaaa attgatggtg ttaaagatgc tagtgtttct tatgtgaatt ctagcggggt
     2941 ttttttactt gaagatcaag aaaaacgcaa ggatatcatc gcaaaaattc aaaatttagg
     3001 ctttgaaatt ttagaagatg aacaaagctt gaacgcatac aaggcaaaaa aacacttaga
     3061 attaagaaaa aatttgctct taagtatagt tttgagtgtg attattatgt attttgaaat
     3121 gtttgttaaa agttcttttt ctcaaaatat ccaaatggct ttgagttttt ttgggatatt
     3181 ttattgtggg agagactttt tttctcatgc ttttttagga cttaaaagta aaaatttaga
     3241 tatgaatacc cttgtagctt tggggacttt gagtgctttt gtgtattctt ttttggtgta
     3301 tttgcaaatt ttcaaagaag aagatttgta ttttagtggt gcaatgatga ttatttcctt
     3361 tgtgctttta ggaaaatatc ttgaaagtaa ggctaaattt aaggcacaag attatcaaag
     3421 aattttagaa aatatagaca caaaaaagac aaaaattttg cttgaagatg aaagtatcaa
     3481 agaaatttca agttcttttg tcaaaagtgg cgatgtactt ttggtaaaag aaggagaaag
     3541 tattgttgca gatggagtag tgcttttagg gagtgcagag cttgatatga gttttttaaa
     3601 tggggagttt ttgcctgttt taaaaaaaga aggcgatgaa gttcaagcag gagcagtagt
     3661 tttaaatggt gctttaagga tcaaagcaaa caaaaaggcc atggatagta ctttagaaca
     3721 aatcaaaaat ctagtttttg aagcaggaag tatcaaaagt cctttggcaa atttagcaga
     3781 tcaaatttct aaatactttg tagggggtat aatatttttt gcttttttag tttttgtttt
     3841 ttgggtgcta aaagcagatt taaatacagc ttttttacac tcttgtgctg tgcttttgat
     3901 ctcttgtcct tgtgctttag gtcttgcaac gcctatagct ttggttgtgg caagtgcaaa
     3961 tgcggcaaaa aatttcattc ttattaaaaa tcctgctgct ttagaaaaat tagccttagt
     4021 taagtatgct ttttttgata aaacgggtac attaacaaag gaaaaattga gtgtttttaa
     4081 acacaatctt tctaaagatg attttgataa attatgtcaa attgaaagtt taagctctca
     4141 tcctatagcc aaggctttac ataaagatca aatttgtgat ttaaagggtg agggaagagt
     4201 gattgtgggt tctggcataa aatacaaaga agataatgat aattatctcg taggcagtgc
     4261 gcagtttttg cacgaaaatg aaattgatac aaaagaaagt gatatctttt ttgactcttt
     4321 taaagaatat gttagagtgt attttgctaa gaataaaaag tgtttaggcg gtgttttatt
     4381 aagcaatgct ttaaaagatg gagccaaaga gcttgtgtta aatttgaaag agcaaaatct
     4441 taaaactttt attttaagcg gcgatcatgt aaaaaatgta gaaaaaatag ccaaagaatt
     4501 acaaatagac gaatttcacg ctcagcttaa gagtgaagaa aaactacaaa tcattcaaaa
     4561 atttaaaaaa actctttttg taggagatgg gatcaatgat gcggcggctt tatctgctgc
     4621 aagtgtgagt atgagttttt caaaggcaaa tgaacttgct aaaaaaacag gagattttat
     4681 cttgataaaa gatgatttat cagcgatttt taaatgtttt aaacttgcta aaaaaacacg
     4741 cggtattatt aagctaaatc ttttttgggc ttttatttat aatgtgcttt gcattcctat
     4801 cgcggcagga tttatacctt ttatctcttt aagtcctcat atagcagcac ttgcaatgtg
     4861 ttttagttct attactgtag tgcttaattc tttaagactt aaaagaat
//
LOCUS       DARGEY010000100         4891 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.100, whole genome shotgun sequence.
ACCESSION   DARGEY010000100 DARGEY010000000
VERSION     DARGEY010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4891)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4891)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4891
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.100"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..135)
                     /locus_tag="SF008_001444"
     CDS             complement(<1..135)
                     /locus_tag="SF008_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8233693.1"
                     /translation="MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIF
                     N"
     gene            complement(200..649)
                     /locus_tag="SF008_001445"
     CDS             complement(200..649)
                     /locus_tag="SF008_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HEG8233694.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAY
                     EEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYL
                     LAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM"
     gene            complement(776..1996)
                     /locus_tag="SF008_001446"
     CDS             complement(776..1996)
                     /locus_tag="SF008_001446"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEG8233695.1"
                     /translation="MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNL
                     IDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCNATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKLILKNILNS"
     gene            complement(1990..2814)
                     /gene="galU"
                     /locus_tag="SF008_001447"
     CDS             complement(1990..2814)
                     /gene="galU"
                     /locus_tag="SF008_001447"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HEG8233696.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGRPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVISGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEVQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            complement(2896..4869)
                     /gene="acs"
                     /locus_tag="SF008_001448"
     CDS             complement(2896..4869)
                     /gene="acs"
                     /locus_tag="SF008_001448"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEG8233697.1"
                     /translation="MLNQNNQELFKPSKEFSCNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQAFEKIEWFSPFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     MGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYISPTAIRMLHADAPDEPRKYDLSTLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDVIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPGLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSKVVETIVKLAKAEFE"
BASE COUNT         1553 a          961 c          639 g         1738 t
ORIGIN      
        1 attaaaaata agtgtttttt taccacaaaa tcgtgggcct tttatgataa tatttggttt
       61 tgaaatttga ttttttcttt cataacttac ttcaaattta gggtggtttt cataaaaaaa
      121 attaagtact ttcaatttta tcctttaaaa aaggatatta taacctagtt tgtataattg
      181 gggcataaag ccccttaaat tacattttgc aagcaccttg taaagtagcg cctatcatcc
      241 aaagactttt ttcatatttt gcgatatttt cttgtgcaaa agcagctgtt gtagtatcac
      301 tttctttttc tgctgcttca ttgagttttt taaattctgc taaaagatat tcataatctt
      361 gtttgatcag ttctatgact tcaagcggag taaagcaatc ttttgcaact tttggacttt
      421 ttgcattttc cattaaaact ttttggcaag tgatagcttt ttcgccaagt tgtaaaactc
      481 tttcagcaca actatcaaaa agttctgcca tttcttcata agctttttct gtgtactcgt
      541 gtatagaaaa aaattgcaaa ccttttacat tccagtgata attatgaaat ttaacccata
      601 gatgatgagc atctgcttgc atttgtaata attgttttgt aactgacatg attgactcct
      661 ttttttaatt tttaaaatta taacataaaa ttcttaaata ataattatta ttaattaaaa
      721 atttttatta taattttaac ttaaaattat tatactcttt tttaatgaat tttgattaag
      781 aatttaatat attttttaag atcaactttc caacttccac accaggttga tcataggtgt
      841 taatccctag cataacaccg caagttgaag taaaaagttc ataataatac atcaaatatc
      901 ccgcatgcca agcatcaagt ttttcaagtt ctatcacatc aacgctcaaa ttttcagcga
      961 ttaaagcgtg catagttgca ttacattgag cgtttaaaag ttcgtgaaga ttgactttat
     1021 tacttaaaga atctaaaaat ttaaaatgaa tatcagggat aataggtgct ttttgagcgt
     1081 ctttgatttt taaaaaagtt acagttttat ttttaggtcc atccataatg agttgtaaaa
     1141 aactatgctg atctcttgct ccaatgagtg caataggagt taaacctata cgtttatagc
     1201 cttgcttttt acctaaactt tcagcaataa gctggatata ccattcatta aagcctttaa
     1261 aagcatcact atatgaaaaa agtacattga tattggcatt tttgtgtgtg caataatgat
     1321 aggctttttg taaaatttca tcttttttat gagtaaaaaa atcttcaaaa caagctttag
     1381 ctccttctaa aagagctttg gcattatagc cacaaaaaca aagcggaact atacctacgg
     1441 ctgaaagtat gctaaaacga cctcctacat ttgcagggat aaaaaagcat ttaataccta
     1501 aattttcacc ttcttgatga agttttgaat ccttatcggt aataaaaaca aagtattttt
     1561 ttaattcttg catatcaagt ttaaaatgtt caataagaag tttaaaaagc gatacaactt
     1621 ctatagtact acctgttttg ctgatgatta aaaacaaact ttcctcaagc ttgatttttt
     1681 ctaaagtctt attaaaagaa tgtgaacttg tgttatcgag tataaaaagt tctctttggt
     1741 tgcttttttc attaaaaagc atatcacgca aggcttttac accacaactt gaaccaccca
     1801 ttcccactaa aacgatattt tttatgtgtt ctttgtcttt gataaaagcc aaactctcat
     1861 cgattaaatt caaacttgta tcaataagat gataataccc tatatctcca ctttttacct
     1921 catcattaat acgatttgca taagaactta tagtgtgaat ttcactttgc ttaaaaaaaa
     1981 gtgtattgtt taacatttac ttttctcgta aaaataattt gtcgcttcta caaagccttc
     2041 tacacttcca caatcaaagc gttttccttg aaatttataa gctaaaacca taccattggt
     2101 tgcttgagtt aaaagcgcgt cggtaagttg gacttcacca ttttttcccg ctttagtatt
     2161 ttctaaaatt ccaaaaatat caggagttaa aatatatctt cctatgatag caagattact
     2221 tggagcttca tcaggacttg gtttttctat catagaatta accatgataa gattttcttc
     2281 tacaaaattt ccagaaatta ctccatagtt tgaaacttgc tcttttggta cttccatcac
     2341 agctatgatg gtgcagcgat atttttcata aatttttacc atttgagcca taacatttaa
     2401 gccttcttca ttgacacaca aatcatcagc taaaattacg ccaaaagctt catcgccaac
     2461 caaaggtcta ccttttaaaa ccgcatcacc taaacctttc atttgatttt gtcttgtaaa
     2521 agtaaaggtg caacgattga tcaaagagcg aatttcatca agtaagtatt ctttttttgt
     2581 acctgaaatt tgatgctcaa gttcataaga aatatcaaaa taatcctcca aagctctttt
     2641 tccacgccct gtgacaaagc ccatattttc cattcctgct tccaaagctt catcaacacc
     2701 ataatggatc aaaggtttgg ttaagatagg taacatctct ttaggtaaag tttttgttgc
     2761 aggtaaaaat ctcgtcccat aacctgccgc agggaaaata caagtttgaa gcataaaaat
     2821 ttccttttat ttttttatca ttatagctta tttttatgaa ttttcatgca actaggcaaa
     2881 gttctttttg ccttgttatt caaactctgc cttagctaat ttaacaatgg tttctactac
     2941 tttagaatct tcaagtgttg aaatatcctg tttgatttct tcgcctcttg ctatagttct
     3001 taaaattctt ctcattattt taccgcttct agtttttggc aaacctggag tataaagaat
     3061 tttttctatt ttagctatag gtcctatttc tactcttaaa atgtcattaa gttcttttaa
     3121 agtttctata gctccgccaa gatcacaact ggatgcagga cttaaaacca caaaagcaaa
     3181 caatgactcg cccttaatca catccaaaat actcactaca gctgattctg ctacacttgg
     3241 atgtttagca atagcgcttt caatttcagc cgttcctata cgatgtcctg caacattaac
     3301 cacatcatct gttcttcctg tgatggtaat ataaccattt ttatcataaa aagcaccatc
     3361 gccactaaaa tatacagctt ttccatcttt tttagcttga gaaaaataac tttctatata
     3421 gcgttcatca ttaccccaaa ttccacgaat catcgaaggc caaggtttgg ttatacaaag
     3481 caatccatct tcaccttcat cttttttatt gccttcttca tcaataactt ctgcaaaaat
     3541 tcctggcaaa ggcaaggtag cacaacctgg ttttaaagga gtagcgcctg gtaaaggcgt
     3601 gatcatatgc ccacctgttt ctgtttgcca ccaagtatcg actataggac ttttagttcc
     3661 ccctatttca tcataaaacc acttccaagc actaggattg ataggctctc caaccgttcc
     3721 aagcacttca agcgtactta aatcatattt tcttggctca tcaggtgcat cagcatgaag
     3781 cattcttatg gcagttggcg aaatgtagaa tttgcttatt tgatactctt ctatcattct
     3841 ccaccaacgc ccagaatttg gataagtagg agttccttca tgcattatag tcgttgctcc
     3901 acatgctaaa ggcccataaa ctacataagt atgtcctgta atccaaccca catcagcact
     3961 acaccaataa ttatcataat ctttaatatc aaaaacccat tccatagtca tttgtgccca
     4021 aagtatatat cctgcacttg catgcataac tccttttggc ttacctgttg atcctgaagt
     4081 gtaaagcaaa aacaacaaat cctcactatc cataatttcg ggttcacact tataagactc
     4141 atttttcaca agttcgttat aaacatagtc ccttccttta atatattcta taggctcatt
     4201 attgcgtata actataagta ctttttctac actttcacac ccttcactta aagccttatc
     4261 tactgcaggt tttaacatat aaggtttgcc acgacgaaaa gcaccatcag ctgttactac
     4321 aagtttagct cctgcatcta taatcctatc tcgcaaagct tctggagaaa atcctccaaa
     4381 taccacacta tgaatagccc caatccttgc acaagctaac attactatag ctgtttctgg
     4441 aatcataggc atataaatta caaccctatc gccttttttt actccgaatt ttttaagcaa
     4501 attggctgcc ttgcaagttt catgcaataa tcttctataa gtataaactt cataatcccc
     4561 catttcacct tcaaaaatca aagcagcttt attgcgtctt gttttcatat gacgatcaag
     4621 acattgataa cttacattta aagttccacc ttcaaaccat ttataaaatg gagctttatc
     4681 ctcatttagc actcttgaaa aaggcgaaaa ccactcaatc ttctcaaatg cttgtctttt
     4741 ccaaaaacct tcaaaatctt ccttggcttc atcgcataaa tcatagtatt cgcataaatt
     4801 ttttatacga gcattacaag aaaattcttt acttggctta aaaagctctt gattattttg
     4861 attaagcata aaaactcctt atatagttat t
//
LOCUS       DARGEY010000101         4882 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.101, whole genome shotgun sequence.
ACCESSION   DARGEY010000101 DARGEY010000000
VERSION     DARGEY010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4882)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4882)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4882
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.101"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(137..895)
                     /gene="map"
                     /locus_tag="SF008_001449"
     CDS             complement(137..895)
                     /gene="map"
                     /locus_tag="SF008_001449"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEG8233698.1"
                     /translation="MIELKKPDEIEKLRIANQIVAKTLNFLENEIKIGMSLKQIDKMA
                     EDYILSLGAKPSFKGLYGFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGEVSPTDKALISCAKDALYHAIDIIRDGMRFKELSAALGEFIHARGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHY
                     NGKWDAGSIDGLNAAHYEHCVAVINGRAEILSMI"
     gene            complement(905..1648)
                     /locus_tag="SF008_001450"
     CDS             complement(905..1648)
                     /locus_tag="SF008_001450"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEG8233699.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALEFFEQFQIDMLIIACNTASAYALDALRTKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKEKENID
                     LKNHKAKLHFYASSDVESLKNTAKIWLNL"
     gene            complement(1650..2108)
                     /locus_tag="SF008_001451"
     CDS             complement(1650..2108)
                     /locus_tag="SF008_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEG8233700.1"
                     /translation="MRHIFFIITIIFFISGCSFYQNLNYRPSYNTNKEARLKVIANEW
                     KKTPYVLGGTTKKGADCSGFTQSALTQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLVF
                     FKTGRGPNGMHVGIYMSKGKFIHLSTKGGVKEVELNSSYWKARYIGARRY"
     gene            complement(2117..3286)
                     /gene="nhaA"
                     /locus_tag="SF008_001452"
     CDS             complement(2117..3286)
                     /gene="nhaA"
                     /locus_tag="SF008_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEG8233701.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFALVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIVAFVVAGLAILVMLILNLLGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIVTAFFIPMQTKNGEAFLEEIYESLKFWIAFIILPLFAFANAG
                     VNLSNIDIGAIFSGVSIGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFTTRS"
     gene            complement(3283..4431)
                     /gene="nhaA"
                     /locus_tag="SF008_001453"
     CDS             complement(3283..4431)
                     /gene="nhaA"
                     /locus_tag="SF008_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEG8233702.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSVIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFIAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEHADKLAILIASFLSAIVGFIYLKIVK"
     gene            complement(4575..4757)
                     /locus_tag="SF008_001454"
     CDS             complement(4575..4757)
                     /locus_tag="SF008_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HEG8233703.1"
                     /translation="MVSDVSMGNVNLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASAPQASSSSGLDIYA"
BASE COUNT         1857 a          915 c          583 g         1527 t
ORIGIN      
        1 attctaaaaa cacttaatct gctataaaaa tatcatttag taacttaaat tattaaagaa
       61 tattactaca atattattta aaaaatttta aatttttagg attttaagaa aaaaatatta
      121 tttttataat ttaatatcat atcatagaaa gaatttcagc acgcccatta atcacggcaa
      181 cacaatgttc ataatgagcc gcattcagcc catcaatact tccagcatcc cattttccat
      241 tataatgctt tggtgttcca tctttttggc atatcatagg ctctatgcaa aacaccattc
      301 catttttaat tttagggcca ctttttgcac tcgcaccttt ttctaaatag tttaaaattt
      361 caggctctcc atggggcttt cgtcctatac catgcccgca atatccacga agcgggacaa
      421 aacctcttgc atggataaat tcgcctaaag cagctgaaag ttccttaaaa cgcattccat
      481 cacgaataat atctatagca tgatataacg cgtctttagc acaagagatt aaagctttat
      541 cagtgggtga aacttctcct atagcaatag ttcttgctgc atccccataa tacccatcaa
      601 tcaaacttcc cacatcaaga cctaaaatat caccctcttt gataatttta tcatctggaa
      661 ttccatggat acaaacttga tttaaagatg tgcaaatggc acctggaaaa ccataaagtc
      721 ccttaaatga tggcttggcg ccaaggctta aaatataatc ttctgccatt ttatcgattt
      781 gttttaagct cattcctatt ttaatttcat tctctaaaaa atttaaagtt tttgctacaa
      841 tttgatttgc tattcttaat ttttctattt catctggttt tttcaattct atcattttat
      901 ttccttataa atttagccaa attttagcag tattttttaa agattcaaca tcgcttgaag
      961 cataaaaatg taattttgct ttatgatttt tcaaatctat attttctttt tctttaagaa
     1021 attcaactat agcatctcct gaatgaatta attttgtttt atcaccaaaa tacttactta
     1081 aagaacgacc tagtaaaggg aaatgagtgc aagcgagtat caaagcatct ggagttgtga
     1141 tatttttaaa ataatactcc atagcacttt gcaaaaaatc tccttcaaaa ataccttctt
     1201 caaccatagg cacaaaaagc cctgtagcta aagcatttat atttgtatat ccttgggata
     1261 ataaacgctt ttggtattct tctgatttaa tggttgcttt tgttgcaatg actaaaattt
     1321 ctttattttt atcatgcaaa gcttttatcg ttgcttcaac ccctgcatca attacaccat
     1381 atactggaaa atgtgctttt gtccttaaag catctaaagc ataagcacta gcagtattac
     1441 atgcaatgat aagcatatca atttgaaatt gttcaaaaaa ttccaatgct tcaagacaga
     1501 actttataat agtatcttta tcttttactc cataaggaac tcttgcagta tctccataat
     1561 agataatttc atcaaaaagt ctagcttcat aaagagattt taaaacgcta agccccccta
     1621 ccccgctatc aaatacacct attttcactt taataccttc ttgctcctat ataacgagcc
     1681 ttccaataag aactatttag ctcgacttct tttactccac ctttagtaga taaatgtata
     1741 aattttccct tgctcatata aataccaaca tgcataccat ttggccctct acctgtctta
     1801 aaaaatacca aatctcctgt ttgcaatttt gatttagaaa cttttcttcc agaacctaat
     1861 tgagtttttg tagtgcgagg tatgcgtata ttaagctgag ttaatgcgct ctgtgtaaat
     1921 cctgaacaat cagcaccttt tttagtagtt ccacctaaaa cataaggggt ttttttccat
     1981 tcatttgcaa taaccttgag ccttgcttct ttatttgtgt tgtaactagg acgatagttt
     2041 agattctgat aaaaactaca tccacttata aaaaatataa tcgtaataat aaaaaaaata
     2101 tgcctcatca atccccttaa gatcgagtag taaagaattt aagataaata aaaccccaaa
     2161 tcccagaaca aaatgaggct ataagaatag ctaagttatc tgcataatta aaaatatcac
     2221 taacttcata cgccaatcca tcaataaaca aactcattgt aaaaccaatt cctgtaagta
     2281 tgcaaacccc ataaagttgt ttcaaatttg aaccttgggg caaagctgca aatttaaagc
     2341 ggattgccaa ataagaaaat aaaaatacac ccacttgttt acccacaaaa agccctaaga
     2401 aaatacctat acttacacct gaaaaaattg ctcctatatc gatattggat aaatttactc
     2461 cagcgttagc aaaagcaaat aaaggtaaaa taataaaagc aatccaaaat tttaagcttt
     2521 cataaatttc ttctaaaaat gcttccccat ttttagtttg catcggtata aaaaatgctg
     2581 ttacaattcc agctaaagtt gcatgtactc cactttttaa aacactaatc caaagaataa
     2641 ctgagcaaat aaaataaaaa gactttcttg ttatccctaa aagatttaaa ataagcatta
     2701 ccaaaatagc aagtcctgca acgacaaaag caactattga taattttgtc gtataaaaaa
     2761 tagctataat taaaatagca cccacatcat caaaaatagc caaagaaagt aagaaaattt
     2821 ttaaacttga tggaatgtgc ttgccacaca tcattaaaat cgctaaggca aacgctgtat
     2881 ctgtggctgt aggtatagcc caacctttta aagtataagc atctcctata tttaccaaag
     2941 caaacaacat cgcaggtata agtatacccc ctaaagcagc cataaaaggt aaaacaatat
     3001 ttttaggatt tttaaaatcc ccatgcaaaa attccttctt aagctcaagc cctatagcaa
     3061 agaaaaatat agatataagc ccatcattta tccaaagtaa aaaaggcttg ttaagctcaa
     3121 attcacctac actaaatccg acttttaaat ttagaaattc tcgataatgt tcgctaaaag
     3181 acccgttttg cacaagcaaa gcaagcaaag tacaaactat aagtaaaaca ccaccaaaag
     3241 cctcgtttaa aactaaagtt tttaatttat gtactatatt attcatttaa caatcttaag
     3301 ataaataaaa ccaacaatgg cacttaaaaa acttgctatt aaaatagcaa gtttatccgc
     3361 atgttcaaaa atatcactat ttttataagc caaaccatca ataaacaaac tcatcgtaaa
     3421 accaatgcct gttaaaatac atataccata aaattttcca tatttaatat tttcaggtag
     3481 ttttgcaagc ttaagtttga tagcaataaa acaaaaagta aaaacaccta gttgctttcc
     3541 taaaaataat cctagaataa ttccaaggct tacaggcgag aataccgaac caagatgcat
     3601 atctctgata tcaatcccag cattggcaaa agcaaataaa ggtaaaataa aataaaccac
     3661 ccaaggattt aaatccttaa gaacttcatg caaataaggt tttttatttt ttgtatcaag
     3721 cggtataaat aaagaaataa tcacaccagc caaagtcgca tgtactccac ttttaagcat
     3781 agctatccac aatacaacac ctactaacac atacaaagaa agatgggtga tgtgataata
     3841 atttaacaaa agcagagcaa atatacaaaa caaacaaata ataatcgcca aagctgaaag
     3901 ctgatctgta taaaataaag caataataac aatagcaccc aaatcatcaa aaatagctaa
     3961 agaaagtaaa aaaagcttta aacttgtagg aattttattt cctaaaagca tcaaaatacc
     4021 cactgcaaaa gctatatcag ttgctgtagg tattgcccaa cctttcatag caaaatcatg
     4081 agaataatta atagcaataa aaattaaagc cggagtaatc atacccccta aagctccaaa
     4141 tataggtaaa gatacagctc ttatattttt aagttgccca cgtaaaattt catattttaa
     4201 ctcaagccct atacatagaa aaaatatagc tatcaaacca tcatttatcc ataaatccaa
     4261 cgactttgaa atttgaaaat gatcaaatcc tactgtaaaa ttagcatgaa aaaaatctgt
     4321 ataaataaca cttaaagaag aatttttaca taataaagct aaaaatgtaa aaaatataag
     4381 caaaatacca gggaaagttt cacttaaaac catcttcttt atcatttgca tccttgctcc
     4441 taagtaaata tttgtaaaaa atttaatacg ataaataaaa tggtaaaatt ataacgaaaa
     4501 aatactaaag aaataattat ttaaaaaaac aagcccaaga taccaaaaag ttcttaagct
     4561 tgttcttaag atatttaagc gtaaatatct aaaccactag agctagaagc ttgtggagcg
     4621 gaggcttgag agacaccttc cataccttcg atgagttcat tcatcaatgc ctcgtttgtg
     4681 tccatagatt ttttcaaaac tgaagtatta acagcagtca ttaaattaac attacccata
     4741 gaaacatctg aaaccataca tcctcctttt agattgagtc ttaagacttt atttaaatcg
     4801 gatgatattt ttaaaactta atatttttta ctaaactttt taaaattttt caaggaagcc
     4861 aatatctgaa attaaaaatc at
//
LOCUS       DARGEY010000102         4835 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.102, whole genome shotgun sequence.
ACCESSION   DARGEY010000102 DARGEY010000000
VERSION     DARGEY010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4835)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4835)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4835
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.102"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..363
                     /locus_tag="SF008_001455"
     CDS             <1..363
                     /locus_tag="SF008_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEG8233704.1"
                     /translation="KEIFTLFEKSQLPYIRDAMYAVANEQGGTSYRYLHNLDVKVAAK
                     TGTAQVVGFSQTDKNRVDEKQFEYYTRSHAWLTSYAPYSKPKYVVTVLLEHGGRNITS
                     GATVAKIYQKMIELGYFK"
     gene            complement(484..2274)
                     /locus_tag="SF008_001456"
     CDS             complement(484..2274)
                     /locus_tag="SF008_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEG8233705.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDAKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLQINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNATSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KVLLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEKLANTNLLIEPSKMTALLMNS
                     LDKSVKIIQEINPSTHLKAAKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIENKELIS
                     ELDIDTKASEFRAQSKYYISDSFATIAGFNKNAAYPHYKATKDSFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHIAISSAIFPKDVAMPLLDAIARV
                     PLWKEQIDYMHGTGHGVGYFLNVHEGPQVLSYLSPMLEKTKAKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFEKLSPKLGDFPKALVWLEKRTKAIF"
     gene            complement(2271..2645)
                     /locus_tag="SF008_001457"
     CDS             complement(2271..2645)
                     /locus_tag="SF008_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-/tripeptide transporter"
                     /protein_id="HEG8233706.1"
                     /translation="MMMTFASQNLINNNGLPISMAWIIISIFFLTLGELCVSPIGLSI
                     MAKVAPDLIKNQIMGLWFVASALGNALAGFIGGKASEENIAYLPNLFYQCMWILLGAV
                     IILLILKKPINKILKINIKEKI"
     gene            complement(2672..2923)
                     /locus_tag="SF008_001458"
     CDS             complement(2672..2923)
                     /locus_tag="SF008_001458"
                     /inference="COORDINATES: protein motif:HMM:NF013050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233707.1"
                     /translation="MNNFNCFILCGHFFWSTFEQKPTAYNLFAQDFTNRNIFDWKIPT
                     NWFQSFNPIFIIILAPIASYIWIFLEKKIYIFLPLENLL"
     gene            complement(3025..3501)
                     /locus_tag="SF008_001459"
                     /pseudo
     CDS             complement(3025..3501)
                     /locus_tag="SF008_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865666.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(3510..3704)
                     /locus_tag="SF008_001460"
     CDS             complement(3510..3704)
                     /locus_tag="SF008_001460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233708.1"
                     /translation="MTKQEIQKLDTNFLGHRKPLFSLSMVELWERFAFMVFLQELVFS
                     STLPGGWITDNYSGQKRLYF"
     gene            complement(3830..4378)
                     /locus_tag="SF008_001461"
     CDS             complement(3830..4378)
                     /locus_tag="SF008_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233709.1"
                     /translation="MNKIEVFLQNLNPREKFLFISFICLCALFLAFKIHDHFLEDIFQ
                     KTLVEHNYLALNEAKIENSHLKEIETKLTKQIKIEEEKLKYYKEKLHLFSYDKDFFNK
                     KINNLSKNLIINEIKFSQENKNFIHYNYVSLSLNGNFKDLLNFIQNLENLPIALKIDK
                     IKLYNTQGLKLKLDLMFKFVNL"
     gene            complement(4371..>4835)
                     /locus_tag="SF008_001462"
     CDS             complement(4371..>4835)
                     /locus_tag="SF008_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233710.1"
                     /translation="IFIFSFSLSMMILLFKDFIEYKQNKEIQNKNFIIQEEISKLKQD
                     KQKLLTNIQDLNFTLSNKISSTQQQFHILSTITKEINLDKNKAIILNQIISWLNSNDL
                     KITNLEFEQTKIILSFIDENHFKRALENLNSAFKILDKNEETFNIILEVIHE"
BASE COUNT         1647 a          678 c          684 g         1826 t
ORIGIN      
        1 aaagaaattt ttactttatt tgaaaagagt caattgcctt atataagaga tgcaatgtat
       61 gctgttgcta atgagcaagg aggaacctct tatcgttatt tgcataatct tgatgtgaaa
      121 gttgcagcaa aaacaggaac tgctcaggtt gtgggatttt cacagacaga taaaaatagg
      181 gtcgatgaaa aacaatttga gtattatact agatctcatg cgtggcttac ttcttatgct
      241 ccttattcta agccaaaata tgtagttacc gttcttttgg agcatggtgg gagaaatatt
      301 acttcagggg caactgtagc taaaatttat caaaaaatga ttgaacttgg atattttaaa
      361 taatttttag ttgtaaattg agtttttcaa aaaaaacttt tttagcaatt ggtttaaaaa
      421 ccttgtatta aacaaattat aagtttaata caaggaaaat ttatctatgt taacaaaagt
      481 atcttaaaag atggcttttg ttcttttttc aagccaaact agagcttttg gaaaatcacc
      541 tagcttagga gaaagttttt caaatacttc tttgtggtaa ttgtttaacc actctttttc
      601 tttttcatct aacatttttg tatcaataca agatatttca aaaggacaaa gagtaacagg
      661 tttaaagtat aaaaattctc caaaatcttt atttttagga ttttctactt tggtatgaat
      721 aactaaattt tcaagtctta taccccattt gcctacttta taaatacctg gctctatgga
      781 agttagcata ccttctttgg cttttgtttt ttcaagcata ggggatagat aagataaaac
      841 ttgtggacct tcatggacat ttaaaaaata tcccacgcca tgtcctgtgc cgtgcatata
      901 gtcaatttgt tctttccata aaggtacgcg tgcgattgca tcaagtaagg gcatagctac
      961 atcttttgga aaaattgcac tagaaatggc aatatgtgct tttaaaacca aggtatagtc
     1021 atgaatttgt tctgcattag cctttcctat aggcacaacg cgtgtaatat ctgttgtgcc
     1081 gtttttatat tgtccaccag aatcaataag taaaagccca tcttttttaa gataagcaaa
     1141 actgtctttt gtggctttat aatgtggata tgctgcgttt ttgttaaagc ctgctatagt
     1201 ggcaaagcta tcacttatgt agtacttgct ttgcgctcta aattcgctcg ctttagtatc
     1261 tatgtccaat tcgcttatta attctttatt ttctatcgct tcttcaagcc aagcaaaaaa
     1321 tttacataaa gccactccat cttctatcat agcatcttgt atatgcgcta tttcttttgt
     1381 atttttagct gcttttaaat gagtgcttgg attaatttct tgaatgattt ttacgctttt
     1441 gtctaaagaa ttcatgagta aagcggtcat ttttgaaggt tcaataagca aatttgtatt
     1501 tgcaagtttt tcaagctcca tgatgatttc atcataattt ttaagccaaa acccatctaa
     1561 atttaatttt ttttcaagtt ctgaatttac ttttttctga tcaacaaaaa gcaaaacttt
     1621 gtcttccaag attagtaaat gacttaaaaa tacaggattg taatttacat cattccccct
     1681 taaatttgta agccaagcta tatcatcaag gctggagatt aaatgagaag tagcatttaa
     1741 atttttcatt ttttgacgca ctaatgctaa tttttctttt cttgagtaag agcagtattc
     1801 tagttcgtgt tcataaattt tttcttgtgg taaagtggga cgatctttcc aaagtggact
     1861 tatcaaatct atatgtttta aatttgcctt gcaattaatc tgtaaatctt tttgtaaaga
     1921 taaaggtaaa agtgcaaaat cgatgcctaa aatttgatct tcgcttaaat ttttttccaa
     1981 ccatttggta aaagtatttt tagcatcttg cttttgtaaa agtatgccac taccttctaa
     2041 ttccttttgt gcttgaagcc aatatcttcc atctacccac aaaaagccct cttcttgcgt
     2101 gataagaact gttccaacag aacccttaaa gccactgata aagactctgt ttttgtaata
     2161 ttctggtaaa tattcgctca aatgcggatc cgcacttaag atgagatagg cgtcaatatt
     2221 attttctttc attaatcttc taagttctaa tactctttgt ttgtaaatac tcatattttc
     2281 tccttaatat taatttttag tattttattg ataggttttt tgagtataag taaaattata
     2341 acagcaccaa gtaatatcca catacattgg taaaataaat ttggcaaata agctatattt
     2401 tcttcacttg ctttaccacc tatgaatcca gctaaagcat tgcctaatgc acttgctaca
     2461 aaccaaagtc ccatgatttg atttttgatt aaatcagggg caaccttagc cattatagag
     2521 agtccaatag gagacacgca tagttcccca agtgttaaaa agaatatact tatgataatc
     2581 caagccatgg atattggtaa accattgttg tttattagat tttgtgaagc aaaggtcatc
     2641 atcataaaac caataccggc aaataatatt cctaaagtaa attttccaat ggaagaaaaa
     2701 tatatatttt tttctctaaa aatatccaaa tataacttgc tataggagca agtatgatga
     2761 taaaaattgg attaaaagat tgaaaccagt ttgttggaat tttccaatca aaaatatttc
     2821 tatttgtaaa atcttgcgca aaaagattat aagcggtagg tttttgttca aaagtactcc
     2881 aaaaaaagtg gccgcaaaga ataaaacaat taaaattgtt aattgctgtt tttctctttt
     2941 atttaaggtt ttaaaaacaa aaaaatatat gaaataaatt accaaacata gtaaaattac
     3001 aattagaagt ttttttgata gtattatggg attaatatct gcaagattaa taaaaattag
     3061 aaaaaatcca ataatactta acaagcttat acttagtata agagttaaat ttttactttt
     3121 tttaaatggt tgttcccagt tttgctttaa agtacaattt ttatgaaatt cttcaagttc
     3181 aggggtagct ttaaaatata aaataagcaa agagattagc atacctaaac ctcctatgcc
     3241 aaatcctaaa tgataattcc attttgcttg aacaaaacca catataagag gagcaatgaa
     3301 tgctccaatg ttaattccta tataaaaaat cgtatagcca gtatcgcatc ttgtatcatt
     3361 ttgtttatat aacattccaa ctgttacaga agcgttagtt ttaaaaaatc cagtaccaat
     3421 aacgataaaa gtaagcccta ggaaaaacat aggtgtgctt aaaatagata aggctatgct
     3481 aatatgtcct aaagttataa taaaagaacc tagaaataaa gccttttttg ccctgaataa
     3541 ttatcagtaa tccagcctcc aggaagcgtg ctgctaaata caagctcctg caaaaatacc
     3601 ataaaagcaa atctttccca aagttctacc attgatagag agaataaagg cttgcgatga
     3661 cctaggaaat ttgtatcgag tttttgtatt tcttgtttag tcacttccca atacctttct
     3721 tttttatgtt taaaatattt taactaatag taatagaaaa ataattaaat tacaatattt
     3781 ttaaatattt ttttataata atatttaaaa atataatatt ttaatattat tataaattaa
     3841 caaatttaaa cattaaatca agctttaatt ttaaaccctg tgtattgtat agttttattt
     3901 tatcaatttt taaagctata ggaagatttt ctaaattttg tataaaattg agtaagtctt
     3961 taaagttgcc atttaaactt agagaaacat aattatagtg aataaaattt ttgttttctt
     4021 gggaaaattt tatttcatta atgattaaat ttttggataa attattgatt tttttattga
     4081 aaaaatcttt atcataagaa aataaatgca atttttcttt atagtatttt aatttttctt
     4141 cctctatttt tatctgtttt gttagctttg tctctatttc tttaagatgt gaattttcta
     4201 tttttgcttc atttaatgca aggtaattat gttctactaa tgttttttga aaaatatctt
     4261 ccaaaaagtg atcgtgaatt ttaaaagcta aaaacaaagc acaaagacag ataaaagaaa
     4321 taaaaagaaa tttttcccta ggatttaaat tctgcaaaaa tacttctatt ttattcatgt
     4381 atgacttcta atatgatatt aaatgtttct tcatttttat caagaatttt aaaagcagaa
     4441 tttagatttt ctaatgctct tttaaagtgg ttttcatcga taaaagaaag aatgattttt
     4501 gtttgttcaa attcaagatt tgtgatttta aggtcattgg agttaagcca tgatatgatt
     4561 tgatttagaa tgattgcctt atttttgtct aaattgattt cttttgttat ggtggataaa
     4621 atatgaaatt gttgttgtgt agatgatatt ttattggaaa gagtaaagtt taaatcttgt
     4681 atgtttgtta ataatttttg cttatcttgt tttagtttag aaatttcttc ttgtatgata
     4741 aaatttttat tttgaatttc cttattttgt ttgtactcta taaaatcttt aaataataaa
     4801 atcatcatgc taagactaaa gctaaaaata aatat
//
LOCUS       DARGEY010000103         4797 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.103, whole genome shotgun sequence.
ACCESSION   DARGEY010000103 DARGEY010000000
VERSION     DARGEY010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4797
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.103"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(84..1232)
                     /gene="nspC"
                     /locus_tag="SF008_001463"
     CDS             complement(84..1232)
                     /gene="nspC"
                     /locus_tag="SF008_001463"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HEG8233711.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAI
                     EGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMLLDRKNELQMIREFSYKDYSLRN"
     gene            1356..2897
                     /gene="cueO"
                     /locus_tag="SF008_001464"
     CDS             1356..2897
                     /gene="cueO"
                     /locus_tag="SF008_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HEG8233712.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     EERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDK
                     MMVKEESNTLFLASISLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGK
                     SENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            2899..3120
                     /locus_tag="SF008_001465"
     CDS             2899..3120
                     /locus_tag="SF008_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEG8233713.1"
                     /translation="MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFDENTKLKTGDKIALLPPVCGG"
     gene            3121..3567
                     /locus_tag="SF008_001466"
     CDS             3121..3567
                     /locus_tag="SF008_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEG8233714.1"
                     /translation="MEHFTLYQDSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGG
                     IEALSFDIYEPLLKKWFNEWQKRVDFDGITLLFAHSIGDVAVHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            3571..4761
                     /locus_tag="SF008_001467"
     CDS             3571..4761
                     /locus_tag="SF008_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEG8233715.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENIRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDI
                     IFMP"
BASE COUNT         1748 a          766 c          772 g         1511 t
ORIGIN      
        1 aaaaataaaa tactttgcat aaaatttaca tctttaattc tcttccgagt aaaattaaca
       61 ttttatgcaa attataaata atactaattt cttaaagaat aatccttata agaaaattct
      121 cttatcattt gaagttcatt tttacggtct aaaagcatga gatttggaag tcttatacca
      181 ttaaaagttg tgtttttcac aatggtgtaa tgaatttgat ctaaaaaaac aattttatcg
      241 ccgattttaa gctttttatc aaaggcgtat tctcccatta catcacctgc taaacaagta
      301 tttccagtaa gcaaatagga aaattcgctt tcttttaagt ctgaaatttt ttcattttct
      361 cttgtggcca aaattctagc atttaaaact tcacttgtat aaggcatgat gatagtatct
      421 ggcatatgtg cttcgcttga agtatctaaa atagcaattt gtttttcatt ttctatgata
      481 tctactacac tagccaccaa atttcctgtt tgccaaccca ccgcttcgcc tggttcaaga
      541 taaacttgca cgccatattt atcactgaaa tttttacaca aagcaataag tttttcaaca
      601 tcatagcctt ttttagtgat gtgatgtcct cctccaaaat tcacccattt catttgccct
      661 atccatttgc caaatttctc ttcaaaagcc tttaaaactg cttctaaagc atcagcactt
      721 tcttcacaaa gtgcgtgaaa atgaagtcct tctatagcat ttaaatccac attttcaaaa
      781 tctttagcac gaattccaag tcttgagtat cttccacaag gattgtaaag ttcttttggg
      841 gctagagaaa attcaacatt acaacgaaga cctaaggaat ttttttgtgt tttagcttga
      901 aatttatgaa attgggctaa agagttaaat actatatgat gagataaact ggctatttca
      961 cctatttcat cttctttaaa agcaggtgaa taagtatgaa tttctttatc catgtattct
     1021 ttagcaaatt ttgcttccca aagtccgcta caagtacaac cttttaggta ttctccaaca
     1081 attttcatcg ctcctgaaaa agcaaaacct tttaaagcta aaagcacttt agcaccactt
     1141 ttttcaccaa cacttgctaa aagctcacaa ttttttctta atttatcttc ttctaaaata
     1201 taagctggag tttgaatttt ttcataaaac attatttttc cttgattaaa ttgctaaaat
     1261 cataacaaaa ttaaaccaaa ttttcaaaat aaatatttac taaagttaaa aaaataatga
     1321 ctataataca aaaaatcaag caaaaggaaa aactaatgaa tagaagaaat tttttaaaat
     1381 ttaatgcact tactctagca agtatgggtg tagcctatgc aaatcctatg cacgatatgc
     1441 actccatgca taaaaatcat tctataaatc atgacttaga tacttctttt ataaactttg
     1501 ctccaaaaaa tttaaagctt ttagatccaa aacaattccc ccaaggagaa attttaaaag
     1561 ccttgccttt actcaaaaat gaaagtaaag aaaaaaatat ttttcgtgct accctagaaa
     1621 tcaaagaaaa tcatatagag cttatcaaag gtaaaaaaac cttattttat acttacaatg
     1681 gcctcgtgcc tgctccaaaa atagaagttt ttgaaggaga taaacttgaa attttagtca
     1741 aaaacaaact caaagaagct acaactatac attggcatgg cgttcctgtg ccacctgatc
     1801 aagatggaag cccacatgat cctatcttag caggagaaga aagaatatat cgttttgaaa
     1861 ttcctcaaga tagcgcagga acttactggt atcatccaca tcctcattat acggcttcta
     1921 aacaagtttt tatgggttta gcaggggctt ttgtgatcaa agcaaaaaaa gatgctttaa
     1981 gtcatttaaa agaaaaagat ttgatgatta gcgatttgcg tcttgatgaa aacgctcaaa
     2041 ttccaaacaa caacctaaat gattggctaa atggtagaga aggagaattt gtactcatca
     2101 atggacaatt taaacctaaa atcaaactcg ccacaaacga acgcatacgc atttataatg
     2161 ctactgcagc aagatattta aatttacgca tacaaggagc taagtttata cttgttggta
     2221 ctgatggtgg acttatagaa aaagctattt ataaagaaga acttttctta agtcctgctt
     2281 ctcgtgtaga agttttaatc gacgctccaa aagatgggaa ttttaagcta gaaagtgctt
     2341 attatgatag ggacaaaatg atggtaaaag aagaatctaa taccctattt ttagctagta
     2401 ttagcctaaa aaaagaaaaa ttagaacttc caaaaaattt aaaaattttc aaacctttag
     2461 aagaacctaa ggaatttaaa gaaataatca tgagtgaaga tcatatgcaa atgcatggaa
     2521 tgatgggaaa aagtgaaaat gaattaaaaa tcgctcttgc gtctatgttt ttaatcaatg
     2581 gcaaaagcta tgatttaaaa cgcattgatt taagctccaa gcttggagta gttgaagact
     2641 ggatagtgat aaacaaatct cacatggatc atcctttcca catacacggc acgcaatttg
     2701 aactcatctc atcaaaactc aatggcaaag ttcaaaaagc cgaatttaga gccttcagag
     2761 atactataaa tgtgcgtcct aatgaagagt taagacttag aatgaaacaa gattttaaag
     2821 gacttagaat gtatcattgc catattttag aacatgaaga tttaggaatg atgggaaatt
     2881 tagaagtaaa ggaataaaat ggtaaaagtg gaatttttag gccctataaa taaagaaaat
     2941 ttagaacttg aagtaaaaaa tttaaaagaa ttaaaagaaa ttttgcaaaa agatgagagt
     3001 ttaaaagaat ggctagaact ttgtgcggta tctttaaatg atgaaatcat ttttgatgaa
     3061 aacactaagt taaaaactgg tgataaaata gcacttttac cgccagtttg cgggggttaa
     3121 atggaacatt ttacactcta tcaagattct ttagatattc ctaaaattta tagccaatgg
     3181 tatgaatttg ccaaggataa aaactgcggt gctttgctga ctttttgtgg tattgtgcgt
     3241 gaagaaggag gcattgaggc acttagtttt gatatttatg aaccgctttt aaaaaaatgg
     3301 tttaatgagt ggcaaaaaag agtagatttt gatggtatta ccttgctttt tgctcactct
     3361 ataggtgatg tagcggttca tgaaagctct tattttgcag gaattttaag caaacaaaga
     3421 aaattaggac ttaaacttct taatgaattt gttgaagatt ttaaagcaag tgcacccatt
     3481 tggaagtatg atgtaataaa caaagaaaga atttatgcca aagaaagatc aaccaaactt
     3541 tgcggtgcag gacttttaaa aggataaaaa atgttaatgt cttatgaaga aagtttaaaa
     3601 attttacatt ctcatatcaa aacctatgaa aagattgaaa aaatagctct tacagagtgt
     3661 ttaggacgca ttttagctca agacataaaa gcccctaaaa accaacctga atttccaact
     3721 tcggctatgg atggttatgc gatcaaattt gaagatcaag ataagccttt aaaaatttta
     3781 ggcctcacac ctgcgggcac tatgccacaa tttagcgtgc aaaatggtac ttgtgtaaaa
     3841 acctttacag gctcactcat gagcgaagga agcgatactt tagtccctgt tgaaaatata
     3901 cgcgtagaaa atgatactct ttttatagaa aaaaaagttc ctcaagcttt tgccgtgcgt
     3961 gcggtaggag aaaactataa aaaagatgaa attttactca aaaaaggcac aaggttaaat
     4021 tatagcgaga tagctctttt agctgaactt ggattttttc acattagtgt gtttataaag
     4081 cctattgtag gggttttaag tagtggaagt gagatcaaag atctaggaga agccttggaa
     4141 aatcctgctc aaatccgctc ttcaaatcat atcgccatag ctaatttagc taaaaattta
     4201 aattgcgata caagggtttt tcctctttta aaagatgatg agaaagccac tttttccacc
     4261 cttgaaagtg ctttgcaaag ttgtgatatt ttggttacaa cgggcggggt ttctatggga
     4321 gattttgact ttttaaaaaa agccatcaaa gaatacgaaa tcatcatcga taaagccgac
     4381 ataaaaccag gtagacatat caaaatagct aaggctaatg aaaaattcat catcgcctta
     4441 ccaggttttc cttactcggc tatggtaatg tttaatcttt acacaagaga gattttaaac
     4501 tcttggttac ttcaacctaa agactatatt tgcaaagcct ttttacaagg aagttacaag
     4561 aaaaaaacac cttatttgga atttgtcgct tgcaatatag agtttaaaaa tggacgcatt
     4621 ttagccaatc ttgaaggcaa aaaagaaggc tctagtgcga ttataaacaa tcttaacaat
     4681 aaagctgccc ttatggtggt gccaaaagaa tgtgaaatgt tagaaaatga aagtttagta
     4741 gatattatct ttatgcctta aaattattta aataatttta tttcgatttt aatcaac
//
LOCUS       DARGEY010000104         4699 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.104, whole genome shotgun sequence.
ACCESSION   DARGEY010000104 DARGEY010000000
VERSION     DARGEY010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4699
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.104"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..436
                     /locus_tag="SF008_001468"
     CDS             <1..436
                     /locus_tag="SF008_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEG8233716.1"
                     /translation="EKIIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVIPSKNLLLP
                     TIKSRLICEKRKVEKEVKKLDLDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKEC
                     VKYKDFNAEELEFFYESYELAKLNSKSGVLLATLLLNYYTKK"
     gene            438..1580
                     /gene="folP"
                     /locus_tag="SF008_001469"
     CDS             438..1580
                     /gene="folP"
                     /locus_tag="SF008_001469"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEG8233717.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRVGAELITHKEVITAKITHSNALLMASKEQIQKLVVKEKLQDFGLK
                     NLALFLQKDFLKQKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPEYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYGAKYCLMHMQNNPNNMQDNPFYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFALAQAMDNIGV"
     gene            1581..3524
                     /gene="ligA"
                     /locus_tag="SF008_001470"
     CDS             1581..3524
                     /gene="ligA"
                     /locus_tag="SF008_001470"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEG8233718.1"
                     /translation="MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFE
                     EQNKDEISKDSPTQKIAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGE
                     NTLNFTKHSEVMQFIRELGFLKDDFVRLCANLDEVLKAYDELLVLREKKPMMMDGMVV
                     RVDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWYKQSFEAYANLEGFGEQMALSLCEFTRVNRTRIDEFYKLLNLKIEK
                     LEIKSDGVIFGKTFVITGTLSRPRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSK
                     LSKAKELEVKCINESAFNELVKE"
     gene            3505..4509
                     /locus_tag="SF008_001471"
     CDS             3505..4509
                     /locus_tag="SF008_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233719.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRSAFSLFFLIPIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSLFYRISMGDFYLYIFSFFLAIFGLVSLFLNFLNLEKID
                     FVFIFIILPLLMIFLKKELHLQFIDNAYNDFRIVVIASFFTALFYAFYGLFFTYNELL
                     NLELFSRKIIAYKSASFVYFDFLSEFLHFVSNLKFFIFSYFGYLGFRALNFIFDFFNF
                     FMFCSLLAFVFNFVLKIKIKIIVLFLCFIMVLGNYFLKEQRNNALKSEQEQILLWMNN
                     FNFLKDNNLSLIQKEKDLFEKDLKDLREIFKKNAFEIGIWWFSKEKEDLEKRINESLK
                     "
     gene            4506..>4699
                     /locus_tag="SF008_001472"
     CDS             4506..>4699
                     /locus_tag="SF008_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEG8233720.1"
                     /translation="MRFDFFVSKRLNISRNKALELIENEEILLNGKSFKASFDVKNFL
                     ENLKKTQDLNPEDILLANEL"
BASE COUNT         1675 a          500 c          865 g         1659 t
ORIGIN      
        1 agaaaaaatt attgttttaa tggcggattc ttataggata gaagcacaaa attttttact
       61 taaactcctt gaagaacctc caaaaaatat taaatttctt attgtgatac cttctaaaaa
      121 tttactttta cctactataa aatcacgtct tatttgtgaa aaaagaaaag ttgaaaagga
      181 agttaaaaaa cttgatttag atcttaaaag aatggattta agaatgcttt ttgatttttt
      241 gcaaaaaaat gaaaatttgg ataaaaatga acttatggat caaatcgcat tgcttgctaa
      301 agaatgtgtg aaatataaag attttaacgc tgaagaatta gagttttttt atgaaagtta
      361 tgagcttgca aaattaaatt ctaaaagcgg ggtgctttta gctactcttt tattaaatta
      421 ctatacaaag aaataaaatg aaatttttta aaatcaatcc aaacaccgat tttaatttgc
      481 tttgttcttt cataaaccct cataaaatgg gacaaaagat catgagtgaa aaaacaaaaa
      541 ttcattttat ttttatcaaa gatatttcta ctcctgcggc aaatatttta aaacaagatg
      601 ctttaagagt aggagctgaa cttattactc ataaagaagt aattactgca aaaatcactc
      661 attcaaatgc gcttttaatg gcaagtaaag agcaaattca aaagcttgtt gtcaaagaaa
      721 aacttcaaga ttttggactt aaaaatttgg ctcttttttt gcaaaaagat tttttaaaac
      781 agaaaaaagc cgagcttatg gcagtgatta atgtcaatga agacagtttt aatgcaaaaa
      841 gtcgtgtgag tgaagaagac tttgaaaaaa ggcttaatga ctttcttgct ttaaagcctg
      901 aatatatcga tataggtgcg gtaagttcaa gacctgggag tgagtattgt ggcaaggaag
      961 aggaatttaa aagactgaaa aaagtacttg acttaattta tgagaaaaat tattacgaac
     1021 aagcaatttt tagtttagat agttttgatg aatattgtct agaatatgct ttaaataagg
     1081 gttttaaact cattaatgat attacaagtt taagaaatct taatctagcc aaacttgcaa
     1141 gtaaatatgg ggcaaaatat tgcttaatgc acatgcaaaa caatccaaat aacatgcaag
     1201 ataatccttt ttatgaagat ttgcttgatg agatgacttt gttttttaaa gaaaaacttg
     1261 agcttttaga aagttttgga gtaaaagaaa gtattttaga tgtaggtatt ggttttggaa
     1321 agagtgcggg gcataatatg attttaatca aacacttaga acattttttg caatttaata
     1381 aacctttact tataggtgcg agtcgtaaaa gtgtgattaa tgcgtatttt caaagcgaga
     1441 ttaaagatcg tttagcggga actttatatt tgcatttaaa ggcttttgaa aatggtgcta
     1501 gtattataag agtgcatgat ttatatgagc ataaacaact ttttgcttta gcgcaggcaa
     1561 tggataatat aggagtttag atgaaaaaag aagagtattt agaaaaagtt gctttagcta
     1621 atttgtggat gagggcatat tatgaaaaag atgaaccctt ggctagcgat gaagaatacg
     1681 atgctttaat cagagaatta agagtttttg aagaacaaaa taaagatgaa atttcaaaag
     1741 actctccaac gcaaaaaata gctcctacta tacaaagcga gtttaaaaaa atagctcatt
     1801 taaagcgtat gtggtcgatg gaagatgtgt ttgatgagag tgagcttaga gcttgggcaa
     1861 aacgcgcaaa atgtgaaaaa aactttttta tagagcctaa atttgatgga gcgagtttaa
     1921 atttgcttta tgaaaatggt aaattagtaa gcggcgccac taggggcgat ggcgaagtgg
     1981 gtgaggatat aacgcttaat gtttttgaga tagaaaatat acctaaaaat atagcctata
     2041 aagaaaggat agaaattcgt ggagaagtgg tgattttaaa agatgatttt gagaaaatca
     2101 acgaaaaaag agccctttta aatcaaagtt tatttgccaa tccacgcaat gctgcaagtg
     2161 ggagtttaag gcagcttgat acaagcatca ctaaagaaag aaatttgaaa ttttatcctt
     2221 ggggagtagg ggaaaatacc ttaaatttca ccaaacacag cgaggtgatg caatttatca
     2281 gagagcttgg ttttttaaag gatgattttg taagactttg cgctaattta gacgaagttt
     2341 taaaagctta tgatgagctt ttagttctaa gagaaaaaaa acctatgatg atggatggaa
     2401 tggtggtaag agttgatgat cttgcacttt gtgaagaatt aggctatacg gtaaaatttc
     2461 caaaatttat ggcagctttt aaatttcctg cgcttgaaaa aaccacgcgt ttaatagggg
     2521 taaatttaca agtaggaaga agtggagtga tcactcctgt ggcggtttta gaacctgtaa
     2581 atttagatgg ggttgtagta aaatcagcca cccttcataa ttttgatgaa attgcaagac
     2641 ttgatgttaa aatcaatgat tttgtaagcg tgataagaag tggcgatgtt atccctaaaa
     2701 tcactaaggt ttttaaagag cgtagagaag gtttagagat ggaaatttca cgccctaagc
     2761 tttgtcctac ttgccaaagt gagcttttgg atgaaggaac tttaataaaa tgtcaaaata
     2821 tagattgtga agatagactt gtaaattcta tcattcattt tgtttctaaa aaatgtctta
     2881 atatcgacgg actgggagaa aatatagtag aacttttata caagcacaaa aaaatcacta
     2941 cgcttgagag tatttttcat ttaaaattta atgattttga aggtttggaa ggctttaaag
     3001 aaaagaaaat taacaatctt ttaaatgcca tagaacaagc aagagaatgt gagctttttc
     3061 gttttatcac agctttagga atagagcata ttggcgaggt tgcggctaaa aaattaagtt
     3121 taagttttgg taaagagtgg tacaagcaaa gctttgaagc ttatgccaat ttagaaggtt
     3181 ttggagagca aatggcttta agtctttgcg aatttacgcg tgttaatcgc acaagaattg
     3241 atgagtttta caagctttta aatttgaaaa tagaaaaact tgaaatcaaa agcgatggtg
     3301 tgatttttgg taaaactttt gtgattacag gcactctttc acgcccaaga gatgagttta
     3361 aggctttgat agaaaagctt gggggtaagg taagcggctc tgtttctaaa aagactgact
     3421 atgtgctttt tggagaagag gcaggttcta aacttagcaa ggctaaagag cttgaagtaa
     3481 aatgtataaa tgaaagtgct tttaatgagc ttgttaaaga atagttctta tattttaacg
     3541 cttttaagcc tttttggctt tttgctaact tggcaaagga gtgctttttc tttatttttt
     3601 ttaattccta tttttttaac acttttttgg gaattctttt tatttttaaa gcttagaaaa
     3661 aatattataa aagaagctac tttgattaag ggaagtttgt tttatcgtat tagtatgggg
     3721 gatttttatc tttatatttt tagctttttt ttggcgattt ttggacttgt ttctttattt
     3781 ttaaattttt taaatcttga aaaaattgat tttgttttta tatttataat tttaccttta
     3841 ttgatgatat ttttaaaaaa agaattgcat ttgcaattta tagataatgc ttataatgat
     3901 tttagaatag ttgttatcgc tagttttttt actgctttat tttatgcatt ttatgggctt
     3961 ttttttactt acaatgaact tttaaattta gaactttttt ctaggaaaat cattgcctat
     4021 aagagtgctt cttttgttta ttttgatttt ttatctgaat ttttacattt tgtttcaaat
     4081 ttaaaatttt ttattttttc ttattttgga tatttggggt ttagggcttt aaattttatt
     4141 tttgattttt ttaatttttt tatgttttgt tctcttttgg cttttgtttt taattttgtt
     4201 ttgaaaataa agataaaaat aattgtttta tttttatgtt ttatcatggt tttaggaaat
     4261 tattttttaa aagagcaaag aaataatgcc ttaaaatccg aacaagagca aatactttta
     4321 tggatgaata attttaattt tttaaaagat aataacttaa gtttaattca aaaagaaaaa
     4381 gatctttttg aaaaagatct taaagatctt agagaaattt ttaaaaaaaa tgcttttgaa
     4441 ataggtattt ggtggttttc taaagaaaaa gaagacttag aaaaaagaat aaatgagagt
     4501 ttaaaatgag atttgatttt tttgtttcaa agcgtttaaa tatcagtaga aataaagcct
     4561 tagagcttat agaaaatgaa gagattttac ttaatggtaa gagttttaaa gcttcttttg
     4621 atgtaaaaaa ttttttagaa aatttaaaaa aaacgcaaga tttaaatcct gaagatatac
     4681 ttttagccaa tgagttaaa
//
LOCUS       DARGEY010000105         4685 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.105, whole genome shotgun sequence.
ACCESSION   DARGEY010000105 DARGEY010000000
VERSION     DARGEY010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4685
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.105"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..259)
                     /locus_tag="SF008_001473"
     CDS             complement(<1..259)
                     /locus_tag="SF008_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233721.1"
                     /translation="MKRNTCEIELEIPNSGIFTISLENENLIISLDLAKFEYKKKLNA
                     GGLAKPLHPYIIYEVLEKNNKNTFNDVKIIDKIEDENNIIYH"
     gene            complement(259..4024)
                     /locus_tag="SF008_001474"
                     /pseudo
     CDS             complement(259..4024)
                     /locus_tag="SF008_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
     gene            complement(4085..>4685)
                     /locus_tag="SF008_001475"
     CDS             complement(4085..>4685)
                     /locus_tag="SF008_001475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233722.1"
                     /translation="ILYRYNKNKSELKNLNEENYKKAKDIIQHKWSNICEYIIEEFFD
                     SFEHKEIKIGDITFIGNKIEENRVNHGVFIFYPIDYKNESIYPCLYIYFKKNYYDIIG
                     LTFEISNDDEEDIENEKYKECLKLFKDVKEENVRKYQNHYYCDKLINNEKLEGEYAFI
                     YWLIENQNSKKDFIQILNDFFIKKPIQEAYKGINDILNS"
BASE COUNT         1425 a          715 c          621 g         1924 t
ORIGIN      
        1 aatgatagat aatattattt tcatcttcta ttttatctat aatttttaca tcattaaaag
       61 tgtttttatt atttttttct aaaacttcat aaatgatata tgggtgcaat ggtttagcta
      121 atcctccagc atttaatttt ttcttatatt caaacttagc taaatctaaa gaaataatta
      181 aattttcatt ttctaaactt attgtaaaaa taccgctatt tggtatttct agttcgattt
      241 cacatgtatt tcttttcatt atttcccttc tatgattttt atttcttctt cgtttaggtt
      301 gtaaagttta taaaccaaag aattgatttt attttctaac tcttgggtgt ttgcgttttt
      361 gtcttgctct ttggctttta aaatttcatc gactaaattt ataagctcat cgactatgtt
      421 ttgattttta gaatttattt ttggtatagg gagtttttct atattgtatt tataatttct
      481 aaatgctcct gtattaccta atggtgtttg gatatcggca agataatatg taattggctt
      541 tgaatttagg attcccaata aataacgatt acttgtggaa aaaaaatagt ttgtatcttg
      601 caatagcata tcttttggaa taaatgaatg ttctatatat ccaacactag cccacactat
      661 cttttccctt tcaaattctt gataataatt tgctccccat ctttgcaaac aataccattc
      721 ataacgaatt cctgtttctt ctttatttct tttagataat ctttctttat gagataacaa
      781 gtgcttatat aagctcggat attgttcttt taaatcttgt tcattttcta gcattgtctt
      841 tggtttttca acatttggaa aatgccaagg tataaatatc acccaaagtc ccgcccactc
      901 gtaactatat ctttttatat cgcgtccgcg tagcattttg cgtatgagtt tggcggtgcg
      961 ttctttttcg gcttcatctt tgcaatttgc taaaatttca tttctttttt cagtggtgat
     1021 gataaaggct tcattatagc ctgttaaaat tccacgatat atattaagtc cttgccattc
     1081 tttaagcgga gttcctatgc gttctatctt agcctttaag gcactagtat tctcatcgct
     1141 aaaagtgaag ctttctttgc ttaaagaatt ttgcgaaaat tctgcaaagt ccttatataa
     1201 gccaatgtta taagcacaag tttttaaaat ttcattgctt agggcaaggt atttgaattt
     1261 attatctttg ctttttgatt tttcaaaaca aagtatggaa gtatccactg tagcactatc
     1321 aaaaactttt atgccgttta aatcagtgta ttctaaaaac ttaacatttt taagcaaaaa
     1381 ttcacgcaaa gcttccccat atcctgcacg cgtgtatttg ttagaagtga tatagctcaa
     1441 tacccccccc cctatctttt aaaacattaa atcctagttc ataaaaataa gtataaatat
     1501 cgctcgtgcc tttataaacc ttataatttt tagctaaatg ggacttgagt tctttaagct
     1561 cctcttgtct tatataaggt ggattgccga tgatgagatc aaagcctttg aaatttccat
     1621 catcgtccaa aatttcaggg aattcaaaac gccattcaaa aggatgattg ctttctaggt
     1681 tgaagatatt gtcgtattct tttttaagat ttgcaaattc ttttgtggct tctttttcat
     1741 caaagtcaaa aagagtcaaa ttcgcactaa caaagaattt caaattttca tcatctacgg
     1801 ctaagaaatt tccgtatttt ttagagtatt tttcacattt atcattaaag cttttcattt
     1861 cttttttaaa tttatctgca aagcagaaat ttttaaaaga aattttgaga ttttttatct
     1921 cttggttgat atggctttta tctgtgtaaa agccttcttt atagtctttt actatgcgtt
     1981 tgtatttgtt aatgcgttct ttgatgttag gatagtggtt taggcttttg cctgtttcaa
     2041 agtaagatac taaagaattt ccgcatttta tgtttatatc gatgtttggt aatgttttaa
     2101 gatcgtgata attctcatca tcaaagcttt gataaaaact atgttttaaa agctctatcc
     2161 aaagccttag cttggtgatc tcgcatgagt tagggttgat atcgactcca aaaaggttgt
     2221 tttctatgat gtctttttta gtgtgaaaaa gttcttgctg gataagatgg gctttatctt
     2281 taggcgtact tgggcgttta tactctataa actcgccttt tctacccgtg atgagaattt
     2341 catcgttttg cacttctaga taaaattctt catcaaaaag atttagctca tcataaatgc
     2401 ttaacataac atttaaagca gaaaccaaaa aatgcccgct tcccaccgca ggatcgcaaa
     2461 tttttatgga atttaaaagc tctttttgtg cttttttatc ttcttttctt aaagactttc
     2521 ttagttcgct tatatcttta gcattaagat caaattgagc gttgaattta tcaagcacaa
     2581 cttttgtgat actttcttta cacatataag aagtgataaa gcttggcgtg taaaagcttc
     2641 cttctttgta gccattgagt ttttcaaaca catttcctaa aacacttgaa cttatgagtt
     2701 ctttttggct taaaatttcg ctttgctcat catcgctacc aaaatcaaag ctatccaaaa
     2761 attcaaacaa gtattctaaa agccccactt gtcctttttt agctttacat ttatcatctt
     2821 ttagcacagt gtttttatag taaaaaagct ttaagtcatt gcttaagctt gaaatttcaa
     2881 gtgtgttttc tatgctttgt ttttcaaaca aagaagaatt tagataaggc agataggcaa
     2941 attcgctttt ctttctcgtg cttttttctt tggctaaaac ttcaaagaaa agttcgctaa
     3001 gcttgtcaaa atcagggatt tttttgaaat ttaaaaattt caaattttta tcatcattaa
     3061 aacgcaccaa atttgactct ataagcttta aaaacaaaat gcgattaagc cataagatca
     3121 aaagttttaa gatggtttca aaattttctt ctttaagctt agagtttata gcggtgtaga
     3181 aagtgccttg ctcttcttta ctttcttcac tttttgcgat gatgagtttt gagttttgtt
     3241 tgctctcaca aagccctaag atatataaaa gctctttgta aaaagcgttg ttgagtgaat
     3301 ttgcatcgtt ggggttaaac tcacttagca aaaagtctct atgaaaagtt ttataaatac
     3361 ttgctaggtt tttaaaattt gatttctgtt tatcttttaa aaacgtcaag tcaatcaaaa
     3421 agccttttaa gttttctttg gaattttcta tgagtttggc tacttcttta tagaattctt
     3481 cagtattgcc tttgaaaagt gaatttggat tacaaaattc ttcaaaaagt tttttaaaac
     3541 ttggattttt ataaaaaagc tcttcaaact cactaatttt aaaaatgtaa aatttataaa
     3601 aatctgtgat gataataaat tttaagctaa aactatactc tctatttcta aaataatata
     3661 aaatagtctc gtgtaaggct ttagaattta cctttgtatg agtgataaat tcttttgaat
     3721 ttggcttttt agcctcaata agaacttcta agtctttact aaactcatct ttagagatgg
     3781 ataagtcaat ctcacttttg cctttttgct tggttttgat gtgggttttg aaatttaaca
     3841 tggttaaaaa tggactaagt gcattagcta caagataatc ttcattttca ctttgcgaac
     3901 tttcaagtct ttctagatat tgcattaaag ccttgctaaa tatatcaaat tcattttgca
     3961 tgatttgctt tttgcggtag tatgggttga aaaaatcttt ttcatttagc aaagtgaaat
     4021 gcatttttaa cctttataaa aaatattttg tattttatca aattttactt ttatataaaa
     4081 ttttttaaga atttaatata tcattaatac ctttatatgc ttcctgtata ggttttttaa
     4141 taaaaaaatc atttaaaatt tgaataaaat cttttttaga attttgattt tcaattaacc
     4201 aataaataaa agcgtattct ccttctaatt tttcattgtt tattaattta tcacaataat
     4261 agtgattttg atattttcta acattttctt cttttacatc tttaaataat tttaaacatt
     4321 ctttatattt ttcattttct atatcttctt catcatcatt tgaaatttca aatgtcaaac
     4381 caataatatc atagtaattt tttttaaaat aaatatatag acatggatat atgctttcat
     4441 tcttataatc aataggataa aatataaaca caccatgatt aacacgattt tcttctattt
     4501 tattgccgat aaaagttata tcacctattt taatttcctt gtgttcaaaa ctatcaaaaa
     4561 attcttctat tatatattcg cagatgttgc tccatttatg ctggataata tctttagctt
     4621 tcttatagtt ttcttcattt aaatttttaa gctctgattt atttttgtta tatctatata
     4681 aaatc
//
LOCUS       DARGEY010000106         4583 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.106, whole genome shotgun sequence.
ACCESSION   DARGEY010000106 DARGEY010000000
VERSION     DARGEY010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4583
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.106"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..672
                     /locus_tag="SF008_001476"
     CDS             <1..672
                     /locus_tag="SF008_001476"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEG8233723.1"
                     /translation="GKKDNFRFIFQNNIPLSRGLGSSSAVIVGAIASAYYMSGFKVEK
                     ECILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLAAVVVIPNLAMS
                     TEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKLHEINRMKNLPE
                     LFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALAKKIQTKFKDFRVQYLEFDDN
                     GFEIC"
     gene            697..954
                     /locus_tag="SF008_001477"
     CDS             697..954
                     /locus_tag="SF008_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HEG8233724.1"
                     /translation="MKKHIPIRMCIACKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYL
                     CQNCIEREDKVLQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            941..3556
                     /gene="infB"
                     /locus_tag="SF008_001478"
     CDS             941..3556
                     /gene="infB"
                     /locus_tag="SF008_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEG8233725.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEEKLKQEVKK
                     EELKIEKENAKEEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVK
                     NSNDISINNEERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHDFGDI
                     SLDDEDEVVLPDFSVKEQEKPQNINKKQPNFIRQAVGNSAGFGFEGGIQRRSRKKPSK
                     KIEKKEVEEVGSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIE
                     ILAAEFGIEINIINEADEFDYVKDYEEETDEKDLVTRAPVITIMGHVDHGKTSLLDYI
                     RKSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVV
                     AADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGS
                     YEFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATII
                     VQNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIA
                     VKTDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSL
                     EALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERA
                     KDKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCI
                     VTEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVG
                     DYIESYKEVEEQASL"
     gene            3553..3915
                     /gene="rbfA"
                     /locus_tag="SF008_001479"
     CDS             3553..3915
                     /gene="rbfA"
                     /locus_tag="SF008_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEG8233726.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            3905..4327
                     /gene="rimP"
                     /locus_tag="SF008_001480"
     CDS             3905..4327
                     /gene="rimP"
                     /locus_tag="SF008_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEG8233727.1"
                     /translation="MNLEALCKEAELSFYDDELVSENGRKIYRIYVQKEGGVNLDDCA
                     RLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELVKITTNEKEKFE
                     AKIIAVDDENITLENLENKEKTTINFNDIKKARTFIQW"
     gene            4383..>4583
                     /locus_tag="SF008_001481"
     CDS             4383..>4583
                     /locus_tag="SF008_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HEG8233728.1"
                     /translation="MLENKCDWKISKADQNGNVYYYFPKDEDEFKEAVVKNGGMSVYV
                     YQEGKFIDEFHTKSQGDKWTSSI"
BASE COUNT         1791 a          545 c          962 g         1285 t
ORIGIN      
        1 ggaaaaaaag ataattttcg ttttattttt caaaataaca ttcctctttc aagaggatta
       61 ggaagctctt cagctgtgat tgttggagct attgccagtg cttattatat gagtggattt
      121 aaggtagaaa aagaatgtat tttagatgaa gctttaattt atgaaaacca tccagataat
      181 atcgctccag ctactcttgg tggttttgtg tgttctttgg ttgaaaaaaa taaagtttat
      241 agtatcaaaa aagagattga taaagattta gctgctgtgg ttgtgatccc aaatttggca
      301 atgagcacgg aacaatcacg ccaagctttg gccaaaaatt taagttttaa tgatgcggtt
      361 ttcaaccttt ctcatgcttc atttttaacc gcttgttttt tggagaaaaa atatgaattt
      421 ttaaaatttg caagtcaaga taagctccat gaaatcaatc gtatgaaaaa cttacccgag
      481 ctttttgaag tgcaaaaatt tgccttagaa aataaagctt taatgagcac actttcaggt
      541 tcgggatcga gctttttttc tttagctttt aaagatgacg ctttagcttt ggcaaagaaa
      601 atacaaacaa aatttaaaga ttttcgtgtg caatatttag aatttgatga taatggcttt
      661 gaaatttgct aaaaaatata aaaaaaagat ataattttga aaaaacatat accaattaga
      721 atgtgcatag cgtgtaaaaa ccgctttgag caaaatatgt tatttagatt taaagttgtt
      781 ttaggagata ttgtgcctaa agcagaacat ggaagaagcg gatatttatg tcaaaattgt
      841 attgagagag aagataaagt cttacaaaaa gcattttcta aaatatgtaa aaatttaaat
      901 actaaaatta ctcagcaagg acttaaggag atatttttaa atggcaaaga ttagaattca
      961 tgaaatcgca aaagaattag gttatgatag taaggaaatt attgaaaagg caaatgaatt
     1021 aggacttgga attaaaacag catcaaatgc tgtagaacct gagattgcgg cagctattta
     1081 tgagtatata caaacaagag aaattccaga agcttttaag aaaaatatca aaactcctac
     1141 agcaaaaaag cctaaaaaag aaaatataaa agaacaagaa aagctaaatg aatctgaaaa
     1201 aaaagaacct aaaaaagaag aaaagcttaa acaagaagtt aaaaaagaag aattaaaaat
     1261 tgaaaaagaa aatgcaaaag aggaagaaaa acaagaaatt attgatgctc ataagccaca
     1321 aagccttgct agtgcaactt tagccaaaag acgcggactt gttattgtta aaaagaaaaa
     1381 agacgaagaa gaaattcaag ttaaaaaaga agaagtaaaa aattcaaatg atatatctat
     1441 caataatgaa gagcgcttaa gtttaaaaac tatgttttca aatgctgatg agagtttaaa
     1501 gaaaaagaaa aaagaaaaaa aatcttttgt tgcgagtaaa aaagaaagta ccgaaaaaat
     1561 gaatttttta gatgaacatg attttggtga tatttcttta gatgatgaag atgaggtagt
     1621 attacctgat tttagtgtaa aagaacaaga aaaaccacaa aatatcaata aaaaacaacc
     1681 taattttata agacaagctg ttggaaattc tgcgggtttt gggtttgaag gtggaattca
     1741 aagaagaagt cgtaaaaaac catctaaaaa gattgaaaaa aaggaagtag aagaagtagg
     1801 tagcgttgct atttctaaag aaattcgtgt gtatgaattc gctgataaga taggaaaaag
     1861 cactagtgaa gtgatttcaa aacttttcat gcttggaatg atgacaacaa aaaatgattt
     1921 cttagatgaa gatgcgattg aaattttggc tgctgaattt ggtatagaga tcaatatcat
     1981 taacgaggct gatgagtttg attatgtaaa agactatgaa gaagagactg atgaaaaaga
     2041 tttagtgact agagcacctg tgattaccat catggggcat gttgatcatg gtaaaacttc
     2101 tttgttagat tatattagaa aatcacgcgt tgcaagtggt gaagcagggg gtattactca
     2161 gcacgtgggt gcttatatgg tagaaaaaaa tgggcgtaaa attactttta tcgatactcc
     2221 aggtcacgaa gcttttactg ctatgcgtgc aaggggtgca agtatcactg atattgtaat
     2281 catcgttgta gccgcagatg atggggtaaa accacaaacc aaagaagcga taaatcatgc
     2341 taaagcagca ggtgtgccta ttattattgc tattaataaa atggataaag aagcagcaaa
     2401 tcccgatatg gtaaaaactc aactcgcaga aatggaaatc atgccagtag aatggggcgg
     2461 atcttatgaa tttgtaggag tttcggctaa aacaggaatg gggattgaag atttgcttga
     2521 aatcgtgctt ttacaagctg atattttaga acttaaagcc aatccaaaaa gttttgctaa
     2581 agcaagcatt atagaaagtt ctgtgcaaaa agggcgtggt gcggtggcta ctatcatcgt
     2641 gcaaaatgga acacttactg taggaagtac cgtggttgca ggcgaggctt atggaaaagt
     2701 gcgtgcgatg agcgatgatc aaggtaaagc cttaaaagaa attaaaccag gcgaatgtgg
     2761 ggttatcgta gggcttagtg aagtagcaga tgcaggtgaa attttaatcg cagtaaaaac
     2821 cgataaagaa gcaagagaat atgctaataa acgccacgaa tacaaccgcc aaaaagaact
     2881 tagcaaatcc actaaagtta gcattgatga gcttggagct aagatcaaag aaggcaatct
     2941 aaaagccttg cctgttattt taaaagctga tgtgcaagga tctttagaag ccttaaaagc
     3001 aagtttagaa aaacttagaa atgatgagat taaagtgaat atcattcata gcggggtagg
     3061 agggatcaca caaagtgata tagagcttgc aagtgcgagt gaaaactcta tagtactagg
     3121 ttttaacata cgcccaacag gggaagttaa agagcgtgct aaggataaag gcgtagaaat
     3181 taaaacctat aatgtgattt ataatctttt agatgatgta aaagccttgc ttggtggtat
     3241 gatgagtccg attatttctg aagagcaatt aggacaagca gagattagac aagtgatcaa
     3301 tgtgccaaaa atcggacaaa tcgcaggttg tatagtaact gaaggggtga ttaaccgtgg
     3361 agctaaaatt cgccttatcc gtgatggagt tgtggtttat gaaggaaatg taagctcgct
     3421 taaacgtttt aaagatgatg ctaaagaagt ggcaaaaggc tatgagtgtg gcgtaggtat
     3481 agaagggtgt gatgatatga gagtgggtga ttatatagaa agctataaag aagtagagga
     3541 acaagcaagt ctatgaaccc aagtgagatt aaaaaactac gcactgaaag tatcttaaaa
     3601 gagctaatcc ctgaagcttt agcaaattta gatgatgaaa atttgaaaaa tttgtgtgta
     3661 gtggatgtag agtgtaaaaa aggcagatat gatgcttttg tgtatcttga taagatgttt
     3721 tttaatgttc atgagcaaga aaaaatttta tcttctttaa aaaaggcaag tagagctttg
     3781 caaaattact gcatgagtga gcagggttgg tataggtgtc cgaattttca ttttaaattt
     3841 gatgataggc ttgagtatca aaaccatatg gatgcacttt ttgaaaaaat aaaaaaggat
     3901 aaaaatgaat cttgaagccc tttgcaaaga agcagagctt agcttttatg atgatgagct
     3961 agtaagtgaa aatggcagaa aaatttatag aatttatgtg caaaaagaag gcggggtaaa
     4021 tcttgatgat tgtgcaaggc ttagtgaaat tttatcgcct atttttgatg tagagccacc
     4081 tgtaaatggg gagtattttt tagaagtatc ttcaccagga cttgaaagaa aacttagcaa
     4141 gatagaacac tttgctaaaa gtataggtga acttgtgaag atcacaacca atgaaaaaga
     4201 aaaattcgaa gcaaaaatca ttgctgtaga tgatgaaaat atcactttag aaaatttaga
     4261 aaataaagaa aaaactacta taaattttaa tgatataaaa aaagctagaa ccttcataca
     4321 atggtaaaaa tttagatttt tttatataat taaaataaaa acaaaaaatc aaaaggcatg
     4381 caatgttaga aaataaatgt gattggaaaa taagtaaggc agatcaaaat ggtaatgtgt
     4441 attattattt tccaaaagat gaagatgaat ttaaagaagc agttgtaaaa aatggcggta
     4501 tgagtgtgta tgtttatcaa gaaggtaaat ttatagatga atttcacaca aaaagtcaag
     4561 gtgataaatg gacttcttct att
//
LOCUS       DARGEY010000107         4554 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.107, whole genome shotgun sequence.
ACCESSION   DARGEY010000107 DARGEY010000000
VERSION     DARGEY010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4554)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4554)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4554
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.107"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            3..1235
                     /locus_tag="SF008_001482"
     CDS             3..1235
                     /locus_tag="SF008_001482"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEG8233729.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKEKIILKLAQILRENFKIILEA
                     NKKDMANFTKSGAMKDRLLLDEKRILALCEGLEKIAYIEDPIGKISKGWKNYAGLNIQ
                     KISIPLGLICVIYEARPSLSAEIAALMIKSSNACVFKGGSEAKFTNEAIFTLVNKVLK
                     EFDLQDCFAMFTQRDEILQILAFDDLIDVIIPRGSSNMIQEIANNTKIPLIKQNKGLC
                     HAFVDQSANLDMALKIILNAKCQRVSVCNALETLLIHEKIAKNFISLLIPEFEKFKVK
                     IHAHENALAYFNNSNLEIFKANENTFDTEWLDFALSVKLVKDCDEAIEHINKHSSLHS
                     ETIISNDASNIAKFQRLINSSCIYANASTRFSDGGEFGFGGEVGISTSKLHARGPMGI
                     EDICTYKYIINGEGQIRE"
     gene            1232..2317
                     /locus_tag="SF008_001483"
     CDS             1232..2317
                     /locus_tag="SF008_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HEG8233730.1"
                     /translation="MNKIEILKQHFKEIAKLNSSEQVWQMPFFAALGVGIVLGLSVFF
                     GKLNYGLIAMIGALSFLYVPNTPLYHRMAVVMCCSFGIVSSFFLGILTHFLPAIFAFI
                     PIGIMAMGSSILIRYYNIGAPGYFFFVFSCVLGAYSPFEAKDFIFLVGLVFLGAMVAN
                     LMALLYSIVVIYGFKNALPSEIPPREYIGFDAVFVDSLIMGSFVAFSIFIGTFLELER
                     SYWIAISCTAIMQGVTLNSIWIKQIQRIIGTALGVCFAWWLLSKQFHDIELILLMMSL
                     FFIGQFLVNRNYALAMIFFTPYATYLSEAANFMSENADKLILARLIDVVIGSILGLLG
                     GFVIYKPYLRVHFERIAKYIFRIKQKA"
     gene            complement(2314..3111)
                     /locus_tag="SF008_001484"
     CDS             complement(2314..3111)
                     /locus_tag="SF008_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG8233731.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYDFNK
                     GVLVQPSFLGIDNEFLLQSIEKDENIKAIVVVDENIKFDELKKLKERKACGVRLNLIG
                     KELPNFKSMVWTQFFENLSKLKMQIEIQRDLDNNLVDIVENLIPYGCNIVIDHLARAN
                     ANLTNLEDLICLKNSRIFFKISGFYRAKIDYANNEQAVKFAKKIYEILKEHFPLSNFV
                     FGSDWPHTNFESNVNFSSALVAFNEVVVSKKEQEQILGDNACALFGF"
     gene            complement(3122..4414)
                     /locus_tag="SF008_001485"
     CDS             complement(3122..4414)
                     /locus_tag="SF008_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HEG8233732.1"
                     /translation="MIMVFLIISSIIVAIILGYITRHNVGIFAMIFAYIIGAFFMDLA
                     PKKIIAFWPISIFFVIFAVSLFYNFATVNGTLEKLAGHLMYRFANHPYLLPFVVFVVS
                     AIIAALGAGFYTVLAFMAPLTFLLCDKIGLSKIAGAMAINYGALGGANFMTSQSGIIF
                     RGLMENSGIEANEAFVNSSIIFAFTIILPIVVLSFFVFNAFKNNIKISVISKPDSFDY
                     KQKTTLILMFMMIVVVLIFPVLNIIFPHNETISYFNKKIDIAMIAMIFVAIALFLKLA
                     DEKQVVALIPWGTLIMICGVGMLISIAVETGAIKLFSDLVENEINVIFIPLIMCAIAA
                     FMSLFSSTLGVVTPALFPIVPSIAASSGLSEALLFSCIVVGAQASAISPFSSGGSLIL
                     GSCPDKYKEKLFKDLLIKAVPIGFIAAILATIIMSFIL"
BASE COUNT         1669 a          711 c          642 g         1532 t
ORIGIN      
        1 aaatgcgaaa tttgcttgaa aatattaaga aaaattctca aaaactactt aacttaacgc
       61 ccaaagataa agaaaaaatt attctaaaat tagctcaaat tttaagagaa aatttcaaaa
      121 ttatcctaga agcaaataaa aaagatatgg caaatttcac aaaaagcgga gcaatgaaag
      181 ataggctttt gttagatgaa aaacgtattt tagctctttg cgaaggccta gaaaaaatcg
      241 cttacatcga agatcctata ggcaaaattt ctaaaggctg gaaaaattat gcgggtttaa
      301 acatacaaaa aataagcatt cctttaggac tcatttgtgt tatttacgaa gcaaggccta
      361 gtcttagcgc tgaaatcgca gctttaatga taaaaagttc caatgcttgt gtatttaaag
      421 gcggaagtga agcaaaattt acaaatgagg ctatatttac tcttgttaat aaagtactta
      481 aggaatttga tttgcaagat tgttttgcta tgtttaccca aagagatgaa atcttgcaaa
      541 ttctagcctt tgatgattta atcgatgtga tcatacctcg cggaagttca aatatgatac
      601 aagaaattgc aaacaatacc aaaattcctc tcattaagca aaataaaggc ttgtgtcatg
      661 cttttgtaga tcaaagtgct aacttagata tggctttaaa aataatcctt aatgcaaagt
      721 gtcaaagagt aagtgtttgt aacgctttag aaacgctttt aatccatgaa aaaattgcta
      781 aaaattttat aagtctttta atacctgaat ttgaaaaatt taaggtaaaa attcacgccc
      841 atgaaaatgc tttggcttat tttaacaact caaatttaga aatttttaaa gcaaatgaaa
      901 atacctttga tacagaatgg cttgattttg ctttaagtgt aaaattagta aaagattgcg
      961 atgaagctat agagcatatc aataaacaca gctccttgca ttctgaaacc attatctcaa
     1021 atgatgcttc aaatatcgct aaatttcaac gccttataaa ctcatcttgt atttatgcta
     1081 atgcttcaac gcgttttagc gatggaggag aatttggctt tggtggagaa gttggaattt
     1141 caaccagcaa attgcatgca agaggtccta tggggattga agatatttgc acttataaat
     1201 atataatcaa tggggaagga caaattcgag agtgaataaa atagaaatac taaagcaaca
     1261 ctttaaagaa attgctaaat taaattcaag cgaacaagtt tggcaaatgc ctttttttgc
     1321 ggctttaggc gtaggtatag ttttagggct tagtgtattt tttggaaaat taaactatgg
     1381 actcattgcc atgataggag ctttgtcttt tttatatgtt ccaaacactc ctttatatca
     1441 tagaatggct gttgtgatgt gctgttcttt tggcatagtt tctagttttt tcttaggaat
     1501 tttaactcat tttttgcctg caatttttgc cttcatcccc ataggaatta tggccatggg
     1561 aagttctatt ttaattagat actataacat tggtgcacct ggatattttt tctttgtatt
     1621 ttcttgtgtt ttaggagcct attctccttt tgaagctaag gattttatct ttttagtagg
     1681 tcttgttttt cttggagcaa tggtagctaa tttaatggct ttgttatatt ctatcgttgt
     1741 gatttatgga tttaaaaatg ctttacctag cgaaattcca cctagagaat acataggttt
     1801 tgatgcagtt tttgtggatt ctttgatcat gggttctttt gtggcttttt ctatatttat
     1861 aggaactttt ttagaacttg aaagaagtta ttggatagcc atttcttgca cagctattat
     1921 gcaaggtgta actttaaatt ctatatggat taaacaaatt cagcgcatca taggaacggc
     1981 cttaggagta tgttttgcat ggtggctttt atctaaacaa tttcacgata tagagcttat
     2041 tttacttatg atgtctttgt tttttatagg acaattttta gtcaatcgaa actatgcttt
     2101 agctatgatt ttctttactc cttatgctac ttatctttcg gaagcagcta attttatgag
     2161 tgaaaatgca gataaattaa tactcgctcg tttaattgat gttgtaatag gaagcatttt
     2221 agggctttta ggtggttttg taatttacaa accttatcta agagtacatt ttgaacgcat
     2281 tgcaaaatac atctttagga taaaacaaaa agcttaaaag ccaaataaag cacaagcatt
     2341 atcccctaaa atttgctctt gttctttttt agatacgaca acttcattaa aagctactag
     2401 agccgatgaa aaattaacat ttgattcaaa atttgtatgt ggccaatcgc ttccaaaaac
     2461 aaaattgcta agtggaaaat gttcttttaa aatttcatat attttctttg caaattttac
     2521 agcttgttca ttattagcat agtctatttt tgctctataa aaaccgctaa ttttaaaaaa
     2581 tattctagag ttttttaagc aaattaaatc ctctaaattt gttaagtttg cattagctct
     2641 tgctaaatga tcgataacaa tattacaacc ataaggaatt aaattttcaa caatatcaac
     2701 aagattatta tctaaatctc tttgaatttc tatttgcatt ttaagcttac ttaaattttc
     2761 aaaaaattga gtccaaacca tacttttaaa atttggtaat tctttgccaa ttaaatttaa
     2821 tctaactcca caagcttttc tttcttttag ttttttaagc tcatcaaatt taatattttc
     2881 atcaaccaca actatagctt ttatattttc atctttttct atactctgaa gcaaaaattc
     2941 attatcaata cctaaaaaac ttggctgaac taaaacccct ttattaaaat cataatgatc
     3001 taaatttgct ttataatctt taaaactagc gtcataatca ggcttatatc ttgcatttgc
     3061 aaccgtattt aactttttca aaaatatatg tgcgtgagta tcaatcttca ttaaattatc
     3121 cttataaaat aaaactcatt ataatagtag ctaaaatcgc cgctataaat cctataggca
     3181 cagctttaat aagtaaatct ttaaataatt tttccttata tttatcaggg caagatccta
     3241 aaattagact tcctccagaa gaaaaaggag aaatagcaga agcttgagcc cctacaacaa
     3301 tacaagaaaa aagcaatgcc tcgcttaatc cactacttgc agcaatgctt ggaactatag
     3361 gaaaaagcgc tggagtaacc acacccaaag tacttgaaaa aagcgacata aaagctgcaa
     3421 tagcacacat tattaacgga ataaaaatca cattgatctc attttctaca agatctgaaa
     3481 ataattttat agcccctgtt tcaaccgcta tgctaattaa catccctact ccacaaatca
     3541 ttatcaaggt tccccaagga attaaagcaa caacttgttt ctcatcggcc aattttaaaa
     3601 ataaagcaat ggcaacaaaa atcatggcta tcatagctat atctattttt ttattaaaat
     3661 aactaattgt ctcattatgt ggaaaaataa tatttagcac aggaaagatt aaaacaacaa
     3721 caatcatcat aaacataaga attaaagtag ttttttgttt ataatcaaat gaatcaggtt
     3781 ttgaaataac actgattttt atattatttt taaaagcatt aaacacaaaa aaagataata
     3841 ccacaatagg caaaattata gtaaaagcaa aaataatact agaatttaca aaagcttcat
     3901 ttgcttcaat gcctgaattt tccatcaatc ctcgaaaaat aatcccactt tgagaagtca
     3961 taaaatttgc tcctcccaaa gcaccatagt ttatagccat agctccagca attttgctta
     4021 aaccgatttt atcgcaaagt aaaaaagtaa gtggtgccat aaaagctaaa actgtataaa
     4081 aacctgctcc taaagcagct ataatagcac taaccacaaa aacaacaaaa ggaagcaaat
     4141 aaggatgatt agcaaaacga tacatcaaat gtccagctaa tttttcaaga gttccattta
     4201 cggttgcaaa attataaaac aatgaaacag caaaaataac aaaaaatata gaaataggcc
     4261 aaaaagctat gattttttta ggagctaaat ccataaaaaa agctcctata atataagcaa
     4321 aaatcatagc aaaaattcca acattatgtc tagtaatata gcccaaaata atagccacta
     4381 taatactaga gatgattaaa aaaaccatta tcatccttta aaatattata gggcttataa
     4441 tatcaaaaaa tatatttttc aaagcataaa aacaaaatct aaatttaaaa aatatctatt
     4501 tagtaacaaa tttactcatc ttatgaaatt ttttataaaa tatccacatc cata
//
LOCUS       DARGEY010000108         4539 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.108, whole genome shotgun sequence.
ACCESSION   DARGEY010000108 DARGEY010000000
VERSION     DARGEY010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4539)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4539)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4539
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.108"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            4..1131
                     /gene="ftsW"
                     /locus_tag="SF008_001486"
     CDS             4..1131
                     /gene="ftsW"
                     /locus_tag="SF008_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009293817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HEG8233733.1"
                     /translation="MLITIGIVFSYSLTAFTVLFLDYSEFHFFIRQLFFGISGILIMF
                     FISRLDPDKALSKKIILAILIISFIFIIILPFLPSALATASGGAKRWIRLGPLSISPV
                     EFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGYIYITQNDLGQSV
                     ISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIASWWGNIQDAFLP
                     MLPDWLANALRVSSNSEPYQISHSLNAIAHGGMFGEGLGLGTFKLGFLSEVHTDFVLS
                     GITEEIGLLGLGVICYIYLWMILRIFRIAGRCEAKQDFIFCSGIALLLLFSFFMNAFG
                     IISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            1128..2156
                     /gene="murG"
                     /locus_tag="SF008_001487"
     CDS             1128..2156
                     /gene="murG"
                     /locus_tag="SF008_001487"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HEG8233734.1"
                     /translation="MTIALTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDKAW
                     FENEVRFKEKFFLSSKGVVNQSKFDKISSLLHTLKLSKDCREIFKKYHIQAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKEISPYPVADKFFD
                     NARIRKELKNIIFLGGSQGAQFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADIFDFSLNLEEKMKNADLAISRAGASTLFELCANTLPTIFIPYPYAAKNHQY
                     FNAKFLQDQALCQIFMQNSINLDEFFKSILKLNLENISTRLQNITQKNGADMLIQKAL
                     FDNLTFIR"
     gene            complement(2127..3290)
                     /locus_tag="SF008_001488"
     CDS             complement(2127..3290)
                     /locus_tag="SF008_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HEG8233735.1"
                     /translation="MASFKKIFWINVIIVIIVAFNLRAPITAVGPIIDIIKDKYYLNS
                     TVAGILTSLPLIAFGSISFIVGYFSPIRAIVFGIFLIFLGEIIRSYFGVYGLFLGMLA
                     MGCGIAIANVLLPSFIKEKFPKKMASIMGIYSLVLSISSIMGIALAIPLLSVFDLAGA
                     MFFWAIFSFVALVVYYPQAKNGRFFRIKKKAHKKINLFINFTTWKITLFMGFQSFLAY
                     SLFFWYVQIVVEKGFDKEFSTSMVLFAQLVAAPVSLFGPLLLGKLRQNLHTFYIAGLC
                     SMYVIAFGMLFIFDSKISIIISAFIMGFPWGGVFGIALLFIAQKSSNAQIAARLSALS
                     QGFGYLIAAQGQWIIGFLHDKFENFSFAILMLVFVGILVNIFGYLSYKSQIIK"
     gene            complement(3298..4149)
                     /locus_tag="SF008_001489"
     CDS             complement(3298..4149)
                     /locus_tag="SF008_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8233736.1"
                     /translation="MKKYVLSLALLGSLLGASELKYQEFDGFKSPESIFVDKNYVYVS
                     NVGEKLEPLAKDNDGFISKLDKNGKVLEYKFLTHLNAPKGMMEIGKTLYVVDIDVLRG
                     FDLKTKKEIFNLPIKGAIFLNDIEKLDDNTLLVSDTGTGLILKVDLKTKQYDELLKLD
                     LAKFGGPNGLYLDRKKHKLFITGYHPDGVSGGVVMAYDLNTKELSIIKNEKESYDGIV
                     PYKDGLLVSSWGNNLNGYIYNLDNVKSVKLELPLMKGPADIFIEGNILWIPKMAEGKI
                     FKVELNK"
     gene            complement(4212..>4539)
                     /locus_tag="SF008_001490"
     CDS             complement(4212..>4539)
                     /locus_tag="SF008_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8233737.1"
                     /translation="LDLSQLFEYCGREFLSVNEMSNFAKLDLATFSKEFKKCFGQSPK
                     KWLDEKRLQKAKILLKFSKKNINEIANECAFSSVAWFIERFKEKYEQTPKQYQKTKNL
                     YFLSKN"
BASE COUNT         1622 a          738 c          616 g         1563 t
ORIGIN      
        1 tgtattttaa tcaccatagg aatagtattt tcatactctc ttacagcttt tactgttctt
       61 tttcttgact atagtgagtt tcattttttt attcgtcagc ttttttttgg aattagtggc
      121 atacttataa tgttttttat ttctcgattg gaccctgata aagcactttc taaaaaaatt
      181 attttagcta ttttgattat ttcttttatc tttatcatca ttttgccatt tttaccttct
      241 gcattagcaa cagctagcgg aggagctaaa cgctggatac gcttaggccc actctctatc
      301 tctcctgtgg aattttttaa aataggattg atttattttt tagcatggag ctatacaagg
      361 cgtattgatg atagcaaaaa agctatcaga cacgaggctt taattcttct gccttattgc
      421 atcttagctt ctatagttat aggatatatt tatatcactc aaaacgattt aggacaaagc
      481 gtaatttctt tctttttgat tctggcttta gctttttttg caggagctag taaaaggctt
      541 tttgcttttg gaactttaat tattatgatg ataggtataa tggtaatttt tagcaaccaa
      601 agaagaattc aaagaatcgc ttcttggtgg ggaaatatac aagatgcttt tttacctatg
      661 cttcctgatt ggctggcaaa tgctttaaga gtaagtagca acagcgagcc ttatcaaatt
      721 tcacactctt taaatgctat agcccatgga ggaatgtttg gcgaaggctt aggacttgga
      781 acttttaaat taggcttttt gagtgaagtg catactgact ttgttctttc aggaattact
      841 gaagaaatag gactcttagg tcttggggtt atttgctata tttatctttg gatgatttta
      901 agaattttta gaattgcagg aagatgtgaa gctaaacaag attttatttt ttgttcaggc
      961 atagccttac ttttactttt ttctttcttt atgaatgctt ttggtattat ttctcttact
     1021 ccactaaaag gcgtagcggt tccactttta agctatggag gaagttcaat gtgggcaatt
     1081 tgtataggca taggatatgt attaatgatt tcaaaaaagg ttaaattatg acaatagctt
     1141 taacaggtgg tggaactgga ggacatttgg ccatagtgcg ttgcttatta gaaagtgcga
     1201 ttaaaaaaaa tatagaatgt gtatacatag gcagtcaaaa tggtcaagat aaagcttggt
     1261 ttgaaaatga agtacgcttt aaggaaaaat tttttttaag ctctaaagga gtggttaatc
     1321 aaagcaaatt tgacaaaatc agttctttgc tccacacctt aaaactctcc aaagattgta
     1381 gagaaatttt taaaaaatac cacatccaag ccgtttttag tgtaggtgga tacagtgcag
     1441 ctcctgcatc ttttgcggct ttattctcac atttgcctct ttttatacat gaacaaaatt
     1501 caaaaagcgg ctctttaaat atgcttttaa aacctttcgc tacaaaattt tttagcgcct
     1561 ttgaaaaaga aattagccct tatcctgtag cagataaatt ttttgataat gctaggattc
     1621 gcaaagaatt aaaaaatatt attttcttag gaggatcaca aggagctcaa tttatcaacg
     1681 aactagcttt aaatttagca ccaaaacttc aagaacaaaa tatcaaaatc atccatcaat
     1741 gtggaaaaaa tgattttgaa aagtgcaaaa aacattatca aagcttaaat atccaagctg
     1801 atatttttga ttttagttta aatttggaag aaaaaatgaa aaatgcagat ctagctatat
     1861 caagagcagg tgcaagtact ctttttgaac tttgtgctaa tactttgccc actattttta
     1921 taccttatcc ttatgcagct aaaaatcatc aatactttaa tgctaaattt ttacaagatc
     1981 aagctttatg tcaaattttt atgcaaaact ctattaatct tgatgaattt tttaagtcaa
     2041 tattaaaact aaatctagaa aatatttcta caagattgca aaatataacc caaaaaaatg
     2101 gcgcagatat gctaatccaa aaagctttat ttgataattt gacttttata agataaatat
     2161 ccaaagatat ttactaaaat tccaacaaaa actaacatca aaatagcaaa tgaaaaattt
     2221 tcaaatttgt catgcaaaaa acctataatc cattgtcctt gtgctgcaat taaatatcca
     2281 aaaccctgag ataaagcaga aagtctcgct gctatttgag cattagagct tttttgtgca
     2341 ataaaaagca acgcaatgcc aaaaactcca ccccatggaa aacccatgat aaaagcactg
     2401 ataataatag aaattttact atcaaaaata aagagcatac caaaagcgat cacatacata
     2461 ctgcacaaac ctgctatgta aaaagtatgt aaattttgtc ttaattttcc taaaagtaaa
     2521 gggccaaaaa gagacactgg agctgcaaca agttgagcaa ataaaaccat acttgtagaa
     2581 aattctttat caaatccttt ttctacaaca atttgaacat accaaaaaaa caaagaataa
     2641 gctaaaaaac tttgaaatcc cataaaaaga gtaattttcc aagttgtgaa atttataaaa
     2701 agattgattt ttttatgagc ttttttctta atacgaaaaa atctaccatt tttagcttga
     2761 ggatagtaaa ctactaaagc tacaaaagaa aaaatagccc agaaaaacat agctccagct
     2821 aaatcaaata cactaagcaa aggtatagct aaagcaatac ccataatcga agaaatactc
     2881 aaaacaagac tataaattcc cattatactt gccatttttt ttggaaattt ttctttaata
     2941 aaactaggaa gtaaaacatt tgcaattgct ataccacagc ccattgctaa cattcctaaa
     3001 aataagccat atacaccaaa ataagaacga ataatttcgc ctaaaaaaat taaaaaaatt
     3061 ccaaaaacaa tagcacgaat aggagaaaaa taccccacaa taaaagaaat acttccaaaa
     3121 gctatcaaag gaagacttgt aagtatacct gctacggttg agtttaaata atacttatct
     3181 ttaataatat caataatagg ccccactgca gtaattgggg ctctaagatt aaaagctaca
     3241 ataataacaa taataacatt aatccaaaat atctttttaa aagaagccat aaaagcctta
     3301 tttgttaagt tctactttga atattttacc ttctgccatc ttaggaatcc ataaaatatt
     3361 accttcaata aatatatctg caggaccttt catcaaagga agttcaagtt ttacagattt
     3421 aacattatct aaattataaa tatatccatt tagattattt ccccaagaac ttaccaataa
     3481 accatcttta taaggaacta ttccatcata agattctttt tcatttttaa ttatactgag
     3541 ttcttttgta tttaaatcat aagccattac aacaccgcca cttacaccat caggatgata
     3601 accagttata aaaagcttat gtttttttct atctagatat aacccatttg gaccgccaaa
     3661 ttttgctaaa tcaagtttta ataattcatc atattgctta gtttttaaat caacctttaa
     3721 aataagccct gtgccagtat cgctaaccaa aagcgtattg tcgtctaatt tttctatgtc
     3781 atttaaaaag attgcacctt taataggtaa attaaaaatt tcttttttag ttttaagatc
     3841 aaaaccgcgt aaaacatcga tatctaccac ataaagagtt tttccaatct ccatcatgcc
     3901 ttttggtgca ttaagatggg ttaaaaattt atattctagc actttgccat ttttatcaag
     3961 cttagaaata aatccatcat tatctttcgc caaaggttca agtttttctc ctacattaga
     4021 tacataaaca tagtttttat ctacaaaaat actttcaggg cttttaaaac catcaaattc
     4081 ttgatatttt aattcacttg caccaagcaa acttccaaga agcgctaaac ttaaaacata
     4141 ttttttcata ttttctcctt tatttaaaaa tattttcatt gaattatatt tatttagata
     4201 aaaaaaatgt gctagttttt tgataaaaaa tacaagtttt ttgttttttg atattgctta
     4261 ggagtttgct catatttctc tttaaatctt tcaataaacc aagctaccga agaaaaagcg
     4321 cactcattag ctatttcatt gatatttttt ttagaaaatt taagtaaaat ctttgctttt
     4381 tgcaaccttt tttcatctaa ccatttttta ggactttgtc caaaacattt cttaaattct
     4441 ttagaaaaag ttgctaaatc taatttcgca aaattagaca tttcatttac gcttaaaaat
     4501 tctctaccac aatactcaaa aagttgggaa agatcaagg
//
LOCUS       DARGEY010000109         4526 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.109, whole genome shotgun sequence.
ACCESSION   DARGEY010000109 DARGEY010000000
VERSION     DARGEY010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4526)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4526)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4526
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.109"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..630
                     /locus_tag="SF008_001491"
     CDS             <1..630
                     /locus_tag="SF008_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233738.1"
                     /translation="SDYIQKPFMIEELIRKIKHYQDFRKLSILNKAYQSYIKSRLETI
                     KIPEYNYKKLKLPLILKSNKQSSADAFVFNYANECDITLSFIDLTSTNSVEKVMKLPT
                     ENNLLFLSNFQALKATEKEKLLDFIQNKNVILHTNSNTDDLKINCINLNDNEKNINSN
                     EILTIDEYVKYVIINYQNIFPDTDLSKKLGISRKSLWEKRKKYEISKKK"
     gene            608..1768
                     /locus_tag="SF008_001492"
     CDS             608..1768
                     /locus_tag="SF008_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HEG8233739.1"
                     /translation="MKSARKNKNITIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLILDEKVVGHIDFKSQFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIYNSQIEKIKENFQQIKNNLNAQKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVIFLVESFDVNGFEFELKEAYLKKFIQNYLPPDRIFIFP
                     LKNINIFHAHLNPGLESIIAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYG
                     IEVIVLPEFVFCDQCRMIVSTRSCPHGCHHHLHYNSQSLKDLLRAGIIPPAIFMRKEV
                     SSVILTSLFPNRLKNMQKIYNELFPTDGILEYKNDEEFYQKLLEIHQMSYMV"
     gene            1773..2273
                     /locus_tag="SF008_001493"
     CDS             1773..2273
                     /locus_tag="SF008_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HEG8233740.1"
                     /translation="MQKLFLTFFYSGSVKKASGTFGTIAALIPAFFILKYLGINTLFL
                     LSILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGIFLACAIAASVENSIVNFILAFV
                     LFRLFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDI
                     NLKDLF"
     gene            2352..2615
                     /gene="rpsT"
                     /locus_tag="SF008_001494"
     CDS             2352..2615
                     /gene="rpsT"
                     /locus_tag="SF008_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEG8233741.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            2634..3701
                     /gene="prfA"
                     /locus_tag="SF008_001495"
     CDS             2634..3701
                     /gene="prfA"
                     /locus_tag="SF008_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEG8233742.1"
                     /translation="MLASKLDPFLKRFEELNSLLSSSDIINDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGAGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(3715..4470)
                     /locus_tag="SF008_001496"
     CDS             complement(3715..4470)
                     /locus_tag="SF008_001496"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HEG8233743.1"
                     /translation="MNFESIISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGL
                     DLVYNDKENLRVEFPKKADENTIKDAIISLCMSAKSEQNFSGVEKELNEFMLSFNSVA
                     LATLNANGEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAAS
                     VILRKRLRYRVNASFLERGERFDQIYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKG
                     RFVKGFGQAYDIENGNVIHVGASGNPHKFLHKH"
BASE COUNT         1684 a          673 c          680 g         1489 t
ORIGIN      
        1 agtgattata ttcaaaaacc ctttatgata gaagagctga ttagaaaaat aaagcattat
       61 caggatttta gaaaactttc aattcttaat aaagcttatc aaagctatat caaatcaaga
      121 ttagaaacaa tcaaaattcc agagtataat tataaaaaat taaaacttcc attgatatta
      181 aaatccaaca agcaaagcag tgctgatgct tttgttttta attatgcaaa tgaatgtgac
      241 attactcttt cttttattga tttaacatct acaaattcag ttgaaaaagt tatgaaactt
      301 cccacagaaa acaatctctt atttttgagt aattttcaag cattaaaagc aacagaaaag
      361 gaaaaactcc tagattttat acaaaacaaa aatgttattt tgcataccaa ttcaaataca
      421 gatgatttaa aaataaactg cattaattta aatgataatg aaaaaaatat caatagcaat
      481 gaaattttaa ctatagatga gtatgtaaaa tatgttatta taaattacca aaatatattt
      541 cctgatactg atctttcaaa aaaattaggc atttcacgta aatctttatg ggaaaaaagg
      601 aagaaatatg aaatcagcaa gaaaaaataa aaacattacc atagatcaaa atgaatttgg
      661 catcttgtca cttattaaag aaggtttgct aggtacttgc actcatttaa tgaatgaaaa
      721 agaagtcaat gaaatcatta aatcaggaaa atttaaagga gaaagttttc cctatccctt
      781 aagctttgca ccaaaaaatg ctgaagaagc actaaatgat ataaaatctg gcgatagaat
      841 cgatctcata ctagatgaaa aagtagtagg acatatagat tttaaaagcc aatttaaaaa
      901 taataaaaat ttttctgata ttttcagtcc taacacttgc tctttagaag acatgggaac
      961 aacttgcata agtggaaaaa tagaaattta taattctcaa attgaaaaaa taaaagaaaa
     1021 ttttcaacaa atcaaaaaca atcttaatgc acaaaaaatt actgctatag tttcaagttt
     1081 tgatcctttg catcgtgccc atgaaagaat gtttcgttgg actattgata aagcagattt
     1141 agttgtaatt tttcttgtag aatcttttga tgtaaatggg tttgaattcg aacttaaaga
     1201 agcatatttg aaaaaattta ttcaaaacta tcttccaccg gatagaattt tcatttttcc
     1261 attaaaaaat attaatattt ttcacgctca tttaaatcct ggcttagaaa gtattatcgc
     1321 aaaaagtcta ggttgtacca aactagtagt aggacaaaat catacaggac ttggaatgtt
     1381 ttatgacgat aaccaaccaa aaaccatact tgatgatttt tccaaggact atggcataga
     1441 agtgatcgtt ttgcctgaat ttgtattttg cgatcaatgt cgcatgattg ttagcacaag
     1501 atcttgccct catggttgtc atcaccattt gcactataat tctcagtctt taaaagattt
     1561 actaagagcg ggtatcattc ctccagcaat tttcatgcgc aaggaagtat ctagtgttat
     1621 tttaacttct ctttttccaa atagattaaa aaatatgcaa aaaatttata atgagctttt
     1681 tccaactgat ggaattttag aatacaaaaa tgatgaagaa ttttatcaaa aacttttaga
     1741 aattcatcaa atgtcttata tggtgtaata aaatgcaaaa attattttta actttttttt
     1801 attcaggttc tgtaaaaaag gcaagtggga cttttggtac tatcgctgct ttaatacctg
     1861 ctttttttat acttaaatat ctcgggatta atactttgtt tttactaagc attttaattt
     1921 ttgttgcaag tattcgtgtt atagatgatt atgaaaaaaa aacaggaatt cacgatgaca
     1981 aacacatagt tatcgatgag gttgctggaa tttttcttgc ttgtgctatt gcagcaagtg
     2041 ttgaaaactc gatagtcaat tttattttgg cttttgtttt attcagactc tttgacatta
     2101 caaaaccttc tattattggt aagatagata aaaaagtcaa aggcggacta ggtgtaatgc
     2161 ttgatgatat gttagcagga ttgtttgctg gacttttaag tgcggtaatt tatggatttt
     2221 tacttaaatt taatttagtt ttttgggata taaatttaaa agacttattt tgaaattttg
     2281 cttaaattaa ttaaatttta aattttattc ttatataatt tagtctttaa tttcaaaaaa
     2341 ggaaaatata aatggcaaac cataaatctg ctgaaaaaag agcaagacaa actattaaaa
     2401 aaacagaaag aaatagattc tatagaacaa gacttaaaaa tataactaaa gccgtaagag
     2461 aagctgcagc aaatggagat aaaaatgctg ctaatgaagc tttaaaagta gctaataaaa
     2521 gcattcatgc tatggtaagt cgcggtttca ttaaaaaaca aactgcttct cgccgtgtaa
     2581 gccgcttagc ccttttagta aataaaatcg cataattttc tatatagttt ttaatgttag
     2641 ctagcaaact agatcctttt ttaaaacgct ttgaagagtt aaattctctt cttagcagtt
     2701 ctgatataat caacgatatc agtaaaatga ctacactctc taaagaacaa aaaaatttag
     2761 aacctatcgt tttaaaagct aaagagtatt taaaaacttt agacaatata gaagaaaata
     2821 aagctttgct aaacgatcca gaacttgggg aacttgcgaa agaagaacta aaaactttag
     2881 aagaattaaa accaaagctt gaagaagaga ttaaaatttt acttcttcct aaggatccca
     2941 atgatgaaag aaatattttt cttgaaattc gcgcaggcgc aggtggcgat gaggcatctt
     3001 tatttgtagg agatcttgta aaagcttatg caagatatgc tgaaaatcgt ggctataaac
     3061 ttgagattgt aagttctagt gaaggaagtg taggtggatt taaagaaatc atcatgcttg
     3121 ttaaaggaac aggagcttat tcaagactta aatatgaagg tggaacgcac cgtgttcaaa
     3181 gagttcctca aacagaatcc caaggacgcg tgcatacttc tgctatcacc gtggcagtaa
     3241 tgccagaagt tgatgatata gaaatcgaaa tcaatccaaa cgatcttaaa gttgatgtta
     3301 tgcgatcttc aggacatggt ggacaaagtg taaatactac tgattcagct gttcgtatca
     3361 ctcatatccc tacaggtata gttgtagtca atcaagatgg aaaaagccaa cacaaaaata
     3421 aagaaagtgc gatgaaagtc ctaaaagcaa ggctttatga aatgcaagag agtgaaagac
     3481 tggcaaaaga aagtgaagca agaaaatcac aagtaggaag cggagataga agtgaacgca
     3541 ttcgcactta caattttcca caaaatcgta tcagcgatca tagaataaat cttactttat
     3601 atcgcttaga tgccattatg caagatgggc tttttgatga aatcatagaa cctttaatca
     3661 ctcatcatca agcccaagct ttacaagaac aaaatttata agattttata taaattaatg
     3721 cttatgtagg aatttatgtg gatttccact agcacctaca tgtataacat ttccattttc
     3781 tatatcataa gcttggccaa aaccttttac aaagcgtcct tttttaaatt caagctttac
     3841 tagatgaaaa tcaagcatct tgcgtatagt tttaatgcct ccttctcctc cggtttgttt
     3901 ttcaaactca tcataaattt gatcaaatct ttcacctctc tctaaaaagc ttgcatttac
     3961 tctatagcgc aatcttttgc gaagtatcac agaagcggct ttactctcat cctctaaaaa
     4021 cattatttct atattgtttg gatttacttt gatgttgtta aaatgttcgc ttacttcact
     4081 tatataaata taatttcccc attgtgtgct tacaaaaggt gcatacgagc aaacaacttc
     4141 tccatttgca tttaaagttg ccaaagctac agaattaaaa cttagcataa attcatttaa
     4201 ttctttttct acgccactaa aattttgctc gctctttgca ctcatgcaaa gggatattat
     4261 agcatcttta atcgtgtttt catcggcttt tttaggaaat tccactcgta aattttcttt
     4321 atcattgtaa acaagatcta agccattaaa atcaacactt tttagaaaaa catcttgtac
     4381 ttgctcaata ccaccaaatt ttttacaaag atcgactaaa tttgatttat gatgatcatt
     4441 catatgagaa ataatgcttt caaaattcat ttttatcctt tcttgatttt aaaataaaat
     4501 attaaaaaaa atggtatcaa ttatca
//
LOCUS       DARGEY010000110         4505 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.110, whole genome shotgun sequence.
ACCESSION   DARGEY010000110 DARGEY010000000
VERSION     DARGEY010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4505
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.110"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..585)
                     /locus_tag="SF008_001497"
     CDS             complement(<1..585)
                     /locus_tag="SF008_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG8233744.1"
                     /translation="MQIIKQACGAYETNCYILFGEHGEIIIDPGFDALNFIKKHVKNP
                     LAILNTHGHYDHVWDNEKVKQAYQIPIYIHKNDTFMLEDPFNQGFMPSKADYLIDDEN
                     IISIGGLDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHLPSWL"
     gene            659..1399
                     /locus_tag="SF008_001498"
     CDS             659..1399
                     /locus_tag="SF008_001498"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HEG8233745.1"
                     /translation="MDWQKITEKMCDFIQEKVKNFQSQGVVLGLSGGIDSALVATLCK
                     RTLKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYALAKYLNLHENFIKKAPSADLWENQSDEADLGFSYAKIDEGLKALETNDEKLLKT
                     LDSSLIAMLKNRMQKNAFKGKMPEILEI"
     gene            1403..2329
                     /locus_tag="SF008_001499"
     CDS             1403..2329
                     /locus_tag="SF008_001499"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HEG8233746.1"
                     /translation="MSEEKNYELWLDNYFFKPNFWQKCLAFILLPLSVLYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLAQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLESKIKPYFNFNLPSGAYRLPKFYEKRADFIALEGRDFVRYSFVKENPKAV
                     LVTAIAKSFRLYEHFIKARACYFFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVK
                     DFGFKCQIIELNIELKDSLREKIKTYIKEFEQ"
     gene            2326..3738
                     /locus_tag="SF008_001500"
     CDS             2326..3738
                     /locus_tag="SF008_001500"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEG8233747.1"
                     /translation="MKLVESRNVNNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEEFFKKALKSYESFDDKNTPISLQKIAEKTYINELWHGP
                     TRAFKDMALQPFGVLLSEFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNEIKALNYELCAAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNANNILSEFFNHGVYDLREKSLKKTISPAMDILISSNIERLLFAKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILALFDLKNS
                     DEKVFEAKSIKKEILDWMQK"
     gene            3735..4454
                     /gene="kdsB"
                     /locus_tag="SF008_001501"
     CDS             3735..4454
                     /gene="kdsB"
                     /locus_tag="SF008_001501"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HEG8233748.1"
                     /translation="MIIIPARLKSSRFHEKILCDVGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKNHESGTDRINEACKKLSLKDDEIIINVQADEPFIECE
                     NLLKFKEFASSCLDKKAFMVSCYKKITQEEAMDPNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLSSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYERALKIYLEK"
BASE COUNT         1613 a          549 c          815 g         1528 t
ORIGIN      
        1 aagccaagag ggtagatgga cttgctcttc ttttaaagta gtttcttgtc catgtcctgg
       61 caaaagttta aaatcttctt tgtaagtcat aactttttct aagctttgtt tcattaaatt
      121 tgcatctgaa taaggaaaat cccatcttcc tatgcttcta taaaataaaa aatctccact
      181 aaacatgata tttttaccta caatttctat catagtgcaa cctggtgtat gtcctggtaa
      241 aaagtgaaat ttaaagtcaa gtccgcctat agaaatgata ttttcatcat caatcaaata
      301 atccgctttg ctaggcataa aaccttgatt aaaaggatct tcaagcataa aagtatcatt
      361 tttatgaata taaatgggga tttgataggc ttgttttact ttttcattat cccaaacatg
      421 atcgtaatgt ccgtgagtgt ttaaaatcgc taaaggattt tttacatgtt ttttgataaa
      481 atttagcgca tcaaaaccag gatcaattat aatttctcca tgctcaccaa ataaaatata
      541 acaatttgtc tcataagctc cacaagcttg tttgataatt tgcatttttt acctctttaa
      601 taaaaaattt gccttaaata aatataatta tacattaaat ttttaaaagg caagctttat
      661 ggattggcaa aagattacgg aaaaaatgtg tgattttata caagaaaaag tgaaaaattt
      721 tcaaagtcaa ggtgtggttt tggggcttag tggtgggatt gattctgctt tagtagcaac
      781 gctttgcaaa agaactttaa aagagaatgt ttttgctctt ttaatgccaa ctcaaatttc
      841 aaataaagcc aatcttgaag atgctttaag gctttgtgcg gatttaaatc ttgaatataa
      901 aatcatagaa attcaaagca ttttagatgc ttttataaag caaagtgaaa atactactct
      961 agtatctttg ggaaattttg cagcgcgtat tagaatgagt ttgctttatg attattctgc
     1021 cttgaaaaat tctttagtca taggcacttc taataaaagc gaattacttt tgggttatgg
     1081 tacgatttat ggagatttag cttgtgcttt taatcctata ggatcgcttt ataaaagtga
     1141 aatttatgcc ttagcaaaat accttaactt gcatgaaaat tttatcaaaa aagctccaag
     1201 tgcggatctt tgggaaaatc aaagcgatga agcggatttg ggtttttctt atgcaaaaat
     1261 cgatgaaggt ttaaaagcct tagaaactaa tgatgaaaag cttttaaaaa cactggattc
     1321 ttctttgatt gccatgctaa aaaatcgcat gcaaaaaaat gcttttaagg gaaaaatgcc
     1381 tgaaattttg gaaatttaaa caatgagtga agaaaaaaat tatgaacttt ggcttgataa
     1441 ttattttttt aagcccaatt tttggcaaaa atgccttgct tttatacttt tacctttaag
     1501 tgtgctttat gctttttttg cgattttaaa tacttttttt cgtaaaaaaa tagtttttaa
     1561 aaaacctgtt attagcgttg gtaatttaag ttttggaggt aatggaaaaa ccccgctttg
     1621 caaagctata gcaagggaat ttgatggcgt ttttatagtg cttaggggct ataaaagaaa
     1681 atctaaaggt ttgtttgttg ttaaaaatca aaatgaaatt ttatgcacct tagcacaaag
     1741 tggcgatgaa gctatggagt atgcttttga agaaaatatc aaaggtgtga ttgtgagcga
     1801 agatagagta aaaggtattg aaaaagcttt tgagttggga gctaaaatcg ttgtacttga
     1861 tgatgctttt tctaaatttc atattaaaaa atttgatatt ttacttgaaa gtaaaatcaa
     1921 accttatttt aattttaatt tgccaagtgg ggcttatcgt ttgccaaaat tttatgaaaa
     1981 aagggctgat tttattgcat tagaaggcag ggattttgtg cgttattctt ttgtaaaaga
     2041 aaatccaaag gctgttttgg taactgctat tgctaaatct tttagattgt atgagcattt
     2101 tatcaaagca agggcttgtt atttttttaa agatcattat gagtttaaaa aagaagaact
     2161 agaaaatttg ctaaaaaaac ataattgcga tacactaatg cttactttta aggattttgt
     2221 taaagttaaa gattttggtt ttaaatgtca aattatagaa ttaaatatag aattaaaaga
     2281 ttcgttaaga gaaaaaataa aaacttatat caaggagttt gaacagtgaa attggtcgag
     2341 agtagaaatg taaataatgt atcaagtttt aaggaagctt tgattaaccc aaacgctcca
     2401 gaaggagggc tttactcacc tttaaattta cctatttttg aaggagaaaa atatgccaat
     2461 ttgtcttata aagattttgc tttaaagctt atagaaagtt ttggttttgg cgaagaagag
     2521 ttttttaaaa aggctttgaa aagttacgaa agctttgatg ataaaaatac gcctatttct
     2581 ttgcaaaaaa tcgctgaaaa aacctatatt aacgagcttt ggcatgggcc tacaagagct
     2641 tttaaagata tggctttaca gccttttggc gtgcttttaa gcgaattttc aaaggataaa
     2701 aatattttaa ttatctgtgc tacaagtggc gatacaggac ctgcaaccct aaaaagcttt
     2761 gaaaatgcaa aaaatgttaa agtagcttgt atgtatccaa aaggtggcac aagtggagtt
     2821 caagagttgc aaatgcgagc tttagataag gataatttga aagtttttgc catagatgag
     2881 gattttgacg cagcgcaacg cactttaaaa gaattgcttt tttcaaaaga ttttcaaaac
     2941 gaaattaaag ctttaaatta tgagctttgc gcagctaatt ctgtaaattt tgggcgtatt
     3001 ttatttcaga ttatttatca ttattatgcg agtttaaaac tttttaatga gtttttagaa
     3061 gaagtgcaaa ttatcgttcc aagtggaaat tttggcaatg ctttaggggc tttttatgct
     3121 aaaaaaatgg gagctaaaat ttcaaaaatc aaaatcgctt caaatgcgaa taatattttg
     3181 agtgaatttt ttaatcatgg cgtttatgat ttgcgtgaaa aaagtcttaa gaagactatt
     3241 tctccagcta tggatatact tatttcatct aatatcgaaa gacttttgtt tgcgaaattt
     3301 aaagataaaa gaaccaaaga actgatgaat ttgttgaaaa atgagagata ttttaaactt
     3361 gaaaaagaag aattgcaaag tttacaagaa gattttgagg cggatttttg caccgatgaa
     3421 gaatgtatgc aatttatcaa acaaagcaag attttaatcg atccgcacac cgcaacttgt
     3481 tttaaaatgc ttgatccttt aaaacctagt attattacct ctacagcaga atggacaaaa
     3541 tttactccaa gtatgataaa agctttatac gatagggatt ctaagaatga aaaagaagat
     3601 ttaaaattta tagctaaaga gtttaatgtc caagttaaag atgaaatttt ggctttattt
     3661 gacttgaaaa atagcgatga aaaggtattt gaagccaaaa gtataaaaaa agaaatttta
     3721 gattggatgc aaaaatgatt attattcctg caagattaaa atcaagtcgt tttcatgaga
     3781 aaattttatg tgatgtaggt ggagtgccta tgtttgtggc tactgcaaga agggtaagta
     3841 gtgtggatga agtttgtata gctttagatg atgaaaaggt tttaagtatc gctaaagaat
     3901 atggtttaaa tgcagtttta acaagcaaaa atcatgaaag cggtacggat aggattaatg
     3961 aagcttgtaa gaaactatct ttaaaagatg atgagattat tatcaatgtc caagctgatg
     4021 agccttttat agaatgtgaa aatttattaa aatttaaaga atttgcaagt tcttgcttgg
     4081 ataaaaaagc ttttatggtg agttgttata aaaaaatcac ccaagaagaa gctatggatc
     4141 ctaatctggt taaagtgctt tgcgataaag aagggtatgc cttgtatttt tcaagagcta
     4201 aaatccctta tgaaagagaa aattacgagg aaagttttaa agggcattta ggtatttacg
     4261 cttatagtgt caaagcttta agggagtttt gttctttatc aagttctgca cttgaaagag
     4321 cggaaaaatt agagcagtta agagctatag aaaatggtaa aaaaatcaaa atgcttgaaa
     4381 tatcaacaac aagcatgggg attgatacta aagaagacta tgaaagggct ttaaaaattt
     4441 atttagaaaa ataactccac cccaaaacga aacagatttt gcttatatta ttttaatata
     4501 tttag
//
LOCUS       DARGEY010000111         4429 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.111, whole genome shotgun sequence.
ACCESSION   DARGEY010000111 DARGEY010000000
VERSION     DARGEY010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4429)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4429)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4429
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.111"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1201)
                     /locus_tag="SF008_001502"
     CDS             complement(<1..1201)
                     /locus_tag="SF008_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEG8233749.1"
                     /translation="MFRLSSVSSKLLLSVAISVILAIALMIAIVSFQVASYSEKEAKD
                     TILLSSKRYVNYIQGMLNEEVTLTKGVATSLNEMFQNNDHIDIDLIESLIKNTFDSSH
                     YAAYTFLYLKDTTVLSDMQNVDKKYISPDGKTFSMIFFDQIAEKSGGITTISTPNNFS
                     QLNLIQNIEQNAKYGDKDSVFVDSPRKLNYDNNEFLGINFGMPIFNNKGKFIGVIGYT
                     IDLLEISETILDPKFDFFEGDLRFLMNDQGIIAIHKNKNAILKTLFDINKDQSAQLIV
                     EAVKNHKDEILDNYIASTGDLSYASISSFSTLGNSSHWSVIVTAPKKSVLAPLYKLQY
                     IIISVAIIALIAILAVVYFFIRKIIGSRIPLILKSLENFFRFLNHEKIEVQTIEIKAN
                     DELGKMGK"
     gene            complement(1313..1822)
                     /locus_tag="SF008_001503"
     CDS             complement(1313..1822)
                     /locus_tag="SF008_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HEG8233750.1"
                     /translation="MHFTIFHIIAFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVSGKVQNLTKFEIKKCYLILS
                     ILNQQQVGGEIFNDKNIRNAKMQNTSVSYTIEIIDTLPGNTYKEFRASVPFPPTFNNP
                     EFYHTLKCI"
     gene            complement(1822..2352)
                     /locus_tag="SF008_001504"
     CDS             complement(1822..2352)
                     /locus_tag="SF008_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HEG8233751.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKIAITDQKMIQSSNDLIVDFNITNNS
                     KNNFKECKITAKIFADKIPNDNIIEEYKKKFIPFRQKSREIKDLKKNATQFQRIAFEN
                     FNYENNYTIRLVSECF"
     gene            complement(2364..3452)
                     /locus_tag="SF008_001505"
     CDS             complement(2364..3452)
                     /locus_tag="SF008_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HEG8233752.1"
                     /translation="MPADLNDYFNKKNRNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FVYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFVQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIAAQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDAKKQSAANMN"
     gene            complement(3464..4378)
                     /gene="ilvE"
                     /locus_tag="SF008_001506"
     CDS             complement(3464..4378)
                     /gene="ilvE"
                     /locus_tag="SF008_001506"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HEG8233753.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKELENAQIELLKANNFKSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQNTVLKIAHDLGITVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     PVTKKLQDAYFNVVYGRNEKYASMLTYI"
BASE COUNT         1460 a          673 c          635 g         1661 t
ORIGIN      
        1 ttttacccat tttgcccaat tcatcattag ctttaatttc aattgtctga acttctattt
       61 tttcatgatt taaaaagcga aagaaatttt ccaaagactt aagtataaga ggaattctag
      121 agcctatgat ttttcttata aaaaagtaca caacagccaa aatagcaatt agtgctatta
      181 tagcaacact aataataata tattgtagtt tatataaagg ggctaaaact gattttttag
      241 gagctgttac aattacactc caatgactag aattacctaa agtgctaaat gaagagatac
      301 tagcataact aagatctcct gttgaggcaa tataattatc taagatttca tctttatggt
      361 ttttaactgc ctcaacaatt aattgagcag attgatcttt gttaatatca aataaagttt
      421 ttaaaattgc atttttattt ttatgaatag caataatacc ctgatcgttc attaagaatc
      481 ttagatcccc ttcaaaaaag tcgaattttg gatccaatat agtctcggaa atttctagta
      541 aatctatagt atatcctata actccaataa atttgccctt attgttaaaa ataggcatac
      601 cgaaatttat acctaaaaat tcattattat cataattaag ttttctagga gaatctacaa
      661 aaacagagtc tttatctcca tattttgcat tttgttcgat attttgtatt agatttaatt
      721 gagagaaatt gtttggagtt gaaatagtag ttattccacc agatttttct gctatttgat
      781 caaaaaatat catagaaaaa gtttttccat ctgggctaat atatttttta tctacattct
      841 gcatatcact taatacagta gtatctttta aatagagaaa tgtatatgct gcatagtgac
      901 tactatcaaa agtatttttt ataagacttt caattaaatc gatatctata tgatcattat
      961 tttgaaacat ttcatttaac gatgtagcaa ctcctttggt tagtgtgact tcttcattta
     1021 acataccttg tatataattc acatatcttt ttgaagataa taaaatagta tctttggctt
     1081 ctttttctga atatgaagca acttgaaaag aaacaatagc aatcataaga gctatagcta
     1141 aaataacact aatagcaact gataataaga gttttgaact aacgctcgat agtctaaaca
     1201 tgaaaaacct cacataaatt ttttactaaa aataaagctc gttagcatat caaaaaaaat
     1261 aaaattaata taaaattatt ttttatagat gttttaaaac tatttaacaa tatcaaatac
     1321 attttaaggt gtgataaaat tcaggattat taaaagttgg aggaaaagga acgctagctc
     1381 taaattcttt ataggtatta cccgggagtg tgtctatgat ttctatagta taagaaacac
     1441 ttgtattttg cattttagcg ttacggatat ttttatcatt gaaaatttca cctcctactt
     1501 gttgttggtt taatatgcta agtatcaaat agcatttttt gatttcaaat ttagtaagat
     1561 tttgaacttt tccacttact ataacgcttt catgtcttag atctcttgtg taggttagtt
     1621 tgctaagatc ggcttgagtg gtgaattgat tgattgtcag aaaaatagaa tatatcaaaa
     1681 gtgcggtaaa aatagtagct atggtataag aaatcaaagc catttctttt tgtttgactt
     1741 ttagaaagat taaaatacaa atcaaggcaa agcaaataag taaaatgata aaagctataa
     1801 tatgaaaaat cgtaaaatgc attaaaaaca ctccgaaact aagcgtatgg tatagttatt
     1861 ttcatagtta aaattttcaa aagcaattct ttgaaattgg gttgcgtttt tctttagatc
     1921 tttaatttct ctactttttt gtctaaaagg gataaatttc tttttatatt cttctatgat
     1981 attatcatta ggtattttat ctgcaaaaat tttagctgta attttacatt ctttaaaatt
     2041 attttttgaa ttatttgtaa tgttaaaatc aacaattaaa tcatttgagc tttgtatcat
     2101 tttttgatct gtaatagcga tttttcgagt tcttacttca ttgtctatta gtttataccc
     2161 atagatataa actaaaaaac aaataataat atcaaatgca ataataaaaa gtgctgctat
     2221 aggtctatgg cgtaaaaata cgcaaagaag taaaacacaa gtgaagagaa aaaaaactaa
     2281 taaaatcagc atataatcta ctaaatataa atgagtagtg taaaaaagca cgatttctct
     2341 tagtttctcc acttgcgtat cctttagttc atgttggcag cactttgctt tttagcatct
     2401 ttagtatcaa cccaaatgtt tggcactgct ccacctggag ttaagaaaat tttagcatct
     2461 tgattgactt ttaaggcttc attaaattct ttttgagttt caatttgttt taaatttagc
     2521 aaaggggtgt ttaagctgtt tgcgatttct ttattagaat aagcttgtgc atctgcttct
     2581 atcttaacag ccatagcttt acctttggcg ctgattatgg ttgcatttgc ttccccttca
     2641 gctaaagcag ctttttttaa ggcttcttga ttagctcttt ctacttcata tttagttctt
     2701 tcagcctctt gttttgcaat ttgcacgcgt tcgatttgtt cttttacttt tgaaggtaaa
     2761 ataatttctc taagttgtac agcgcgaagt tctacaggtt catttggttg ggcttctatg
     2821 gtttttctta taccttcttc tatttgagcg gctattgtat tacgattagt aggaagttct
     2881 tcggctgtat attttcctac aacacttcgc actacatcac gaacaactgg atcgataatt
     2941 ttattttccc aatttaagct ccaagtagct atagtttgag gaacttgcag aggatttaag
     3001 cggtattgta ctgtaacatc aatagataca ggcaatccac gagagtcaag tacagaaatg
     3061 ctatttttat taataacacc tgaacctgaa gataaatttt cattacttcc ctctatagaa
     3121 gcatagttga tttgtcttac tctagtatcg attatggtta ttttttgtac aaaaggtaag
     3181 aaaaagtgaa gtcctggttc taatggattt gggtcatatt tacctgttgt tgatttaatc
     3241 cccatttccc cagaatttat caccataaaa ggttttgcaa cgattaaaaa taagataata
     3301 ataatcaccc cataaacaaa tggagagaat ttcccaaaac ctttaaaatt aaattctggt
     3361 gctttgaaat tgaaattttg acggttgttg tttccgttat tgttagaatt tctatttttt
     3421 ttattgaaat aatcatttaa atcagctggc atttatttcc tttttaaata taagttagca
     3481 tagatgcgta tttttcattg cgtccataaa ctacattaaa ataagcatct tgaagttttt
     3541 tggttacagg tcctcttaaa ccatttccta ttattcttgc atcaatattg ttaataggtg
     3601 tgatttcagc ggctgttccg gtaaaaaatg cttcatcagc agtataaact tcatctcttg
     3661 aaattctttg gcgaagcaca gtgataccaa gatcatgagc tattttaagc actgtatttt
     3721 gagtaatgct ttttaaagaa aaatcatttg gaggtgtgat taaaaccccg tcttttacaa
     3781 taaagaaaca ttctcctgtt ccttctgcga taaaaccttc ttcatcaagc attaaagctt
     3841 cttcatagcc tgcttcaata gcttcaaatt ttgcaatttg agagttaaga taatttgcac
     3901 ttgctttagc ttttcccatg catgatttaa cactatttct tgcaaaagac gaaattttta
     3961 cttttatgcc tttttctaaa ccttcttctc caaggtaagc accccattcc caagctgcaa
     4021 ttccaactct tacaggagct tttatatgat aaagtcccat aactccatcg cctaagaaaa
     4081 tcaaagggcg gatatagaca ttgcttttaa agttgtttgc ttttaagagt tcaatttgtg
     4141 cattttcaag ctctttttga gaaaaaggac aatttaaaag agtaattttt gcagactcta
     4201 aaagtctttt ggtgtgatct tcaagtctga aaattgctaa gcctttatct gttttatagg
     4261 ctctagttcc ttcaaaaaca gcattgccat aatgcaaaga atgggttaaa aagtgcaaag
     4321 ttgcatcttt aaaatcaact aattttccat ccatccaaat tttatctgct gagatcattt
     4381 tttacctttt atagttgttt atttcttaaa aaatattatt ttaagaata
//
LOCUS       DARGEY010000112         4326 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.112, whole genome shotgun sequence.
ACCESSION   DARGEY010000112 DARGEY010000000
VERSION     DARGEY010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4326
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.112"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..252
                     /locus_tag="SF008_001507"
     CDS             <1..252
                     /locus_tag="SF008_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233754.1"
                     /translation="TCFITFMFYVFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIIN
                     DLVIREKKMDIILEKLNEEREELKKNEFKERRRNAKRAA"
     gene            233..925
                     /locus_tag="SF008_001508"
     CDS             233..925
                     /locus_tag="SF008_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HEG8233755.1"
                     /translation="MLKEPPKAYAQMLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNDNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLEHECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            925..2004
                     /gene="fliM"
                     /locus_tag="SF008_001509"
     CDS             925..2004
                     /gene="fliM"
                     /locus_tag="SF008_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HEG8233756.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            2001..2843
                     /gene="fliY"
                     /locus_tag="SF008_001510"
     CDS             2001..2843
                     /gene="fliY"
                     /locus_tag="SF008_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HEG8233757.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNTSDTLKAP
                     LVYAIFNIANGGKIGILAGAVLMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVPESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            complement(2892..3488)
                     /locus_tag="SF008_001511"
     CDS             complement(2892..3488)
                     /locus_tag="SF008_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEG8233758.1"
                     /translation="MEKILKILLFLPILTLSAKAEWVVKSYQEIKNERVIRQTYEQSC
                     GASSLATLLNILDDKKFDELELLKIMSGQELYTDMVSFADLSDAVKKLGYESNSYQIN
                     RENLDKLVNIPMLVKIEDDPRFPHFVIIINHKGNYLQVLDPSHGEYISSKSQFFSIWD
                     RYNKGGYALIVAPKKELKPFKLNTPKSLHFDFSPFSLF"
     gene            complement(3473..4318)
                     /locus_tag="SF008_001512"
                     /pseudo
     CDS             complement(3473..4318)
                     /locus_tag="SF008_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277983.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1593 a          631 c          745 g         1357 t
ORIGIN      
        1 acttgtttta ttacttttat gttttatgtt tttgttcata ttgctattat gaattttata
       61 gatgtaaaga aaattagtgg cagaatcttt aataaacacg attatgaaaa aactagcaat
      121 aatattatca acgatttagt tattcgtgaa aagaaaatgg atataatttt agaaaagctc
      181 aatgaagaaa gagaagagct aaagaaaaat gaattcaaag aaagacgaag aaatgctaaa
      241 agagccgcct aaagcttatg cacaaatgct aaagaaagag caagatgagc ttgtgctttc
      301 ttacatgcca gctctgcgtg ctatggcttt tagactaaaa gaacgcttgc cttcaagtat
      361 agatgttaat gatcttatta gcataggcgt tgaagaaatg ataaagcttt cacgccgtta
      421 cgataaagaa caaaatgata acttctgggg ttttgcaaga aaaagagtta atggctctat
      481 gcttgattat cttagaagtc ttgatgtaat gagtcgaaat aatcgtaaaa ttattaaaga
      541 tattgatgca atcatggatg aatatttttt agaacatgaa tgcgaacctg atgatgagta
      601 tctagccaaa aaacttgatt tagatgtaga aaaaatcaaa gaagtaagaa cagctcatgc
      661 tattagctat accctgccca ttgatgagca aatcgaactt tataatgaag acaatacttt
      721 agaaaaaatt gaaaaagaag aacttttaga aaaaattcac gaagtgctag atgatcttaa
      781 agagcgcgat cagttaatta ttcagcttta ttattatgaa gaattaagcc taaaagaaat
      841 cagtgaaatt ttacaaatca gtgaaagcag aatttcacaa attcacaaaa aacttcttaa
      901 aaaacttaga gaaaggctag tgtaatggct gagatactct cccaagaaga aattgatgct
      961 ctacttgaag ttgtcgatga taacaccgac acacccatag cctcaaattc aaaagatgaa
     1021 aaagatgaaa gaaatatcgt tgtatatgat tttaagcgtc ccaacagagt ttcaaaagaa
     1081 caacttagga cgattaaagg catacatgat aaattagcaa gaaatttagc ctctcaaatt
     1141 tcatcgatga tgagaagtat tgttgaaact aaacttcatt cagtcgatca gatgacttat
     1201 ggagagtttt taatgtcttt gccaagccca acaagtttta atgttttttc tatcaaacct
     1261 ttagatggaa actgtgtttt agaaatcaat ccaagcatag cttttcctat gatagacagg
     1321 cttttaggtg gtcaaggcga tagctatgaa gcttcgcgtg agcttacgga tattgagctt
     1381 aatttacttg attctatttt gcgtatcatt atgcaaagac ttaaagaaag ctgggctacc
     1441 gtaactgaaa tttatcctag tatagaagct aaagaatcaa gtccaaatgt tgtgcaaatc
     1501 gtatctcaaa atgagattgt tatcatggta gtaatggaaa tcatcatagg aaattcaagc
     1561 ggaatggtaa atatctgcta tcctgtagta catttagaaa gtatattaag ccgtttagca
     1621 aaccgtgata ttatgatggg tgaaacctca gccaaaaaat cacgtaacaa agagcttaaa
     1681 actttaatcg gtcgtgctga agtggtatat gaggcaattt taggaaaaac cttaattaat
     1741 gttcatgaat ttttagaact taaacaaggc gatattttaa ggcttgatag agaagcagac
     1801 gataaagcta tagtaagtat cgataaaaaa gatgttttct tagcacaaat tggattgcat
     1861 cgttttagaa aatctattaa aattttagaa cttatacgca cagataaaga tgaaatcaaa
     1921 gaaattttgg aaaaatacga agaagagcgt aaagctaaag ccagtgttta tgatgagcct
     1981 gaagaggagg atgaagaaat atgatcaatg attttttaaa aatgtttaca aatgaatgca
     2041 tcagcaccat tgaaggttta acaggaaaaa gtgctgaatt tagcgaatat aaagaatttg
     2101 atgtcaatac aagcgatact ttaaaagcac ctttagtgta tgctatattt aatatagcaa
     2161 atggtggaaa aataggaatt ttagctggtg ctgttttaat gagtgctatt ggtgaatgga
     2221 tgatgggtga agaagagatc accaaaaacg ataaactggg tcctgatgaa atggatgcag
     2281 ctaaagaagc catccaaaat atcatttcag cattttctac aaccttagga gcccaaaaag
     2341 acattccaaa aatggatttt agcatagaat cttgtgaatt tgtgcctgaa agcgtagatt
     2401 ttaaagattt taaaaaatta tttttatatg atgtaaaaat aggcgattta gaagaacaag
     2461 tttctttagc catggatcaa acactccata acatcctaag cgggaaacct gctgaaacag
     2521 gaaatacaag cactgattct aatcacaata ctgaagaaaa agcgataatg cttagcgaag
     2581 agcttaaaaa tatcaatctt atcatggatg tgcgtttgcc tgttcgtgtg cgtataggca
     2641 ataaaaaaat gcttttaaaa gatgttttaa ctatggatat aggttcagtt gtggagctta
     2701 atcaacttgc aaacgatccg cttgaaattt taattgggga taaaagaatt gcttatggcg
     2761 aggtagtaat tgtcgatggt aacttcggcg ttcaaattac agaaattggt tctaaaaaag
     2821 aaagattaga acaactaaga taaaaagttt tagcctacaa attaagaata ataaatataa
     2881 acgaattaaa actaaaacaa actaaaaggg ctgaaatcaa aatgtaaaga ttttggagta
     2941 tttaacttaa aaggttttag ctctttttta ggagcaacaa ttaaagcata accaccttta
     3001 ttatatctat cccaaatact aaaaaattga cttttagaac ttatatattc tccatgactt
     3061 ggatcaagca cttgtaaata attaccttta tgattgataa ttataacaaa atgtggaaag
     3121 cgtggatcat cttcaatttt tacaagcatt ggaatattta caagtttatc caagttttct
     3181 ctattgattt gatatgaatt gctttcatag cctagttttt taactgcatc gcttaaatct
     3241 gcaaagctta ccatatccgt ataaagttcc tgtccactca taatctttaa aagttcaagt
     3301 tcatcaaact ttttatcatc aagtatattg agtaaagttg ccaaagatga agccccacaa
     3361 gattgctcgt aagtttgcct tattactctt tcgtttttaa tttcttgata ggatttaact
     3421 acccattccg cttttgcact caaagtaaga atgggtaaaa ataataaaat ttttagaatt
     3481 ttttccataa gcttatccca aatatgctat caggagaagc agagcttcct ccaaaactag
     3541 cattaacaga aactgcggta tctgaattaa tgctataagt agaacctaaa cttaaagttg
     3601 gaatagaacg cacttcagaa ttttgataac cattaatttt ttgctcggtt tgaaatcttt
     3661 gctctgctcc taaatctaaa gtaattttag gacttagaat aatagataaa tccccaccca
     3721 cataaatact atttccatac tctattttaa gggttttaaa ttttcttgat tggttataac
     3781 caaagccggt ataaatgcta tatacaacag gatcgctata tccccttaga ctagcttgta
     3841 agctttgtga ttttaggtaa aagtttttgg tttgattgac tgctttttct ctttgaacga
     3901 ctgcagcttg aaaggtaatt tgtggaatta aatctgcaat gctatcgcct gtataaataa
     3961 aacctagtca taaactatca aaacctattc tgtttttact agaatactca tttgtaaaaa
     4021 agtttgtata ttcttgtctt gcataacttc cgccccctga aataagtatg tcaaacttag
     4081 gtgttatggt ataaatgaaa gtttgagtta aaaacacttg ctttgtatca ttccaaattg
     4141 taggatctcc gcctattgtt atattaggat aaagagaata cgagtttgca tttcctgtgc
     4201 taagtaaaga aaagcttgta atacttctta aacctatttg ctttttaaac aaactgtcta
     4261 tatttagttc atcactagca aaaacacaac tgactaaaac cataaatgtt aaataaatct
     4321 ttttca
//
LOCUS       DARGEY010000113         4301 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.113, whole genome shotgun sequence.
ACCESSION   DARGEY010000113 DARGEY010000000
VERSION     DARGEY010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4301)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4301)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4301
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.113"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..292
                     /locus_tag="SF008_001513"
     CDS             <1..292
                     /locus_tag="SF008_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEG8233759.1"
                     /translation="NLSGFNLKKIKKPIIKKDELKLDLNYSKMYAKLGLNTKDQQGLM
                     AYLMNVFNELELVLCAAKIQTIRQRTRNIFIFQKNEKLEHSEQKLVNLLISE"
     gene            297..2093
                     /gene="glmS"
                     /locus_tag="SF008_001514"
     CDS             297..2093
                     /gene="glmS"
                     /locus_tag="SF008_001514"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEG8233760.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAIGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFELYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDPNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDILKSLCFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGNEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDFIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            2096..>4301
                     /locus_tag="SF008_001515"
     CDS             2096..>4301
                     /locus_tag="SF008_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEG8233761.1"
                     /translation="MKKFFCLTLVCKLFALSEFELHHIDKVHKLGYSGDTIIIGVADD
                     AFNQDHISLKDKILKSTYPTDTAGKQLIPDLKKSTHGSHVAGIAVGAKIGDSKPYGVA
                     YGAKFYGAGVFPNGSYTQIPDIYNFFKDVSIINNSWGINFYPYFNLKASNSGLVDCTQ
                     TNQGTSYNICNTPLEYVMKADKVANDMMRLSKDKGVLNVFAAGNEGILSPALHAILPS
                     YDESLRAWLAVGALDANEITLESDGTLIIKSQGLADFSNGFKGATNFSLVAAGVNINN
                     VDSSTNDKFTKKSGTSMAAPMVSGTAALVKQNFPFLDGKQIADILLSTANKNYKAPKF
                     TVKQVTDGTNQPKFLIVYISQDPPRIEDEIKRDLKQLYNGMQVQVNGQWIDYSDYIWD
                     NRDSAQSQKLNTSTISSINGVVRVEKEELFGQGILDAQKALKGLSILDANRLSDQDVL
                     KYEQEPNTAYYTINTAGYDAEFSNDISQRKWDESTHLSSAINKPTHLANLNIGLSKEG
                     EGILIISGQNTYEGATLIKQGELKLKGKVKNNAYVEQKAILSGNGIVGQNLNNKGIVR
                     PGNEDLNDLTVQGTYTQEGVDSKLQLDFGNYKNSKLIAKTYDIKSGNLEYIPLPKYYI
                     LNKPVKINLGDLEKSLSSFNHVLIQNTYALNFDFVLSDDLVSINKTLIKPNLKPNAYE
                     IPNTSLGNALRQLRSRADLSQTYQEFFASLDNGIDVKTKLNRIEGSGYLSTFS"
BASE COUNT         1524 a          531 c          853 g         1393 t
ORIGIN      
        1 aaatctttct ggttttaatt tgaaaaaaat taaaaagcca atcattaaaa aagatgagtt
       61 aaaattagac ttaaactatt ctaaaatgta tgccaaatta ggtcttaata cgaaagatca
      121 gcagggttta atggcgtatt tgatgaatgt ttttaatgaa cttgaacttg ttttatgtgc
      181 agcaaaaatt caaaccataa gacaaaggac gcgtaatatt tttatttttc aaaagaatga
      241 aaaattagaa catagcgagc aaaagttagt taatttatta ataagtgagt aaaaaaatgt
      301 gtggaatcgt aggttatata ggaaataatg aaaaaaaaca aattatacta aatggactta
      361 aagaattgga atatcgtggc tatgatagtg cgggtatggc agtgatgcaa gaaggagagc
      421 tcagtttttt taaagctgta ggaaagcttg aaaatttggc gaataaatgc acggattttg
      481 aaagtcaagg ttatggtttt gctataggtc atacaagatg ggcaactcat ggtaagccta
      541 ctgaaatcaa cgcacatcct catttaggac agtattcttg tgtgattcac aatggtatta
      601 tagaaaatta taaagaaatc aaagataaac ttgaaaaaga aggcgtgagt tttttaagtc
      661 aaaccgatac agaagttatt gtccagcttt ttgaattata tgcaagaaat ttgggagttt
      721 ttgaagcttg gcaaaaaacc atcaaagaac ttcgcggtgc ttttgctact ttgttagtaa
      781 caaaaaaaga tcccaatcat gtgtattttg caaaaaatgc tgctcctttg attatcggta
      841 aaaatgcaaa taaagaatgg tatttttctt caggtgatgc gcctttgata ggaagttgtg
      901 atgaggtaat gtatcttgaa gatttaagct tgggatacgc gagtaaagat gagcttgtcg
      961 tttatgaaaa tgatatttta aaatcacttt gtttttctaa gctttcaggc gataaggctt
     1021 atgcaaaaaa agacggcttt cgttttttta tggaaaaaga aatttatgaa caaagtcgcg
     1081 tgatgagtga agttttaatg gggcgtattc aaggcaatga agtcgttttt gatgagctaa
     1141 acaatgaaga tttaagtcaa gtagatgaaa tcacgctttg tgcttgtgga acaagctatc
     1201 atgctgcaat ggcaagtgct tatttgtttg aaagaattgc taaagttaaa gctaaagtag
     1261 aaattgcaag tgaatttcga taccgtgaag caattataaa aaaagattct ttatttatcg
     1321 ttatttctca aagtggagaa acagcagaca ctttagaggc tttaaagatt gcaaaagagc
     1381 agggtgctaa gacttttgca atttgcaatg tggataattc taatatagtg cgtttagcac
     1441 atctaagtct tttaactcgt gcgggcatag aaaaaggagt tgcttcaact aaagcttttg
     1501 ctactcaggt tttaacactt tggatgcttg ctatttttat ggcacaaaaa agaaatttaa
     1561 atgtttctgc tgaaattaaa gcacttttgc atactccaaa ttgcgtgagt gtaaaacagg
     1621 ctttacatga aaaaattcat cgtttatcca agcgttattt agatggacat ggctttttct
     1681 ttataggcag agatgtgttt tatcctttgg ctttagaagg agctttgaaa cttaaagaat
     1741 tatcttatct tcacgctgag ggttatcctg caggagagat gaaacatggc cctattgctt
     1801 tggctgattc taagctttat actatagctt taatgccaaa gcacatgctt tatgaaaaaa
     1861 caaaatcaaa tgttgaagag cttattgcta gggattctac agtgcttagc atttcacctt
     1921 tagaatttga tttaagtgat gattttataa aaaccaatga gcaagatcat tatatgtgtg
     1981 aattttttga aatgatggtc attactcaac ttttggcgat ggaaatttcc ataagacttg
     2041 gcaatgatgt ggatatgcca agaaatttgg ctaaaagcgt aacggtagaa tagaaatgaa
     2101 aaaatttttt tgtttaactt tagtttgtaa actttttgct ttaagcgaat ttgaacttca
     2161 tcatattgat aaagtacata agctagggta tagtggagat actattataa taggtgtagc
     2221 cgatgatgct tttaatcaag atcatattag tttaaaggat aagattttaa agtctactta
     2281 tcctactgat acagctggga aacagcttat acctgatttg aaaaaatcaa cacacggaag
     2341 tcatgtagca ggtatagctg ttggagcaaa gataggcgat agcaaacctt atggagtggc
     2401 ttatggggca aaattttatg gagctggggt gtttccaaat ggctcttaca ctcaaattcc
     2461 tgatatttat aattttttca aagatgtgag tattattaat aatagctggg gtattaattt
     2521 ttatccttat tttaatctta aggcttcaaa ttctggatta gtagattgta ctcaaactaa
     2581 tcaagggaca agctataata tctgtaatac tcctttggaa tatgttatga aagcagataa
     2641 ggttgctaat gatatgatga ggcttagcaa ggacaaggga gtattaaatg tatttgctgc
     2701 tggtaatgaa ggaattctta gccctgcttt gcatgcgatt ttaccaagtt atgatgaatc
     2761 tttaagagct tggttggctg ttggagcttt ggatgcaaat gagattactt tagaatcaga
     2821 tgggacttta ataattaaaa gtcaaggttt ggctgatttt agtaatggtt ttaagggggc
     2881 tacgaatttt tctttagttg ctgctggagt aaatattaat aatgttgatt caagcactaa
     2941 tgataagttt acaaaaaaaa gtggaacttc tatggcagca cctatggtaa gtggaacagc
     3001 ggcactggtc aagcaaaatt tccccttttt ggatggtaag caaattgctg atatactgtt
     3061 aagtacagca aataaaaatt ataaggctcc aaaatttact gttaaacaag taaccgatgg
     3121 aacaaatcaa cctaaatttc ttattgtgta tatttcgcaa gatccaccta ggatagaaga
     3181 tgaaataaaa cgggatttaa aacagcttta caatggaatg caagttcaag ttaatggaca
     3241 atggattgat tatagtgatt atatttggga taatagagat agtgcgcagt cacaaaaact
     3301 taatacttct actattagtt ctattaatgg agtagttaga gttgagaaag aagaattatt
     3361 tggacaagga attttagatg cacaaaaggc gttaaaagga ctgagtattt tagatgcaaa
     3421 cagactcagt gatcaggatg tattaaaata tgagcaagaa cctaatacag cttattatac
     3481 tataaacact gcaggttatg atgctgaatt ttctaatgat attagtcaaa gaaaatggga
     3541 tgaaagtact catttatcaa gtgctattaa taaacctaca catttagcta atcttaacat
     3601 agggttatct aaagaaggtg aaggtatttt gattatcagt ggtcaaaata cttatgaggg
     3661 tgcaacttta atcaaacaag gagaattaaa gcttaaagga aaagttaaaa ataatgctta
     3721 tgtagaacaa aaagcaatat taagcggtaa tggtattgta gggcaaaatt taaacaataa
     3781 aggcatagtt agacctggaa atgaagattt gaatgattta accgtgcaag gaacttatac
     3841 tcaagaagga gttgattcta aattgcaact tgattttggt aattataaaa attctaaact
     3901 gattgcaaaa acttatgata ttaagagcgg gaatttagaa tatattcctt tacctaaata
     3961 ctatatctta aataagccag tgaaaattaa tttaggagat ttggaaaaaa gtttatcatc
     4021 ttttaatcat gttttgatac aaaataccta tgctttaaat tttgattttg ttttaagtga
     4081 tgatttagtg agtattaata aaaccttaat aaaacctaat ttaaagccaa atgcttacga
     4141 aattcctaat acaagcttgg gaaatgcttt aagacaattg cgatctaggg cagacttgag
     4201 tcagacttat caggaatttt ttgcttcttt agataatgga atagatgtaa agactaaatt
     4261 aaatagaata gaaggttcag ggtatttaag cacttttagt a
//
LOCUS       DARGEY010000114         4282 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.114, whole genome shotgun sequence.
ACCESSION   DARGEY010000114 DARGEY010000000
VERSION     DARGEY010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4282
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.114"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            74..2170
                     /locus_tag="SF008_001516"
     CDS             74..2170
                     /locus_tag="SF008_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG8233762.1"
                     /translation="MINTQLASQIANTQKNDLKVDNSASKDKTNLKDNPKEALAQALK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKILSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLSVQIAQLANTNLSPKDTLKELKNIINSSKNE
                     NKQILNQSSFKALLNLSSKLENFKNYISKNPSHAQEKITPIANKILKELNSIKNDFFK
                     ALNKPENLMIKDPNILKQTATTFEKLENTLKNILGNQASKIQDKENILENLLSNKENI
                     KEEKLNHNTKNQDEEKYIKVSKEETLADDAKTNIKQNVKNEENLPKKEVNANLDSSTK
                     THEENIKENPKFYETKTESKTSINTNTNTNNTQNLNNSQNIQSNNNQTMQNIFKNQEF
                     IKQNIVKNLAFNVENLDLEQVQDLSKNLSNLSRRLNESLKELEPYTQNAKLNQAELKN
                     LEHKLNLSIKDLVQIKPKTEQDIAESLHHDVKSTLLQISNLAKNEGNEAVYNQANRLL
                     AQIEINQLMSLANDSINTYLPFSWDDLNDSKIMFRRGKKDKFFAQIKLEFAKLGDLEI
                     LISLNNEKYIDINIMAENIEFRKTIYENAHELKRNINKAGLLSANFFVGDIIRSKFDT
                     RNMKNLDLEMGMDKKV"
     gene            2167..2448
                     /locus_tag="SF008_001517"
     CDS             2167..2448
                     /locus_tag="SF008_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HEG8233763.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(2445..3245)
                     /locus_tag="SF008_001518"
     CDS             complement(2445..3245)
                     /locus_tag="SF008_001518"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEG8233764.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNIDMSEFKS
                     PCEYESLNALFTRTLQIPRKLEEGFISPSDGKILECGSTFLANEEHFAFSIKGHTYSI
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRK
                     YENLNFKKGEELGNFELGSTIVLISQKGLLTFNLKVGQGIKFGEKIAD"
     gene            complement(3242..4153)
                     /locus_tag="SF008_001519"
     CDS             complement(3242..4153)
                     /locus_tag="SF008_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEG8233765.1"
                     /translation="MFYASTYCLFFMTLAWDFVKLILALMGKRDKTYNLILRLIFELS
                     LIVLSVFLIYVSINNALKTPEVKSVDVEIPNLKKDLKIVMLTDIHLGKNLHENFLDKL
                     ITKVNLQSPDMVVIVGDLIDTNPKDLKNYISKLNDFNSTYGTFYALGNHEYYHGINEV
                     LDLLRKHTNMKILVNQNLDLGFINIAGLGDLAGLDRGLYAPDLARIKVDLNTSKASIL
                     LTHQPKTALLYDLSDFDLVLSGHTHGGQIFPFMFLVKLQQGFVHGLYDLGEKTKLYVS
                     SGAGFWGPSLRVFAPSEIVILNLKGKK"
BASE COUNT         1779 a          685 c          505 g         1313 t
ORIGIN      
        1 ctttttgcta tcaataaacc aaatatttta aataaaaaat ttaagaaaaa gcctggaaat
       61 atggtgatat ttgatgatta atactcaact agcaagtcaa attgccaata cgcaaaaaaa
      121 tgatttaaaa gtagataact ctgcttcaaa agataaaaca aatttaaaag acaatccaaa
      181 agaagcactt gcacaagctt taaagcaaaa tttaggttta agcaaggacg ctagtagcga
      241 ggaaatacta gcaaaatttg ttcaaaatga aacaggtacc aaattaaaag aacttgttaa
      301 taaactttta gatcaaatca atgctcaaaa aaatcccgat tcccctgtac ttaaacaagg
      361 aaaaaattta aatttagctc ctaattttgc taatgaatta aaaatcttaa gtacagaact
      421 tgcaaaaagt gatactttta cacaagtttt agacagatta aatcaaattt taaaacctgc
      481 cagtgaaata aaaaacaata acttagctcc tttgtttaaa aattcaggcg tatttttaga
      541 agctaaatta aaagatgccc taaacgaaga attactaccc aaaagttttc actctctttt
      601 aagtacaatc aaaggtctta gtagcgaaaa actaagcgtt cagatagccc agcttgcaaa
      661 tacaaattta agcccaaaag acactttaaa agaattaaaa aatattatta attctagcaa
      721 aaatgaaaat aagcaaattt taaatcaaag ttcttttaaa gcacttttaa atttaagttc
      781 taaattggaa aattttaaaa attatataag taaaaatccc agtcatgctc aagaaaaaat
      841 cacccctata gctaataaaa ttttaaaaga attaaattcc atcaaaaatg attttttcaa
      901 agctcttaat aagccagaaa atttaatgat aaaagatcca aacatcctta agcaaactgc
      961 taccaccttt gaaaaacttg aaaatacttt aaaaaatata ctaggcaatc aagcttctaa
     1021 aatacaagat aaagaaaata ttttagaaaa tcttttaagt aacaaagaaa atatcaaaga
     1081 agaaaaactt aatcataaca caaaaaacca agatgaagaa aaatatataa aagtatcaaa
     1141 agaagaaact ctcgcagatg atgctaaaac caatattaag caaaatgtaa aaaacgaaga
     1201 aaatttacct aaaaaagaag ttaatgcaaa tttagattct agcacaaaaa ctcacgaaga
     1261 aaatatcaaa gaaaatccaa aattttatga aacaaaaaca gaaagcaaaa cttcaatcaa
     1321 tacaaatact aacacaaaca acacgcaaaa tttaaataat tctcaaaata ttcaatctaa
     1381 caataaccaa actatgcaaa atatttttaa aaatcaggaa tttataaaac aaaatattgt
     1441 aaaaaattta gcatttaatg tagaaaattt agatctagaa caagtgcaag atttaagtaa
     1501 aaatttaagc aatctttctc gtagacttaa tgaaagctta aaagaacttg aaccctatac
     1561 tcaaaatgcc aagcttaatc aagcagaact taaaaatctc gaacacaaac tcaatctttc
     1621 tatcaaagat ctagtgcaaa ttaaaccaaa aacagaacaa gatatagctg aatctttaca
     1681 tcatgatgta aaatcaacac ttttgcaaat ttcaaatttg gctaaaaatg aaggcaatga
     1741 agctgtatac aatcaagcta atcgtctttt agcgcaaatt gaaatcaatc agcttatgtc
     1801 tttagctaat gattctatca atacttatct gcctttttct tgggatgatt taaatgattc
     1861 taaaattatg tttagacgcg gaaaaaagga caaatttttt gctcagatta aactcgaatt
     1921 tgcaaaactt ggggatttag aaattcttat ttctttaaat aatgaaaaat atatagatat
     1981 taatattatg gcagaaaata ttgaatttag aaaaaccatc tatgaaaatg cccatgagct
     2041 taaaagaaat atcaataaag caggactttt aagtgcaaat ttctttgtag gtgatatcat
     2101 aagaagtaaa tttgatacta gaaatatgaa aaatttagat cttgaaatgg gtatggataa
     2161 aaaagtatga gcaaaatcaa aagatcgatt aaaaaagctg tagctctagg ctatcaaaaa
     2221 gaaaaaaact ctgcaccaaa agtgcttgca agtggcaaag gcgaaagtgc tgctaaaatt
     2281 atttctttag ccaaggaaca cggagttcct attaaagaag atgaagattt aatagaaatt
     2341 ttaagcaagc ttgacttagg tgatgaaatt ccacctaata tgtataaagc tgtagctgaa
     2401 gtttttgcct ttatctatca aatggcaaat aaaactccta aaaactaatc cgctattttt
     2461 tctccaaatt taataccctg ccctactttt aaattaaaag ttaaaagtcc tttttgagag
     2521 attaaaacta tagtagaacc tagctcaaaa tttcctagtt cttcgccttt tttgaaattt
     2581 aaattttcat attttctagt aaaattatga gaaattttag cattggtttg tatgcttgca
     2641 tcaaaattaa aacgcatttt tcctacattt tgcgctccta caaaaacaag ccaaaaaata
     2701 cctttttcat tttgacattt caagctcact ctttcatttt ttacatataa attactaatg
     2761 cgttctaaat gtttttcatt tacgctataa agcactccac ttgtgtaagt tgcacttaaa
     2821 atttgcatat cacaagggct gtgataacga tgataatctt ttggagaaag ataaatattg
     2881 acataatcaa gcccattttt aagctcatct ttttcaaagc tatcttttaa aagctcctca
     2941 atgctataag tatgtccttt tatagaaaaa gcaaaatgtt cttcatttgc caaaaaagta
     3001 cttccacact ctaaaatttt accatcactt ggactgataa aaccttcttc aagctttctt
     3061 ggaatttgca aagttcttgt aaaaagagca tttaaactct cgtattcaca agggctttta
     3121 aattcactca tatcgatatt aaaatactta acataatttt cattaataac tttttgtatc
     3181 attttaggaa atttaatccc cgctacaaaa ccaaaaagtc tcgaactttc ttttgaaaaa
     3241 ctcatttttt tccttttaaa tttaaaatca ctatttcact cggagcaaaa actctaagac
     3301 ttggccccca aaatcctgct ccactactca cataaagctt agttttttct cctaaatcat
     3361 aaagcccatg aacaaaacct tgctgaagtt taactaaaaa cataaaaggg aaaatttgcc
     3421 ctccatgtgt atgcccactt aaaacaagat caaaatcact taaatcataa agcaaagctg
     3481 ttttaggttg atgtgtgagt aaaatactag ctttacttgt atttaaatcc acttttattc
     3541 ttgctaaatc aggagcatat aaacccctat caagtccggc taaatctcca agtccagcaa
     3601 tatttataaa acccaaatct aaattttgat tgactaaaat tttcatatta gtatgttttc
     3661 taagcaaatc caaaacttca ttgataccat gataatactc atgatttccc aaagcataaa
     3721 aagttccgta agtggagtta aaatcattaa gttttgagat gtaatttttt aaatctttag
     3781 gattagtatc aatcagatcc cctactatta caaccatatc aggactttgc aaattcactt
     3841 tagtgatgag cttgtctaaa aaattttcat gcaaattttt acccaaatgt atatcagtaa
     3901 gcatgacaat ttttaaatct tttttaagat ttggtatttc aacatcaaca ctctttactt
     3961 caggtgtttt tagagcatta tttatactta cataaattaa aaacacactt aaaactataa
     4021 gagaaagttc aaaaatcaaa cgcaaaataa gattatatgt tttatctctt ttacccataa
     4081 gagctaaaat caatttaaca aaatcccatg ctaaagtcat aaaaaacaaa caataagtcg
     4141 acgcataaaa catggctaaa atttcatacc aagtatcact taaatattca tctctacgaa
     4201 atattaaaaa cacagcttga gctaaaaaaa gcacaataaa aataaaggaa aaaattttat
     4261 aaaaatactt aaaaagagta at
//
LOCUS       DARGEY010000115         4278 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.115, whole genome shotgun sequence.
ACCESSION   DARGEY010000115 DARGEY010000000
VERSION     DARGEY010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4278)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4278)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4278
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.115"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..381)
                     /locus_tag="SF008_001520"
     CDS             complement(<1..381)
                     /locus_tag="SF008_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233766.1"
                     /translation="MHFNNNLVVHYIVNPSPLGWIVINLLTICLICYIFPLKNSLKHK
                     KLFSLKANVNSKNSRIIKYTGIAAFLGGLIGIWYNFEGFYQLLFFFELENENLKTLWS
                     LQVSVSSVITGMLLLLIYVINLAIV"
     gene            complement(383..970)
                     /gene="pglD"
                     /locus_tag="SF008_001521"
     CDS             complement(383..970)
                     /gene="pglD"
                     /locus_tag="SF008_001521"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HEG8233767.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECVFLDDLKGMKFES
                     TLPKYDIFIAIGNNEIRKKIYQKILENGFKIVNLIHKSALISPSASIEENAGILIMPY
                     VVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL
                     PNLSLADDSILGGGATLVKNQDEKGVFIGIPAKRM"
     gene            complement(957..1559)
                     /gene="pglC"
                     /locus_tag="SF008_001522"
     CDS             complement(957..1559)
                     /gene="pglC"
                     /locus_tag="SF008_001522"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HEG8233768.1"
                     /translation="MYEKVFKRIFDFILALVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLPLYNKEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTGKFNGKN"
     gene            complement(1552..2682)
                     /gene="pglA"
                     /locus_tag="SF008_001523"
     CDS             complement(1552..2682)
                     /gene="pglA"
                     /locus_tag="SF008_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HEG8233769.1"
                     /translation="MRIGFLSHAGASIYHFRMPIIKALKDRKDEVFVIVPQDEYTQKL
                     RDLGLKVIVYEFSRASLNPFVVLKNFFYLAKVLKNLNLDFIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFVINSLYKLSFKFAHQFIFVNESNAEFMRN
                     LGLKENKICVIKSVGINLKKFFPIYVESEKKELFWKNLNIDKKPIVLMIARALWHKGV
                     KEFYESATMLKDKANFVLVGGRDENPSCASLEFLNSGAVHYLGARSDIVELLQNCDIF
                     VLPSYKEGFPVSVLEAKACGKAIVVSDCEGCVEAISNAYDGLWAKTKNAKDLSEKISL
                     LLEDEKLRLNLAKNAAQDALQYDENNIAQRYLKLYDRVIKNV"
     gene            complement(2692..>4278)
                     /gene="pglB"
                     /locus_tag="SF008_001524"
     CDS             complement(2692..>4278)
                     /gene="pglB"
                     /locus_tag="SF008_001524"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HEG8233770.1"
                     /translation="FIGIYLWWYPSSYTLNVALIGLFLIYTLIFHRKEKIFYIAVILS
                     SLTLSNIAWFYQSVIIVILFALFALEQKRLNFMIIGILGSATLIFLILSGGVDPILYQ
                     LKFYIFRSDESANLTQGFMYFNVNQTIQEVENVDFSEFMRRISGSEIVFLFSLFGFVW
                     LLRKHKSMIMALPILVLGFLALKGGLRFTIYSVPVMALGFGFLLSEFKAILVKKYSQL
                     TSNVCIVFATILTLAPVFIHIYNYKAPTVFSQNEASLLNQLKNIANREDYVVTWWDYG
                     YPVRYYSDVKTLVDGGKHLGKDNFFPSFSLSKDEQAAANMARLSVEYTEKSFYAPQND
                     ILKSDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPARMSLIFSTVAS
                     FSFINLDTGVLDKPFTFSTAYPLDVKNGEIYLSNGVVLSDDFRSFKIGDNVVSVNSIV
                     EINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSAYVQMFFLGNYD
                     KNLFDLVINSRDAKVFKLKI"
BASE COUNT         1580 a          802 c          464 g         1432 t
ORIGIN      
        1 aactattgct aaatttataa catatatcaa caataataac atacctgtta tcacagaaga
       61 aactgatact tgcaaactcc aaagtgtttt taaattttca ttttctaatt caaagaaaaa
      121 aagaagttga taaaaacctt caaaattata ccaaattcct attaatccac ccaaaaaagc
      181 agcaatacct gtatatttta taatcctact atttttagaa tttacatttg ctttaagact
      241 aaaaagtttt ttgtgtttta aagaattttt caaaggaaat atgtagcata ttagacatat
      301 ggttagtaaa ttaatgacaa tccaccccaa aggcgaagga tttactatat agtgaacaac
      361 aagattgtta ttaaaatgca atttacatcc tttttgcagg tattcctata aaaacacctt
      421 tttcatcttg atttttaact aaagttgctc caccacctaa aatactatca tctgctaagc
      481 ttaaattagg caaaacacaa gaattaatcc ctaaaaaaca atttttacca atttttacat
      541 tacctgcgca tttagcccct acactcacat gagaaaattc ccctatcaca cattcatgtt
      601 caatcacact tgaagtattc aaaatcacgc ctttttctat tttggcttta gcattaatta
      661 ccacgtaagg catgattaaa attcctgcat tttcttctat acttgcacta ggacttataa
      721 gtgcgctttt atggataaga ttaacgattt taaagccatt ttctaaaatt ttttgataaa
      781 tcttttttcg aatttcattg tttcctatgg ctataaaaat atcatatttt ggcaaggtgc
      841 tttcaaattt cattccttta agatcatcta aaaaaacaca ttctttataa cccatatttt
      901 tagccacatc ttcacaaaca agcccatgac cactagcacc ataaatataa attttttcag
      961 ttcttgccat taaatttccc cgttgtaaca tgtccttctt tgcttacccc acttcgtttt
     1021 aaaaccttta aggctgttaa aaacatgatt tttaaatcaa gtaaaaaaga aatatttttc
     1081 acataataca catcaagttc aaattttttc tgccaagaaa tagcatttct accatttacc
     1141 tgcgcccatc ctgttatacc tggacgcact ttatgacgca atttttgctc tttattgtaa
     1201 agaggcaaat actcaaccaa aagaggccta ggtcccacaa aactcatatc cccttttaaa
     1261 acattaaaaa gttgcaaaag ctcatccaaa cttaagcttc taacgatttt tccaaaagct
     1321 ttcaaacgca attcatcact taataactca cccttttcat ctctttcatc gctcatggtt
     1381 ttaaatttat aaattttaaa aattttttca tctaacccgg gacgattttg ggtaaaaatc
     1441 acacttcctt gagtgatttt taaaagtaaa gcagtgatta aaatcaccgg agaaaaaagc
     1501 actaaaagta ctaaagctaa aataaaatca aaaattcttt taaaaacttt ttcatacatt
     1561 cttaattacc ctatcataaa gttttaaata acgctgtgcg atattatttt catcgtattg
     1621 taaagcatct tgggcggcat ttttagctaa atttaatctt aatttttcat cttctaataa
     1681 aagtgaaatt ttttcgctta aatccttagc attttttgtt tttgcccaaa gtccatcata
     1741 agcattagaa atagcctcta cacaaccttc acaatcgctc accactatag ccttaccaca
     1801 agcttttgcc tccaaaacac ttacaggaaa gccttcttta tagcttggca aaacaaaaat
     1861 atcacaattt tgcaaaagtt ctacgatatc acttctagca cccaaataat gcactgcgcc
     1921 agagtttaaa aactccaaac tcgcacaaga aggattttca tctcttccac caactaaaac
     1981 aaaatttgct ttgtctttta gcatagtagc actttcataa aattctttta cacctttatg
     2041 ccataaagct cttgctatca taagtacaat gggtttttta tctatgttta aatttttcca
     2101 aaaaagctct tttttttccg attctacata aataggaaaa aattttttta aattgatccc
     2161 tacagatttt atcacgcaaa ttttattttc tttaagtcct aaattccgca taaactcagc
     2221 attactttca ttgacaaaaa taaattggtg tgcaaattta aaacttaatt tataaagact
     2281 attaataaca aaacgcacta aatttgcctt aaaaccttga tctatataaa aagatcccaa
     2341 gccttctact aaggcaaaac gataaggaat ttttgcccat tttgctgcta aaattccaaa
     2401 agtattgctt ttgtgtgccg cactttgaat aaaatcaaga tttaaatttt tcaaaacctt
     2461 agcaagataa aaaaaattct ttaaaaccac aaaaggattt aaactagctc ttgaaaactc
     2521 ataaacaatt acttttaagc caagatctct aagtttttgc gtgtattcat cttgcggcac
     2581 tataacaaaa acttcgtctt ttctatcttt taacgctttt ataataggca ttctaaaatg
     2641 ataaatactc gctcctgcat gtgataaaaa tcctattctc attttcaacc cttaaatttt
     2701 aagtttaaaa actttagcat ctctagaatt aatcaccaag tcaaataaat tcttatcata
     2761 atttcccaaa aaaaacattt gcacataagc actattaaac atggttttat ccattaaaat
     2821 aaattgtgcg taaggaatag cactatcctt taaataaaaa atataaaact gagccttatc
     2881 atcaattgga gtgattttgt attcaccttg tttaatagaa ttaatctcta cgatactatt
     2941 tacagaaacc acattatcgc ctattttaaa acttctaaaa tcatcgctta aaaccactcc
     3001 gttgctaaga taaatttctc catttttaac atcaagtgga taagctgtgc taaaggtaaa
     3061 aggtttatcc aaaactcctg tatctaaatt aataaaagaa aaactagcca ccgtagaaaa
     3121 aatcaaagac attctagcgg gcatataaag ataaatatca cgagtttttg gtgtatcgat
     3181 tttaaaatca ggttttgata atgaagctag aaataaatcc acattgcttt gattataatc
     3241 tttcatcatg gcttgtaaaa tgtctgattt taaaatatca ttttgcggag cataaaagct
     3301 tttttctgta tattctacac taagtcttgc catattagct gcagcttgtt catctttact
     3361 taaagaaaaa gaagggaaaa aattatcctt acctaaatgc tttccaccat ctactaaagt
     3421 tttcacatcg ctataataac gcacaggata accataatcc caccaagtta ccacataatc
     3481 ttctctattg gctatatttt ttaattgatt taataatgat gcttcatttt gagaaaaaac
     3541 tgttggcgct ttatagttgt aaatatggat aaatactgga gccaaagtca aaatagttgc
     3601 aaaaacaata caaacatttg aagttaattg gctatatttt ttaaccaata tagccttaaa
     3661 ctcgctcaat aaaaaaccaa atcctaaagc cattacaggt acagaataaa tggtaaatct
     3721 aagtcctcct tttaaggcta aaaacccaag caccaatata ggtaaagcca taatcatact
     3781 tttatgtttt ctcaaaagcc atacaaaacc aaacaaagaa aacaagaaaa caatttcact
     3841 accactaatt cttcgcataa attcgctaaa atctacattt tcaacttctt gtatggtttg
     3901 attaacatta aaatacataa agccctgtgt taaattcgca ctttcatcac ttctaaaaat
     3961 ataaaattta agctgataaa gtatgggatc aaccccaccg cttaaaatca aaaatatcaa
     4021 agttgcacta cctaaaattc ctataatcat aaaatttaag cgtttttgct ctaaagcaaa
     4081 taaagcaaaa agtattacta taatgacact ttgataaaac catgctatat ttgaaagagt
     4141 aagagaagac aaaatcacag ctatataaaa aatcttttct tttctatgaa aaataagtgt
     4201 ataaattaaa aaaagtccaa ttaaagctac atttaaagta taacttgaag gataccacca
     4261 aagataaatt cctataaa
//
LOCUS       DARGEY010000116         4154 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.116, whole genome shotgun sequence.
ACCESSION   DARGEY010000116 DARGEY010000000
VERSION     DARGEY010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4154)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4154)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4154
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.116"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            45..2156
                     /locus_tag="SF008_001525"
     CDS             45..2156
                     /locus_tag="SF008_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HEG8233771.1"
                     /translation="MTQLSTKILWLFVATLGAICFGYLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGRFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMRFIRPGRV
                     GEASIIGFVLLILAIHYGSVIAADPYWAKIFTLEAPILAIVMMAYGFIASVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFDGTGPVFAGGVFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHALAVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGTDVVNVAQTISSWGFSITPEEITTLTTNIGEHTILSRTGGAPTFAIGV
                     ALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGDI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATTIL
                     VKMGKARYTWVTLVPAVFVLVATLYGGIQKIMPYEEGNKVANAVSHVAAVSIQSQKIK
                     DLEFKLNNTKDEKEISVIKKEISIATQNKVGNLLNAILCVFFMIATLLVIISCIGICL
                     GKIKIPLKETKYIKIDEFQKI"
     gene            2137..2334
                     /gene="kcuS"
                     /locus_tag="SF008_001526"
     CDS             2137..2334
                     /gene="kcuS"
                     /locus_tag="SF008_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HEG8233772.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEHMKQKHPGKIPKT
                     RGEFFKECLDKKYNSGGLNKC"
     gene            complement(2374..2787)
                     /locus_tag="SF008_001527"
     CDS             complement(2374..2787)
                     /locus_tag="SF008_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEG8233773.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVTYVSVTRDGKKKPISEELKRIHGFLNA"
     gene            2849..>4154
                     /gene="ciaB"
                     /locus_tag="SF008_001528"
     CDS             2849..>4154
                     /gene="ciaB"
                     /locus_tag="SF008_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HEG8233774.1"
                     /translation="MNNFKEIAKLVRKYKERNNALYEFLDKEDVGEYFRSLISLSELK
                     QDKTTMLAILRRLVDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSLIQGVHNIGLIMNIFEISWTKEIIEKNNKILSTQFPNLDDAME
                     FLRKNHLYQKTPEGEICERSYGVLVRIGNLWKFVPYARFFENEILKLEFAFENMIDQL
                     KIFASSEEEKAYIEYFEKLKLAFCEKDEDRVIKAWQEAEFAWMKVKSPLQVGHPLEYY
                     EDNYTHAVALEWDIRIEDENDFDVLKFGNEIKESFEHVYKNIGLEDCELEKEVLSNIE
                     KTQLYICTPMIFYGAELKGLFSAQVVPNDEFVSSKAGKKIFAFINFVYENAKTKPFMK
                     ISSEVFDKEFLDFGRNILFYQEKIWKRVYEVSTIGHEFGHIFF"
BASE COUNT         1355 a          511 c          811 g         1477 t
ORIGIN      
        1 aaatctgcta ttctttgaaa atattttatt ttcttaggag aaatatgact cagttaagta
       61 ctaaaatttt atggttgttt gttgcaactt taggcgctat ttgttttggt tatttagctt
      121 tacaaaatgg cgaaagtgta tcagcgattt atttggtggt tgctgctgta tgtatttata
      181 tgataggata tagattttat gggcgttttg tagcttataa ggttttagaa cttgataaaa
      241 atcgtgcaac accagcactt gtagaaaatg atgggcgtga ttttgtgcct acaaataaag
      301 ctgtattatt tggacatcat tttgctgcta ttgcaggagc aggtccatta gtaggaccta
      361 tcttggccgc tcaaatggga tatttgcctt ctatgctttg gattttagta ggaggagttt
      421 tagcgggtgc tgtgcatgat tttgttgttc tttttatatc tactcgtaga aaaggtagaa
      481 gtcttggcga gatgattaag gatgagatgg gtaaatttac aggtggagtt gctatggtgg
      541 cgatttttgg cattatgctt attattattg ccattttagc tatggtggtt gtaaaagctt
      601 tagcagaatc tccatggggt ttatttacta tcgcaatgac tattcctata gcaatattta
      661 tgggcattta tatgcgtttt atccgtccag gtagagtagg ggaggcttct ataataggtt
      721 ttgtgctttt aattttggct attcattatg gtagcgttat agctgctgat ccttattggg
      781 ctaaaatatt tactttagaa gctccaattt tggcaattgt tatgatggct tatggtttta
      841 ttgcttctgt tttacctgtg tggtttttac ttgctccaag agattatctt tcaacttttt
      901 tgaaaatcgg tgttattgtg gtaatggctg tagctattgt tttggttgct cctgatttac
      961 aaatgccaaa agcaaatact cagtattttg atggaacagg tccagtattt gcaggtggag
     1021 tgtttccatt tttatttatt accattgctt gtggtgcgat cagtggtttt catgctttga
     1081 tttctagtgg aactactcct aaaatgcttg aaaacgaaac tcatgctttg gctgttggat
     1141 atggctctat gcttgctgag agtgctgtgg cgattatggc tttaatttgt gcttgtattt
     1201 tacatccagg tctttatttt gctataaatt caagctctgc tttgatagga acagatgttg
     1261 taaatgtagc acaaactatt tcaagttggg gatttagtat tactcctgaa gaaattacta
     1321 ctttaaccac aaatatagga gagcatacta tactttcaag aacaggggga gccccgactt
     1381 ttgctatagg tgtagctttg atcttacatg aactttttgg cggcgtggat ttgatggctt
     1441 tttggtatca ttttgctata ttgtttgaag ctttatttat tttaacagcg gtggatgctg
     1501 ggacaagggc ttgtcgtttt atggtgcaag atatattggg taatgtttat aaacctttag
     1561 gagatattca taattatcca gctggacttt tggctacggc tttaagtgtt gcaggttggg
     1621 gatattttct ttatcaaggt gccattgatc ctaagggagg aatttatacg ctttggcctc
     1681 tttttggcgt gagtaatcaa atgcttgcgg gtatggcttt acttcttgct acaactatac
     1741 ttgtaaaaat gggcaaggca agatatactt gggttacttt agtacctgcg gtatttgtct
     1801 tagtggcaac tctgtatgga ggaattcaaa aaattatgcc ttatgaagaa ggcaataaag
     1861 tagcaaatgc ggtaagtcat gtagccgccg ttagcataca aagtcaaaaa attaaagatt
     1921 tagaatttaa attaaataat actaaagatg aaaaagaaat ttctgtaatt aaaaaagaaa
     1981 tttcaatagc cactcaaaat aaagttggaa atttacttaa tgcaattctt tgtgtgttct
     2041 ttatgatagc taccttgctt gttataattt cttgtatagg aatttgctta ggtaaaatta
     2101 aaattcctct taaagaaact aagtatatta agattgatga atttcaaaaa atttaagtat
     2161 tattatgaaa aagccgaaag gttttttcat cccttggtgg gactttctag ttatgataag
     2221 tatttagaac acatgaaaca aaaacatcca ggaaaaattc caaaaaccag aggggaattt
     2281 ttcaaagaat gtctagataa aaaatataat agtggcggtt taaataaatg ctgataagct
     2341 taaaggataa agttttatca tacaaaataa gctttaagca tttaaaaagc catgaattct
     2401 tttaagttct tcactaatag gctttttctt tccatctctt gtaacactta cataagttac
     2461 taaagccgaa gttacattaa tgcaagaagt acaaccttga gaatccactc tttgagctgt
     2521 gacttctact tcaacgctga ttgaagtgtt gcccacattt acaactttag agtaacaaga
     2581 aattatatcg cctataaaaa caggttcttt aaaaactact ttatccatag agatggttac
     2641 aacgcgttca ggagaaagtt ctcttgctgc gatagctcct gctaaatcga tttgtgaaag
     2701 tatccatccg ccaaaaatat ttcctgctgg atttgtgtca cttggcatag ctacaatttt
     2761 taattttggt tctcccatat ctctcatttt tactccttat tttaaaaaat gaattataat
     2821 taaaaaagtt aaaaaggaga ataaaagtat gaataatttt aaagaaatag ctaaattggt
     2881 tagaaaatac aaagaaagaa ataatgcgtt atatgagttt ttagacaaag aagatgtggg
     2941 cgagtatttt agatctttga tttctttaag tgagttaaaa caagataaga caactatgct
     3001 agccatactt aggcgtttgg ttgatttaaa ggaagaaaat ttagttcaag agtggaaaaa
     3061 aaacaacttt aaggaagata agattataga gttaaaacat aagttctatg aagaggttag
     3121 aaagttttat gaaaaagaac atcaaaattt aattaatgaa ataaaagaga aaaaactttt
     3181 aaataatttt tatcagtcct taatacaagg agtgcataat ataggtttaa ttatgaatat
     3241 ttttgaaatt tcttggacta aagaaattat agaaaaaaat aataaaattt tatctactca
     3301 atttccaaat ttagatgatg caatggaatt tttacgtaaa aatcatttat atcaaaaaac
     3361 tccagaagga gaaatttgtg agcgaagcta tggtgtttta gttagaatag gaaatttatg
     3421 gaaatttgtt ccttatgcga gatttttcga gaatgaaatt ttaaaattag aatttgcttt
     3481 tgaaaatatg attgatcagc ttaaaatatt tgctagcagc gaagaggaaa aagcttatat
     3541 agaatatttt gaaaaattaa aattagcgtt ttgtgaaaaa gatgaagata gggttataaa
     3601 agcttggcaa gaagctgaat ttgcttggat gaaagtaaaa tcacctttac aagtgggaca
     3661 tcccttagaa tattatgaag ataattatac tcatgcggtg gcattagaat gggatataag
     3721 aatagaagat gaaaatgatt ttgatgtttt gaaatttggt aatgaaatta aggaaagttt
     3781 tgaacatgtt tataaaaata taggacttga agattgtgaa ttagaaaaag aagttttatc
     3841 taatatagaa aaaactcaac tttatatttg cactccgatg atattttatg gtgctgaact
     3901 taaaggttta ttctcagctc aagtcgttcc aaatgatgag tttgtaagtt ctaaggcggg
     3961 caaaaaaata tttgccttta taaattttgt atatgaaaat gctaaaacaa agccttttat
     4021 gaaaatttct agcgaggttt ttgataaaga atttttggat tttggaagaa atattttatt
     4081 ttatcaggaa aaaatttgga aaagggttta tgaagtatca actataggcc atgaatttgg
     4141 tcatatattt ttta
//
LOCUS       DARGEY010000117         4135 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.117, whole genome shotgun sequence.
ACCESSION   DARGEY010000117 DARGEY010000000
VERSION     DARGEY010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4135)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4135)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4135
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.117"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            61..837
                     /gene="surE"
                     /locus_tag="SF008_001529"
     CDS             61..837
                     /gene="surE"
                     /locus_tag="SF008_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEG8233775.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            827..1486
                     /locus_tag="SF008_001530"
     CDS             827..1486
                     /locus_tag="SF008_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine dehydratase"
                     /protein_id="HEG8233776.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFKNLTLIDADKFEITNQNRQIHSENIGEEKAKVFERIYKVKGIVSKIDENFLKNFD
                     LSEFDLIIDAIDDIPAKVALAHLIDFKKQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLDKK
                     S"
     gene            1470..1928
                     /locus_tag="SF008_001531"
     CDS             1470..1928
                     /locus_tag="SF008_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8233777.1"
                     /translation="MIRKADIKDLNACLSLFEQSVKTLCAKDYTKDQICAWIKIDRQQ
                     WEEKFKYDEIFVYEKRGKIASFISVKQEQKLLDLLFTHPDFVRQGLAQNLLDFILKTY
                     LHNEIYTFASLSAKDFFLKNGFELIRENKVIKEGQNLKKFLMKKDVVYKN"
     gene            complement(1991..2371)
                     /locus_tag="SF008_001532"
     CDS             complement(1991..2371)
                     /locus_tag="SF008_001532"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HEG8233778.1"
                     /translation="MNITLLKSKIHRASVTEARLDYIGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTVTKITNYEKHGAIF"
     gene            complement(2368..3216)
                     /locus_tag="SF008_001533"
     CDS             complement(2368..3216)
                     /locus_tag="SF008_001533"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEG8233779.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRPGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(3227..4051)
                     /gene="panB"
                     /locus_tag="SF008_001534"
     CDS             complement(3227..4051)
                     /gene="panB"
                     /locus_tag="SF008_001534"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEG8233780.1"
                     /translation="MRKSILSFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
BASE COUNT         1409 a          670 c          660 g         1396 t
ORIGIN      
        1 actatgaagc tttaaaaaaa tatgttaaaa tccagatttt tatcttttgc aaggaagaca
       61 atgaaagaaa ttcttatcac taatgacgat ggttatgaaa gcgaaggact taaaaaactc
      121 attaagatgt taacaaaaga atttaaagcc aagatcacca tagtagctcc tgctagtgaa
      181 aaatcagctt gttcgcactc tataacccta accaaacctt tgcgttttgt taaagtggga
      241 aaaagatttt acaaacttga tgatggcact ccagcagatt gtgtttatct tgctttgcat
      301 gctttataca aaaagcgttt gcctgatctt gtaataagtg ggattaataa aggtgctaat
      361 gtaggcgagg atattaccta ctcaggaact tgcgcaggag ctatggaggc ggttttacaa
      421 ggaattcctg ctatcgctct ttctcaattt tataaaaaaa gcgaaaaaga actagactat
      481 aaaaatgctt tacaaattac caaaaaaatc attcaaaata tttttgataa aggttttcct
      541 ttggaaaaaa aagaattttt aaatatcaat tttcctgcaa aatcaaaaat caaaggcatt
      601 aaaatttgta aagcaggcaa aagggtttat aattttgaag cccattcaaa tgtcaatcca
      661 cgaggagtgg agtactattg gcttgcagcg gcgaatttag actttgaaga tgagaaaaat
      721 agcgatattg ccttgcttaa aaaaggctac gctacaataa cacctataat gctggatctt
      781 acagcttatg aaagaatgaa aaaagttaaa aaatggttaa aggcaaatga tgaatgatag
      841 atttacacgt ataaaatggc tagttggaga agaaaaattt caaaaaattt cacaaacaaa
      901 agttttggtt tgcggacttg gtggagtggg tggaatttgc gttgatgcgc tttatcgtag
      961 tggttttaaa aaccttactt taatcgatgc ggataaattt gaaattacca atcaaaatcg
     1021 ccaaattcat agcgaaaata taggcgaaga aaaggctaaa gtatttgaaa gaatttataa
     1081 ggttaaaggt atagtcagta aaatcgatga aaatttttta aaaaattttg atttaagcga
     1141 gtttgatctt atcatagatg ccattgatga tattcctgca aaagtagctt tggctcatct
     1201 tatagatttt aaaaaacaaa tttttatctc ctcaacaggt ggagctagaa agcttgatcc
     1261 aacacgcatt aaaactacaa gtatttttaa aactcacggc gatgctttag cgaaaaaatt
     1321 tcgttatgag cttagaaaat caggctttaa gggaaatttt gatgtggtgt tttctgatga
     1381 agaagctcat tgtaaagacc ttggttcatt tatgggtgta acagcttctt ttggacttgc
     1441 tttagcttct ttggctttaa ggaaagtact tgataagaaa agctgatatt aaagatttaa
     1501 atgcttgttt gtcgcttttt gagcaaagcg taaaaacact ttgtgctaag gattatacaa
     1561 aagatcaaat ttgtgcttgg attaaaattg atagacaaca atgggaagaa aaatttaaat
     1621 atgatgagat ctttgtctat gaaaaaagag gaaaaatcgc aagttttata agtgttaaac
     1681 aagagcagaa attgcttgat ttgcttttta ctcatcctga ttttgttaga caaggtttag
     1741 cacaaaattt acttgatttt attttaaaaa cttatttgca taatgaaatt tacactttcg
     1801 catccttaag tgctaaagat tttttcttaa aaaatggttt tgaacttata agggaaaaca
     1861 aggttatcaa agagggacaa aatttaaaaa aatttttaat gaaaaaagat gtggtttata
     1921 aaaactagaa gttaagataa gcaaaaataa tggattaaaa gatagaaaaa attacaaaaa
     1981 tagctagatg ttagaaaata gctccgtgtt tttcataatt tgttattttt gtaacagtgt
     2041 tattttcatc cacaaaaaca acttttggtt taaatgtttt tgcttcttct tcattaaaat
     2101 cagcataaga catgatgatc accttatctc ccacttctgc aagacgagcc gcagcaccat
     2161 ttaagcatac aactccttct tcttgcgtgg ctatggtata ggtttcaaat ctagcgccat
     2221 tattgacatt gactacttgg actttttcgt attctaaaat tccactcgct tgcaataatt
     2281 tttcatctat acttatactt cctatataat caagcctagc ttctgttacg cttgcgcgat
     2341 gtatttttga tttgagtaaa gtgatattca ttttaatcct tgtactaaaa aattatcaat
     2401 gagtcttgtt tttccaacaa aagcagccac cgctcctaaa acattatcag tgatattttc
     2461 gatattttcc atggtgttaa aatcgactaa ttctatataa tcgattttga ttagtttttc
     2521 tttttctaaa atatctttca tagcttggat gatcttagaa gtattttttt ctccctctcg
     2581 gactaatttt tcagccaaaa aaatgctttg agatatagct agtgacgctt ttctttcttc
     2641 tttgctaaga tatacatttc tagagctttt agctaagcca tcttcttctc taatgatagg
     2701 acaaatttga atttttaaat caaaatttaa atcatcaacc atatgcctaa cgactacgca
     2761 ttgctgcgcg tctttttgcc ccatatagac tatatcaggg tttaggatat taaaaaattt
     2821 agttaaaacc gtgcaaacgc ctctaaaatg ccccggtctt ttagccccgc aaagtttatc
     2881 agtgatcgta ttcatatcta cataggtgct aaaattctta agatacattt gagttgcatc
     2941 ggggataaaa accatatcaa cgccattatc ttgacacatt ttaatgtcgc gttctaaatc
     3001 tcttggataa ctagaaaaat cttcattagg cccaaattgc ataggattta caaagatact
     3061 tactataacc ttatcttgtg ttttggcatg tttgactaaa cttaaatgtc catcgtgtaa
     3121 aaaacccatg gttggaacat agcctatact aagttgatgt gatttccaat cttttacaat
     3181 ttgttttgct tctttgacag aagtaatgac ttgcatattt gtatccttag tataatttat
     3241 ctaataattc atcatctaaa taatcaaagc tgtgctcttg ggaaggaaaa ataccgcttt
     3301 taacttcatc tctatatttt tcaactccta cttgaggatc aattttatca aaatgcttta
     3361 caaattttgc tttaaaatct ttatttaaac ccaaaagatc gtgataaact aaaacttgtc
     3421 catcgcagta tttgcctgaa cctatgccga ttgttggaat ttctaaaata gagcttattt
     3481 tttgtgctag ttttacaggc acacattcta aaaccaacat acaagcaccc gcatcttgca
     3541 cagcttttgc atcatctata attttttggg ccgattgtaa atctttacct tgaaccctat
     3601 agccacctag catatttaca gcttgtgggg ttagtcctag gtgagcaacg acgggtattc
     3661 ctgattggga aatcaattta atcttacttg cgatttctat acccccttcc acttttaccc
     3721 catttgcgtg gctttctttg ataaatcttg aggcatttaa gatagcgtca cgatctgaac
     3781 tttgataaga cataaaaggc atatcagcaa gtacgaaaga ctttttagct ccgcgagaaa
     3841 cagctttggt aaaaatcaac atttcatcca tagtaacact taaagtatct tgcatgccaa
     3901 gcactgtcat agctaatgaa tctccaacca atataatatc tatatcgcta ttgtctaaaa
     3961 ttcttgcact atgataatca tacgcactta ccatggttat tttttcattt ttggcctttt
     4021 tttccaaaaa actaagaata ctttttctca tttaaaatac ctcgtttagc tataaaatag
     4081 taagcaaaaa actagcatat aaattttcat aaatagtaaa taaacgataa aacaa
//
LOCUS       DARGEY010000118         4103 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.118, whole genome shotgun sequence.
ACCESSION   DARGEY010000118 DARGEY010000000
VERSION     DARGEY010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4103)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4103)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4103
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.118"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..573
                     /locus_tag="SF008_001535"
     CDS             <1..573
                     /locus_tag="SF008_001535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233781.1"
                     /translation="VFKEQNLNEELKTNQKELLNYMHHFKRDSNFMQILGLDNAYLKA
                     LRDKTSIFGRKSENNLNYFYLASNSTTNLDEMNNFISIIDKYIIFINKIDTLPDTYTL
                     MKIAFNADYFLFNLVPFASSLDKNFICSIPQKEQLLENMINSYEKMDLLYKTKLKTEI
                     QEMIYPAIYATKKLNHFIDIAKGRLNACGK"
     gene            557..730
                     /locus_tag="SF008_001536"
     CDS             557..730
                     /locus_tag="SF008_001536"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233782.1"
                     /translation="MHVENNLSPEDRQGIENYLIILNTISFLGDLNIKYNNHNAKIKN
                     YSSGYCKYYCKIA"
     gene            746..1606
                     /locus_tag="SF008_001537"
     CDS             746..1606
                     /locus_tag="SF008_001537"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233783.1"
                     /translation="MKKLFYRLNFLFNTKLKKLTWIVAILFIGYKLLFYTEIKNGYVK
                     VTLRPIVTLNQEGYCIKEGRRLSQNELFERATKDWLEKLYNQAHDPLVMNADGDWLDI
                     TNCYYSSKEKAKKGLNCQFYSNGKQFGIDDIAKQINLNKSQEENMQKIMQGFSIVRPF
                     EEEKILTDDLELKYSLLLQDRLGDFTFMPYDIRFIVVGGDTGYYSKFGYSVFALMIQK
                     YFIGNDHDFKFKKGTVEYWKNKDNKNNHEYIYYPITNCGEVEMRYDFDPPGLYYQLFH
                     DMQWRDEWHR"
     gene            1594..3537
                     /locus_tag="SF008_001538"
     CDS             1594..3537
                     /locus_tag="SF008_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233784.1"
                     /translation="MASLNLKGDYGVEILSYYLWGQSTPPSDLARKDNRVLIGKDYQA
                     RNEKEIIIQASALDYMKYVDRYTNATNFGIFQNFFKSVFSEKELGEFKDKIENETYIL
                     ELDDIIKTKVYGGVNPFLDEDNKNKDKSTKDKENNEENKYEKYDENKMAVRIIHYYLD
                     TNSGNYAKRAFAFGSTSIAFNKDVKFHISAKTYEPVCISNLKLYPLKDNFDFESDSSL
                     AEFVNFFLEKELDPLKIGRTVNIHFIDQEKITPMVIYKRVFQILQNQSFNSLTPSITS
                     LREYYKTRILPSGVLYLQDDNTNSQTNLEQTILYNNTSFNKISKEPLNKSSSSAKKPC
                     FITLYLKDEHNKPIANAKIIIKGFKHDEALRVVNLKRRSDEKGKIKFDKEKYFSDCYS
                     FKVKLDESEAYFPTPLQNAKRIFNNYTHHKVGLILKFKAKGHLVYDGFNLYHYKGNEL
                     INSYMARSGTAKADNEKRSKKQIANYFYQDEKDTSKGKKAYFYYDDESIKDRFGTLPE
                     GEYYLKINEIAKDTNPSFLKDYPFEIGKTWGKCCVRLYTNKECSKTFKELKIKESNEK
                     ENKKSKKEQSIIKDNLYLYSINEKGEFGNNGSIGMAQAQLLEDLSKQVKFVQSEGENI
                     ISLKVAYPEKIDNKIIFVGKVYE"
     gene            3530..>4103
                     /locus_tag="SF008_001539"
     CDS             3530..>4103
                     /locus_tag="SF008_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233785.1"
                     /translation="MNKTLIFHENSHIDLNASFAPGTYIELQLEKESDKTLNWSYVEC
                     NSEKKMRSLLDVDCRSIEAKDLKFIASFKGNICGFHLPISRDNEPIKDIKDYKYYIIV
                     FAYDEKKAIPSLEDFHIVIDMSFRVGVGRDEDVKESKLRNDFNSDIIQTNCIFSVLEA
                     VEFLKACQSFKEKAKETNNYEFFKNYPQLAG"
BASE COUNT         1688 a          458 c          637 g         1320 t
ORIGIN      
        1 gtttttaaag agcaaaactt aaatgaagaa ttaaaaacaa atcaaaaaga attgttaaat
       61 tatatgcatc atttcaaaag agattctaat tttatgcaaa ttttaggttt ggataatgct
      121 tatcttaaag ctcttagaga taagacaagt atatttggaa gaaaaagtga aaataatctt
      181 aattattttt atcttgcttc taatagcact actaatttag atgaaatgaa taattttata
      241 agcattatag ataaatatat catttttatc aataaaatag atacattgcc tgacacttat
      301 acactcatga aaatagcctt taacgctgat tattttcttt ttaatctcgt cccatttgct
      361 tcaagcctag ataaaaactt tatttgctct ataccgcaaa aagaacaatt attagaaaat
      421 atgataaatt cttatgaaaa aatggattta ttatacaaaa caaaactaaa aaccgaaatt
      481 caagaaatga tatacccagc gatatatgca acaaaaaaac ttaatcattt catagatatt
      541 gccaaaggaa gattaaatgc atgtggaaaa taatttaagt cctgaagata gacaaggtat
      601 agaaaattac cttattattt taaatacgat aagttttcta ggcgatttga atataaaata
      661 taacaatcat aatgcaaaga ttaaaaatta ttctagtggt tattgtaagt attattgtaa
      721 aatagcttag attttaggat tataaatgaa aaaacttttt tatagactta attttttatt
      781 taatacaaaa ttaaaaaaat taacttggat tgtagctata ttatttatcg gatataaatt
      841 acttttttat accgaaatta aaaatggtta tgtaaaagtg actttacgtc ctatagtaac
      901 acttaatcaa gagggttatt gcataaaaga aggtagaaga ttaagccaaa atgaattatt
      961 tgaaagagct actaaagatt ggcttgaaaa actttataac caagcacatg atccactagt
     1021 tatgaatgca gatggagatt ggcttgatat cactaattgc tattattcaa gcaaagaaaa
     1081 agcaaagaaa ggtttaaatt gtcaatttta cagcaacggc aaacaatttg gtatcgatga
     1141 tattgcaaaa caaattaatc ttaataaaag ccaagaagaa aatatgcaaa aaataatgca
     1201 aggctttagc attgtaagac cttttgagga ggaaaaaatt ttaacagatg atttagagct
     1261 taaatattct ttactcttac aagataggtt aggtgatttt acttttatgc cttatgatat
     1321 tagatttatt gtcgttggtg gtgatactgg ttattattca aaatttggtt attctgtttt
     1381 tgctttaatg atacaaaaat attttattgg aaacgaccat gactttaaat ttaaaaaagg
     1441 cactgtagaa tattggaaaa ataaagataa taaaaacaat catgaataca tatattatcc
     1501 cattacaaat tgtggcgaag ttgaaatgcg ttatgacttt gatcctcctg gattatatta
     1561 tcaattattt catgatatgc aatggaggga tgaatggcat cgttaaattt aaaaggcgat
     1621 tatggagtag aaattttatc ctattatctt tgggggcaaa gcacaccgcc aagtgattta
     1681 gccagaaaag ataaccgtgt gcttataggt aaagattatc aagcaagaaa tgaaaaagaa
     1741 ataatcatac aagcttcagc acttgattat atgaaatatg tagatagata taccaatgct
     1801 acaaattttg ggatatttca aaattttttc aaaagtgttt ttagtgaaaa agaacttggg
     1861 gaatttaaag ataaaataga aaatgaaaca tatattttag aattagacga tatcataaaa
     1921 actaaggtat atggaggtgt aaatccgttt cttgatgaag ataataagaa taaagataaa
     1981 agcactaaag ataaagaaaa taatgaagaa aataaatacg aaaaatacga tgaaaataaa
     2041 atggcagtta gaataattca ttattattta gatacaaatt caggcaatta tgctaaaaga
     2101 gcttttgctt ttggaagcac aagtatagca tttaataaag atgtaaaatt tcatattagt
     2161 gctaaaactt atgaacctgt ttgtatttcc aatctaaaac tttatccttt aaaggataat
     2221 tttgattttg aaagtgatag cagtcttgca gaatttgtaa atttctttct agaaaaggaa
     2281 ttagatccct taaaaatagg tagaacggtt aatattcatt ttatagatca agaaaagatt
     2341 acacctatgg ttatttataa aagagtattt caaatacttc aaaaccaatc ttttaattct
     2401 ttaactcctt ctataacttc acttcgtgaa tattataaaa cccgtatcct gccatctggg
     2461 gtattatatt tgcaagatga caatacaaac tctcaaacca atttagaaca gactatcctc
     2521 tacaacaata caagttttaa caaaatttca aaagaaccct taaataaatc ctcatccagt
     2581 gctaaaaaac cttgctttat cactttatat ttaaaagatg aacacaataa acccattgct
     2641 aatgctaaaa tcattatcaa aggttttaaa catgatgaag ctttaagagt agttaatcta
     2701 aaaagacgca gtgatgaaaa gggtaaaata aaatttgata aagaaaagta ttttagtgat
     2761 tgttatagct ttaaagtaaa gcttgatgaa agtgaagctt attttcctac tcctttacaa
     2821 aatgctaaaa ggatatttaa taattatacc catcacaaag ttggactcat acttaaattt
     2881 aaagcaaaag gtcatttagt ttatgatgga tttaatctct atcattataa aggaaatgaa
     2941 ttaattaatt cttatatggc aagaagtggt actgctaagg cagataatga aaaaagaagt
     3001 aaaaagcaaa ttgcaaatta tttttaccaa gatgaaaaag atacaagtaa aggtaaaaaa
     3061 gcttattttt attatgatga tgaaagtatt aaagatagat ttggcacttt gcctgaagga
     3121 gaatattatt taaagattaa tgaaatagct aaagatacta accctagctt tttaaaagat
     3181 tatccctttg aaataggaaa aacttgggga aaatgttgtg taagattata taccaataaa
     3241 gaatgttcta aaacttttaa agaattaaaa ataaaagaaa gtaatgaaaa agaaaataaa
     3301 aaaagcaaaa aagaacaaag tataataaaa gataatctat atctttactc tatcaatgaa
     3361 aagggagaat ttggcaataa tggtagcata ggtatggcac aagcacagtt attagaggat
     3421 ttaagtaagc aggttaagtt tgtgcagagt gagggggaaa atataatctc actcaaagtg
     3481 gcttaccctg aaaaaataga taataaaatt atatttgtag gaaaagttta tgaataaaac
     3541 actaatattt catgaaaatt cccatattga tttaaatgct tcttttgcac cagggactta
     3601 tatagaattg caattagaaa aagaaagcga taaaacgcta aattggagtt atgtagagtg
     3661 caatagtgag aaaaaaatgc gatctttgtt ggatgttgat tgtcgttcta ttgaggctaa
     3721 agatcttaaa tttatagcga gttttaaagg taatatttgt ggatttcatt tacctataag
     3781 tagagataat gaaccaataa aagatataaa agattataaa tattacatca tagtctttgc
     3841 ttatgatgaa aaaaaggcta tacctagttt agaagatttt catatagtta tagatatgag
     3901 ctttagagta ggagttggaa gggatgagga tgtaaaagaa agcaaactaa ggaatgattt
     3961 taatagtgat ataattcaaa caaattgtat ttttagtgtt cttgaggctg tagagttttt
     4021 aaaagcttgc caaagtttta aagaaaaagc aaaagaaaca aataattatg aattttttaa
     4081 aaattatccc caacttgcag gaa
//
LOCUS       DARGEY010000119         4088 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.119, whole genome shotgun sequence.
ACCESSION   DARGEY010000119 DARGEY010000000
VERSION     DARGEY010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4088)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4088)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4088
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.119"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            374..939
                     /locus_tag="SF008_001540"
                     /pseudo
     CDS             374..939
                     /locus_tag="SF008_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851848.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
     gene            852..1307
                     /locus_tag="SF008_001541"
     CDS             852..1307
                     /locus_tag="SF008_001541"
                     /inference="COORDINATES: protein motif:HMM:NF021926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FIST C-terminal domain-containing protein"
                     /protein_id="HEG8233786.1"
                     /translation="MNAVEVLCNYFNCTFEELKNKMQEYTFALKIGEDYLISPMKINP
                     NKTLFSYCDIESAQELSLLKKTNFIEAIKKDYEKFSLNKPKPLGAIFNDCILRRLHNK
                     EHLNQIHFNNFPIVGFSSFGEIYGAGIAKSLVAIFFMKLKILMISNLDI"
     gene            complement(1508..1861)
                     /gene="rplT"
                     /locus_tag="SF008_001542"
     CDS             complement(1508..1861)
                     /gene="rplT"
                     /locus_tag="SF008_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEG8233787.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGIELDRKILADLAMND
                     AAAFAKIAEAAKKAL"
     gene            complement(1955..2146)
                     /gene="rpmI"
                     /locus_tag="SF008_001543"
     CDS             complement(1955..2146)
                     /gene="rpmI"
                     /locus_tag="SF008_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEG8233788.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRDLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            2305..3471
                     /locus_tag="SF008_001544"
     CDS             2305..3471
                     /locus_tag="SF008_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233789.1"
                     /translation="MTINSANPYQNLTLSNPLQNSSALNLIKDSKALDQKGNENSLEQ
                     LSYIFNNITYASEFGFRINEEGFFDKDLNKIANIPESYDINIKSVRSIAKELAKQDEN
                     LNYNKIDLPYLLNSYHSSLKSINSEFLQDDNAYLSRDLISKLSSGFSTDNGEFLGQIS
                     RIYNNQEEIDLALSNITNLNTLMLDNKITNFHFDKAIENTSSNEILKPYLTKNAEVSK
                     SGLLMNFIYHDIKTQNEKEFNFFMKPATLELSSHQNLQKILKGETDIEDYIKKENEKK
                     MSFDLYLYVNGVDKKTSTQDKLSVFFQQYINYQKDMDLREFANSSSIFQIYIDQNRND
                     FDALKKQYQNQSQDTQRLEEANQLRSSSIENFLDRRQKQANINKILNSYMSVMV"
     gene            complement(3481..>4088)
                     /gene="ung"
                     /locus_tag="SF008_001545"
     CDS             complement(3481..>4088)
                     /gene="ung"
                     /locus_tag="SF008_001545"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEG8233790.1"
                     /translation="LEIKKQYLNAINQNIVIYPPANLIFNAFNLCPLKEIKIIILGQD
                     PYHQPNQAMGLSFSVPKNVKIPPSLNNIFKELQNDLNITPAKSGDLSSWAKQGVLLLN
                     SILSVEANKAASHSSWGWQEFSDAIIHKLSNEKSGLVFMLWGNYAKNKEILIDNTKHL
                     ILKAAHPSPLARTGFLGCKHFSKANEFLKKVGKIPIDWKIV"
BASE COUNT         1553 a          589 c          533 g         1413 t
ORIGIN      
        1 tgccgaattt atggtgtctt gatttagtta actagtaatt aaaaaatagt tttaatggag
       61 ttaaattgat gtttttttaa ttttaaaaat aaaagctcaa caaaaaaaag aagaagtaaa
      121 aaagttttag aagctccata tcttcaataa aatgaacttg aagaaaaatt aaaaaaataa
      181 acatcaagcc aaaattaatt ataggctttg tgtcaatcaa cttaatctag cgatcatagg
      241 aaataagatt caaaattcta taaatgagca atgtgatatc atcttaagca gtgctactga
      301 tttattatgc aaccttgatt ctaactcaaa cattgaaaac agtccttata aacaaaatat
      361 ccaaggaata agcttgatac tttttagtga agatatgata gaaaatcttt gcacaaataa
      421 aatcaagctt tttagtgata taaaagatta tacagaaaga aaaaaactga tagaaaaaga
      481 agttttattt ataaatatac cttttgaagc acactgcata aatactttgc attatttaat
      541 ttatgatggt ttaagtcaaa gcgaaagttc tcttttagaa cttttgtaca aacacaaccc
      601 ctatccttgt gctttagtag ggggtgggtc tagcggaaac atggacttta gcggagcatt
      661 tatattttat aacggagaaa tattaaaaat caagctttaa gcatacatgt tcaatttaaa
      721 cctaaatacc gttttaattt aatgaagtct caaaatttca atcctcaaag caacattacc
      781 tttaccatac ttgatgtaag cttatatgat aaaaccgtac gcgaatttat taataaaaaa
      841 cctttcaatc catcaacgcg gttgaagttt tatgtaatta ttttaactgt acttttgaag
      901 aacttaaaaa taaaatgcaa gaatatactt ttgctttaaa aattggagaa gactatctta
      961 tttcccctat gaaaatcaac ccaaataaaa cattatttag ttattgtgat atagaaagcg
     1021 ctcaggaatt aagcttgctt aaaaaaacaa attttattga agctataaaa aaagattatg
     1081 aaaaattttc tcttaataaa ccaaaaccac taggagcaat ttttaatgat tgtatcttaa
     1141 gaagacttca caacaaagaa catttaaatc aaatccattt taataatttt cccatagttg
     1201 gtttttctag ttttggagaa atttatggag cgggaattgc aaaaagttta gtggcaatat
     1261 tttttatgaa gttgaaaatt ttaatgattt caaacctaga tatttaaaaa ctttcataca
     1321 aaaatacagt gattttaaat actattatct taatataaaa ggtcaaaaac tagaaatgac
     1381 aaatgagatt aataaaataa tcttaaatca actcaaatgt tatgaagatg ttctagctaa
     1441 attaaattaa tactaaaaaa ttaagaattt caagaatcaa aaatcttgaa attcttacac
     1501 taaaaaatta aagtgctttt tttgcagcct ctgcaatttt tgcaaaagca gcagcatcat
     1561 tcatagctaa atctgccaga atttttctat caagttcaat acctgctttt ttaagaccat
     1621 tgataaatct tgaataactt aaatcattga gtctgcaagc agcattgata cgcacaatcc
     1681 aaagacggcg gaagtctctt tttttacggc gtctatcacg ataagcatag actagacttc
     1741 tttctagttg ttcttttgct tttctaaaat gtttgcgtcg tccactataa aaaccacgcg
     1801 ctaattttaa aactttttta tgtctgcggc gtctaacaac acctgttttt actcttgcca
     1861 tttttatttc ctttcataaa gtggcgtcca aatttggagc ttgcccttga aattttatct
     1921 cagaggggag tttgaatgac ttttagtcaa aaacttaaat tcctagcatt ttttcaacag
     1981 cttttacatt tgtgctatgc acatatttag ctgtgcgaag atcacgcatt ctttttgcag
     2041 gttttttagt caaaatatga cttctaaaag ctgagcctct tttgatttta tttttaccta
     2101 ctttgaagcg tttaactgcg cttttaacgc ttttcatctt tggcatacgc tttccttatt
     2161 tagataaatt tttatttttc aaactttaaa agaaaagata aatactatca aattttttct
     2221 aatttttgac tgaatttaat ttttaaaaaa cttggcacgc attttgctta taaaaaaatc
     2281 agcaatattt tggaaagatt taaaatgact ataaattcgg caaatccata tcaaaattta
     2341 accttatcta atcctttgca gaatagctct gctctaaatt tgattaaaga tagcaaagcc
     2401 ttagatcaaa aaggaaatga aaatagctta gaacaattaa gttatatttt taataatatc
     2461 acttatgcta gtgaatttgg atttagaatc aatgaagaag gtttttttga taaagattta
     2521 aataaaattg caaatatacc agaatcttat gatatcaaca ttaaaagcgt tagaagcata
     2581 gcgaaagaac tcgcaaaaca agatgaaaat ttaaactaca ataaaattga tctaccttat
     2641 cttttaaata gctatcatag ttcattaaaa tctataaatt cagaattttt acaagatgat
     2701 aatgcttatt taagtcgcga tcttatttca aaactatcat caggtttttc aacagataat
     2761 ggagaatttt taggccaaat ttcaagaatt tacaacaatc aagaagaaat tgatttggca
     2821 ttaagtaata tcacaaattt aaatacttta atgttagata ataaaataac taattttcac
     2881 tttgataaag ccatagaaaa cacttcttct aatgaaattt taaaacctta tttaactaaa
     2941 aatgcagaag tatcaaaatc tggtctttta atgaatttta tctaccatga tataaaaact
     3001 caaaacgaaa aagaatttaa cttttttatg aaacctgcca ctttagaact aagctctcat
     3061 caaaatttac aaaaaattct caagggcgaa acagatatag aagattacat caaaaaagaa
     3121 aatgaaaaaa agatgagttt tgatctttat ctttatgtga atggcgtaga taaaaaaaca
     3181 agtactcaag ataaactatc tgtatttttt caacaatata ttaactacca aaaagatatg
     3241 gatttaagag aatttgcaaa ttcaagttca atatttcaaa tttatatcga tcaaaatcgc
     3301 aatgattttg atgctcttaa aaaacaatat caaaaccaaa gtcaagatac gcaaagatta
     3361 gaagaagcaa atcaactacg ttctagctct atagaaaatt ttttagatcg tcgtcaaaaa
     3421 caagcaaata taaataaaat tttaaactct tatatgtctg tgatggttta aaataatttt
     3481 ttaaactatt ttccaatcta taggaatttt accaactttt tttaaaaatt cattagcctt
     3541 tgaaaaatgc ttacaaccta aaaatcctgt tctagctaaa ggacttgggt gagctgcttt
     3601 taaaatcaaa tgcttagtat tatcaatcaa aatctccttg ttttttgcgt aatttcccca
     3661 aagcataaaa acaagccctg atttttcatt acttaattta tgtattatag catcactaaa
     3721 ttcttgccaa ccccacgaac tatggctagc tgctttattt gcttcaacgc taagaataga
     3781 atttaagagc aaaactcctt gttttgccca agagcttaaa tctccgcttt ttgctggagt
     3841 gatgtttaaa tcattttgca attctttaaa aatattatta agacttggtg ggatttttac
     3901 attttttgga accgaaaaac taagccccat tgcttgattt ggttgatgat aaggatcttg
     3961 tcctaggata ataattttaa tttcttttaa aggacataaa ttaaaagcat taaagattaa
     4021 atttgcaggc ggataaataa ctatattttg attaatcgca tttaggtatt gttttttgat
     4081 ttctagaa
//
LOCUS       DARGEY010000120         3864 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.120, whole genome shotgun sequence.
ACCESSION   DARGEY010000120 DARGEY010000000
VERSION     DARGEY010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3864)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3864)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3864
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.120"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..245
                     /locus_tag="SF008_001546"
     CDS             <1..245
                     /locus_tag="SF008_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233791.1"
                     /translation="SSQAFIVNNNQNTFEFWKEKFKNIKDFKIASKNSLFCDFSYNQL
                     SDLRKLKNFKYCLILENYDIFEQEFENKENQTPSLF"
     gene            complement(237..689)
                     /locus_tag="SF008_001547"
     CDS             complement(237..689)
                     /locus_tag="SF008_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEG8233792.1"
                     /translation="MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCSLLDLAK
                     YELDLYFTHKLRKFSIPVLIQGTDFESKVYKALMKIPYGKIATYKDIAEKINHPKAFR
                     AVGNANSKNQIPIFIPCHRVIANNGIGGYNGGLEIKRFLLENEGVNLK"
     gene            744..3290
                     /locus_tag="SF008_001548"
     CDS             744..3290
                     /locus_tag="SF008_001548"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HEG8233793.1"
                     /translation="MSFMQEYNKLVEERAALGIPPLPLNANQTRELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLDSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDAAEVLKNIIFVHDNFHTIAELSKNNPHAKEVLQSWANADWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQTGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIVMGSTIAPIFFNTAQD
                     SGALPIICDVTNLEMGDEFEIHPYDGKIIKNGSAIAEFTLSPNTLLDEVRAGGRIPLI
                     IGRGLCTKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     ITLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNIPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEAGYENK
                     ATLARRAEKMREWLKNPTLLRADKDAKYAYIIDINLNDIKEPILACPNDPDDVATLSE
                     ILADDKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLTN
                     EGYYSIFGAAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSDEHKANIYRYLNFNEIENFKLEN"
     gene            3350..>3864
                     /locus_tag="SF008_001549"
     CDS             3350..>3864
                     /locus_tag="SF008_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233794.1"
                     /translation="MKLLFASFCCFASLMASDAINCDNIKNNKTLLNESSNLDYLNIA
                     SSCKESLKNQDFTKKLYAISNEIRGSNSSCNGVTYLPKLQQFDFLLLKIAIDPIAYQK
                     TLDTPENLEKKYDILKSYFRYWAYQSIGNFRLYKAFWKEYNNAIEPLEKYFESNFNFD
                     KGSNIYYTSNA"
BASE COUNT         1419 a          579 c          673 g         1193 t
ORIGIN      
        1 caagctctca agcgtttatt gtaaacaaca accaaaatac ctttgaattc tggaaagaaa
       61 aatttaaaaa cataaaagac tttaaaattg cttctaaaaa ttctttattt tgcgattttt
      121 cctataatca gctttcagat ttaagaaaat taaaaaattt taaatattgt ttaattcttg
      181 aaaattatga tatttttgaa caagaatttg aaaacaaaga aaatcaaacc ccaagcttat
      241 tttaaattca ctccttcatt ttcaagcaaa aatcttttta tttcaagccc tccattatat
      301 cctcctatgc cattgtttgc aataactcta tgacaaggta taaaaatagg aatttgattt
      361 ttagaatttg catttccaac ggctctaaaa gcttttggat gattaatttt ttctgctata
      421 tctttataag tagctatttt gccataagga attttcatta aagccttata aacctttgat
      481 tcaaaatctg taccttgtat caaaacagga atgctaaatt ttctaagctt atgagtaaaa
      541 tataaatcaa gttcatattt tgctaagtca agcaaactac aatttttttc tgatctttta
      601 ttatcacaaa aatcgactct agttaaaaat tttccatcac tatgtaaaga taggtaacat
      661 aaaggcattt tataataaac tttaaacatt ttttatcctt caaagagcta caattataat
      721 aaaaaatatt taaggagtag aaaatgtctt ttatgcaaga atacaataaa cttgttgaag
      781 aaagagccgc tttgggtata ccaccccttc ctttaaatgc aaatcaaact agagaacttt
      841 gtaaattact tgaaaatgaa aataatgaag agcttgcaaa tcttttagaa aatagagtaa
      901 atcctggtgt tgatgatgca gctttagtaa aatgtgaatt tttagattcc atacttaaag
      961 gcaaaatcag tgctccaaat atagacaaaa aaagagcctt aagaatgctt ggaactatgc
     1021 taggcggata taatgttaaa gttttaatcg atgccttaaa agatgaaaac atagccaaag
     1081 atgctgcaga agtgttgaaa aatattattt ttgtacatga taatttccat accatagctg
     1141 aacttagtaa aaacaatcca cacgctaagg aagttttaca aagctgggca aatgcggact
     1201 ggtttaataa aaaagaaaaa ctaccacaag tgattaaatg tatagttttt aaagtagcag
     1261 gcgaaacaaa taccgatgat ctaagccctg caggagatgc ttttacaaga agcgatattc
     1321 ctttacatgc aaatgccatg ctaaaggtaa gacaaacagg atccttagaa aaaatcaaag
     1381 agcttaaaaa aagcggtcgc gaagtggttt atgtaggtga tgttgtagga acaggttcaa
     1441 gtagaaaatc ggcaataaat tccatacaat ggcacttagg aaaagaaata gaaggtgtgc
     1501 caaacaagca cagcggtggt atagtaatgg gttcaaccat agcaccgatt ttctttaaca
     1561 ctgctcaaga tagcggggct ttacctatca tctgtgatgt aacaaactta gaaatgggcg
     1621 atgagtttga aattcatcct tatgatggaa aaatcataaa aaatggctct gcaatcgcag
     1681 aatttacact cagtccaaac actctcttag atgaagttag agcaggagga agaatcccac
     1741 ttatcatagg tcgtgggctt tgtactaagg ctagagaatt tttaggaatg gaaagcgaaa
     1801 atatctttac caaacctgaa caacctaaat cttcaagcgg tggttatacc ttggctcaaa
     1861 aaatgctagg tcgtgcctgt ggagttgaag gtgtgcgtcc aggtatgtat atagaaccta
     1921 taactttaac cgtaggctct caagatacca caggtcctat gactagagat gaaattaaag
     1981 aacttgcaag cctaggtttt aatgcagact ttgttatgca aagcttttgc catacagctg
     2041 cgtatccaaa agtaagcgat tcaaatttac ataaaacctt gcccaatttc atgacaagtc
     2101 gtggtggggt aagtttaaaa ccaggtgatg gagttatcca ctcttggctt aatcgttttg
     2161 tattaccaga tactgtagga acaggcggag attctcatac acgctttcct ataggaattt
     2221 ctttccctgc aggaagtgga cttgtggctt ttgctgcggt tactggttct atgcctttaa
     2281 atatccctga aagtgtttta gtgcgtttta gcggggaatt acaagctgga gttaccttaa
     2341 gagatttggt taatgctata ccttattatg caatcaaaca aggacaactt accgttgaaa
     2401 agaaaaataa gaaaaatatt tttgcaggaa aaattttaga aatagaaggc ttgccaaact
     2461 taaaagtcga acaagctttt gaacttagtg atgcaagtgc tgaaagatct gcagctgctt
     2521 gcagtgtgga tttaagcata gaaagtgtaa gcgaatatat caaatccaat atttctttaa
     2581 ttgaagctat gatagaagca ggatatgaga ataaagctac ccttgctaga agggctgaaa
     2641 aaatgagaga atggcttaaa aaccctactc ttttaagagc agataaagat gcaaaatacg
     2701 cttatattat agatattaat cttaatgaca ttaaagagcc aatcctagct tgtccaaatg
     2761 accctgatga tgtggcaacc ttaagcgaaa ttttagccga tgataagcgt ccaaaaaata
     2821 tagatgaagt ttttgtaggt tcttgtatga caaacatagg acattataga gctttgggag
     2881 aaattttaaa agataaaggc atacttaaaa ccagactttg ggtagtgcct ccaacaaaaa
     2941 tggataaagc acaacttacc aatgaaggtt attacagcat ctttggcgca gcaggtgcta
     3001 gaatagaagt tcctggttgt tctttgtgta tgggtaatca agctagagta aatgatggag
     3061 ctgtagtttt ctcaacttct acaagaaatt ttgacaaccg tatgggaatg ggtgctaaag
     3121 tatatttagg cagtgcagaa cttgcggcag tttgtgcgat tttgggtaaa attccaagca
     3181 aggaagaata cttacaaatt gttagcgaaa aactaagtga tgagcataaa gcaaatatct
     3241 atagatattt aaattttaat gagattgaaa atttcaaact tgaaaattaa ttcaaattta
     3301 atacttattt ggattaaata acaaaattaa aattttcaaa ggaaaaatat tgaagttatt
     3361 attcgcttcc ttttgttgtt ttgcaagttt aatggctagt gatgccatta actgcgacaa
     3421 cattaaaaat aataaaacat tgctaaatga aagttcaaat ttagattatt taaatatagc
     3481 ttcaagctgt aaagaatctt taaaaaatca agattttaca aaaaaactct atgcaatttc
     3541 caatgaaatt cgcggaagca atagctcttg taatggtgtg acttatttgc caaaattaca
     3601 acaatttgat tttttattat taaaaatagc tatcgatccc atcgcttatc aaaaaacttt
     3661 agatacaccc gaaaatttag aaaaaaaata tgatatttta aaatcttatt ttagatattg
     3721 ggcatatcaa agtataggaa attttagact ttacaaagct ttttggaaag aatacaataa
     3781 cgctatagaa cctttagaaa aatattttga aagtaatttt aattttgata aaggtagtaa
     3841 tatttactat actagcaatg cctt
//
LOCUS       DARGEY010000121         3825 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.121, whole genome shotgun sequence.
ACCESSION   DARGEY010000121 DARGEY010000000
VERSION     DARGEY010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3825
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.121"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            139..553
                     /locus_tag="SF008_001550"
                     /pseudo
     CDS             139..553
                     /locus_tag="SF008_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853469.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            537..761
                     /locus_tag="SF008_001551"
     CDS             537..761
                     /locus_tag="SF008_001551"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233795.1"
                     /translation="MHFVISFNITSNLVGITLGLILAESISNYFGNWRDSLSFYAWIN
                     LILLILWLFVGKDENKKEEKRIMQKILFML"
     gene            782..1357
                     /locus_tag="SF008_001552"
     CDS             782..1357
                     /locus_tag="SF008_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011812753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233796.1"
                     /translation="MIIFYIGPILFLNSLFTFLPTFYAQYASFSKELADFAKKEIPAL
                     ANFAIIFGPYLGLFFKRKNISFKIMLLSGGACIFICGFCMLFLQNLVLIQIFAVLSGI
                     FYSMWFPFFFNLPSELKNSNPNQTAYIMSTFWSITFVILSFNLWVVSWSVDKTHSFTL
                     GFVYIFALIFISAILAQFVLPRRENFIQGEK"
     gene            1359..2510
                     /locus_tag="SF008_001553"
     CDS             1359..2510
                     /locus_tag="SF008_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG8233797.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELCTAKLVAQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHTTSLLLAAKYLASQNFNGTLNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLVVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIATIKMSVRALDNETRKLTEEKIYKICK
                     GLAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNHRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLALKYLK"
     gene            complement(2514..3254)
                     /gene="yaaA"
                     /locus_tag="SF008_001554"
     CDS             complement(2514..3254)
                     /gene="yaaA"
                     /locus_tag="SF008_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEG8233798.1"
                     /translation="MKILFSPSESKNENCTKNPIDENSFIFKELFPYRMEALKHYGEF
                     IKNASLKNLQELFGIKNENEIDKFKHDLKQAPTQEAILLYTGVSYEYLNFKALDKKSQ
                     AYILENTLIFSNLFGVVRANDTLPFYKFKQGAKIGNFAIEKFYKEHFSKALDEYLENK
                     EILDLRAGFYDKFYTPKKKFYTYKFVKNGKVISHFAKAYRGILLSISAKNQVKNNKEL
                     LANLPSNLKLKEIQIKGLKEEIVLEILD"
     gene            complement(3347..>3825)
                     /locus_tag="SF008_001555"
     CDS             complement(3347..>3825)
                     /locus_tag="SF008_001555"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233799.1"
                     /translation="DSKGIKFNTQTLAMDEQAINELLNIANYEQASNFSNTIQKYIIL
                     NNFKIDSTLKTEGVFSSYITTAKENLQTLKTQSQNEEQALIFDKALAILNNITQNDDY
                     KLNLDLKFKNIPVSDYSTQGIDSIEKLSINNQDATEALKIILPFIMFSMLMGGASF"
BASE COUNT         1231 a          448 c          644 g         1502 t
ORIGIN      
        1 taaacttata tataaatttt caaaaagtaa caaaaaaata tataaaaaaa ataattaaat
       61 taaaaaaata attaaagata ataaatatct tattttttta tgtttatatt ttaataaata
      121 tctaaaaagg attttaatat ggaaaaatca cttttatttc attttagacg cattggagtt
      181 gaatttatca tttttagtgt ttatgctgtt tttagtatct cttgggcagc aacagggtct
      241 ttaatgcctt tgatttcaaa tgatcttgcc ctaaatactc agcaagctac tttaatcact
      301 agtatgatag tagttgcgaa aatttttggt gcttcattta ctgctttttt ggtttataaa
      361 ttcggattaa aaaagggata ttttttaggc tgtattttaa tgagttcggg tatcttttta
      421 agttttatag atagttatag tggtattttg attataagat ttttaacagg gcttggttca
      481 gcttgtgctt tagtttgctt agtgcctatt gcacagcaat ggtttgaaaa aaagctttgc
      541 attttgtaat tagttttaat ataacttcaa atttagtagg cattactcta ggacttattt
      601 tagctgaaag catctcaaat tattttggaa attggagaga ttctttatca ttttatgctt
      661 ggattaattt gattttattg attttgtggc tttttgtagg taaagatgag aataaaaaag
      721 aagaaaaaag aataatgcaa aagatcttat ttatgcttta aaatctcgtg ttgcttgggg
      781 tatgattatt ttttacatag ggcctatttt atttttaaat tctcttttta cttttttacc
      841 aactttttat gcacaatatg cgagttttag taaagaatta gctgattttg ctaaaaaaga
      901 aattccagcc ttggctaatt ttgctattat ttttggtcct tatcttggat tattttttaa
      961 aagaaaaaat atctctttta aaataatgct attgtctgga ggagcgtgta tttttatatg
     1021 cggattttgt atgttgtttt tacaaaattt agtattgata cagatttttg ctgtgttatc
     1081 aggcattttt tattctatgt ggtttccatt tttctttaat ctaccttcag aattaaaaaa
     1141 ttccaaccca aatcaaactg cttatattat gagtactttt tggagtatta cctttgttat
     1201 actatcattt aacctatggg tagtatcttg gagtgttgat aaaacccata gttttacttt
     1261 gggttttgtt tatatttttg ctttgatttt tatttcagcg atcttagcac aatttgtttt
     1321 acctagaaga gaaaatttta tacaaggaga aaaatagaat gaatttaatt ccagaaatac
     1381 tagacttaca aggcgaattt gaaaaaattc gtcatcaaat tcatgaaaat cctgagcttg
     1441 gttttgatga attatgtact gcaaaattag tggcgcaaaa attaaaagaa tttggttatg
     1501 aggtttatga ggaaatagga aaaacaggcg ttgtgggggt tttaaaaaag gggaatagcg
     1561 ataaaaaaat aggacttcgt gcagatatgg atgctttgcc tttgcaagaa tgcacaaatt
     1621 tgccttataa aagcaaaaaa gaaaatgtaa tgcatgcttg cggtcatgat ggacatacta
     1681 cttctttatt gcttgctgca aagtatttag caagtcagaa ttttaatggc actttaaatc
     1741 tttattttca acctgctgaa gagggtttgg gtggtgctaa ggcaatgata gaagatggat
     1801 tgtttgaaaa atttgatagt gattatgttt ttggatggca caatatgcct tttggtagcg
     1861 ataagaaatt ttatcttaaa aaaggtgcga tgatggcttc ttcggatagt tatagcattg
     1921 aagttattgg aagaggtggt catggaagtg ctccagaaaa ggcaaaagat cctatttatg
     1981 ctgcttcttt acttgttgtg gctttacaaa gcatagtatc tcgcaatgtt gatccccaaa
     2041 attcagcagt tgtaagcata ggagctttta atgcaggaca tgcttttaat atcattccag
     2101 atattgcaac gattaaaatg agtgttagag cattagataa tgaaactaga aagctaactg
     2161 aagaaaaaat ttataaaatt tgtaaaggtc ttgcacaggc taatgatata gagattaaaa
     2221 tcaataaaaa tgttgttgca ccagtgacta tgaataacga tgaagctgtg gattttgcta
     2281 gtgaggttgc aaaagaatta tttggcgaaa aaaattgtga atttaatcat cgtcctttaa
     2341 tggcaagtga ggattttgga tttttttgcg aaatgaaaaa atgtgcctat gcttttttag
     2401 aaaatgaaaa cgacatttat ttacataatt ctagttatgt ttttaatgat aagcttttag
     2461 ctagggctgc aagttattat gcgaagctag ctttaaaata cttaaaataa aaactaatct
     2521 agaatttcaa gcacaatttc ttcctttaaa cctttgattt gaatttcttt gagttttagg
     2581 tttgaaggaa ggtttgctaa aagctcttta ttgtttttta cttggttttt tgcacttatg
     2641 gagagtaaaa ttcccctata agctttagca aaatgactga tgactttacc attttttaca
     2701 aatttataag tataaaattt cttttttggg gtgtagaatt tatcataaaa tcctgctcta
     2761 aggtcaagta tttctttatt ttctaagtat tcatctaagg ctttactaaa atgttcttta
     2821 taaaatttct ctatggcaaa atttcctatt ttagcccctt gcttgaattt ataaaaaggt
     2881 agggtatcat tagctcttac aacgccaaaa agattagaaa atataagagt attttctaaa
     2941 atataagctt gacttttttt atctaaagct ttaaaattaa gatattcata acttacccca
     3001 gtataaagca atatagcttc ttgagtggga gcttgtttta agtcgtgttt aaatttatca
     3061 atttcatttt cgtttttaat gccaaaaagt tcttgtaaat tttttaaact tgcatttttg
     3121 ataaattctc cataatgctt taaagcttcc attctataag gaaataattc tttaaatata
     3181 aatgagtttt catcgatggg attttttgta caattttcat ttttgctttc actaggggag
     3241 aataaaattt tcattttagc cttttttgtt aatgttatga aaacattaag agcaaagaaa
     3301 tttaatcttg cttttaatgt ttttgaagtt tttatcattt taaaatttaa aatgacgctc
     3361 cgcccattaa catagaaaac atgataaatg gaagtataat ttttaacgct tctgtggcat
     3421 cttgattgtt gatgcttagt ttttctatgc tgtcgattcc ctgtgtgcta tagtcactaa
     3481 cagggatgtt tttaaatttt aaatcaagat tgagtttata atcatcattt tgagtgatat
     3541 tgtttaaaat agctaaagct ttatcaaaga ttaatgcttg ttcttcattt tgactttgag
     3601 tttttaaggt ttgtaaattt tccttagcag ttgttatata gctactaaat acgccttcgg
     3661 ttttaagagt tgaatcaatt ttaaaattgt ttaaaatgat gtatttttgg attgtattgc
     3721 taaaatttga agcttgttcg tagtttgcta tattaagaag ttcattgata gcttgttcat
     3781 ccatagctaa agtttgagtg ttaaatttta tacccttaga atcaa
//
LOCUS       DARGEY010000122         3814 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.122, whole genome shotgun sequence.
ACCESSION   DARGEY010000122 DARGEY010000000
VERSION     DARGEY010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3814
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.122"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..597)
                     /locus_tag="SF008_001556"
     CDS             complement(<1..597)
                     /locus_tag="SF008_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HEG8233800.1"
                     /translation="MDLKSLENNRLYILKRLGILKFLSIIEALLVGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLAQKELQINALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILSANKNPSFENEEQIYIK
                     LQDKNFTLNHVFSKENHYLIATLSNPFFIDIKKDLESNF"
     gene            complement(597..2405)
                     /gene="typA"
                     /locus_tag="SF008_001557"
     CDS             complement(597..2405)
                     /gene="typA"
                     /locus_tag="SF008_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEG8233801.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTNDNPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS"
     gene            2540..2863
                     /locus_tag="SF008_001558"
     CDS             2540..2863
                     /locus_tag="SF008_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233802.1"
                     /translation="MSKPLNEEIFIEFKSDLAERKNEVLLQVLELLETFRSDENEKMA
                     RISSELTEILENEENLEKILNAKNLEELLNILTALNEDKMIKVYEDSYLKEKFPNVMV
                     DKFLK"
     gene            2879..>3814
                     /locus_tag="SF008_001559"
     CDS             2879..>3814
                     /locus_tag="SF008_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG8233803.1"
                     /translation="MMSNLAPQNDVLNLTPSKTSTTSSSFSKTSKNKEHESSDSKNST
                     QDDTESFLNSLLNSINETNEFLPDHMKISQKEVVNEAMSRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTT
                     HTTSTHSMQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDAKNT
                     LKNIKNDEFAKNLTEELNIKDQKNQDNLNKESKDLN"
BASE COUNT         1311 a          647 c          558 g         1298 t
ORIGIN      
        1 gaaattgctt tctaaatctt tttttatatc tataaagaaa ggattgctta aagtagcaat
       61 aagataatga ttttctttag aaaaaacatg atttaaagtg aaatttttat cttgaagttt
      121 gatataaatt tgctcttcat tttcaaagct aggatttttg tttgcactta aaatttcgag
      181 caaaattccg caaaaaaagc gtttattttc gtccaaaaac tgaatatcat aaattttaaa
      241 atccttaaat tcaaagcagt tttgactttt aaattctttc aaatcctttg taagtcctaa
      301 ttttaaaaag tctttttggc ttaaactttg ctttttaaat tttgccccaa aacgacgtaa
      361 aaataaattt aaagcattaa tttgtaattc tttttgtgcg agttttagtt ttttggctgt
      421 aaaacgaaag aaaaaaacac ctacaaaaac agctaaaatt actgcgatta aggcatctct
      481 tataaaaaca aaggctaaaa aacctacaag taaggcttcg ataatgctta ggaattttaa
      541 gattcctaag cgtttaagta tataaagtct attattttct aagcttttta aatccattaa
      601 gattttgctt tttccattct ttttctttga gttgggtcaa gatagcgttt gcgaacacgc
      661 acatttacag gtgtaacttc tacaagttca tcttcttcta tccactctaa agctctttca
      721 agacttaatt ttctaggtgg cacaagtttg attgcatcat cgcttccact tgctcttaca
      781 ttggtaagat tctttccttt gataggatta acatctaaat catttggacg agagtgctca
      841 cctataatca taccggtata aactttagtt tgaggctcta tgaaaagtac tccacgctct
      901 tgaaggttaa acaaagaata ccctaaagcc acgccatttt ccatagaaat taacgctcca
      961 ttattacgct tttcaaccgc accgctaaaa ggacggaatt ctaaaaagct atgattcatc
     1021 acgccttcgc ctttggtatc agttaaaaac tgacttctaa aacctataag tccgcgtgct
     1081 ggaatttcaa actcaagcct tgtttgtcca tcgcccgttg gtgccatggt tttcatttca
     1141 gcttttcttt tgccaagttt ttctattacc gcaccgctaa attcttcagg cacatcgata
     1201 actaaatgtt caaaaggttc tgttttaact ccatcttcaa cctttacgat aacttcaggt
     1261 cttcccatac aaaactcaaa accttcacga cgcatatttt cagctaaaat agtgatttga
     1321 agttcgcccc taccgcttac tttaaatttg ccttcgcctg tgctttcgta tttcatagcg
     1381 atattagttt tcatttcagc ttctaagcgt tcagcgattt tatttgaagt tacatgtttt
     1441 ccttcagttc ctgctaatgg gccatcattt acagaaaata ctatacttaa agtcggctct
     1501 tcaatgtgca aaggatcaag tggcatagga ttgtttggat ctacaacgct atcacccaca
     1561 tctaaagctt caaaacctgc tatagctacg atatctccac ttcctgcttc ttcaatatcc
     1621 attttttcta agcccataaa gccaatgagt tttgaaattc taccatttac tttggtgcca
     1681 tcagcttttg caagcattac gctttggttt ttcttcacaa ccccattgaa aattctagca
     1741 atgcctattt tacctacaaa attatcatac cctaaagtga aaacttgaag ttgtaaagga
     1801 ttgtcatttg tgccacttgg tgctggaacg cgttcaagta tggttttaaa aagtggctcc
     1861 atattatcac tttcatcgtt tagatcaagc ttagcataac cattttttgc tgcagcataa
     1921 actatggcaa agtcaagttg ctcatcgttt gcatctaggg ctacaaaaag atcaaaaatt
     1981 tcattgatca ctctttcagg atcagcagct ggtttgtcga ttttgttgat tacaactata
     2041 ggtttaagcc ctaaagataa agctttttta accacgaatt tagtttgtgg cataacgcct
     2101 tcttgagcat ccaccaaaag caaaactcca tcaatcattt ttaaaacgcg ttctacttct
     2161 ccgccaaaat cagcatgccc tggagtatct atgatgttga tttttgtacc tttgtaattg
     2221 atcgctgtgt tttttgaaag tatggtaatg ccacgttctt tttctatatc gttgctatcc
     2281 ataacgcgtt ctgaaatttg ttctctttcg ctaaaggtgc ctgattgttt taataattca
     2341 tctaccatag tggttttacc atggtcaacg tgagctataa ctgctatatt tctaatgttt
     2401 tccaaatttt cttctccaaa gctaaatttt taaaagctta gattatacaa aaatttaact
     2461 taaactacaa agcatcaaaa cttggaacac ttcttgcttt aaagacttgt gaaattaaaa
     2521 ttttaaaaag gaagttaaaa tgtcaaaacc attaaatgaa gagattttta ttgaatttaa
     2581 aagcgattta gctgagagaa aaaatgaagt tttgcttcaa gttttagagc ttttagaaac
     2641 ttttagatca gatgaaaacg aaaaaatggc aagaatttca agtgagctta cagaaatttt
     2701 agaaaatgaa gaaaatttag agaaaatttt aaatgctaaa aatttagaag agcttttaaa
     2761 tatcttaact gctttaaatg aagataagat gattaaagta tatgaagatt cttatttgaa
     2821 agaaaaattt cctaatgtaa tggtagataa atttttaaaa taattttttg aaggaaaagt
     2881 gatgtcaaat ttagctccgc aaaatgatgt tttaaatctt acgccgagta aaacttctac
     2941 tactagcagt tcttttagta aaactagtaa aaataaagaa catgaaagta gtgatagtaa
     3001 aaattcaact caagatgata cggaaagttt tttaaattct ttgcttaatt ctatcaatga
     3061 aaccaatgaa tttttacctg atcatatgaa gatcagtcaa aaagaagttg ttaatgaagc
     3121 gatgagcaga cttcaaaaag gagcttttga tgagagcgat aagataagca ttttcgaatc
     3181 tgcttctttt atgcaaattc tttctttgtt agataagcta aaaacagata cagcagatgt
     3241 taaactagca aatctttcta ctcaactttc aagtcttatt aaaacagagg ctaattttaa
     3301 tgctttaaaa ggtgcatcaa atcttagtga gcttttggac atagctaaag atctgggctt
     3361 aaatgtaaaa aatattaaag tagatcgtct tcttgatctt aaagcaactt ttccaaattt
     3421 agataaggct gattttttta agggtgctgt ggataatgtt tttaaagaaa tcatcaataa
     3481 taaaatttcc aatgtgagta aaaatttaaa tcacaattta gaaaatacaa ctcatactac
     3541 aagcactcat tctatgcaaa aaacaaattc taaagatagc ggttctttgc tttctcaaac
     3601 tttaaaaaat ttagattcca tactttcatc caaagaaagc aaacacgaaa aaaacgataa
     3661 agttaaatca aaaatagaag aagataccac agatgctaaa aatactttaa aaaatatcaa
     3721 aaatgatgag tttgcaaaaa atttaacaga agagttaaat ataaaagatc aaaaaaacca
     3781 agataattta aataaagaaa gcaaagactt aaac
//
LOCUS       DARGEY010000123         3698 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.123, whole genome shotgun sequence.
ACCESSION   DARGEY010000123 DARGEY010000000
VERSION     DARGEY010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3698
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.123"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            2..868
                     /locus_tag="SF008_001560"
     CDS             2..868
                     /locus_tag="SF008_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEG8233804.1"
                     /translation="MEIFLDLLNTQSPTHTANNFSITQPNVSIVIKNLENKFDGILFE
                     RLGKKLLPTPKALELGKNWLKIIQAYYQSLEKLNDESMLLGEIKIASTQSISEHFLAP
                     ILFDFKAEFKNIEIRSQTQNSKECLNLLKNGNIEFAIIEAELDPALVEYENLEINFWQ
                     DDELIVATSDKKLNEKEFYIDELLEQKWILREVGSGLRDKFLNEIGASSKKLNIFLEL
                     DRMAAIKELVLQKKAISIFSKKSIEKELKNSTLYEIKLKNIDLKRKFYTLKRKNYNFN
                     RALEKFEKIFKS"
     gene            948..2816
                     /gene="rpoD"
                     /locus_tag="SF008_001561"
     CDS             948..2816
                     /gene="rpoD"
                     /locus_tag="SF008_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEG8233805.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTTKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(2832..3344)
                     /locus_tag="SF008_001562"
     CDS             complement(2832..3344)
                     /locus_tag="SF008_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEG8233806.1"
                     /translation="MKKIYIIRHAKASKSEDIDDFERKLTKSGKEDLKKLFKNLASHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNRICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPSLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(3341..>3698)
                     /locus_tag="SF008_001563"
     CDS             complement(3341..>3698)
                     /locus_tag="SF008_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEG8233807.1"
                     /translation="NMIVLFQFGRMLETYLGALCFIFIYFIGGLLCSLLSVFYVYFDF
                     KYFGENINVIGASGAICVLMGFYAVIDKNSTKGLIVAILLMSFVPLLMGVNVAWYGHI
                     FGFMCGYILAKIKEVK"
BASE COUNT         1580 a          539 c          534 g         1045 t
ORIGIN      
        1 tatggaaata tttttagatc ttttaaacac tcaaagtcca actcatacag ccaacaattt
       61 ttccataact caacctaatg tttcaatagt aattaaaaat ttagaaaata aatttgatgg
      121 cattttattt gaaagacttg gaaaaaaact cttacctaca ccaaaagctt tagaactagg
      181 aaaaaattgg ttaaaaatta tacaagccta ctaccaaagc ttagaaaaat taaacgacga
      241 aagtatgctc ttaggggaaa taaaaatagc ctcaactcaa agcatttctg aacatttttt
      301 agctcctatt ttatttgatt ttaaggcaga atttaaaaac atagaaattc gctctcaaac
      361 gcagaattca aaagaatgtt taaatttact aaaaaacgga aatatagaat ttgcaatcat
      421 tgaagcagaa cttgatccag ctttagtgga gtatgaaaat ttagaaataa atttttggca
      481 agatgatgaa cttatagtag ctacaagtga taaaaaactc aatgaaaaag aattttatat
      541 cgatgaactt ttggaacaaa agtggatttt aagagaagta ggctcaggct taagggataa
      601 atttttaaac gaaattggtg caagctcaaa aaaacttaat atttttcttg aacttgatag
      661 aatggctgcg attaaagaac ttgttttaca aaaaaaagca atctctattt tttccaaaaa
      721 aagcatagaa aaagaattaa aaaattcaac actttatgaa attaaattaa aaaatatcga
      781 cctaaagcgt aaattttata ccttaaaaag aaaaaattat aattttaaca gagctttaga
      841 aaaatttgaa aaaatattca aatcataaac ataataaccg atttatatag aaagttaagc
      901 aatttttaga taaaatccaa agcttatata aatttcaagg ataatcaatg aacgccaaaa
      961 ctcaagaagc tgaattagaa gaattatttc aagaaaatgc aaaagattat atcacatatg
     1021 aaaaattggt aaaatatctt acaaaacaac caagtgcatc aaccactaaa aaagtgcaag
     1081 cattaatgaa aaaacacaaa gtgcaacttt tttcagcagc tgaaattgca caaatgaaaa
     1141 acatagaaga tgcaaaaaga cttcaagaag aaaaacaaaa actccaagat acaagccttg
     1201 agaacgaatt tgatttagcc aatgaaaacg atttattaga atggagcaga tcagactctc
     1261 ctgttcgtat gtatttaaga gaaatgggac aaattgcttt attaaacaaa gatgaagaaa
     1321 ttgaaatttc caaaaaaata gaacttggcg aagatattat cattgatgct ttttgttctg
     1381 taccttattt gatagatttt attttagatt ataaagaacc tttaataaac agagaaagaa
     1441 gggtaaaaga actatttaaa agctttgacg atgaagaaaa aagtgatgat aaacttgatg
     1501 aacttgatat agatgaagat gaagaaaacg aaacagaatt agaatcagat gaagaaaata
     1561 ctaaaaaaaa cagcaaaaaa gaagatgaaa gaactttaaa agttatagaa aaatttaaag
     1621 ctctagaaaa agctaaaaaa gattggctaa aaacatccaa agacaaagaa agcggagatg
     1681 aacttttaga taaattaagc attgcgttca aaaaaaatat tttaaaagaa aaattaatgg
     1741 atctaggccc tacttcaaaa cttattagcg aaatcgtaaa atcaatggaa actgcactaa
     1801 aaagtgatga agaatttgac aaagaactta agcgtttaga ataccgctta cctatgtttt
     1861 ctgatgaact taaaaaacgc catgcagata ttttaaaaga tattacaaaa ttgagcaaag
     1921 aagaaatcac agagcgagct ttagaaacaa ccatggtaag cacttatatg gaaattaaaa
     1981 aactatttca aactaaagaa gccagtgaaa aaagctttga tcttgaaaaa tcacgcttaa
     2041 aagaaatttt ggagcaaatt aaacgcggta aaaaaatctc tgatgaagca aaaggaagaa
     2101 tggcaaaatc aaacttgcgc cttgttgtaa gcatagctaa acgctacaca aatcgtggtc
     2161 tgcctttctt agaccttatc caagaaggaa atataggttt gatgaaagct gtggataaat
     2221 ttgaatacaa aaggggttat aaattttcca cttatgcaac ttggtggatc aggcaagcta
     2281 tttcaagggc tatagctgat caagcaagaa ccataagaat tccaatccat atgatagaaa
     2341 ccatcaatca aattaataaa attatccgcg aacatctaca aaaagatgga aaagaacctg
     2401 atgtcagtgt tatagctaaa gaagtaggtt taagcgtaga taaggttaaa caagttatta
     2461 aaatcacaaa agaaccaatt tctcttgaag ctccaatagg aaatgaagat gatggtaaat
     2521 ttggagattt tgttgaagat agaaattcac tttctccaat ggatcatatc ttaaaggatg
     2581 atttaaaaga acaaattgat gaagttttag atcaattaaa cgatagagaa aaagcggtaa
     2641 ttcgtatgcg ttttggttta atggatgatg aaagtgatag aactttagag gaaattggaa
     2701 aggaacttaa tgtcactcga gaaagagtga gacaaataga aagctcagct ataaaaaaac
     2761 tcaaacaccc taaagtagga agaaaactaa aaaattatat agaaggttgg aagtaagagt
     2821 caatctcctt actaaaaacc cagatctttt tcttctttta acttgcgtac atgttcaaaa
     2881 aaaactaatt ttccgctatg tttttttaaa tttttaaatt ccttaatatc aaattctaaa
     2941 cacaagatag aagaagttgg aaaagaagct aaacatagcg aacttaacaa ctctccaagc
     3001 tccattaaac taggattatg acccactaaa aatacttcat taaactcatc atcaatatct
     3061 tgcagaattt ttagcaaatt ttcaacattg caaagataca atctttcatc aaaacaaatt
     3121 ctatttttat caaaattata aaatttggct atttttttcg ctgttttagc ggttctaaca
     3181 gcaggacttg atagcaccaa atcaggatga atttcatgcg aagcaagatt tttaaaaagt
     3241 ttttttaaat cttcctttcc actcttagta agttttcttt caaaatcatc gatgtcttca
     3301 ctcttacttg cttttgcatg tcttataata taaatttttt tcattttacc tcttttattt
     3361 tagctaaaat ataaccacac ataaacccga aaatatgacc ataccaagca acatttaccc
     3421 ccataagcaa tggcacaaaa ctcataagta aaattgccac tataagtcct tttgtgctat
     3481 ttttatcaat aacagcataa aagcccatta aaacacaaat tgcaccacta gcgcctatga
     3541 catttatatt ttctccaaaa tatttaaaat caaaatacac ataaaaaaca cttaaaagtg
     3601 agcacaacaa tccgccaata aaataaataa aaataaaaca caaagcaccc aaataagttt
     3661 ctaacatacg cccaaattga aacaaaacta tcatattt
//
LOCUS       DARGEY010000124         3601 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.124, whole genome shotgun sequence.
ACCESSION   DARGEY010000124 DARGEY010000000
VERSION     DARGEY010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3601)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3601)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3601
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.124"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..102)
                     /gene="rrf"
                     /locus_tag="SF008_001564"
     rRNA            complement(<1..102)
                     /gene="rrf"
                     /locus_tag="SF008_001564"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(358..3264)
                     /locus_tag="SF008_001565"
     rRNA            complement(358..3264)
                     /locus_tag="SF008_001565"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          913 a          913 c          652 g         1123 t
ORIGIN      
        1 actttccccc tgccagtaag gcgtagtatc atcacccacg atgtgcttag cttcttggtt
       61 cgggatggag caaggcgttt ccacatctgt ataatcacgg acattgttat ttaaatattc
      121 tttgaaagat tgaatttaag aataaaactt aatcttttat ttctttactt ttttctttat
      181 tctctttctt cttttcttat cttttatctt tgataagttt ttatatagaa tacttaaaaa
      241 acaatgttaa gagcaagttc taatacaaac tctacttgaa agatttctat taaactctaa
      301 atattatcta tatttaaagt attcttaaaa accttaacaa ggaagtgatg ctttattaaa
      361 gataagccaa acgctctatt agtactggtc agctaaagga ctttcatcca ttacacaccc
      421 agcctatcaa actagtagtc ttctagagag cttagagaag attcatctta gagttggctt
      481 cacgcttaga tgctttcagc gtttatcctt tccaaactta gctacgctgc gatgctcttg
      541 gcagaacaac agctacacca gtggtttgtt caacccggtc ctctcgtact agggtcaaat
      601 ctcttcaatc ttcttacgcc cacggcagat agggaccgaa ctgtctcacg acgttctgaa
      661 cccagctcgc gtaccgcttt aaatggcgaa cagccatacc cttgggacct gctccagccc
      721 caggatgcga tgagccgaca tcgaggtgcc aaacctcccc gtcgatgtga gctcttgggg
      781 gagatcagcc tgttatcccc ggggtacctt ttatcctttg agcgatggcc cttccacaca
      841 gaaccaccgg atcactaaga ccgactttcg tctctgcttg acttgtatgt cttgcagtta
      901 agctggctta tacctttata ctctacgaac gatttccaac cgttctgagc caacctttgt
      961 aagcctccgt tattatttgg gaggcgaccg ccccagtcaa actacccacc agacattgtc
     1021 ccacttgagg ataactcaag ctggttagct acccaaataa gaaagagtgg tatctcaaca
     1081 atggctcata tacaactggc gtcatatact caaagcctcc cacctatcct gcacattctt
     1141 atccaagtag cagtgtcaag ctgtagtaaa ggtccacggg gtctttccgt cttgccgcgg
     1201 gtaggaggaa ttttcacctc cactacaatt tcactggatc cctctttgag acagctccca
     1261 tctcgttacg ccattcatgc aggtcggtat ttaaccgaca aggaatttcg ctaccttagg
     1321 accgttatag ttacggccgc cgtttactcg ggcttcgatc aagagcttcg ctaatgctaa
     1381 ccccatcaat taaccttcga gcaccgggca ggcgtcacac cctatacatc ctcttacgag
     1441 ttagcagagt gctgtgtttt tggtaaacag tcgggaggga ctctttgttg taagtttctt
     1501 cgctttcgga gtaaatccta gtacgaagct aaccacacct tataccgaag atacggtgct
     1561 attttgcaga gttccttaaa gagagttctt ccacgcgcct tagaatactc atcccaccca
     1621 cctgtgtcgg tttacggtac gggcaacatt agctaaactt agaaactttt cttggctcga
     1681 cggcatcagg ggttcttcta tccatccgaa gacttcaaaa agcctttcag ttctcggagt
     1741 attgttatac ggatttgcct gtacaacctc ctacgacctt agactagcac ttccatccgc
     1801 tagccccctt agccctaagc gtccttccat cgcacactaa tgttggtatt ggaatattaa
     1861 ccaatttgcc atcgtctacc cctttcggac tcgacttagg acccgactaa ccctacgatg
     1921 acgagcatcg cgtaggaaac cttgggttta cggcgttaat gattctcaca ttaattatcg
     1981 ctactcatgc ctgcatgctc acttctattc gctccagcac tccttaccgg tataccttcg
     2041 acgcaaatag aacgctctcc taccacttag taaactaagt ctacagcttc ggtacttact
     2101 ttagccccgt tatattttcc gcgcaaaatc actagaccag tgagctatta cgctttcttt
     2161 aaaggatggc tgcttctaag ccaacctcct ggttgtttaa gtaacttcac atcgttttcc
     2221 acttaagtaa gatttaggga ccttagctgg tagtctgggt tgtttccctc ttgacgacgg
     2281 attttatcac tcgccgcctg actgctgtga ttacatataa ggtattcgga gtttgatagg
     2341 gtttggtaca ttggtgtatg ccctagccca ttcagtgctc taccccctta tattacgaca
     2401 caacgctata cctaaatata tttcggagag aaccagctat cacgaagttt gattggcctt
     2461 tcacccctat ccacaagtca tcccggggct tttcaacgcc tatgggttca gtcctccact
     2521 agttcttaca ctagcttcaa cttgctcatg gatagatcac ttcgtttcgg gtctgcagca
     2581 tctgactaag cgccctattc agactcgctt tcgctacggc ttcgcgtttg cttaaccttg
     2641 ccagacacca caactcgcag gctcattatg caaaaggcag tccatcaccc tgtattccta
     2701 catagggctc tgaatgattg taagcaaatg gtttcaggtt ctatttcact ctgatcacct
     2761 cagttctttt cacctttccc tcacggtact tgtgcactat cgatctggta ttagtattta
     2821 gggttggatc gtggtcgacc cggattcaga caggattcct cgtgtcccgc cctactcagg
     2881 atactgctag ctaagctttg tttttcgcat acgggactat caccctctat ggctatactt
     2941 tccagaatgt tctgctaaac tcagctcttg cacattgcag tcctacaacc cccagtgcaa
     3001 gcactgggtt tgccctcttg cgctttcgct cgccgctact gacgcaatct ctattgattt
     3061 cttttcctga gggtactaag atgtttcaat tcccctcgtt cgctcctata taggtaatgt
     3121 atatctctat acattgggtt gccccattcg gaaatctacg gatcaaagct tcttgacagc
     3181 tccccgtagc ttatcgcagt ctagtacgtc cttcatcgcc tttaccagtc aaggcatcca
     3241 ccattcgctc ttagtagctt acctttttta ccttttatta ttgattctaa aacgcatcac
     3301 ttccttgtta aagtttttat gataagactt ctttatctta agacggaaag cattcaaaca
     3361 cttaatataa aactaaatga tttagtctca actaagcagt gagtttgaaa cttgtcttta
     3421 atttataatc cttaaatcta atattctctt tattcataga agagaagaca gctaaaagtt
     3481 aagttaaact aaagaaaaga taaataggtt ttatccttta acaagtcctg taaaattgtt
     3541 tttattaaaa cttgcttgtg actcttaaca atgataatta aaaagaacat ttaggtttaa
     3601 a
//
LOCUS       DARGEY010000125         3559 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.125, whole genome shotgun sequence.
ACCESSION   DARGEY010000125 DARGEY010000000
VERSION     DARGEY010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3559)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3559)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3559
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.125"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..684
                     /locus_tag="SF008_001566"
     CDS             <1..684
                     /locus_tag="SF008_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8233808.1"
                     /translation="YKDISPLAKIMSNKNYSVSYIQDFIFSNNPSQDNLTIALQAALL
                     NQREKEILELLIRFGARIDEGYESAIFYALENYENTNFLIQNGANVNQANAFGKTPLF
                     YAIEFNRLDIIKLLLDNGANVNQKYINNNEKLALSANIGSNTPYFITFCALEHTSKNV
                     LMHAAAYGNVEILKLLISKGANFNTVDDLGFNALDFALAAGKKENADYLKSLGLKANE
                     NLFYGGSLE"
     gene            681..1430
                     /locus_tag="SF008_001567"
     CDS             681..1430
                     /locus_tag="SF008_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEG8233809.1"
                     /translation="MKTAFITGASSGFGRACVEAFMQEGYKVIALARRKERLEELKNA
                     HKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MVDTNIKGFLYVAKAVIPTLRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            1427..3160
                     /locus_tag="SF008_001568"
     CDS             1427..3160
                     /locus_tag="SF008_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HEG8233810.1"
                     /translation="MNKFLVLLFLPLVAFANSSEAAANANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFAGVLSGTFLLSLSANIFKAQHLTFVNYYNTAVESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFATRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISDISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVRARTTGQIAP
                     LPKSGALNTAELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASANPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGLSVWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            3157..>3559
                     /locus_tag="SF008_001569"
     CDS             3157..>3559
                     /locus_tag="SF008_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HEG8233811.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTR
                     AELSFYHENDTLFYAMFDPKSKKKYIIEYLDFADEKICAFMPKLLEYLHQDNKLKEKL
                     FGVEFLTTKQELSVTLLYHKNIEDIKSNLENL"
BASE COUNT         1162 a          544 c          609 g         1244 t
ORIGIN      
        1 tacaaagaca ttagtccttt agcaaaaatc atgtcaaata aaaattattc agtatcttat
       61 atacaagatt ttattttttc aaataatcca agccaagata atcttactat agccttgcaa
      121 gcagcgcttc taaatcaaag agaaaaagaa attttagaac ttttgattcg ttttggtgct
      181 aggattgacg aaggttatga aagtgctatt ttttacgcat tggaaaatta tgaaaataca
      241 aactttttaa tccaaaatgg agcaaatgtt aatcaagcca atgcctttgg taaaaccccg
      301 cttttttatg ccatagagtt taatcgtctt gatatcataa aactacttct tgataatgga
      361 gcaaatgtta atcaaaaata tattaataac aatgaaaaat tagcattaag tgcgaacata
      421 ggttcaaata cgccttattt tattacattt tgtgctctag agcacacttc aaaaaatgtt
      481 ttaatgcatg ctgcggccta tggaaatgtt gaaattttaa aacttcttat ttcaaaagga
      541 gcaaatttta atactgttga tgatcttggt tttaatgcac ttgactttgc gctagcagca
      601 ggtaaaaaag aaaatgctga ttatctaaaa agcttaggtt taaaagcaaa cgaaaatcta
      661 ttttacggag gtagtttaga atgaaaaccg catttattac aggagctagt tcaggttttg
      721 gtagagcttg cgttgaagct tttatgcaag aaggctacaa agtaatcgcc cttgctagac
      781 gcaaagagcg tctagaagag ttaaaaaatg ctcacaaaga taagatttac acgctttgca
      841 tagatgtaag aaatcaaaaa gaaatctttg aggctattga aaatttaccc aaagaatttc
      901 aagaaattga tgtgcttttt aataatgcag gtttagcttt aggggtagat gaatttgata
      961 aattaaacct tgaagatatt aacactatgg tagatacaaa catcaaagga tttttatatg
     1021 ttgcaaaagc tgttattcct acacttcgca aacaaaaaaa tgcttatatt tttaacttag
     1081 gttcggttgc aggaagaaat ccttattttg gaggcaatgt atattgtgga accaaagcct
     1141 ttgtaggaca attttcattg gccttaagaa atgatcttag aggaagcaat atcaaagtaa
     1201 caaacattgc tccaggactt tgcaaaactg aatttagtga agtgcgtttt aaaggagata
     1261 tccaaaaagc tgatgcagtg tatgaaaata cgcaatttat cagtgctaat gatattgcca
     1321 aagtggtaat gtctatcatt aacctaccaa gtcatattaa tgttaatgaa atcgagctta
     1381 tgcctgtcac acaaacttgg aatggatttt atatagaaag agatgaatga ataaattttt
     1441 agttttattg tttttacctt tagttgcatt tgcaaactcc tcagaagcag ctgcaaatgc
     1501 taatttattt ggagctttta cacttatacc gcctttagtt gctattgctt tagcctttat
     1561 cacaaaagat gttattttgt cactctttgc tggagtttta agtggaactt ttctgctcag
     1621 tctttctgca aatattttta aagcacaaca tttaactttt gtaaattatt acaataccgc
     1681 agtagaatct ttttcaaaga ttatttctta tatcttaggt tcaacttcag atccagtaaa
     1741 tgcaggaatc attttacaaa ttctttgcat aggtggtctt gtggcactca tcacaaaaat
     1801 gggtggtgca aaagctgtag cattaaaatt tgccacaaga gccaaatcag ctgtatcagc
     1861 tcaagttaac acttggtttt tagggctttt aatatttttt gatgattatg ctaatttact
     1921 gatcgtaggt ccaattatgc gtcctttggc agataaattt aaaatttctc gtgaaaaatt
     1981 tgcctttatt atcgactcta ccgcagctcc tgtagcagga atagctgtaa tttctacttg
     2041 gataggctta gaagtttctt taattaaaac cgcttatgaa cacataggca ttagcgatat
     2101 tagtgctttt ggaatttttg tcgaaaccat accttatcgt ttttataata tcttcatgct
     2161 tttttttgta gtcatgactg caatcatggg acgtgagttt ggttctatgt acaaggctga
     2221 agtgcgtgca agaaccacag gacaaattgc acctctacct aaatcaggcg cactaaatac
     2281 tgctgaatta gaagatcagt ttttagcgcc aaaagaaggt attaaaattc gtgcttttga
     2341 tgctattgtt cctattttta ctttaatcat tttagctata ttaggatttt attttaatgg
     2401 acttagcact ttagaaggcg aagaacttgc aaaagcaagt gctaatcctt tgtcttttga
     2461 aacttttagg gctgcttttg gaaatgctga ttcttctgtg gtattattcc aagctgcttt
     2521 gtttgctgct attgtagcga tttttatcgg agttcgtcgt aaaattttca atcttaaaga
     2581 agcggtagaa acttggatat atggctggaa aaccatgatt tttactatag tcttactttt
     2641 atttgcttgg tcgctttcaa gtatagtaaa agatctaggg acttctttat ttatcactag
     2701 tttgcttgca gataaattgc ctgagtttat tttgcctgct actatttttg cttttgcttc
     2761 agctatttct tttgccatag gaacaagcta tggaactatg gggattttaa tgcctttggc
     2821 tgtgccttta gctcatgaaa tcgccaaaat caatggtatg gatgcaaatg ctatgcatca
     2881 ttatatggtc attaatataa gctgcgtttt aacaggtgcg atttttggaa accattgctc
     2941 accaatttca gataatgtaa tcctttcatc catgagtgca aaatgcgatc atatggagca
     3001 tgtaagaaca caaattcctt atgctttatt tatctgtggt atttctttaa tcgctggata
     3061 tattcctgta tctttaggac ttagcgtttg gtttgtcttg cctttaaatt tcatacttat
     3121 tgcgctttta ctaagactca tcggaaagaa agttccatga gtcttgaaaa ttttggaaat
     3181 tttctcactt tagatgaaaa acactctttc ataaaaaaat attttaaaga attttataca
     3241 aaggatttta aactttttac ttcaaaagat aagcattatc gtacaagagc tgaactttca
     3301 ttttaccatg aaaacgatac gcttttttat gcaatgtttg atccaaaaag caaaaaaaaa
     3361 tacattatag aatatttaga ttttgctgat gaaaaaattt gtgcttttat gccaaaactt
     3421 ctagaatact tgcatcaaga taataaatta aaagaaaaac tttttggcgt ggagttttta
     3481 accacaaagc aagaacttag cgtaacctta ctctatcata aaaatataga ggatataaag
     3541 tcaaatttag aaaatttaa
//
LOCUS       DARGEY010000126         3490 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.126, whole genome shotgun sequence.
ACCESSION   DARGEY010000126 DARGEY010000000
VERSION     DARGEY010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3490)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3490)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3490
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.126"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..173
                     /locus_tag="SF008_001570"
     CDS             <1..173
                     /locus_tag="SF008_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEG8233812.1"
                     /translation="YAKIDFLIKKLDISRQSASKYLKICENLGVLECIKMGRSNYYIN
                     IELLRLFRKGIF"
     gene            174..1658
                     /locus_tag="SF008_001571"
     CDS             174..1658
                     /locus_tag="SF008_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEG8233813.1"
                     /translation="MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNL
                     KDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKN
                     FKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISFNKEDEVFALGEVYEK
                     LLKDMGSDGGNSGEFYTPRPLIKTMVEVIDPKPKERIYDPSCGSCGFLVESFLHILYK
                     DRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK
                     KITDITEKDKYEVILANPPFGGKEKEQIQENFPIKSNATELLFLQHILKSLKNNGRCA
                     IIVPEGVLFQNSNAFVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKC
                     ICEGDGVYYYELIPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY
                     DLSAKNPNVKEEKILRTSEEILNSLEENLKTQQKYLNELKSILK"
     gene            complement(1736..2491)
                     /locus_tag="SF008_001572"
     CDS             complement(1736..2491)
                     /locus_tag="SF008_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEG8233814.1"
                     /translation="MQLRQKAREIFEKLLGGAKKDQLFASDKEYFINHINFTFGESFI
                     KANLDTQKYFLIALASTLAVGGKIEFKALLQGAIKNDISPIVIKEVIYQATPYVGFSR
                     VCDFLSLCNKVFEKLNIALVLTPQGTTTQENRKIKGREIQNAIFSEANITKMIETTPE
                     DKAFINDFLSANCFGDYYTRMGLDLKTRELLTLVYLISLGGLDNQVKAHIQGNLNMGQ
                     SRKDLLNIIAALIPYIGYPKALNALNLLDDIKK"
     gene            complement(2598..3017)
                     /locus_tag="SF008_001573"
     CDS             complement(2598..3017)
                     /locus_tag="SF008_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEG8233815.1"
                     /translation="MQELEKAGIHGSFKGDSKFFSKNVKVSMMFKSNEWRNFSGALVE
                     FEASARSAWHTHPQGQTLIVTEGEIITKVPGQKAFIAKKGDVISCPIGVKHFHGATNT
                     SSGAHIALTGEKEGKNVEWLELASDEEYENALKEARG"
     gene            complement(3075..>3490)
                     /locus_tag="SF008_001574"
     CDS             complement(3075..>3490)
                     /locus_tag="SF008_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8233816.1"
                     /translation="FSNIIGNYIAGKTLVKNANFTLILTPLIMIGFYILLFSFYSEII
                     LIIFAFILGILAGVMNNGTHFMISYPFPKAANFSNGLFISVANIGLSTGTAICGLVIS
                     LSDTRYIIVNTIVLLILGIIMIFVRSRIEKMKLRF"
BASE COUNT         1259 a          510 c          522 g         1199 t
ORIGIN      
        1 cttatgcaaa gatagatttt ttaataaaaa aattagacat ttcaagacaa agtgcttcaa
       61 aatatcttaa aatttgtgaa aatttagggg tattagagtg tattaaaatg ggtagaagta
      121 attattatat aaatatagaa cttttaagac tttttagaaa aggaattttt taaatgcaaa
      181 ataaaatcga taaaatcaca gatattctaa gaagagatga tggcataagt ggtgctatgc
      241 actatacaga gcagattggc tggatacttt ttttaaaatt tttagatgat tatgagacaa
      301 atttaaaaga tttagcgttt ttagatggca aagattataa aagcattttg caagaaaaat
      361 ttagctggag tgtttgggca gcgcctaaaa aagatggcaa acttgatgta aaaaatgctt
      421 taagtggatc agatttgctt gaattcgtaa ataaagagct ttttccttat cttaaaaatt
      481 ttaaaaataa tgatgatttt aaaagtatag agtataaaat cggtggaatt tttgaattta
      541 tagacaatcg catagcaaat ggacatactt taagagaagt gataaatatc attgatgaga
      601 ttagttttaa taaagaagat gaagtatttg ccttaggtga agtttatgaa aaacttctaa
      661 aagatatggg tagcgatggt ggaaatagtg gagaatttta cacccctcgt cctttgataa
      721 agactatggt ggaagtaata gatcctaaac caaaagaaag aatttatgat ccttcttgtg
      781 gtagttgtgg atttttagtt gagagttttt tacatatttt atataaagac agaaccaaag
      841 gcaaaaaagc aaatttaagc gtagaagagc ttgaattttt aaaaaatgat gctctttttg
      901 gtaaagaaaa aactccgctt agctatgcaa tgggcgttat gaatatgata cttcatgaaa
      961 tttcaagtcc aaatatcata aaaacaaata ctttaagtaa aaaaataaca gatataacag
     1021 aaaaagataa atacgaagta atacttgcaa atccaccttt tggtggcaaa gaaaaagaac
     1081 aaattcaaga aaattttcct ataaaatcaa atgctactga acttttattt ttacagcaca
     1141 ttttaaaatc tttaaaaaac aacggaagat gtgcgatcat tgtgcctgaa ggtgtgcttt
     1201 ttcaaaattc aaatgccttt gtgagtgtaa aaaaagattt actagatgat tttaatttag
     1261 aatgcgtttt gagtttgcca agtggggtat ttttgcctta tagtgctgtt aagactaatg
     1321 tgcttttttt ctctaaaggt aaaaaatgta tttgtgaagg cgatggagtt tattactacg
     1381 aacttatacc gccttataaa cttactaaaa ataagccttt agaatacgca cattttaaag
     1441 aatttctaaa atgctacaaa gaaagaaaaa tcactgctaa ttcttggctt gttagcaaaa
     1501 aagagcttga agaaagaaac tatgatctaa gtgctaaaaa tccaaatgta aaagaagaaa
     1561 aaatcctaag aactagcgaa gagattttaa attctttaga agaaaatcta aaaacacaac
     1621 aaaaatattt aaatgagctt aaaagcatac taaaatgatt gcaagttttt tgataaaaac
     1681 taatttacaa ataacttcta agctcaattt acaataaata tttattgctt gcattctact
     1741 ttttaatatc atcaagcaaa tttagggcat ttaaagcttt tggataaccg atatatggaa
     1801 taagagctgc aatgatattt agcaaatctt ttctactttg ccccatgtta agattgcctt
     1861 gtatgtgagc ttttacttga ttgtctagcc caccaagtga gataagatat acaagggtta
     1921 aaagctctct agtttttaga tcaagtccca tgcgtgtata gtagtctcca aaacaattcg
     1981 cactcaaaaa atcatttata aaagctttat cttctggtgt agtttctatc attttagtga
     2041 tattggcttc actaaaaata gcattttgta tttccctgcc ttttattttg cgattttctt
     2101 gcgtagtagt gccttgtgga gttaaaacta aggcgatatt tagtttttca aatactttat
     2161 tacaaagact taaaaaatca catactctag aaaaacccac ataaggcgta gcttgataaa
     2221 tcacttcttt aatgacaata ggacttatat cgttcttgat tgcaccttga agtaaagctt
     2281 taaactctat ttttccacct actgctaaag tagaagcaag ggcgattaaa aaatattttt
     2341 gtgtatccaa atttgctttt ataaaactct cgccaaaagt aaaatttatg tgattgataa
     2401 aatactcctt atcacttgca aaaagttgat ccttttttgc tcctcctaag agtttttcaa
     2461 aaatttctct tgctttttgt cttaattgca tggttttatc ctttgtggtt tttaaaattt
     2521 gtgaaaaaag agcatttaaa atactccaaa aacataaaag tttttataaa atttttgtgt
     2581 tttatttaca aatttcttta tcctcttgct tcttttaagg cattttcata ttcttcatcg
     2641 cttgcaagct caagccattc tacattttta ccttcttttt cgcctgtaag tgctatgtgt
     2701 gctccactac ttgtattagt tgcaccatga aaatgcttta ctcctatagg acagcttatc
     2761 acatcgcctt ttttagctat aaaggctttt tgccctggaa cttttgtgat gatttcaccc
     2821 tctgttacga ttaaggtttg tccttgagga tgagtatgcc acgcacttct agcactggct
     2881 tcaaattcaa ccaaagcccc gctaaaattt ctccactcat ttgatttaaa catcatagaa
     2941 acttttacat ttttgctaaa aaatttacta tcacctttaa aacttccatg aattcctgct
     3001 ttttctaatt cttgtatttt acctcctttt ttagtattat aaaacatgag agctactcta
     3061 agtcaagtaa aaatttaaaa tcttaatttc attttttcta tcctacttct tacaaaaatc
     3121 atgataattc ctaaaatcaa caaaacaata gtatttacga taatataacg cgtatcactc
     3181 aaagaaatca caagtccaca aatagcagtt ccggtgctta atcctatatt ggccacgctt
     3241 ataaaaagtc cattgctaaa attagcagcc tttggaaagg gataacttat cataaaatgc
     3301 gtgccgttat tcatcacacc tgctaaaatt cctaatataa aggcaaatat tataagtata
     3361 atttcactat aaaaactaaa aagtaaaata taaaatccta tcataattaa aggtgttaaa
     3421 atcaaagtaa aatttgcgtt tttaacaagg gtctttccgg ctatataatt gcctataata
     3481 tttgaaaaac
//
LOCUS       DARGEY010000127         3485 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.127, whole genome shotgun sequence.
ACCESSION   DARGEY010000127 DARGEY010000000
VERSION     DARGEY010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3485
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.127"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1066
                     /locus_tag="SF008_001575"
     CDS             <1..1066
                     /locus_tag="SF008_001575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233817.1"
                     /translation="CQRLWHDNPSDAKELKDLTFRSSTSQDFIDTIPNETMKTIVKEI
                     LPRVEMQQLKTDNTKSRDKARFYAELDWDSFYMKFPIMQELKGEYMNLKKLFGEESDF
                     QKQFEDFLNDTLLDIKNIKNTQEYTMALNIQAMKENKTKNAEVFKLYKKEETLPETHK
                     AIKDLQKPSDIIDNSLYFQRFDIKNDVFLPHLDLSKFDAFSLQNSIQHEKEVLDKFHS
                     NPKYKQNFALYSIAGAFNILYIPSLIQITRVTRFYNYHSLYAACKKVRAFIIDTVNFN
                     NNGSDQPIGAWDYEKVGFDLYNSIMQYRNTKFHFKYTSPKSFLFPLYNSDFLKTKQYF
                     NLGLDFFLYSSIFLDIVLEE"
     gene            1117..1367
                     /locus_tag="SF008_001576"
                     /pseudo
     CDS             1117..1367
                     /locus_tag="SF008_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910301.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1417..2424
                     /locus_tag="SF008_001577"
                     /pseudo
     CDS             1417..2424
                     /locus_tag="SF008_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902830.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
     gene            2919..3239
                     /locus_tag="SF008_001578"
     CDS             2919..3239
                     /locus_tag="SF008_001578"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233818.1"
                     /translation="MHKIGNVAIVSLSSADKKGGSYTFTNKVSMQDFGENLYLDTEAN
                     GYEKQIKNSRENLYITNLKAYKEKEQQNTTDKIPYNETIFIRAYLNNEENFSSMRQLN
                     GHIV"
BASE COUNT         1433 a          478 c          506 g         1068 t
ORIGIN      
        1 ctgtcaaaga ttatggcatg ataatccaag tgatgctaaa gaattaaaag atttaacctt
       61 tagaagctct acttcacaag attttataga tactatccct aatgaaacaa tgaaaacaat
      121 agtaaaggag atattgccta gagtagagat gcaacaatta aagactgaca acacaaaatc
      181 aagagataaa gcaagatttt atgcggaatt agattgggat agtttttata tgaagtttcc
      241 tataatgcaa gagctaaagg gcgagtatat gaatctcaaa aagctttttg gagaagaatc
      301 tgattttcaa aaacaattcg aagattttct taatgatact ttactagata taaaaaacat
      361 taaaaataca caagaatata caatggcact caatatccaa gcaatgaaag agaataagac
      421 gaagaatgca gaagtcttta agctatataa aaaagaggaa acactcccag aaactcataa
      481 agctataaaa gacttacaaa aaccatcaga tattatcgat aatagtttat attttcaaag
      541 gtttgatata aaaaatgatg tgtttttacc gcatttagac ttaagtaaat ttgatgcatt
      601 ttcattgcaa aactccatac aacatgaaaa agaagtttta gataaattcc actctaaccc
      661 aaaatacaag cagaattttg ctctatactc tatcgcaggg gcttttaata tcttatatat
      721 accaagcctt atacaaatca cgagagttac aagattctat aattaccatt ctttatatgc
      781 tgcgtgcaaa aaggtgcgtg cttttatcat tgatactgtg aattttaata ataatggtag
      841 cgatcagcct attggggcat gggattatga gaaggtagga tttgatttat ataattcgat
      901 aatgcaatac cgaaatacaa aatttcattt taaatatacc tcaccaaaat cattcttatt
      961 tcccttatat aattcagact ttctaaaaac aaaacagtat tttaatctag gcttagattt
     1021 ctttttatat agctctatat ttttagatat tgtgctagag gagtagttat tatgtttgaa
     1081 gcgacaaaaa atacagagta aattaaagga gttcttatgc aaaagttttt aatagtttta
     1141 aggatttgtg ttactttaag tattaatatt aatgctcaat ctccagaaga agctaaacct
     1201 agctttaatt gtgctaaagc aaaaagcaag gttgaaaaga tgatttgtag tgataaaagt
     1261 ggggagttac aaaaacttga tagattatat tctaaactct atttttcaat actaaagagt
     1321 atccctaaag atacaaaaag gggcaaaaaa caagagaaaa actgaaatat tttaatcatc
     1381 ctgttatgag taatagaaat atatttcaat gctattttgc aaaataatat aaaaatctac
     1441 aaccaaaatc ctgaaaatat caaccaaaaa cttaatgaaa atatggtttt tgagcttgca
     1501 gataatgaag caaaagaagt taaaaaaatc atttcttttg agaaaataca taatctaaga
     1561 aaaaaacttc aaaaatggaa tgcaaactat cttacttctt ttagtaagac agaattaacc
     1621 aatccacaag agtttattcc cttattgtct atttattatc agcgtccagc aagatttaac
     1681 ccagagagtg gactcatctt gcttcaaaaa gtccttaaag ataagaatag atttttagtg
     1741 tggtttctgt gcgttattat gctgatatac gacaattcaa aaacccttat tattctcgca
     1801 gaatccaaga atctaacttt agagaagcca ataccaagca aggactgaag ctgccagata
     1861 aatacactta tctttctttt atgcaaactt ataagaaatg caaagaagtt gatgaaaaaa
     1921 acagagtatc tcttaagaga atacaataca tattatacta aagacaaaca ctattattct
     1981 tatgttgcta aagaagaatt tcagggtata gctgatattc tcgctcccta tcttaattac
     2041 ctaaacaccc tcactcaaaa aaattttagc ttagataata tttattgtat tgctaattat
     2101 tgtgagaatt taggcgctaa taaattggat aatgttgcct tgcttaataa aactttaaga
     2161 caaaagtttg aaaaactaga agcaaataca ccccataata ttcttatcct ctatccaaat
     2221 cccactccat ctattataca aatagaacaa cctaaaaata cttttattac tttacttata
     2281 ggagcaaaag caaaaataga ttgcactaaa ttgatagaag atcaatgcga gctaatgtat
     2341 ttaaaatatg atccaacgca agaagaacaa caaacaagta atccgcaagc tttttcttgt
     2401 agcacccaag aagaacttat ttaaaaaaaa gaaaatgaaa tatactttaa agcagtaaaa
     2461 aacaatatat catattttat taataaaaac gatgggattt taaaagttgc tcttgctggt
     2521 aatgaagaaa atgctataga attatacagt tttgctaaag aaaatcaatt taaaattttg
     2581 caagataaaa cctcaaagat gctaaaaatc tatttaaaac tagaaagata tagtagcgaa
     2641 gagattttat cgcatagagg gggaattttg aattaacact taataatctt aagattttag
     2701 atgaaaatgg aaacaattat gaaaccatca ctaaagtatt tcttcataat tgtgagaata
     2761 gaaggattta tgaaagttta aagttagaac atcaagaagg catttataag agcagtttca
     2821 agattgattt aattttagat acaaactctt ctttttttaa aagggctaca aaatgtatta
     2881 tagctacaaa aaccttagaa ggctttagca caagtcaaat gcataaaatt ggaaatgtgg
     2941 caatagtctc tttaagttct gcagataaga aaggtggaag ctatactttt acaaataagg
     3001 taagcatgca agattttgga gaaaatcttt atttagatac tgaggcaaat gggtatgaaa
     3061 aacaaataaa aaattcaaga gagaatttat atatcacaaa tttgaaagct tataaagaaa
     3121 aagaacagca aaatactact gataaaatcc cttacaatga aactattttt attagagcct
     3181 acttaaataa tgaggagaat ttttcttcga tgagacaatt aaatgggcat attgtataaa
     3241 aaaagaagag gaattagaat gtaatcaatc taaaattaaa attttagaaa atcttcaagg
     3301 aaatgatata acctttaata cttctatgct ttcacaagat gataggaata aactttataa
     3361 tatgaatgaa aaatatcaat taatcttatt tgcttatttt agtgcacctg catttaaaac
     3421 aacacaagga ataacgcatt tagtgttaaa atgactaaag atttaaacta tacaaaacaa
     3481 agcca
//
LOCUS       DARGEY010000128         3471 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.128, whole genome shotgun sequence.
ACCESSION   DARGEY010000128 DARGEY010000000
VERSION     DARGEY010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3471)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3471)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3471
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.128"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..496
                     /locus_tag="SF008_001579"
     CDS             <1..496
                     /locus_tag="SF008_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HEG8233819.1"
                     /translation="IFWLIILKIQGKKSIKILFEAPYGVLLFSFGLYMVVFALHKIGV
                     SEILVKSYAFLMQDKSGIFGVALISAFGSSVFNNLPMVLIGDLALKEYFENFSFDSLM
                     IYAHLLGVNIGPKLTPIGSLATLLWLGVLARKGINISFWQYCKFGFLITLPVLVFSLF
                     ALIV"
     gene            587..1090
                     /gene="petA"
                     /locus_tag="SF008_001580"
     CDS             587..1090
                     /gene="petA"
                     /locus_tag="SF008_001580"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HEG8233820.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGVFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            1092..2342
                     /locus_tag="SF008_001581"
     CDS             1092..2342
                     /locus_tag="SF008_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HEG8233821.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFVTGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWVGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            2339..3463
                     /locus_tag="SF008_001582"
     CDS             2339..3463
                     /locus_tag="SF008_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8233822.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDFAVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFAK
                     GDAKKGKEFFENNCFACHGVKEDGIAANITDSSMGVIPPDLSAAGAIFDEKFLAALIM
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQKAALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVILSIFAIGWKRSVWSKLH"
BASE COUNT         1052 a          446 c          710 g         1263 t
ORIGIN      
        1 aattttttgg cttattattt taaaaattca aggtaaaaaa agtattaaaa ttctttttga
       61 agcaccttat ggagttttgc tttttagttt tgggctttat atggtggttt ttgctttaca
      121 taaaataggt gtgagtgaaa ttttggttaa aagctatgct tttttgatgc aagataagag
      181 tggaattttt ggtgtggctt tgatttcagc ttttggatct tctgtgttta ataatttgcc
      241 tatggtttta atcggagatt tggcattaaa agaatatttt gagaattttt cttttgattc
      301 tttgatgatt tatgcacatc ttttaggtgt aaatataggt ccaaaactta cgccaatagg
      361 ttctttagca actttgcttt ggcttggagt tttggctaga aaaggcatta atatttcttt
      421 ttggcaatat tgtaaatttg gctttttgat aactttacct gtgcttgttt tttctctttt
      481 tgctcttatt gtctaaatat caaaacttgt taaacaaaga aaaaatttat tttaatttcg
      541 ataaactttt aacttggtta aaaaataaaa tcgaaaggag caagttatgg ctacatctga
      601 gagtagacga agctttatgg gctttgcatt tggaagcgta gctgctgtag gcggtgtttt
      661 ctcacttgtt gcgatgaaaa aaacttggga tccgcttcca agtgttaaag ctgcaggttt
      721 tactacagta gatttatcag gaatgcaaga tggagagctt agaactatag aatggcgtaa
      781 aaagcctatt tttatattaa aaaaagatgc gagtatgcca aaagatgaaa aacgtgatgt
      841 tgtggtagat aacgcagctt atactgtggt tataggactt tgtacgcatt tgggttgtat
      901 acctgcttac caaccaagtg agcaattgtt taaatgcgcc tgtcatggtg gagaatttga
      961 cacaagtgga aaaaatgtct ttggacctcc tccaaagcct cttgaaattc ctccttttaa
     1021 aattgatgga accaagcttg ttttaggtga agagggtcct gaatataaaa aaatgatagc
     1081 ggaggcttaa gatggcacaa attagaaaag ctaatggtct tgtagattgg cttgatcaaa
     1141 gacttgcggt acataaactg cttgatgttt taatggtaaa atattggata ccaaagcaaa
     1201 ttaactttct ttgggcaatg ggggttattt taaccactct ttttgcagtg ctttttgtta
     1261 caggactttt acttgtgatg tattataaac cagatactgc acttgctttt gatagtgtga
     1321 ataagactat tatgcaagag gtggactatg gatggctttg gcgtcacatg catggtgttg
     1381 ccgcttctgt tgtatttttg attatataca tacatatgct aacaggaatt tattacggtt
     1441 cttataaaaa aggtcgtgag atgatttggg ttagcggtat gcttttgttt gttgtatttt
     1501 ctgctgaagc ttttagtggg tatatgcttc cttggggaca aatgagttat tgggcagctc
     1561 aagtaatcac taatcttttt ggagggatac catttattgg ccctgagctt gtgatttgga
     1621 ttcgtggaga ttatgcggtt tctgatccaa ctttaacaag attttttatg cttcatgtgt
     1681 gcttgcttcc tatagttatc attgctatta tagcatttca cttctattct ttaagaattc
     1741 ctcatgttaa taatgaaatt tctgaagaac ttgactttga tttagaggct gaaaaataca
     1801 tggcaggtga cacaaagggt tctaaagtga ttcctttttg gccaggattt ttatcaaaag
     1861 attttatgta tataagcttt tttatgattt tcttctttta tttggtctgt tttaaatttg
     1921 aatttgcaat ggatccaatt aattttgatc cagctaatgc gcttaaaaca ccagctcata
     1981 tttatcctga gtggtatttc ttatggagtt atgaagtttt aagaggattt ttctttgata
     2041 ttgcaggtat taaagctttt gatataggtt tggctgcatt tggtattgct caagtgattt
     2101 tcttcttgct tccttggctt gatagaagtg atgtggtaaa accagctcat gaaagacctt
     2161 tatttttcat ttggttttgg atattgctta ttgatttaat tgttttaact gtttatggaa
     2221 aattacctcc aacaggtgta aatgcttggg taggatttta cgcttctata gtatttttac
     2281 ttttacttat tgtagtttta ccggttatta ctattatgga gagaaaagga gctaaacaat
     2341 gagagaaata aaaatatttt tagttgtagt agtttttact gcacttgtat attggggggt
     2401 agagccttat gctcattcag tgatgaagcc tcatgttgct cctgcaaatt ttgattttgc
     2461 tgttgaagat actacttttg caaaaggtat agttgaagct aaagaattag ctctaaaaga
     2521 tgcacaagct tcaggagatg ctaaaagaat agagagtgca aacaaagaac ttgaaaaagc
     2581 aaaagaagaa ttaagcaagg ttgaaacact ttgggcagat gttgcaaaga tcgattttgc
     2641 taagggtgat gcaaaaaaag gtaaagaatt ttttgaaaat aactgttttg catgtcatgg
     2701 tgtaaaagaa gatggaatag cagctaatat tactgattct tctatgggag taataccgcc
     2761 tgatctcagt gcagctggtg ctatttttga tgaaaaattt ttagcagctt tgattatgca
     2821 tcctgcgctt gctttaaaag tagatcataa atttggtgat gcttttatta tgacagctta
     2881 caataaagat acttcaggag aaagtgaaga agctacaaat gcaaatatag ccaatgtaat
     2941 tgcttatctt aaagatgtga gtgttaaatt tgaagccaat gaagatgcta ctattaagaa
     3001 agatgttgag gcaaaatatg ctaaaatgga aaatagtgct caaaaagcag ctttaatgga
     3061 aaaagatata aaatttgcta aagataaagc aacttttatt gaggcttgcg gacgttgtca
     3121 tgatatgaaa tacgatagct tttttactcc atcaaatcaa aatgatttaa aaacttattt
     3181 aggttctgtt ccacctgatc tttctatgat gataagatct cgtggtgagc aatatttaca
     3241 tgattttatt aataatactc aaaaacttct tccaggaacc gctatgccaa gagtaggttt
     3301 aacagaagct gcacaggcta aggttgtatc ttatattgat caagtgggtg atagcaaaaa
     3361 agaagaaaga aaaactacag gaatttatgt aatgatattc tttgtaattt taagtatttt
     3421 tgctataggt tggaagcgtt ctgtttggtc taaattacat tagtattata a
//
LOCUS       DARGEY010000129         3387 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.129, whole genome shotgun sequence.
ACCESSION   DARGEY010000129 DARGEY010000000
VERSION     DARGEY010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3387)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3387)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3387
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.129"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            51..623
                     /locus_tag="SF008_001583"
     CDS             51..623
                     /locus_tag="SF008_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HEG8233823.1"
                     /translation="MTGALAAGRHKMDLFGVIFIALVTAIGGGSIRDVLLGHYPLTWV
                     KHPEYIILICFCALVATKIPRVVTKLETLFLTLDAIGLVVFSILGAQIAIDQNHGFII
                     AVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAIIAGAIYYSLIIWLELNALVCT
                     LLTLFIGVFARLLAIKYQWSLPIFSYNEEK"
     gene            681..1127
                     /locus_tag="SF008_001584"
     CDS             681..1127
                     /locus_tag="SF008_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233824.1"
                     /translation="MRRLSILLAILIVINITACDSKTENYYKNLPSEAKEKAKEKAKE
                     CKESGTLSEDCINALKVGVKSTNEEGKYSPNTPKKSDNQILEALKQNDLKKEKTTKDI
                     NQSSENNESIIIPPIAETPSEIYPSKTTENNQSSIFSDDVNMTQEK"
     gene            1124..1345
                     /locus_tag="SF008_001585"
     CDS             1124..1345
                     /locus_tag="SF008_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEG8233825.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYKIGFPKDEWEDENISNP"
     gene            complement(1335..2045)
                     /gene="cmoA"
                     /locus_tag="SF008_001586"
     CDS             complement(1335..2045)
                     /gene="cmoA"
                     /locus_tag="SF008_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HEG8233826.1"
                     /translation="MMKDELFKQNPKKQFEFDKSVASVFDDMINRSVPFYRENLELCG
                     NLLAKILPTNASVCDLGCSSANFLIFLANLRKDFKLFGVDNSASMLEVAKSKAKAYGL
                     DISFFEANLCEFDFFTCDVFVANYTMQFIRPPKRQELLDQIYKNLNSKGILIMSEKIL
                     YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKK
                     IESIFKWANFETFIAFKD"
     gene            complement(2032..2886)
                     /locus_tag="SF008_001587"
     CDS             complement(2032..2886)
                     /locus_tag="SF008_001587"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEG8233827.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKYLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFESIKSLDGKDFLSFLKKEFTSLKFIVVGYDF
                     SFGKNRAYSAKDIEFLSGIKTIIVDEFSIGGIGVHASLIKDFLSRANLQKAKEFLGRN
                     YSIKGKVIKGQGLGSKELFATINLDCEGYFLPQNGVYATLLKSQRKTYKSVSFLGVRS
                     SDENFAIESHILEELGENFMQGEFFELEFISFLRENQKFQDLKKLKNQITKDIEQARE
                     LLRKNDER"
     gene            complement(2852..>3387)
                     /locus_tag="SF008_001588"
     CDS             complement(2852..>3387)
                     /locus_tag="SF008_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEG8233828.1"
                     /translation="AALKLKKFLEENDIEIKHKNCLDIGSSTGGFVQILLENQALKIT
                     ALDVGSNQLHPSLRANEKIILHENTDLRAFKSEEKFELVTCDVSFISLINLLYYVDNL
                     ALKEIILLFKPQFEVGKNIKRDKKGVLKDDKAILKARMDFEKECAKLGWLLKNTQKSS
                     IKGKEGNVEYFYYYIKN"
BASE COUNT         1205 a          570 c          425 g         1187 t
ORIGIN      
        1 atgctcttac gataaccact ctttatatca taggtatttc cgcagaagga atgacaggag
       61 ctttagctgc aggacgccac aaaatggatc tttttggagt tatttttatt gctctcgtaa
      121 cagcaattgg aggcggaagc atacgagatg tgcttttagg acattatcct ttaacttggg
      181 ttaaacatcc tgaatatatt attttaatct gtttttgcgc ccttgtagcc acaaaaattc
      241 cgcgcgtagt aaccaaactt gaaactttat ttctaactct tgatgctata ggacttgttg
      301 tttttagcat acttggagct caaatagcta tagatcaaaa ccatggcttt atcatagccg
      361 ttgctgccgc tgtaattacc ggtgtttttg gtggaatttt aagagatatt ttatgtatga
      421 gaatcccctt ggtgtttcaa aaagaaattt atgcaggaat tgccataatt gcaggagcaa
      481 tctattattc tctaataatt tggcttgagc ttaatgccct agtttgcaca cttttaactc
      541 tttttatagg agtttttgca aggcttttag ctatcaaata tcaatggtct ttacctattt
      601 tttcttacaa tgaagaaaaa taatttatcg ttgctttata caagtttgct aagatattaa
      661 aaattttagg agattgataa atgcgaagac taagtatttt acttgcaatt ttaatagtta
      721 ttaatataac agcttgtgat agtaaaacag aaaattacta caaaaatctt cctagcgaag
      781 caaaagaaaa agcgaaagaa aaagcgaaag aatgcaaaga aagcggaact cttagcgaag
      841 attgtattaa tgcattaaaa gttggtgtta aatcaacaaa tgaagagggt aaatacagtc
      901 caaacacacc gaaaaaatct gataatcaaa tattagaagc tttaaaacaa aatgatttaa
      961 aaaaagaaaa aaccacaaaa gatattaacc aaagttcaga aaataatgaa agtattataa
     1021 taccacctat agcagaaaca ccttctgaaa tttatccttc caaaacaaca gaaaacaatc
     1081 aaagttctat ctttagcgat gatgttaata tgacacagga aaaatgacca tgaaaataac
     1141 tcttttttta agccttattg gtatattttt tgcagcatgc gaacaaacca aaagtgtaga
     1201 atattatcaa aatcaccccg aggaagcaaa aaaaagaagt ttagaatgca gacacaaagc
     1261 tatcattagt caagattgtg ttaatgcata taagataggt ttcccaaaag atgaatggga
     1321 agatgaaaat atttctaatc cttaaaagct atgaaagttt caaaatttgc ccatttaaaa
     1381 atactttcta ttttcttaaa acctgccttt tctagcatat ttaaattttc tttttgacta
     1441 taaggaatta aaacattttc caaagcttct cttttagctg cgatttcaaa cttagaatag
     1501 ccttgttttt ctttataatc agcataaagt tctatgatat ttttagacaa aaaagcatct
     1561 tcataaagga ttttttcact cataatcaaa atgcctttag agtttaaatt tttataaatt
     1621 tgatcaagca attcttgtct tttaggagga cgaataaact gcatggtata atttgctaca
     1681 aaaacatcgc aagtaaaaaa atcaaattcg cataaattag cttcaaaaaa acttatatca
     1741 agcccataag ctttagcttt tgattttgca acttcaagca tggaagcaga attatccacg
     1801 ccaaaaagtt taaaatcctt tcttagattt gccaaaaaaa tcaaaaaatt agcacttgag
     1861 cagcccaaat cgcaaacact tgcatttgta ggtaaaattt tagccaataa attgccacaa
     1921 agttctaaat tttctctata aaatggtaca gaacgattga tcatatcatc aaaaacacta
     1981 gccacgcttt tatcaaattc aaattgtttt ttagggtttt gtttaaaaag ttcatctttc
     2041 atcatttttc cttaataatt ctctagcctg ttctatatct ttagtaattt gatttttaag
     2101 tttttttaga tcttgaaatt tttgattctc tcttagaaaa gatataaact cgagttcaaa
     2161 aaactctcct tgcatgaaat tttcacccaa ttcttctaaa atatgacttt ctatagcaaa
     2221 attttcatcg cttgatctta cacctaaaaa actcacactt ttataagttt ttctttgact
     2281 ttttaacaaa gtagcgtaaa caccattttg aggcaaaaaa taaccttcgc aatctaaatt
     2341 tatagttgca aaaagttctt tagaacctaa gccttgtcct ttaattacct ttcctttgat
     2401 gctataattt ctccctaaaa attcttttgc tttttgcaaa tttgctcttg ataaaaaatc
     2461 cttaattaaa cttgcatgaa cacctattcc acctatgcta aattcatcaa ctattatagt
     2521 ttttatccca cttaaaaact caatatcttt agcactataa gccctatttt tcccaaaaga
     2581 aaaatcataa cccacgacta taaattttaa actggtaaat tcttttttca aaaagcttaa
     2641 aaaatcttta ccatctaaag attttatact ttcaaaatcc acttctataa ctttttttcc
     2701 tgaaatttct tctttttgac gatttgaaca aagaaattga cctttaaatt tattaataac
     2761 tagcaaagcc ccattctcat ctaaatattt tacaagtttt agatgtccta aatgcatacc
     2821 atcaaaacaa cctatggcta aagaagtaat attaattttt gatatagtag taaaaatatt
     2881 caacattacc ttcctttcct ttaatgcttg atttttgcgt attttttaaa agccaaccta
     2941 acttagcaca ttctttttca aaatccattc ttgcttttaa gattgccttg tcatctttta
     3001 aaacaccttt tttatctctt ttgatatttt ttcccacttc aaactgaggt ttaaaaagta
     3061 aaataatttc ctttaaagct aaattatcga cataataaag taaattaata agagaaataa
     3121 aactcacatc acaagtaaca agttcaaatt tttcttcact tttaaaggct ctaagatctg
     3181 tattttcatg caagataatt ttttcatttg ctcttaaact tggatggagt tgattactac
     3241 ccacatcaag agcagtgatt tttaaagcct gattttcaag taaaatttga acaaaaccgc
     3301 ccgtactaga tcctatatca agacaatttt tatgttttat ttcaatatca ttttcttcta
     3361 aaaatttttt taatttcaaa gctgctc
//
LOCUS       DARGEY010000130         3355 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.130, whole genome shotgun sequence.
ACCESSION   DARGEY010000130 DARGEY010000000
VERSION     DARGEY010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3355
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.130"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            208..1239
                     /gene="pseI"
                     /locus_tag="SF008_001589"
     CDS             208..1239
                     /gene="pseI"
                     /locus_tag="SF008_001589"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HEG8233829.1"
                     /translation="MQIGNFNTDEKVFIIAELSANHAGSLEMALKSIKAAKEAGADAI
                     KIQTYTPDSLTLDCDKDDFIIKGGLWDKRKFYELYESAKTPYEWHSQIFEAAQDAGIL
                     CFSSPFAKEDVEFLKRFDPIAYKIASFEANDENFVRMIAKENKPTIVSTGIANEEELF
                     KICEIFKEEKNPNLIFLKCTSAYPAQISDMNLKGIASLKEKFGVEVGLSDHSFGHLAP
                     VMAVALGARVIEKHFMLDKNIKSEDSEFSLDFDEFKAMVEAVREAESALGDGSLALDE
                     KGLKNRVFARSLYASKDIKKDEIFSEENVKSVRPSFGLHPKFYKELIGKTATKDIEFG
                     TALKQGDFQ"
     gene            1236..2204
                     /gene="legB"
                     /locus_tag="SF008_001590"
     CDS             1236..2204
                     /gene="legB"
                     /locus_tag="SF008_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038816896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HEG8233830.1"
                     /translation="MKTLVTGADGFIGSHLCESLVQKGYKVRALSQYNSFNFWGHLEK
                     SPYLKDMEVVSGDLRDSFFCEKITQGMDAIFHLGALIAIPYSYEAPQSYVDTNVKGTL
                     NMLEAAKKNEISHFIHTSTSEVYGTARYVPIDEKHPLQPQSPYSASKIAADMMALSYY
                     NAFNLNVNIARPFNTYGPRQSARAIIPTIITQILSGTKELKLGNLSPTRDLNFVLDTC
                     EGFISLLKLNHFGEVYNIGSGTEYSMQEVLDLIQKILNQNVKIIQDEKRLRPKNSEVF
                     RLKCDSSKLQNATHWQSKISLEEGLKLSIEYFKENLASYKSEVYNV"
     gene            2197..3339
                     /locus_tag="SF008_001591"
     CDS             2197..3339
                     /locus_tag="SF008_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LegC family aminotransferase"
                     /protein_id="HEG8233831.1"
                     /translation="MFENEIAFIKKLFNKEKIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVARFEEALKQRTKARFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AIAYTGARAIFLDIDENTLSLGPKALQNFLENHSYQKDGFTYNKITHKRIKACVVMHT
                     FGLSADIEKLCEICKNYNIFLIEDAAEALGSTYKNKALGTFGKCGILSFNGNKIITGG
                     SGGAILCDDENLANLTKHLSTTAKIPHPYEYDHDIIGYNYRLCNINAAILLAGLEKLD
                     FFLENKRELAQIYKEFFTNHKACKFIDERKNSKSNFWLNALCFKDGNLRNTFLQECLE
                     NNIFVRPVWKSLPSLKPFQTWQKDELLNTQKLEKCLVNLPSSVRLN"
BASE COUNT         1233 a          497 c          605 g         1020 t
ORIGIN      
        1 tatatttaag cttataattt tctaaaaata aaaatcttaa aattaaaaat ttttcaagaa
       61 aacttgcagg ttatcaattt gcacaaaaat ttggttttgg cgttaccaaa gaaacaatca
      121 aacatgataa aaaaattttt atcatgcaat tagttttttt aaaaaaagtc gatataatgc
      181 aaaataagaa ccataaaagg caaaatcatg caaataggaa attttaatac cgatgaaaaa
      241 gtttttatca tagcagagct gtccgcaaat cacgcaggaa gtcttgaaat ggcacttaaa
      301 agcataaaag cagctaaaga agcaggagca gatgcgataa aaattcaaac ctacactcca
      361 gatagtctca cgctagattg cgataaagat gattttatca tcaaaggggg actttgggat
      421 aagcgcaaat tttatgagct ttatgaaagc gctaaaactc cttatgagtg gcattctcaa
      481 atttttgaag ccgcacagga tgcgggtata ctttgttttt caagtccttt tgcgaaagag
      541 gatgtagagt ttttaaaacg ctttgatccc atcgcctata aaatcgcctc ttttgaagca
      601 aatgatgaaa atttcgtgcg tatgatcgcc aaagaaaaca agcctaccat cgtttcaact
      661 ggtattgcaa acgaagaaga gctttttaaa atatgtgaaa ttttcaaaga ggaaaaaaat
      721 cctaatctga tctttttaaa atgcacttca gcttacccag cacaaatttc tgatatgaat
      781 ttaaaaggta ttgcaagttt aaaagaaaaa tttggcgttg aagtaggact tagtgatcat
      841 agctttggac acttagctcc tgttatggct gttgcgcttg gggctagagt gatagaaaaa
      901 cattttatgc ttgataaaaa tataaaaagc gaagatagtg aatttagtct tgattttgat
      961 gaatttaaag ccatggtgga agcagtaaga gaggctgaaa gtgctttggg tgatggctcc
     1021 ttagccttag atgaaaaagg tcttaaaaac cgcgtttttg ctagaagttt atatgcaagc
     1081 aaagacatca aaaaagatga aatttttagc gaagaaaatg taaaatcagt gcgtccttct
     1141 tttggtcttc atcctaaatt ttacaaagaa cttataggaa aaactgctac taaagatata
     1201 gaatttggca cagctttaaa acaaggagat tttcaatgaa aaccctagta acaggtgcag
     1261 atggttttat aggctctcat ctttgtgaga gtttggttca aaaaggctat aaagtaagag
     1321 ctttaagtca atataattct tttaactttt ggggacattt ggaaaaaagt ccttatttaa
     1381 aggatatgga agttgtaagt ggggatttaa gagatagctt tttttgtgaa aaaatcaccc
     1441 aaggaatgga cgctattttt catcttggag ctttaattgc cattccttat tcttacgagg
     1501 caccgcaaag ttatgtagat actaatgtaa aaggtacttt aaatatgcta gaagctgcga
     1561 agaaaaatga aatttctcat tttatacaca cttctacaag cgaagtttat ggcactgcaa
     1621 gatatgtgcc tattgatgaa aagcaccctt tgcaacctca aagcccctat tctgctagta
     1681 aaatcgcagc ggatatgatg gcgcttagtt attataatgc ttttaattta aatgtaaata
     1741 ttgctcgccc tttcaatacc tatggaccaa gacaaagcgc aagagccatt atacccacta
     1801 tcataacaca aattttaagt gggacaaaag aattaaaact tgggaattta agtccgacaa
     1861 gggatttaaa ctttgtcctt gatacttgcg aaggctttat ctcgcttttg aaattaaatc
     1921 attttggaga agtgtataac ataggctctg ggactgaata ctcgatgcaa gaagtgcttg
     1981 atcttataca aaaaattcta aatcaaaatg taaaaatcat ccaagatgaa aaaagattgc
     2041 gcccaaaaaa tagtgaggtt tttagactaa aatgcgattc aagcaaactt caaaatgcaa
     2101 cccattggca aagcaaaata agtcttgaag aaggcttgaa actaagcata gaatatttta
     2161 aagaaaattt agcaagttat aaaagtgaag tttacaatgt ttgaaaatga aattgctttt
     2221 attaaaaaac ttttcaataa agaaaaaatc gccttgcacg aaccttgctt tatcggaaat
     2281 gaaaaaaaat atctcttaga atgcattgat agcggttttg tttcaagcgt aggtgagttt
     2341 gtagcgcgtt ttgaagaagc tttaaaacaa agaacaaaag ctcgatttgt tatcgctaca
     2401 aatacaggca ccgccgcact tcatatcgct ttacttgcaa atggtattga tgaaaattgt
     2461 gaggtgatta cccaaagtat tagctttgtt gcaacggcaa atgctattgc ttacacagga
     2521 gctagggcta tttttttaga tattgatgaa aatactttaa gtttaggccc taaagcttta
     2581 caaaattttt tagaaaatca cagctatcaa aaagatggct ttacttacaa taaaatcaca
     2641 cataagcgca tcaaagcttg tgttgtaatg cacacttttg gccttagtgc tgacatagaa
     2701 aagctttgcg aaatttgtaa aaattataat atttttttaa tcgaagatgc cgccgaagct
     2761 ttaggaagca cttataaaaa caaagcttta ggtacttttg gaaaatgtgg aattttaagt
     2821 tttaatggaa acaaaatcat cacaggtgga agtggcggag cgattttatg cgatgatgaa
     2881 aatttggcaa atcttacaaa gcatttaagt actactgcta aaatacctca tccttatgaa
     2941 tacgatcatg atatcatagg ctataattat agactgtgca atataaatgc cgcaatttta
     3001 cttgcgggac ttgaaaagct agatttcttc ctagaaaaca aaagagaatt ggcacaaatt
     3061 tataaggaat tttttacaaa tcataaagct tgtaaattta tagatgaaag aaaaaattca
     3121 aaaagcaatt tttggctcaa cgctttatgt tttaaagatg gaaatttaag aaatacattt
     3181 ttacaagaat gtttagaaaa caatattttt gtgcgtcctg tatggaaaag cttacctagc
     3241 cttaaacctt ttcaaacttg gcaaaaagat gagcttttaa atactcaaaa attagaaaaa
     3301 tgtttggtaa atttacctag cagtgtaaga ttaaactagg aataatatat accaa
//
LOCUS       DARGEY010000131         3346 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.131, whole genome shotgun sequence.
ACCESSION   DARGEY010000131 DARGEY010000000
VERSION     DARGEY010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3346
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.131"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..408
                     /locus_tag="SF008_001592"
     CDS             <1..408
                     /locus_tag="SF008_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HEG8233832.1"
                     /translation="LLLGALFAVNLWAVNDIEVKNAFVKQTPPHAQNSAIFLTIFNNT
                     DKDIALISAKSDISEVSELHTHIHKDGKMMMQKIPEIIIKAHSSTELKSGGYHIMLLK
                     LKKPIIKDTKVNLDLKFNNHKTIELKNIDSKEF"
     gene            412..864
                     /locus_tag="SF008_001593"
     CDS             412..864
                     /locus_tag="SF008_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233833.1"
                     /translation="MRKIIFILAFAFVIAILYIIFDFYVIKDSQKITKTDFSTPLTCD
                     LNVKDCTYSFNNKKVLISLNPKPLQSLDVTNLKIVNLGNYNNLGIKIYGLNMYMGEIK
                     PKIHRLNSTDYESKIVLAACVLDTMRFRVEFMDNNKPIGFYFDFELKK"
     gene            861..1421
                     /locus_tag="SF008_001594"
     CDS             861..1421
                     /locus_tag="SF008_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEG8233834.1"
                     /translation="MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLK
                     DFKGDKLIIYFGYTYCPDVCPATLSLVGKALKQINNPKAHLLFISLDPNRDNNLSNTN
                     EWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEK
                     GHFYKEISDLNPQEILRELRIFLNSQ"
     gene            complement(1428..2327)
                     /gene="cysM"
                     /locus_tag="SF008_001595"
     CDS             complement(1428..2327)
                     /gene="cysM"
                     /locus_tag="SF008_001595"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HEG8233835.1"
                     /translation="MKVYEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMI
                     TLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEVIDEVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(2454..2750)
                     /locus_tag="SF008_001596"
     CDS             complement(2454..2750)
                     /locus_tag="SF008_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEG8233836.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
     gene            complement(2852..>3346)
                     /locus_tag="SF008_001597"
     CDS             complement(2852..>3346)
                     /locus_tag="SF008_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3916 domain-containing protein"
                     /protein_id="HEG8233837.1"
                     /translation="SGFFKNIEEYKATTGGLINFFYHEQDDLIMPVFHELIKRAIGLI
                     SWQRVDEVRPYYTEGLIHLSLLFESEVLIFENNNLKINFDLRYYEKFKELTLKNYHEL
                     AKHYALRLDAKEFLSRFCEIEDNIFLPIMPKCKEFVKFYYDLYEKIGNEIDNSGEFER
                     YKKK"
BASE COUNT         1196 a          531 c          399 g         1220 t
ORIGIN      
        1 cttctcttag gtgctctttt tgctgtaaat ctttgggctg ttaatgatat agaggtaaaa
       61 aatgcctttg taaaacaaac tccacctcat gcgcaaaata gtgctatttt tcttactatt
      121 tttaataata ctgataagga tattgctcta ataagtgcca aaagcgatat cagtgaagtc
      181 agtgaactgc atacacatat acataaagat ggaaaaatga tgatgcaaaa aattcctgaa
      241 attattataa aagctcattc aagcacagag cttaaatctg gaggttacca tataatgctt
      301 ttaaaactaa aaaaacctat tattaaagac acgaaggtaa atttagattt aaaatttaat
      361 aatcacaaaa ccatagagtt aaaaaatatt gattctaaag aattttaatt aatgagaaaa
      421 attattttta tcctagcttt tgcttttgtt attgctattt tatatattat ttttgatttt
      481 tatgtaataa aagattctca aaaaataaca aaaactgatt tttctacccc attgacttgc
      541 gatcttaatg ttaaagactg cacatatagt tttaacaata aaaaagtctt aatttcccta
      601 aatcccaaac ccttacaatc tttagatgtt acaaatctaa agattgtaaa tctaggaaat
      661 tataacaact taggaattaa aatttatgga ttaaatatgt atatgggcga aattaaacct
      721 aaaatacatc gattaaattc aacagactat gaaagtaaaa tagttcttgc tgcttgcgtt
      781 ttagatacta tgcgtttcag ggtagaattt atggataata ataaacccat agggttttat
      841 tttgattttg agctaaaaaa atgaaaaaaa atattatttt gtttatagtt atagttgcca
      901 ttattttagg tgtaatattt tttattaaaa atcatcaaaa ttcttatgat tttatcttaa
      961 aatcagactt aaaagaggaa accaccctaa aagattttaa aggagataag cttattatct
     1021 attttggata tacttattgc cctgatgttt gtccggcaac tcttagttta gtaggcaaag
     1081 ccttaaagca aatcaataat cctaaggctc accttctttt tatttcttta gatccaaata
     1141 gagataataa cttaagcaat acaaacgaat ggttacgata cttttaccca aaagcagatg
     1201 ccttaattgc aaaagatgaa aaaactcttc aaaaaataac aaaacaatat aatgttcaat
     1261 atcaaaaaat agatctaaat gattctttta tgggttattc tatagcacat agcaatatgc
     1321 tttatcttat tgatgaaaaa ggtcattttt ataaagaaat tagcgattta aatccacaag
     1381 aaattttaag agaacttaga atttttctaa attctcaata attatactta agcaaaaaga
     1441 tcagttgaga ggtatctttc agccgtatcg tttagcatag ttaaaattct tttatctgga
     1501 aatttctttg ctagcatact tgcggcaaat acatttgctc cacttgatat acctaccatt
     1561 aaaccacttt tggcaagttc tttggctgta tttatagcat cttcattact tactgtgatc
     1621 acttcatcta taacttcttt atttaaaata gcaggtataa aattcgcccc tattccttgt
     1681 attttatggc ttcccgcttc acctttgcta agcaatggag aatttagagg ctcgactcca
     1741 acaatatgca ctttttctaa tttttctttt agtatttccc caactccact aatagtaccg
     1801 ccagttccaa aaccagctac aaaaatatca agttcattat ccaaatctct taaaatttct
     1861 aaagccgtat tcttacgatg cgcattttta tttgaaatat tttcaaattg agaaaccata
     1921 aaagaatttg gagtatttaa taatatttca tttgctttat caaccgctcc tttcattcct
     1981 aaatttgcag gagttaattc taacctagcg ccaaagagtg ttatcatttt tcttctttct
     2041 aaactcatag attcgggcat tacagcaata aatttaagtc ccaaatctgc acaaatcata
     2101 gccaaagaaa ttccagtatt tccactagtt gcttcaacta ttgtagtatc ttgattaatt
     2161 tttttactat ctaaagcatc tttaatcatt tcaaaagctg ctctatcttt tatagaatga
     2221 ctaggattta aaaattcaca tttagcaaaa acattgatac caaatttttt caaatgtata
     2281 ataggagtat ttcctataag ctcacttact ttttcatata ctttcataat tttaatatcc
     2341 ttttttattt aataatgata gttttataaa agtttaaaaa aataaagtaa ataaaagata
     2401 taaaatatct ggatcaatta agaaagaagg ctagaattta tctagccgaa gttttatttt
     2461 ttctttttgc cgcttgcttt tgcaacagct tctttaaggt ttttacctac cttaaatttt
     2521 gcaactcttg tagcaggaac tttgattgtt tttcctgtgc ttggtactct agcttctcta
     2581 gcagctcttt cttgagttga aaaagtacca aaaccaataa aactgatgct atcaccttta
     2641 gctaaaacat cagtaatagt agaaataact gcatcagtag cagtagtagc gtcttttttt
     2701 gttagcccag ctgtttgagc aactaatgaa ataaaatctg ctttagtcat aaaagctcct
     2761 ttgttttaat tgaaacgcct aattttagca tatttaaaaa acaatatcaa gtaaaaaaca
     2821 gcttttttta agtttttttc aaaaaacttt attatttttt cttatatctt tcaaattctc
     2881 cactattatc aatttcatta ccaattttct cgtataaatc ataataaaat ttaacaaatt
     2941 ctttacactt aggcataata ggaagaaaaa tattatcttc aatttcacaa aatctactta
     3001 aaaactcttt tgcatcaagt cttaaagcat agtgttttgc caattcatga taatttttta
     3061 aagttagctc tttaaatttt tcataatacc ttaaatcaaa atttatcttc aaattattat
     3121 tttcaaaaat caatacttcg ctttcaaaaa gcaagctaag atgaataagt ccttccgtat
     3181 aataaggtct aacttcatca accctttgcc aagaaataag tccaatagct ctttttataa
     3241 gttcatgaaa aacaggcatt atcaagtcat cttgttcatg ataaaagaaa tttataagtc
     3301 cacctgtagt agctttatat tcttctatat ttttaaaaaa accact
//
LOCUS       DARGEY010000132         3216 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.132, whole genome shotgun sequence.
ACCESSION   DARGEY010000132 DARGEY010000000
VERSION     DARGEY010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3216)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3216)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3216
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.132"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..791)
                     /locus_tag="SF008_001598"
     CDS             complement(<1..791)
                     /locus_tag="SF008_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8233838.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWIASPLLGGIVAYIIYSYIDKKILKPSEKLNDDLKNIKKE
                     RKKFKEEYFLNLKTKSQEEQIKELSAIALDEEEQENNFYRNKMKE"
     gene            933..1739
                     /locus_tag="SF008_001599"
     CDS             933..1739
                     /locus_tag="SF008_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HEG8233839.1"
                     /translation="MRGIFYIIALFSLLNGDELTEALAKNNNQNSWEHFDYKNTKEAP
                     KIQEENVDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENAQVKNLSSLYEGENNSLL
                     FQKELFVAQDNYNYSGGLINRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIK
                     AYSNYYIPNEAEKKLQLGMSFVIPTYTAFAFDISKDNDKTNYQVSYSPYSVFSLNLLR
                     RDYSARETVDDTVVQVGFSFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
     gene            complement(1736..3112)
                     /locus_tag="SF008_001600"
     CDS             complement(1736..3112)
                     /locus_tag="SF008_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HEG8233840.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIITGIVLGYTDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLDPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRIEDKQAIQRVFEVVQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVAAIGVLLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
BASE COUNT         1143 a          500 c          468 g         1105 t
ORIGIN      
        1 aattccttca ttttatttct atagaaatta ttttcttgtt cttcttcatc caaagctata
       61 gcggaaagtt ctttgatttg ttcttcttgg gattttgttt ttaaatttaa aaaatattct
      121 tctttgaatt tttttctttc ttttttgata tttttcaaat catcatttag tttttctgat
      181 ggttttaaaa ttttcttatc aatatatgaa taaataatat aagctacaat accccctaaa
      241 agaggagaag ctatccaaga aatagctatt cttaaaattt cactccattt aaccatagag
      301 agtgtttgga ttccatcaaa ttttaaaagc cccatcataa tgctagcacc tacaatccca
      361 ccaactatac tgtgtgtggt tgatacaggt aagcctttct tggttgcaat aaaaatccaa
      421 accccagagc ttaaaagtgc agcaagcata atgataacaa aaagcatagg atctaaagaa
      481 tttggaaaaa taacaatacc gctgcgtatg gttttagtaa cttctgcgcc tgcgaagatt
      541 gccccgctta gctcaaaaac agctgctata attaaagctt gtttaatggt tactgttttt
      601 gcgccaacgc ttgttccaaa agaattggct acatcatttc cacctatatt aaatgccata
      661 aaaatgccaa atatagaagc aagaataaaa agaatcaatt gatgttgcga aatataacca
      721 aatccccaaa taacaaatgc gatagtactg ataataaaaa taacaaaagc tatgaggttg
      781 tctttttgca ttaataaccc ttttttattt taattataca cttatttact ttaaatttgc
      841 taattttatt ttttagtctt tgtggaattt ttatttatat tattttttta taataaatac
      901 ttaaacaaga aataataagg aatataagaa taatgagggg tattttttat ataatagcat
      961 tgttttcttt actcaatggc gatgaactta cagaggcttt agcaaaaaat aataatcaaa
     1021 attcttggga gcactttgat tataaaaata ccaaagaagc tccaaaaatt caagaagaga
     1081 atgtggattt taaaagcact tttgatagct tactttcaaa aactttagaa aataataatg
     1141 gtatagataa aacagatggg aatttagatt ttcaaaatga aaacgcgcag gttaaaaatt
     1201 taagttctct ttatgagggg gagaataatt ctttgctttt tcaaaaagaa ctttttgtgg
     1261 ctcaagataa ttataattac tcagggggtt taatcaatcg ttatgaaaaa gatgattttt
     1321 tatttggagt taatggtttt attgataaac aaaaagaaca aaaagatact aaaagctttg
     1381 gtacagagtt tggttatagt aaatttataa aggcttatag taattattat atacccaatg
     1441 aagcagaaaa aaaattacag cttggaatga gttttgtaat tccaacttat accgcttttg
     1501 cttttgatat aagtaaggat aatgataaaa ctaattatca agtatcttac tctccttata
     1561 gtgtatttag tttaaattta ttgcgtcgtg attatagtgc aagagagact gttgatgata
     1621 ctgttgttca agttggattt agttttaatt tcaatgaaag ttttttaaag caatttagaa
     1681 aaaaagataa tactttagag gaggttaatc gatatgattt cctccaaaga actcattagt
     1741 tcattccagc attatgaaat ttttctggat tgtccatagc gtagcggaat ttttcccaat
     1801 caatttgttt atcccagata gcaacgatta aagctgctac tgaatttccg caaagatttc
     1861 caaccgctct catttcagac ataaatttat caacacctaa aagaacacct atagcagcta
     1921 ctggtagaac ttgtgctaag gttgcatttg cttctgaaat ttccatattt cctagagccg
     1981 caagcgtact tccaagcact ataaaacctg atccagttac acctactgca ccttttgagg
     2041 ctatcattaa tactattaaa atactgattt cgtgtgctaa acttaaattt acattgaaag
     2101 cttgtgctag aaagattaag ctcatagcta gataaatatt tgtacaatca agattaaaac
     2161 tatatcccgt tggtaaaaca agtccgactg ttgctttaga aagtcctgct ttttctagtt
     2221 ttctcattaa aggagcaagt gcagactcgc ttgaactggt tgcaaaaacg atcaatactt
     2281 ctcttgagat aaatctcata aatttgaaga tatttacttt tgcaaaataa caaatcagac
     2341 ctaagattcc aaatataaaa acaagacatg aaatcagcat tactaaaagt aaatatgcta
     2401 agttgatcaa agagccaatt ccgtattgag ctatgagtac agccattgct gaaaaggcgg
     2461 caataggact aaaatacata atgatttgta gaattttaaa aacaaaattt tgtaccactt
     2521 caaaaactct ttgaattgcc tgtttgtctt ctattctcat taaagaaata atcaaagcag
     2581 taattatagc aataactaaa acttgtatgg tttttccttc tgtaaaaggt gtgataatat
     2641 cagtaggcat agcatctttt aaaatatgca taatctcaga gctcgcactt acttctgtgg
     2701 tttgagaaat gtatttttga acgctttttg tatcaagttg acttggatca agattcattc
     2761 catggcctgg ttgcataaca tttgccataa aaatacctat agcaagtgct aaagtactta
     2821 caacttcaaa gtaaataacc gctttagcac caatgctacc tacttttttt aaactttcaa
     2881 gactaatgat gcccaaaacc aaagtaacaa aaataatagg gcctataaga acctttaaag
     2941 cacctataaa ataatcaact cctggtttgc tagcaatggc taattcttta tctgtatagc
     3001 caagtacaat acctgtaata atgcctataa tcacccaaaa tccaagactt ttgataatac
     3061 gtttatataa aggcggtttt ctttcagcta aagtttgact taaagtttcc aagtttattc
     3121 actccttttg atctttgtaa aatataattt taacaatgtg tattgtaaat tttaacaaaa
     3181 aaacaaatct agaaatactt tcttttatat gatatg
//
LOCUS       DARGEY010000133         3215 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.133, whole genome shotgun sequence.
ACCESSION   DARGEY010000133 DARGEY010000000
VERSION     DARGEY010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3215)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3215)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3215
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.133"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..641
                     /locus_tag="SF008_001601"
     CDS             <1..641
                     /locus_tag="SF008_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG8233841.1"
                     /translation="NKDIKQNFFDQKLNFENLNKTQVVQNKENNANFNNNTTNKETFT
                     QEQTKTHSENVDKNSLDELNSLVKDLNKVTQNNARNITPKETLQHFSQDLKEAVDQYK
                     APITKLSITLNPNNLGEVEVTLIQRGNNLHINFNSNTNAMNLFIQNQAEFKNSLVNMG
                     FTGLEMNFSDQGKREQNQNQGKNRSGYGFKDALDGKNESEKVNLELVLAKYF"
     gene            694..1578
                     /locus_tag="SF008_001602"
     CDS             694..1578
                     /locus_tag="SF008_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HEG8233842.1"
                     /translation="MISSSDWNLNTTATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDAKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGDKEEKA"
     gene            1582..>3215
                     /locus_tag="SF008_001603"
     CDS             1582..>3215
                     /locus_tag="SF008_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEG8233843.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKQGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMK"
BASE COUNT         1190 a          453 c          619 g          953 t
ORIGIN      
        1 aaaataaaga tataaaacaa aatttctttg atcaaaaatt aaattttgaa aatttaaata
       61 aaactcaagt agttcaaaac aaagagaata atgcaaattt taataacaat actactaata
      121 aagaaacttt tactcaagag caaacaaaaa cgcacagtga aaatgtagat aaaaatagtt
      181 tagatgagtt aaattcttta gtcaaagact taaataaagt aacacaaaac aatgctcgca
      241 atatcactcc taaagagact ttgcaacatt tttcacaaga tttaaaagag gctgtagatc
      301 aatataaagc gcctattact aaacttagca tcactctaaa tcctaataat cttggagaag
      361 tggaggtaac tttgatacaa agaggcaata accttcatat caatttcaac tccaatacca
      421 atgcaatgaa tttgtttatc caaaatcaag ccgagtttaa aaattctctt gtaaatatgg
      481 gatttactgg acttgaaatg aattttagtg atcaaggtaa aagagagcaa aatcaaaatc
      541 aaggaaaaaa tcgtagtgga tatggtttta aagatgcttt agatggaaaa aatgaaagtg
      601 aaaaagtcaa tctagagctt gttttagcga agtattttta attggaacac ttattgctta
      661 aataataaaa aactaaataa aaaggagttt ataatgatat catcatcgga ttggaattta
      721 aataccactg ctacaacttc aggtactact tcttcaggaa gtactagtgg aacaactaga
      781 acagattcaa gcagtagctc aggaatagtg agcaatccaa acgctacctt agataaggat
      841 gcgtttttaa aacttctttt gatagagctt caacatcaag atccaacaga tcctatggat
      901 agcgataaaa tgcttactca aacttcgcag cttagcgcac ttgaaatgca gcaaaatacc
      961 aatacaacta tgcaaaaaat ggttgaaact atgcaaaagc tttctgattc ttttagtaca
     1021 agtatgagta cttcagcttt aggggctatt ggtaaaatgg caactgtttc agataataaa
     1081 atcaaactta caggtgcaga tgagcttatc gctcttaaaa tgtatttgcc tgaagattct
     1141 gatgaaaacg gtgttacgct agaaatttat gatagcaata ataaacttgt tttcagtgaa
     1201 aaaagcgatg ctaaatctat ttctcaaggt ttatttacta tggagtggcc aggaagaaat
     1261 aacgatgggg tttatgcagg tgatggtgag tacactgtta aaatggttta taataataaa
     1321 aatggtgaaa aaatcactgc aaattacgga acttatccta tcgaaggtgt tgtttttaaa
     1381 gatggtgttg cctatgcaaa aatggctgga caagaagttc cttttgatgc aatacaagaa
     1441 ataacagatt ataagcttgg ttcatcttca tctactggag gaagcggttc aagtggagac
     1501 tcaagtggtg gttcaagcga tggagattct tctgggtctg gatctacaga agatggcgac
     1561 aaagaggaaa aggcataagc catgatgaat tcattttata atgggatttc tggagtaaaa
     1621 agcaatagct ttggtattga tatcactgct aataacatag caaatgtcaa taccacgggc
     1681 tttaaatact ctgatgctca atttaaagat attttttata ctaccataac aacccaatca
     1741 accaaccctg ctcaaggtgg ttatggtagc ggtgcagcat cttctcaagt tgttttcgaa
     1801 cagggttctc ctgttgcaag tgatggcgaa tttgatgtgg ctttgcaagg aaaaggattt
     1861 tttggggttt taggggctga tggcaatgct tactatacta gaaatggatc atttagaaga
     1921 gatgccaatg gatatttggt agattcttat ggaaattttg ttttaggaac aatgaatcct
     1981 gcttttactg gtattaacta tagcgataga gttgctgggc ttatggggga ttatcttaac
     2041 acaggaactc cggtaaataa tggttttact gtaaattcaa ataattcttt cagtataggc
     2101 acaaccgctt ctcaaggggc tattaaagta cctgtgaata tgtatttacc tcctcaagta
     2161 actcaaaatg taaaatggag tggaagttta aatactaaca caacaacaga agtagttaaa
     2221 gtagatcttg atcctagtaa atttaacatt acaaaaactg aagatggaaa atatgtagtt
     2281 agtggtagtg ttagcaaaga agatgtgttt agtgctaaag cgggtgatag gattatttta
     2341 aatttcactg atgataatgg cgtaaaaaca agctttgaag cgactttaga tgaaaatcta
     2401 aattttaaaa gtaacgagct tgatttaaaa ggattggatg aaaatagcat caagcttgat
     2461 acagctcaaa tttcaacaga gcaacaaaaa gccaataaag atattttaga atcccctatt
     2521 tataatgcag atggaagtaa aagcacttta agggttacac ttgaaagagt tttaccgcaa
     2581 gaaggcgata atatacaata taaagctatt gcacaaattt atgattctaa tggcaatgcc
     2641 gtaggcaatc cgactgaagg aaatatggtt tttgataaaa atggtgcttt gcttcaaaac
     2701 aatattacaa gcattgcaaa tccaaatggt ggaacaatta atattgattt aggttctcct
     2761 tatgatgcta acaagcctgg ttcgggttat agtgggattt atattaaaca aggcgtcgaa
     2821 aaaaatgtag ttacacaaca agatggtgta gctgaagggt tttttgaaca atataatata
     2881 tccgatgatg gaagtattgt tgcgcaattt agcaatggta aaaatgctat agttggaaag
     2941 cttgctttat ataattttat caatgagcaa ggattagttg ctatgggaga taatattttt
     3001 gcagcaacgg caaatagcgg tgatgcaagt tttattatga aagatggtca agttgttaat
     3061 acagctaaat ttaaaggcgg attcttagaa caatcaaatg ttgatttaag cgcagagctt
     3121 tcaaacctta tcgtaactca aaaagctttt gatgcaagct caaaaagtat cactacaagt
     3181 gatcagatga tacaaaaagc cattaatatg aaaag
//
LOCUS       DARGEY010000134         3212 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.134, whole genome shotgun sequence.
ACCESSION   DARGEY010000134 DARGEY010000000
VERSION     DARGEY010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3212)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3212)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3212
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.134"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1328
                     /gene="cas9"
                     /locus_tag="SF008_001604"
     CDS             <1..1328
                     /gene="cas9"
                     /locus_tag="SF008_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344900.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HEG8233844.1"
                     /translation="IKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLN
                     KTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKDFKDRNLNDTRYIAR
                     LVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSTKDRNN
                     HLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKKKFFEPFSG
                     FRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRK
                     VNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWIL
                     MDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTSSTVSLIVSKHDNKFETLSKNQ
                     KILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK"
     gene            1325..2215
                     /gene="cas1"
                     /locus_tag="SF008_001605"
     CDS             1325..2215
                     /gene="cas1"
                     /locus_tag="SF008_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HEG8233845.1"
                     /translation="MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSA
                     QKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            2208..2639
                     /gene="cas2"
                     /locus_tag="SF008_001606"
     CDS             2208..2639
                     /gene="cas2"
                     /locus_tag="SF008_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HEG8233846.1"
                     /translation="MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFS
                     VYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNE
                     TNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF"
     repeat_region   2784..3211
                     /inference="COORDINATES: alignment:crt:1.2"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=2784..2816
                     /rpt_unit_seq="attttaccataaagaaatttaaaaagggactaa"
BASE COUNT         1287 a          391 c          524 g         1010 t
ORIGIN      
        1 agattaaaat tagtgatttg caagatgaaa aaatgcttga aattgaccat atttaccctt
       61 attctagaag ttttgatgat tcttatatga ataaggtttt agtttttacc aagcaaaatc
      121 aagaaaaact taataaaacc ccctttgaag cctttggcaa tgatagtgca aaatggcaga
      181 aaattgaagt tttagcaaaa aatttaccta ctaaaaagca aaaaagaatt ttagataaaa
      241 attacaaaga caaagagcaa aaagacttta aagatagaaa tctaaacgat actcgctaca
      301 tcgcaaggct tgttttaaac tacactaaag attatttaga ttttttacct ttaagcgatg
      361 atgaaaatac aaagttaaac gacacacaaa aaggctcaaa agtgcatgta gaagcaaaaa
      421 gcggtatgct tacatcggct ttaagacaca cttggggctt tagcactaag gatagaaata
      481 accatcttca tcacgccatc gatgcagtaa ttattgctta tgcaaacaac tctatcgtaa
      541 aggctttttc agattttaaa aaagagcaag aaagcaacag tgcagaactt tatgcaaaaa
      601 aaattagtga attagattat aaaaacaaaa agaagttttt tgagcctttt agtggtttta
      661 ggcaaaaggt tttagataaa attgatgaaa tttttgtctc aaaacctgag agaaaaaagc
      721 caagtggagc tttacatgaa gaaacattta gaaaagaaga agaattctat caatcatacg
      781 gcggaaaaga aggagtttta aaagccctag agcttggtaa aatccgcaaa gtaaatggta
      841 aaatagttaa aaatggcgat atgtttagag tggatatttt taaacacaaa aagacaaata
      901 aattttatgc tgtgccaatt tatactatgg attttgcttt aaaagtatta ccaaataaag
      961 ctgtagcacg aagtaaaaaa ggtgagataa aagactggat tttaatggat gaaaattatg
     1021 agttttgctt ttctttatac aaagatagtt tgattttaat tcaaactaaa gatatgcaag
     1081 agccagaatt tgtttattat aatgctttta caagctctac tgttagtttg attgtttcaa
     1141 aacacgataa taaatttgaa acgctaagca aaaatcaaaa aatattgttt aaaaatgcaa
     1201 atgaaaaaga agtaatcgca aaaagcatag gaattcaaaa tctaaaagta tttgaaaaat
     1261 acatagtttc agcacttggg gaagttacaa aggctgagtt tagacaaaga gaagatttta
     1321 aaaaatgagt tacgatgaag cttttaaaac actgcttatt agctctaatg ccaagctaaa
     1381 tttagagcta aatcatcttg tgattaagca agatgaaaat atagccaaat tgtttttaaa
     1441 agatataaat atcatcgttt tagaaagctt acaaataagc attagttccg cactttttaa
     1501 tgcctttgca aagtataaaa ttatcttatt aacctgcgat gaaactcata gtataaatgg
     1561 cgtttttact ccttttttag ggcattttca aagtgcaaaa atcgcaaaag agcaaatgaa
     1621 tgtaagtgct caaaaaaagg ctattttatg gcaaaaaatc attaaaaata aaatcctaaa
     1681 tcaagccttt atcttaaaaa aacacaataa aatagagcaa agcaatgagc ttataaattt
     1741 ggctaaaaaa gtaagcttaa atgatagtaa aaatattgaa gctgttgcgg cggcgcttta
     1801 ttttaaaact ttgtttggta cttctttttc aagagatgag ctttgctttg aaaattctgc
     1861 tttaaattat ggctatgcaa tcattagggc ttgtattatt agagcagttt gcataagtgg
     1921 gcttttgcct tggcttggca taaagcacga taatatttat aattcttttg cgctttgtga
     1981 tgatttgata gaagtgttta gggctagtgt tgatgattgt gttttaaagc ttaagggtga
     2041 aagtgagttt ttaagcaaag atgacaaaag agcgttgatt ggcaatttac aaagtaaaat
     2101 caattttgat gggcaaaatt atcctttaaa cagagcgata aatcattatg tggcaaattt
     2161 taaaaatgct ttattgtatg aagatgaact aaagatagtg aaatttgatg attgaagata
     2221 aatttatgcg tgtgcttttg atgtttgatg tgccaactaa aagtaaaaaa gagcaaaaac
     2281 tagcaagtaa atttagaaat aatcttataa aattaggtta ttttatgctg caatttagtg
     2341 tttatatgcg tatttgcaag ggtttaagtt ctgcaaaaag ttctattgaa aatgtaaaaa
     2401 agattttgcc accttatgga aatgtaaggg ctttaatcat cactgaaaag caatttgata
     2461 aaatggagct tttgcttggt ggcatagttt ttaacgaaaa agttaataac gaaaccaatt
     2521 taacgctttt tgatatagat agtcatggag aatttaaata taaaaattca aataatgaag
     2581 aaattcaaat aaacaaaaaa caagaaaaat atcatcagca aaatttattt gaattttaaa
     2641 agcggtttta ggggattgta accccgcaga gtcccgcaaa ctctttattt tagtcccttt
     2701 ttaaatttct tatgagatta tagcataatt tttgctattt ttcatgaaaa aaccccgaaa
     2761 ttttcattat ctggtaaata tctattttac cataaagaaa tttaaaaagg gactaaaaca
     2821 atacatttaa atgggataga tggaaatcaa ttttaccata aagaaattta aaaagggact
     2881 aaaactattc caaataattt cctctttaaa ttgaatttta ccataaagaa atttaaaaag
     2941 ggactaaaac tatattaata gagttaatga aaatttagct attttaccat aaagaaattt
     3001 aaaaagggac taaaactctc ttgctatagt tttagctcta cgatttattt taccataaag
     3061 aaatttaaaa agggactaaa acttacttgc tggtatgaat gttaatttca atattttacc
     3121 ataaagaaat ttaaaaaggg actaaaacag cattaaacaa aaatccacac attagtttat
     3181 tttaccataa agaaatttaa aaagggacta aa
//
LOCUS       DARGEY010000135         3196 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.135, whole genome shotgun sequence.
ACCESSION   DARGEY010000135 DARGEY010000000
VERSION     DARGEY010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3196)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3196)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3196
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.135"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            630..3196
                     /locus_tag="SF008_001607"
                     /pseudo
     CDS             630..3196
                     /locus_tag="SF008_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807409.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
BASE COUNT         1079 a          503 c          617 g          997 t
ORIGIN      
        1 aaatataaaa aaatatagaa atttaataga aagaagagaa gtttagttaa aagtttgttt
       61 ggtgcaagcc acaagggagt ttcgcccctt aagaaaaggg gcaaggctaa taagccttga
      121 cagtaattat acaaattagt ataattataa gtacgaaacg aaacatagtt tcaccccctt
      181 tctagggcgt gattttgcca cagggttgca gccttgtggc aaaaccctta atgcaattat
      241 accaaacaaa ctctttaact tctttaatat agtccatgaa aagattttac ttgttattcc
      301 ttagcacttt gttttttgca ccttcatttt tatttggtgc aaatattaaa aatataaaat
      361 aatatagaaa ttcaatagaa gaagagaagc ttagttaaaa gtttgtttgg tgtaagccaa
      421 agggattgtt ctaaaccctg caaaagcagg ggatactcaa taagccttga catagcaaag
      481 cattaagagt ataattatta gaacaatttt gagcattaaa ctcacctccc ttctgggtgg
      541 taaattaacg ctaaagggtg gcagcccttt ggcgttgcac ccttttataa ttataccaaa
      601 taaactcttt aacttcttta atatagtcca tgaaaagatt ttactttttg ttttttagca
      661 ctttgttttt tgcaccttca tttttgtttg gtgctacaaa catagctaat ggaaatctaa
      721 tctatacttg gggttatggc gatgtgatga atgaaatcat gcaggcggtt aaaggtataa
      781 ccactgaaac agattatatc gttaatgcag ccttggctat ttcattattg cttttcagta
      841 tcaaaaaagc aatggatgga caaacaagtc ctgtgtttga atttggaaaa atgtttatgc
      901 tttttgctgt agtgtggtac atgtttttaa aagcaccaaa tgacaataat caccgcttca
      961 tgattcacga tgaagtcact agcaaagatt atgtcatttc tcaaattcct ataggtatag
     1021 gaaaaagctt tgcattgatg acgcaatttg agaaggttat cctagaagct atggaaaaac
     1081 atttttcaac tccacaatct acaaattttt ctaatgcagg tttaggtttt tcacttcaag
     1141 tgatgagtac tttgccaagc ttaaagcttt cggctattga tgcaactttg caaaaaaata
     1201 ttgattttta ttttagaaac tgcgtttcag taggtatctt gcttaatcaa caaggtagaa
     1261 atctttttca aaactctgat aatttaatac aagatctttt cacaaacata ggcaatggct
     1321 ctcagcttac tcctttgttt gaaaataaca ataatattga aaaacaaagt gttgtgcctt
     1381 gttctgatgc aggtcctcaa atcgttgaaa tgattaaaaa cgatacagat gaagctatga
     1441 agattcatgc tgctttgctt ggtatggcga atgatatggc aaattatgag caaaagttct
     1501 taggcgctgc acaaatctat aacgaacaag ctgtaagtgc tagatcttat ttgcaacaat
     1561 ccatgataat gcttgcttct caagatgcaa tcattaatac cgctaaatca gtaggtttaa
     1621 atcctgcttc tgtggctgca aatactgctt atgcggatca gcaattttat gcaagtatgc
     1681 aagcacaagg acacttggca caaacttatt tgcctttagc taaagcttat ttaacagcta
     1741 ttatcatagg tttgtcttgg cttgttgctt tgctttctat tgtgtttggc tcttatgctc
     1801 atattaagat gttttttact ctatgtattt ggatagtact ttggactcct atactttgta
     1861 ttattaattt tataaatgat tttaatctta tgaatgttgc acaggtgata acaggtggaa
     1921 aagcagcttt aagcttagga gataacattc ttatattcaa agaagtagca aatagatcaa
     1981 atttcatgaa ttatcttgta atgagtactc ctgttttagc ttatgctata gctaaagcaa
     2041 gtgaacaagg atttgtaact tttgcttctg gattatctca agctctaaca ggtgcttcaa
     2101 gagctgctgg aagctttgca aatcagcaag ccttatctac acaaactagc attgctgctc
     2161 ctagaggaga tgaagtttgg gcgatgaatg caggggtgat gagcttgcaa agtgctataa
     2221 gtgcaggggg tggtagattt agcatgtcta gtataacagg gggtggaaca acagctagag
     2281 atgtgaatac aggtacaagt tttgctttgg gaaatcatgg tgaaatttct aatatgaata
     2341 ggacttgatg caaaacacgc acaaagcgaa actcaaacta gacaagattc tcttgctaat
     2401 tctattgccg atactcacaa aacaggcatt aatcacggta ttacctctga ttatcttaga
     2461 aatcatggtg caggagtaga agatactaaa gcaattgaga aagcagaaac gaaagcttta
     2521 aaagaaacta tgaatgaagc attaagcgat aaatctagct tctctgaaac agacaaaaaa
     2581 gctttagaag gaagtattag cgcttatgct agtggctcag cagggattga aatctttgga
     2641 aatggtggaa aaataggtgg agaaattaaa gggacagctt caataggcac aggctcaact
     2701 gaaacacaag aatattcaag aagcctaagt aaagaagggt aggctgcatt tgataaaatg
     2761 tatgctgaaa aacttggcaa tatcattaaa tctaatgata gtgtggcttc tgcttattct
     2821 aatgctctat ctacaagcac aggtagtgaa tttgctgatg ccaaacaaaa agcacattct
     2881 tatagtgaag caagtcaata cagtgaagct atacaggcaa gtaattttac ctaatatggc
     2941 tgaaaattac attgctgaaa ataatttggg tggaactaga gaacaacaag ttgctgctgc
     3001 agctaaaggg ttagaaaact tagccgcaag gggagatttg caaggcttgt tgcattatgc
     3061 taatatgaat acagctaagc caaatgctga tagaaatcat gatgttagca ataaatctta
     3121 ttacagtcct tcaagtgtag gagctaataa tgctcataat aatgatgcag tagctaatca
     3181 aaataagtta aacagc
//
LOCUS       DARGEY010000136         2974 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.136, whole genome shotgun sequence.
ACCESSION   DARGEY010000136 DARGEY010000000
VERSION     DARGEY010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2974)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2974)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2974
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.136"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            125..1906
                     /locus_tag="SF008_001608"
     CDS             125..1906
                     /locus_tag="SF008_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HEG8233847.1"
                     /translation="MKRRLFLKGSALGSMVAFFASSNLSAAMLKDKDLLGFKAVSAST
                     QDKVIVPQGYEAKVLISWGDPLFSKAKPYDENKIIDMNAVKNAHLVFGDDNDGMSFFP
                     LSKNRGILAVNNEYINPEIMFNHHGKNLSKEDILYEQASVGVSILEIEKKGDDWTVVL
                     DSKYNRRIDANTKMQVSGAAKKEVLKNEKFVHGTFANCANGQTPWGTYITCEENFDDF
                     FGSLDENLEFNDSLKRYGFNKTSLYGWEKFDERFDLAKNIDEANRFGWIVEINPFDAQ
                     STPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFVSKHKYKKGADTSKI
                     LDEGILYVGQFNGNVGDFKGQGKWIALEYGKNSLNEKNGFKSQAQVLINTRLAASIVG
                     ATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANPRTKNVYGQILKWMPKNSHK
                     DDDFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KDEYEGMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTIMFVGIQHPGEGLK
                     GSTFPYGKTPRSSVIMIRKLDGGVIGS"
     gene            complement(1944..2882)
                     /gene="trxB"
                     /locus_tag="SF008_001609"
     CDS             complement(1944..2882)
                     /gene="trxB"
                     /locus_tag="SF008_001609"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEG8233848.1"
                     /translation="MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTE
                     LAKAVIVCTGSAPKRAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKVYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVTGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDGKFLCNMEEGGQVSVDLKMQTSIAGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
BASE COUNT         1055 a          469 c          490 g          960 t
ORIGIN      
        1 atacctagta aaaaactagg tataaatttt tccttcaatt taaatttttc atcaaagttt
       61 ctaaaaagtt tccaaatatt tttatacttc cattgtttta aattttaata tggggtaaaa
      121 acaaatgaaa agaagattgt ttttaaaagg ttcagcttta ggttctatgg tggctttttt
      181 tgcaagttca aatttaagtg ctgctatgct taaggataag gatttgctag gttttaaagc
      241 tgttagtgca agcacacaag ataaagttat agtaccacaa ggttatgaag caaaggtttt
      301 aatttcttgg ggtgatccac tttttagtaa agcaaaacct tatgatgaaa ataaaatcat
      361 cgacatgaat gcagttaaaa atgctcattt ggtttttgga gatgacaatg atggtatgag
      421 tttttttcca ctttcaaaaa acagaggaat tttagccgtt aataatgaat atataaatcc
      481 tgaaatcatg tttaatcatc atggtaaaaa tttaagcaaa gaagatattt tatatgagca
      541 agccagtgtg ggtgtgagta tcttagaaat cgaaaaaaaa ggtgatgatt ggactgtggt
      601 tttagactct aagtataacc gcagaatcga tgcaaacact aaaatgcaag taagtggagc
      661 agctaaaaaa gaagttttaa aaaatgaaaa atttgttcat ggaacttttg caaattgtgc
      721 aaatggacaa acaccttggg gaacttatat cacctgtgaa gaaaattttg atgatttttt
      781 tggaagttta gatgaaaatc tagaatttaa tgactctctt aaacgctatg gatttaacaa
      841 aactagtctt tatggatggg aaaaatttga tgaaagattt gatttagcta aaaatatcga
      901 tgaagctaat cgttttggtt ggatagtgga aatcaatcct tttgatgcac aaagcacacc
      961 tgttaaaaga acttctttag ggcgttttaa acatgaaaat gcagaaatta tcgtagaaaa
     1021 agatggttct gttatagttt atatgggtga tgatgagatg aatgaattta tttataaatt
     1081 tgttagcaaa cataaataca aaaaaggtgc tgatacaagt aaaattttag atgaaggtat
     1141 tttgtatgta ggacagttta acggcaatgt gggagatttt aaaggacagg gaaaatggat
     1201 agctttagaa tatggcaaaa acagcttaaa tgaaaaaaat ggttttaagt ctcaagctca
     1261 agtactcatc aatacgcgtc ttgctgcaag cattgtaggt gcaactccta tggatagatg
     1321 tgaatggata gcaagtcata aacaaagtgg ttctaaagag gtatttgcaa cactaacgaa
     1381 caacaaaaat cgccaagaac ctaatgcagc aaatccaagg actaaaaatg tttatggaca
     1441 aattttaaaa tggatgccaa aaaattctca taaagacgat gattttactt gggaaatttt
     1501 tgctcttgct ggaaatcctg ataaccaaca aggcttatat aaaggctcaa ataatattac
     1561 aagtgaaaat aaattcaatt ctcctgatgg acttaaattt gatagagatg gaagactttg
     1621 gatacaaaca gatggatctt attctaataa agatgagtac gaaggtatgg gaaataactg
     1681 catgctagca gcaaatccaa aaacagggga aatcagacgc tttttaacag ggcctattgc
     1741 ttgtgaatta acagggattg cttttagtga ggattatact ataatgtttg taggcataca
     1801 acatccagga gaaggtttaa aaggtagtac ttttccttat ggaaaaacac caagatcgag
     1861 tgtaataatg ataagaaaac ttgatggtgg agtgatagga agctaaataa aaataaagtt
     1921 gcttttagca actttataaa atcttaatgc aagctttcta tataagccat agcacttaat
     1981 gcagctacag ctccatcacc tgcagcacaa atcacttgct taggtgcatc ttttctaaga
     2041 tctcctgcgg caaaaagtcc agcaatacta gtttgcattt taagatcaac acttacttgc
     2101 ccaccttctt ccatattgca taaaaactta ccatcatctt gttttaaaat ttcatttctt
     2161 acattaagac caacaaaagt aaaaattcct ggaacattta aatctctaat actaccatct
     2221 tttaatttta cttttacccc agtaacaccc attttatcac catatacttc atctacactt
     2281 gcactagtaa tgagttctat tttttcattt ttcttaactt tttctactgt agatggagcc
     2341 gctctaaact catctctgcg gtggataaga taaaccttag aacaaatatt tgctagatac
     2401 aaggcttctt ctaaagccgt atctccacca cctaaaactg caacttcttt atttttataa
     2461 aaaaatccat cacaagttgc acaagtactt acaccttttc caaaaaattc atcttcgcct
     2521 ttaaaacctg ctctttttgg agccgagcct gtgcaaacta tcacagcttt agcaagttct
     2581 gttttaccac cttctaattt gatggtaaaa cttccatcac tattttttaa aatttgttct
     2641 actccaacca tttcatgttt taaaccaaaa cgcatgcatt gttcactcca aggagccata
     2701 aaagaaattc catccataac ttgggctaca cctggataat tttctatctc agaacttgag
     2761 gtaatttgtc caccaggcat acctttttca aacattacta catttttaag tccacctcta
     2821 gttgcataaa gtccggcact aagtccagca ggacctccac ctatgattgc tacatctaac
     2881 atttatattt cctttatatt gaattttatt attaataatg atataaaaat tattcttaat
     2941 agtagttaat aaaaattatt atttagtata aatt
//
LOCUS       DARGEY010000137         2921 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.137, whole genome shotgun sequence.
ACCESSION   DARGEY010000137 DARGEY010000000
VERSION     DARGEY010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2921
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.137"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            29..259
                     /locus_tag="SF008_001610"
     CDS             29..259
                     /locus_tag="SF008_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233849.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            249..491
                     /locus_tag="SF008_001611"
     CDS             249..491
                     /locus_tag="SF008_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233850.1"
                     /translation="MADNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            485..925
                     /locus_tag="SF008_001612"
                     /pseudo
     CDS             485..925
                     /locus_tag="SF008_001612"
                     /inference="COORDINATES: protein motif:HMM:NF019575.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
     gene            907..2760
                     /locus_tag="SF008_001613"
     CDS             907..2760
                     /locus_tag="SF008_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEG8233851.1"
                     /translation="MQRSDIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKTKKN
                     LKAIVLKECQKPDFKTVEIKEITGYFLTPLQFELANFIVYYYASKLGFVLGFFETSPK
                     YECHKMFFKDTPKLSNQQQNALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMQKRLEVYFKDNFFLWHSKISKKKKQEYLERFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIQVVLGSATPSLTS
                     FYKQKSFRLKGTFFESKKHFLYDENELGITPMLLSELEKSLKHQKQAIVFLPTRANFR
                     QIICKDCGETIKCPFCSIAMSMHKKKNVLKCHYCNYTSLIEQNCPSCKGEMLEARKMG
                     TAELLELLQNALPLAKIAKFDSDEITSVKKLNTILKNFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFERY
                     IENYDAFLKDELENRKDLYPPFKRLLRVLIEDKDQKSAQKLCEKFASQFRNIKQVELV
                     GYGICGVEMLYGKYRFYLLLRSENHKALVAIENYILQFKNASADIDPIDFV"
     gene            complement(2770..>2921)
                     /locus_tag="SF008_001614"
     CDS             complement(2770..>2921)
                     /locus_tag="SF008_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG8233852.1"
                     /translation="IDYFIKNKSLIYTFFNIFENELNHLKQTHPHIIDSWKYYKEFEK
                     IYKDK"
BASE COUNT         1077 a          326 c          509 g         1009 t
ORIGIN      
        1 attacaaatt ttttaagaag gcaaaaatat gtttgatgaa aaaataatca atactatgac
       61 agataaagta aatgaattaa ttgaaaagta taacgaagtt tgtgaagcca atgaggcttt
      121 aagaaatgag cttgtaagcg ttaaagcaca aaatgaagca aaaagtaatc aaattatgcg
      181 tttagaagaa gaacttaaat ctcgcaatat agaaagcgaa gatatttata agaaaataga
      241 ggctgttctt ggcagataat ctaaaacaag tcattgttaa tgttaatgca aaagatttca
      301 ttgttaagtg cagtgaagaa tttgcaaatt ttttagaaga tgatatcgct ttgatttctg
      361 gcggtactaa aaaaatagaa cttaaacgct ttgtagatgc gtttgttaaa aaaagttatg
      421 aaaattatat tttagaaaga gaacttaaga aactaataaa agcaatcaat gaagaactcc
      481 cgacaaaatg aataaagctt ttactctgct tgagcttgtt tttgtgattt tgattttggg
      541 aattttgtca agcttatctt tatcttttat caatactaca aaagatgagg ttaaaatttt
      601 aaaattaaaa atggactatg aaatgctaag ctcagctctt gctttaatgc gtagtcaaat
      661 gagacttaaa aatttaaatt ttccagaaat tttagataat gcgcaaaaca atcaagccaa
      721 agaaaaactc ttttattgtt taaatgattg tgattattct ttgcttgata cacctattta
      781 ttctgatttt aaatcttgga taaaaatagg taaaaatcac tatagatttg cattaaatgc
      841 taaagagatg gttgaattta tttatgattc taaagaaggt ttgttaaagt gtataggaag
      901 ttctagatgc aaagatctga tataagatat tatgaacttg caatttgtgg tttgtatttg
      961 gataatttaa cttttcatag ttttgatgaa atcaaacctt taacacaagt attagtggat
     1021 ttaaaaacta aaaaaaacct taaagctatc gtgcttaaag aatgtcaaaa acctgatttt
     1081 aaaaccgtag aaattaaaga aattacaggg tattttctaa ctcctttgca gtttgaattg
     1141 gcaaatttta ttgtttatta ttatgcttca aaacttggtt ttgttttggg tttttttgaa
     1201 actagtccta agtatgaatg tcacaaaatg ttttttaaag atactcctaa actaagcaat
     1261 caacaacaaa atgccttaag ttttcttcaa aaagaaaata attccttgct ttttgctgat
     1321 acgggtagtg gcaagactga aatttatatt tctttgataa aagagtgttt agaacagggt
     1381 aagcaagctt tgcttttgat gccagaaatc gcacttactc cacaaatgca aaagcgttta
     1441 gaagtgtatt ttaaggataa ttttttcctg tggcattcta aaatttcaaa gaaaaaaaag
     1501 caagaatatt tagagcgttt ttgcaaggga gaagtgcttt tagtagcggg tgcaagatcg
     1561 gctttgtttt taccttttag aaatttagga cttattgtag tagatgaaga acatgataat
     1621 tcttataagg cttctaacca gccttttatc aatgcaagag atttagcact ttttttgggt
     1681 caaaaaaata atattcaagt ggttttaggt tctgcaaccc catctttaac gagcttttac
     1741 aaacaaaaaa gttttagatt aaaaggaact ttttttgaga gtaaaaaaca ttttttatat
     1801 gatgaaaatg agcttggtat aacgcctatg cttttaagtg aattagaaaa aagtttaaaa
     1861 catcaaaagc aagctatagt gtttttacct acaagggcta attttaggca aatcatttgt
     1921 aaggattgcg gagaaacgat aaaatgtcct ttttgttcta ttgctatgag tatgcataaa
     1981 aagaaaaatg ttttaaaatg tcattattgt aattatactt ctttaataga gcaaaattgt
     2041 ccaagttgca aaggagaaat gttagaagct agaaaaatgg ggactgctga acttttagag
     2101 cttttgcaaa atgctttgcc tttagcaaaa atagcaaaat ttgatagcga tgaaatcaca
     2161 agcgttaaaa agcttaatac tattttaaaa aactttaatg aaaataagat cgatatactt
     2221 attggcactt ctatgcttgc taaaggacat gattatcata gtgtggattt gagtgtgatt
     2281 ttagggcttg atgaatattt gttgcgtcct agttttagag cgagtgaaga aactttagct
     2341 ttagctatgc aagttgcagg cagggcaggg cgtaaaggcg aagcaagagt acttttgcaa
     2401 acaaaaaata gagctttttt tgaaaggtat atagagaatt atgatgcttt tttaaaagat
     2461 gagttagaaa atagaaaaga tctttacccc ccatttaaac gccttttaag agttcttata
     2521 gaagataaag atcaaaaaag tgcacaaaaa ctttgtgaaa aatttgcttc tcaatttaga
     2581 aatatcaaac aggtagaatt ggtaggctat ggaatttgtg gagttgaaat gctgtatgga
     2641 aaatatcgtt tttatttgtt gcttagaagt gaaaatcata aagctttagt ggcaattgaa
     2701 aattatattt tgcaatttaa aaatgcaagt gcggatattg atcctattga ttttgtgtaa
     2761 gtgatatgat tatttatctt tgtatatttt ttcaaattct ttataatatt tccaagaatc
     2821 aataatatga ggatgtgttt gttttaaatg atttagttca ttttcaaata tattaaaaaa
     2881 agtgtaaata agtgatttat tttttataaa ataatctatt a
//
LOCUS       DARGEY010000138         2843 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.138, whole genome shotgun sequence.
ACCESSION   DARGEY010000138 DARGEY010000000
VERSION     DARGEY010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2843)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2843)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2843
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.138"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..164)
                     /locus_tag="SF008_001615"
     CDS             complement(<1..164)
                     /locus_tag="SF008_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEG8233853.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGE
                     GSDNIFLKKN"
     gene            complement(173..574)
                     /locus_tag="SF008_001616"
     CDS             complement(173..574)
                     /locus_tag="SF008_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HEG8233854.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSLIYAN
                     GPGSYMGIKISYVSLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEICLE
                     QNIPVEFFLPKNLQELKLNNDNLPFYFLDAI"
     gene            complement(613..1497)
                     /locus_tag="SF008_001617"
     CDS             complement(613..1497)
                     /locus_tag="SF008_001617"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HEG8233855.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDERGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDAPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYTSYAGSHRLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            complement(1497..>2843)
                     /locus_tag="SF008_001618"
     CDS             complement(1497..>2843)
                     /locus_tag="SF008_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG8233856.1"
                     /translation="LSVLILVLIAILIFFISRLSIFEKNPPQILMPDVVYTDLKKPIL
                     VHIKDDESSIKNVQIILHKDDNTSAMVIADEKISNLKDITLQVALPKFGYKENVKSFV
                     LEVIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAGAVVFKADDA
                     NLDKVYIETNKGKIFKATSYVKEGYYAALIAWDARDEEFRAFVIATDKAGNISKERIR
                     YYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNETLRNSNEKL
                     IHEITSKVPEEKIDNFDLNLFLPLKNGMKVADFADHRYYSYNGQFVSDSYHMGLDLAS
                     VAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSSKNVDLDEMINKQSI
                     IGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNDGKKIILGKN"
BASE COUNT          964 a          527 c          319 g         1033 t
ORIGIN      
        1 ttgttttttt taagaaaaat attatcactt ccctcgcctc caatactaat gctaaaaaca
       61 cctgattttt ggatttgagt ttcattaaaa agctttaaac taagtcctaa acaatcaaaa
      121 cctggcccta aattcgcact cgtagctgga actaaaattt tcaaatttca tcctaaattg
      181 catctaaaaa ataaaaggga agattatcat tatttagttt aagctcttgt aaattttttg
      241 gtaaaaaaaa ctctactggg atattttgct ctaaacaaat ttcaccttcc ttatatacaa
      301 aacaaaaatt tttatttgca cttatgggtt tatagccatt taattcaaaa gcactcaccg
      361 caaataaagg aatatttttt actatactta aagtactcaa acttacataa gaaattttaa
      421 tccccatata agaacctgga ccattagcat agattaaact tgtaaaatca tattctttaa
      481 gcaattcatc taaaattttt ggtaaaaatt cgcttgcttt ttcttcactt ttataagttt
      541 ttataagttt atcatcttga taaattccga tcattaaagg cttagataaa gtattaagta
      601 aaagagaagt ttttatgcaa ataccttttc ataagctttt tgggttgttt tttcaaggct
      661 tacaatttca taagcatctt tatcttttaa aacttcttta gtaagtaaat gatttaaacg
      721 atgactccca gcatatgaag tataatcccc aaaaacacga tatccaagta aggttaaatc
      781 tccaattgca tctaaaattt tatgtcttac aaactcatct ttgaaacgca aaccttcagg
      841 atttaaaata cgattttcat ctaccactat agtattttct aaacttccac ctagtgctaa
      901 attcatactc ctaagagctt gaacatcttt taaaaaacca aaagtcctag cccttgctat
      961 gttttctata taattttttt tgctgaattc aaaattgtaa ctttgttcac ctataacagc
     1021 attgtcaaat ttaatcgtat agttaatacg gggttcttta gtaggagtta aacgcacaaa
     1081 tttattacca tctcttactt ctataggctt tttaattacc ataatttttt taggtgcatc
     1141 aagttctttt acccctgctt catcaagcat catacaaaag ctaatacttg atccatccat
     1201 aacaggagct tcatttgcat ttaaaactat gcgtacatta tcgattccat aagcattaat
     1261 cgcactcatt aaatgctcta ttgtagaaat aaaccctctt tcatctccta aaacagttgc
     1321 catttgagta ttgatcacat tttcaggact tgccttatag cttgcattaa gatcacttct
     1381 aaaaaatact ataccactat ttgcttctaa aggctctaaa gtaatttcta tgggttcacc
     1441 cttatgaagt cctataccta cgcctttgac agtttttgct aaagttaatt gtttcattaa
     1501 ttttttccta aaattatctt tttaccatca tttaaaacat tgtaaatatt attttctatc
     1561 cattttttat cttgccattg ttcaggacgc gtttcaaccc cttgaaccaa aactccaaaa
     1621 tgcaaatgat cgcctaaggc taaaccactt gttcctgttt tgcctataat gctttgttta
     1681 ttaatcattt catctaaatc aacattttta gaagaacagt gcccataaag actatatact
     1741 ccaaaaccat gataaacaat taaatttaaa ccataaattc cattttcagc agcaaaaaca
     1801 accttgcctg cgttattact tatgatagga gcttgtgcta cgcttgctag atcaagcccc
     1861 atatgataag aatcactcac aaattgccca ttataagaat aatacctatg atcagcaaaa
     1921 tccgctactt tcataccatt tttaagaggt aaaaataaat tcaaatcaaa attatcaatt
     1981 ttttcctcag gtacttttga agtgatttca tggataagtt tttcattgct atttcttaaa
     2041 gtttcattga caaacttaaa tttttcataa cgattgagat tattatcttt tggagcgtac
     2101 tgatttgcta aattctcaat ctttccatct aaaaatttat ccgtcagatt gatatttgaa
     2161 acacgatatt tacgattaac aaaataatac cttatacgtt cttttgaaat attgcccgct
     2221 ttatccgtag cgataacaaa tgcacgaaat tcctcatctc ttgcatccca agcaatcaaa
     2281 gccgcataat atccttcttt tacataagat gtggctttaa agattttacc tttatttgtt
     2341 tctatataca ccttatctaa attagcatca tcagccttaa aaacaactgc cccagcacca
     2401 ccttgctcga tttggtaaga attgcttatg atattgattt ttggagccgt attatctact
     2461 aataccgcaa tttgttttct tgcttcattg ccactaaaaa aattccaaaa actagaatct
     2521 ttagctatca cctccaaaac aaaagatttt acattttctt tgtaaccaaa ttttggcaaa
     2581 gcaacttgta aggtaatatc ttttaaatta gaaatctttt catctgctat aaccattgca
     2641 ctagtattgt cgtctttatg caatataatt tgtacgtttt tgatagaact ttcatcatct
     2701 ttaatatgca ctaaaatagg ttttttaaga tcagtatata caacatctgg cattaaaatt
     2761 tgaggaggat ttttttcaaa aatacttaat cttgaaataa aaaaaatcaa aattgctatt
     2821 aaaactaaaa ttaaaacaga taa
//
LOCUS       DARGEY010000139         2819 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.139, whole genome shotgun sequence.
ACCESSION   DARGEY010000139 DARGEY010000000
VERSION     DARGEY010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2819
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.139"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            50..733
                     /locus_tag="SF008_001619"
     CDS             50..733
                     /locus_tag="SF008_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEG8233857.1"
                     /translation="MKTFISNHKNQSSFITLFVFTPLFFVFLYSKDFLHIQPNETIKE
                     NKFNMAIKHFVQNSSDMKPTQPTQTIQEPSNVQPKEPVQEIKKIKPRKEKPIAKPKKI
                     IPPANAKAISQPKKDTNMQQQTPQASSYQSVSLTSNSELLKEIKSAIDEALIYPRQAR
                     KMRMSGEVLVEFTWTKEKKLENLKILKPSKYDFLNKSALETIRIASKKFPQYEKTFHI
                     KIPLVYKLS"
     gene            complement(825..1647)
                     /locus_tag="SF008_001620"
                     /pseudo
     CDS             complement(825..1647)
                     /locus_tag="SF008_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843529.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(2076..2170)
                     /locus_tag="SF008_001621"
                     /pseudo
     CDS             complement(2076..2170)
                     /locus_tag="SF008_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344161.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1065 a          444 c          314 g          996 t
ORIGIN      
        1 agaaataaag atatttaaat caaaaaataa aatcataacg gagtaaaaga tgaaaacatt
       61 tataagcaat cataaaaacc aatcttcttt tatcacttta tttgttttta cacctttatt
      121 ttttgttttt ctttattcta aagatttttt acacatacaa cccaatgaaa ctattaaaga
      181 aaataaattt aatatggcaa tcaaacattt tgtacaaaat tcctccgata tgaaaccgac
      241 acaacctaca caaactatac aagagccttc gaatgtgcaa cccaaagaac ctgtgcaaga
      301 aataaaaaaa ataaaaccga gaaaagaaaa acctatcgct aaacctaaaa aaataatccc
      361 tccagcaaat gcaaaggcaa taagtcaacc caaaaaagat acaaacatgc agcaacaaac
      421 tccacaagcc agctcttacc aaagcgtatc tttaactagt aatagtgagc ttttaaaaga
      481 aataaaatca gcaatcgatg aagccctaat ctaccctaga caagctagaa aaatgcgtat
      541 gagtggggag gttcttgtag aatttacctg gacaaaagaa aagaaattag aaaatttaaa
      601 aatacttaag ccttcaaaat atgattttct aaataaaagt gctttagaaa ctatacgcat
      661 agcttctaaa aaatttccac aatatgaaaa aacttttcat ataaaaatac cattggtata
      721 taaattaagc taaatctttc acaatatact ctatttttaa tacaaatcac tccagctttg
      781 ctaacgctta gaagtagaag cttcctagct aaagctaact agtattagct aattcgaaag
      841 gctttgagtt tatagtcctc aaggctaatt cctaacccaa acgactttaa tccacgcttt
      901 aagatattat ttgcagcatt aatatctcta tgtaaagtat tgccacattt ttcacaaaga
      961 tacactctat ctttaaacat aagatttttt ttgatatttc cacatacact acaagttttg
     1021 cttgtatatt gtggattgac ttttataaag aatttgccat tatgctttgc tttatactct
     1081 agatattgag agaattgata gaatgaagta ttaagaatag atttatttaa accactttta
     1141 gcttttatat tctttaattt agctctttta cacatattct taatttgcaa atcttcaact
     1201 gctagcaagt caaattcttg tatgagtttt gaagttatct tgtgataact atcctttttg
     1261 atatttgaac ttttttcata gattttattt aattttaatt gtgttttttt gaaattatgg
     1321 cttaactttg ttttctcctt ttttgttttt aatattctcc tgctttgttt tctttgcaat
     1381 cttttaatat tcagctctac taagtagctt taagttagta gctattaact ctccactgct
     1441 taaggtaatc tcattgatat ttaaatcaat gtcaactgtt tttttaatat caaaatcttt
     1501 gctagatatt aaagaaacat ttgattcatc ataaatgata ctaaaagcta aatagtattt
     1561 attgtgattt ttgataatag tgatttgatt aaacttataa gtatttggta aatctctgtg
     1621 ataacgcatt ttaaaaaatg tattcataag tctaaatatc ttaaacttag tagtatcact
     1681 atctttgatt ttgtaggctt gattattcca attaaagctt tgctttgcaa atttagagtt
     1741 tttaaatttg ggaaagcctt ttttttatct ctaattgctt gctctaaggc acgagaagat
     1801 taatccttgc ttgttgggtt acaacacttt tatagcttaa ttctcttgct tttataaggc
     1861 tagttttatt gattatctat cttacttgcc tttaaataac tcctatcttt tttatctaaa
     1921 ttcttatttt tatcccactg ctcttgctgt aaatttaaac aaatattata ggcttgatat
     1981 agatgaaaca ttgatgatta ataagctttt gttgttcttt gtttaggtag aattctatat
     2041 ttaaaacctt tggttatttg cattgctttg ttccattagg gctttttttc tttttggtta
     2101 tatatttttt cttagggtaa ttatcttcta tgccttgatt ttctgcatat tttttaagag
     2161 tttctagcat tattccgcat aggtattcta taaaaatact gattatgtca aatacctaac
     2221 tagagccgta caactaacac tgtaagcaat tcatctccca cttaagaagt gagagtttta
     2281 ttgaataaaa aaagataaat ttaaagcaag taatcttttt ttagacaaca ctaaaccctt
     2341 gcatgtattt acagtaatat ttatttcatc ataaacaacc cccaacccat aaacctcaat
     2401 aaacactata aaataaactt gagtgattaa aaatccaacc caattattga acaaacccaa
     2461 cctacataat aaaatataaa ctagacatat aaagaacaat tgacacataa aaatagattg
     2521 aataaataaa cctatacaag taaacataaa gattaattat tgatacaaaa gattcaataa
     2581 ataaaaagaa taattgagat ataaaaacat ataaactaaa caactcaaac aaccattaaa
     2641 ttaacccaag ccaatcaaca accatagcta agctgacaac acaacaaatc aatttaaata
     2701 taaaactaca aattaaatca acccaagcta attaaaccta taaacataaa aaaataatta
     2761 aatataaaaa caacgattga catataaaaa ctaagatttt aaatctataa gaataagat
//
LOCUS       DARGEY010000140         2700 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.140, whole genome shotgun sequence.
ACCESSION   DARGEY010000140 DARGEY010000000
VERSION     DARGEY010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2700
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.140"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..624)
                     /locus_tag="SF008_001622"
     CDS             complement(<1..624)
                     /locus_tag="SF008_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8233858.1"
                     /translation="MLYKRKNIKFKNFVDLHKNLSLSKLFDFYSVFEGFEKLNILNFE
                     DDVFTNIERILLDDYLKIKSYFALDETSSYALTLLAKNNRKRFSINRKIQHFKALSTL
                     KYLLETGIIKLEYSKEAKKIKDKRQKIKKELRSYVVQDKIIFSNQFTRFFFYFLKPNE
                     KLILQNRYKEVLECIKEKFELYQSFCFEQLSRELLEKKFNINGVQSYW"
     gene            660..1934
                     /locus_tag="SF008_001623"
     CDS             660..1934
                     /locus_tag="SF008_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEG8233859.1"
                     /translation="MYLQISDLKKELILKKGILHFDFTASALALKCVEKEISKILPTY
                     ANTHSDSSLNSFKTQQIYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIY
                     IPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFL
                     EKTLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISC
                     QYYDALFISSHKLIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQYYLCNEES
                     LEEGGTPGILQLIRASLAFKIKDSIGVKNIEKKEEILKDYFFEKLKTIPNLILYAKNL
                     KTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLDLKDNQKLKTKP
                     GWLRISLHYTHEKEDIDYFFNALNKTIVKLSH"
     gene            complement(1931..>2700)
                     /gene="purU"
                     /locus_tag="SF008_001624"
     CDS             complement(1931..>2700)
                     /gene="purU"
                     /locus_tag="SF008_001624"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HEG8233860.1"
                     /translation="SDVIFKYHINIVKNDEFVGEGMFFFRALLEGEFDKEAFIGTLEA
                     MLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSNELEANIKAVISNHNSLKDL
                     VEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVLAKYMRILSPDFVRHFEGKI
                     INIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNLDEGPIITQAVSPVNHEFTW
                     QDMQQAGRNIEKDVLSKALDLVFEDRIFIHNNKTIIF"
BASE COUNT          972 a          417 c          363 g          948 t
ORIGIN      
        1 ccagtaactt tgcactccat tgatattgaa ttttttctca agcaattctc tagaaagctg
       61 ttcaaaacaa aaactttgat aaagttcaaa tttttcttta atgcattcta aaacttcttt
      121 ataacgattt tgcaaaataa gcttttcatt gggctttaaa aaataaaaaa agaaacgagt
      181 aaattggttg ctaaatataa tcttatcttg gacaacataa gatcttagtt cttttttgat
      241 tttttgtctt ttatctttta tttttttagc ttccttacta tactcaagtt ttattatacc
      301 tgtttctaaa agatatttaa gtgtagataa agctttaaaa tgctgaattt ttctattgat
      361 agaaaaacgc ttgcgattgt ttttagctag taaagtaaga gcgtaagaac ttgtttcatc
      421 caaggcgaaa taacttttaa tttttagata atcatcaagc aaaattcgct ctatatttgt
      481 aaacacatcg tcttcaaaat ttaaaatgtt taatttttca aaaccttcaa acacactata
      541 aaaatcaaaa agcttactta aagacaaatt cttatgcaaa tctacaaagt tcttaaattt
      601 tatatttttc cttttataaa gcatttttat agtataattt tagcaaattt ttataaggat
      661 tgtatttgca aatttcagat ttaaaaaaag aattgatctt aaaaaaaggt attttgcatt
      721 ttgacttcac agcaagtgct ttagctctaa aatgtgtaga aaaagaaatt tcaaaaattc
      781 tcccaaccta tgcaaacaca cattctgata gctctttaaa ttcttttaaa actcaacaaa
      841 tttacgaaca agcaagaaaa gatataaaaa aaagtttatc attagatgaa aattttgccc
      901 ttatagcctg cggaacagga tcaagcagtg ctattaaaaa atttcaagaa ttgatcggca
      961 tttacattcc ccctcttgta aaagaaagat attttacgca aattgataaa aataccttac
     1021 ctttagttat cgtagggcct tatgagcatc attctaatga actttcattt cgagaaggct
     1081 tgtgcgaatg tattagaatt cccttggata aaaatgggga aattgatttt gattttctag
     1141 aaaaaacttt acaaaaaaac aaaaaaagaa aaataatcgc tagcttttct ttagcttcaa
     1201 atgttactgg gatattaagt gattacaaac gcatttctga aatggttcgt aaatttaaag
     1261 ggatagttgc ttttgatgca tctagtttca ttccctataa aaacatatct tgtcaatact
     1321 atgatgcgtt gtttataagt tctcataaat taatcggtgg tattggcggt tctggacttt
     1381 tagctatcaa aaaagatctt tgtggaaaca agcctagctt tgcagcaggt ggaactgtgg
     1441 gctatgtttc tcgcacttca caatactacc tttgtaatga agaatcttta gaggaaggag
     1501 gaacacctgg aattttacaa ctcattcgcg ctagcttagc ttttaaaatc aaagattcta
     1561 taggggttaa aaatatagaa aaaaaagaag aaattttaaa agattatttt tttgaaaaac
     1621 taaaaactat acctaattta attttatacg caaagaattt aaaaacccga ttgcctattt
     1681 ttgctttcaa tatcaaagga atttctcctt ttgatatcgc ttacgaactt agtaaaaaat
     1741 accacataga aacacgcgct ggatgtgctt gtgctgggcc ttatggtcat gatttgctag
     1801 acttaaaaga taatcaaaaa cttaaaacaa aaccaggctg gttaagaata agcttgcatt
     1861 atacgcatga aaaagaagat attgattatt tttttaatgc tttaaataaa actatagtaa
     1921 aattatcgca ttaaaatatt atagttttat tattatgtat aaaaattcta tcttcaaaaa
     1981 ccaaatcaag tgcttttgaa agaacatctt tttctatatt tctacctgct tgttgcatat
     2041 cttgccaagt aaattcatgg tttacaggcg aaacagcttg agtgataata ggaccttcat
     2101 caagattatt atttacaaaa tgtgccgtag ctccaattat tttaacccct ctttcaaagg
     2161 cttgtttata aggatttgct cctataaatg caggtaaaaa agaatggtga atatttataa
     2221 tcttgccttc aaaatgccta acaaaatcag gagataaaat tcgcatatat tttgctaaaa
     2281 ccaaataatc aaatttatat tgttcaagac attttaaaat ctgattttct tgctctttac
     2341 gatctaaatt ttcagcgctg ataaaatgat aaggaatttc aaatttctca actaaatcct
     2401 ttaaagagtt gtgatttgaa atcacagctt tgatatttgc ttcaagttcg ttactataat
     2461 gctttattag caaatctccc aaacaatgac tttctttagt agcaaaaaca acgatatctt
     2521 tttttctctt ctcgcaaagc tctatcaagg cttcttgtcc aagcatagcc tcaagcgttc
     2581 ctataaaagc ttctttatca aactcacctt ctaaaagagc acgaaaaaaa aacattcctt
     2641 cgcctacaaa ttcatcgttt tttactatat tgatatgata tttaaaaata acatcagaaa
//
LOCUS       DARGEY010000141         2686 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.141, whole genome shotgun sequence.
ACCESSION   DARGEY010000141 DARGEY010000000
VERSION     DARGEY010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2686)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2686)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2686
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.141"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            18..1463
                     /locus_tag="SF008_001625"
     CDS             18..1463
                     /locus_tag="SF008_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HEG8233861.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVARIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIAAIAATLKKIRESRE"
     gene            1467..1718
                     /locus_tag="SF008_001626"
     CDS             1467..1718
                     /locus_tag="SF008_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233862.1"
                     /translation="MDFLDSLKSIKKEMQANTNTSKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNTDIKKI"
     gene            1718..2437
                     /locus_tag="SF008_001627"
     CDS             1718..2437
                     /locus_tag="SF008_001627"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HEG8233863.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSRIEYKYIENCPKEINNELIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSRSERRVVNKNINTKVILRTPNLSNEHL
                     FLYDKYHRFMEEKKNWKRYDLSFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDIL
                     EDGISSIYCFYDPDFSYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEVLWEK"
     gene            2438..>2686
                     /locus_tag="SF008_001628"
     CDS             2438..>2686
                     /locus_tag="SF008_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG8233864.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTF"
BASE COUNT          998 a          327 c          502 g          859 t
ORIGIN      
        1 aacaaaaaag gcaaattatg aatcaaatcc ataaaattct catagcaaat agagctgaaa
       61 tagctgttag agtaatccgt gcttgtagag atttacatat taaaagtgtt gcagttttta
      121 cagagcctga tcgtgaatgt ttgcatgtaa aaatcgcaga tgaggcttat cgcataggaa
      181 cggatgctat aagaggatat ttagatgttg ctcgtattgt cgagattgct aaggcttgtg
      241 gtgctgatgc gatccatcct ggttatggat ttttaagtga gaattacgaa tttgctaagg
      301 cttgtgaaga tgctggaatt atttttatag gtccaaaatc tgaagtaatc cataagatgg
      361 gaaataaaaa tatcgctcgt aagttaatgg ctaaaaatgg catacctatt gttccaggga
      421 ctgaaaaatt aaattcctat agcatggaag aaattaaaat ttttgctgag aagattggtt
      481 atcctgttat tttaaaagct tcaggtggtg gaggtggacg cggaattcgc gttgttcata
      541 aagaacaaga tcttgaaaat gcctttgaat cttgcaaaag agaagcttta acatacttta
      601 ataatgatga agtatttatg gaaaaatatg tagttaatcc cagacatata gaatttcaaa
      661 ttttaggaga taactacgga aatattatcc atctttgtga aagggattgt tctattcaaa
      721 gaagacatca aaaggtaatt gagatagcac cttgccctgg aatttcagat aatcttagaa
      781 aaaccatggg tgttacagct gtggcagctg ctaaggctgt aggttataca aatgctggaa
      841 ctatagagtt tttgcttgat gattataatc gcttttattt tatggaaatg aatacaagaa
      901 ttcaagttga gcatccaatt actgaagaaa ttacaggtat tgatcttatt gtaagacaaa
      961 ttcgtattgc agcaggagaa attttggact tagaacaaag cgatattaaa cctaggggtt
     1021 ttgctattga agctagaatt actgctgaaa atgtatggaa aaattttatt ccaagtcctg
     1081 gaaaaatagg agaatactac ccagctcttg gaccatctgt tagggttgat agtcatattt
     1141 ataaagacta tactgtgccg ccttattatg attccatgct tgcaaagctt attattaaag
     1201 caacaagtta tgatttagcg gttaataaac ttgagcgtgc tttgaaggaa tttgtgattg
     1261 atgatattag aacaacaata ccatttttaa ttgccattac aaaaacaaga gaatttagaa
     1321 gggggtattt agacacctct ttcatagaaa cacatatgca agaattatta gaaaaaacag
     1381 aagatcgtca tcaagaaaat aaagaagaag ttatagctgc aatagctgct acgcttaaaa
     1441 aaatacgaga aagtagggaa taatagatgg attttttaga cagtcttaaa agtattaaaa
     1501 aagaaatgca agctaacacc aatacttcaa aattagcgaa gaaatcaagc aagagtggtg
     1561 caagtgtaaa aaatttagaa aaactagcta aagatattcg cgaaaaaaat caagaaacaa
     1621 acatagataa ggaaatgcaa gaaattttct taaagcaaga aaaactacag gatgaatttt
     1681 ccgaatttat caaaaataca gatattaaga aaatttaatg cttgagattg gtttttgtac
     1741 tcttgaagat cagtgtcctt acttaaagga taaacgttca agaatagagt ataaatacat
     1801 tgaaaattgc cctaaagaaa tcaataatga gctaataaaa cgaggttggc gtcgttttgg
     1861 taggtatttt tcacgcccta tttgtaaaga ttgtgatgaa tgtttaagtc ttagaatttt
     1921 agttaatgaa tataattttt caagaagtga aagaagggtt gtaaataaaa atattaacac
     1981 caaagttata cttagaacgc ccaatttaag caatgaacat ttgtttttat atgataaata
     2041 ccatcgtttt atggaagaaa aaaagaactg gaagcgttat gatttaagct ttaaacagta
     2101 ttataatctt tatgtcgatg gttttatgaa ttttggatat gagcttgcat tttatataga
     2161 agataagctc gtttgtgttg atttgattga tattttagag gatggaattt caagcattta
     2221 ttgtttttat gatcctgatt tttcgtattt ttctttgggt aaattttctt tgctcaatga
     2281 aatacaaata gctaaaaaaa tgaacttaga ttatatttat cttgggtatt ttgtaaaaaa
     2341 gtgtcaatct ttatcttata aagccgatta tacacccaat gaaattttaa aaggcactaa
     2401 agagcttttt gaaaatgagg ttttatggga gaaatagatg caaatcgtgc aaactttaga
     2461 aactatcaat gttaatacag atgatattag cgtatttcag tattttaaag acttgattac
     2521 caaaaatttc acaaaggtta taggacgaaa aaataaaatt ttttcttttt ttgaagaaaa
     2581 tgaaattcca cagcgccgtt atttcttaaa agttttagat caaaaatatc gtaaaagcac
     2641 aaatgaaggt atagagaatt tacaagatgc tcattttaaa actttt
//
LOCUS       DARGEY010000142         2681 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.142, whole genome shotgun sequence.
ACCESSION   DARGEY010000142 DARGEY010000000
VERSION     DARGEY010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2681)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2681)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2681
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.142"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            64..921
                     /gene="cheP"
                     /locus_tag="SF008_001629"
     CDS             64..921
                     /gene="cheP"
                     /locus_tag="SF008_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HEG8233865.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE
                     IISSDPLMMAKLLQLANSPYYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKID
                     VSPYGLNTQNFLKTCNEEATFIVNWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REKVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLKEAKTQGINFDLNNLLSKLPNK
                     AKENLNKED"
     gene            949..1428
                     /gene="cheQ"
                     /locus_tag="SF008_001630"
     CDS             949..1428
                     /gene="cheQ"
                     /locus_tag="SF008_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HEG8233866.1"
                     /translation="MMKSLILPPNEFLDHYILNAEFHRFAGISKNAYKFWKNVEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(1397..2680)
                     /locus_tag="SF008_001631"
     CDS             complement(1397..2680)
                     /locus_tag="SF008_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8233867.1"
                     /translation="MKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPKDLSSFWQMF
                     NTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAFIPNYESIGF
                     LCIVFLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVVGGILLGSLV
                     FLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMKKDKALEKFP
                     LKEVFKKAKMGIVLSMMITWVLTGCIVVMILLMPSYMAKILQINTSIQTYLQIGGILL
                     ICLGCIISGILADKISIIKSCVFFSVFFGIASLLYFNTLYRQNADFNLVACLYLLVCF
                     FSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHSFALNNLSNF
                     WRFSLGLYVFFLAIIALLCAFIFSYLNNTQRTYSQ"
BASE COUNT         1021 a          400 c          378 g          882 t
ORIGIN      
        1 aagtaaatta aaatttagat ataattgcaa attataataa tattaattaa ggataaatta
       61 aatatgattg gagatatgaa tgagctttta ttaaaaagcg ttgaagtatt gccaccttta
      121 cctgatactg taagtaagtt aagaaaatat gtgagcgagg ctaattcaaa tatagaaact
      181 atgaaagttg ctgaaatcat ttcaagcgat ccgttgatga tggctaagct tttgcaatta
      241 gcaaattctc cttattatgg ttttacaaga gaaattacaa ccataaatca agtgattact
      301 ttattaggcg ttggtaatat catcaatata gttatggctg actccattag agataatttt
      361 aaaatagacg tttcacctta tggtttaaat actcaaaatt ttttaaaaac gtgcaatgaa
      421 gaggcaactt ttatcgtaaa ttggcttaat gatgaagata aaaaactttc tcatctttta
      481 gttccttgtg caatgctttt aaggcttggt attgttattt tttcaaattt tcttatacaa
      541 aatcataagg ataaggattt tttagctttt ttaaataaaa atgaaaatct tgctttagcg
      601 gagaatgaat ttttaggcgt agatcatatt tctttcttgg gatttttgtt acatcgttgg
      661 aattttgatg atgttttgat tgaaagtata tgttttgttc gcactcctca tgctgctcgc
      721 gaaaaagtga aaaaatccgc ttatgcttta gcaataacag atcatctttt tgctccgcat
      781 gatggctctt ctccatttaa cgcaaaagct gcagttgctt tacttaaaga ggcaaaaact
      841 caaggaatta attttgattt aaacaatctt ttatctaagc ttcctaacaa agctaaggaa
      901 aatttaaaca aagaagatta aagagccttt ttaaggctct aaattgtagt gatgaaaagt
      961 ttaatcttac ctcctaatga atttttagat cactatattt taaacgctga atttcatcgt
     1021 tttgctggaa tttcaaaaaa tgcttataaa ttttggaaaa atgtagaaat aggtagatat
     1081 caaggaacaa gaattatatt tttgcataga aattgcattt tagaaaaaca tcagcaagct
     1141 ttaaggcaat gtagtggttt aaatggtttt gtattggcaa gtgctttttg ttcttttact
     1201 ggattagctc cctctcattt agtggaaaaa aataattctt ctatttataa acttttagag
     1261 cttaaggaga tttgcgggat taaatttgtt aatttaaaaa aattttatga ttttttaggg
     1321 ctaaattatc atcagcatat ttatatagaa aaatgccatt tttttagccc agctcctttt
     1381 gaaaagcgta ttaaaatcac tgagagtatg tgcgttgggt attattaaga taagaaaaaa
     1441 taaatgcaca tagcaaagct ataatagcca aaaagaaaac ataaagtccc aaagaaaaac
     1501 gccaaaaatt acttaaatta tttaaggcaa aactatgcaa gaaaaaagca agttgcggag
     1561 ttaaacctcc agctatagca taagcaatat tatatgaaaa agaaagtcct gaaaatttaa
     1621 tttttgcatc aaatacttca ctcattatta aagggcaaaa attcatcact ccgctaaaaa
     1681 aacatacaag taaatataag caagctacta ggttaaaatc agcattttgt ctatataaag
     1741 tattaaaata aagcaagctt gcaattccaa aaaaaacact aaaaaataca caagatttga
     1801 taatgcttat tttatccgct aaaattccac ttataataca ccctaggcaa ataagtaaaa
     1861 ttccacctat ttgaagatag gtttgtatag aagtattaat ttgaagtatt tttgccatat
     1921 aactaggcat aagcaaaatc attacaacaa tacaacctgt caaaacccaa gtaatcatca
     1981 tagaaagaac aattcccatt ttagcttttt taaacacttc ttttaaagga aatttttcta
     2041 aagccttgtc ttttttcatt tgttcaaaaa caggagtttc tcttaaaaat tttctcaaat
     2101 aagcagaaat aatcccaaaa attccaccta aaaagaatgg aattctccaa gcccattcat
     2161 gaagttcttc ttgggtataa attttattca taattaaaaa aactaaacta cctaataaaa
     2221 ttccacctac aaccgaagcg gttaaaattc ccaaataagt tcttttttga ccttgtggtg
     2281 cgtgttcgta tacaaaaacc caagctccag ggagttcccc gcctatagct ataccttgac
     2341 aaatgcgtat aaaaactaaa aatacaatgc aaagaaaacc tatgctttca taatttggaa
     2401 taaaagctag agtaaaagtt ggaataacca ttaacaaaat actaatcata aacattcttt
     2461 tacgtccaaa tttatctcca aaatgtgcca gtatcacacc ccctaaggga cgcgctaaat
     2521 atccagctgc aaatattcca taagtattaa acatttgcca aaaactactt aaatcttttg
     2581 gaaaaaagtt tgttgaaata taatttgcaa aaaatacaaa aataataaaa tcataaaatt
     2641 ctaaagttcc acctaatgat gaaagtccta aaacttttat a
//
LOCUS       DARGEY010000143         2641 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.143, whole genome shotgun sequence.
ACCESSION   DARGEY010000143 DARGEY010000000
VERSION     DARGEY010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2641
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.143"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            9..680
                     /gene="hsrA"
                     /locus_tag="SF008_001632"
     CDS             9..680
                     /gene="hsrA"
                     /locus_tag="SF008_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HEG8233868.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVKKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKGQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            793..1038
                     /locus_tag="SF008_001633"
     CDS             793..1038
                     /locus_tag="SF008_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HEG8233869.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            1038..2498
                     /locus_tag="SF008_001634"
     CDS             1038..2498
                     /locus_tag="SF008_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEG8233870.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTCEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFCNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDSYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSTNEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(2495..>2641)
                     /locus_tag="SF008_001635"
     CDS             complement(2495..>2641)
                     /locus_tag="SF008_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233871.1"
                     /translation="VLLESVEIPEEQTIKHTEKTEKNFDSFFEENKKRIQNLIEQRQK
                     GKKS"
BASE COUNT          975 a          390 c          396 g          880 t
ORIGIN      
        1 tagaacaaat gagaatttta gttatagaag atgagattag cctaaataaa acaattatag
       61 acaatcttaa tgaatttggt tatcaaactg attcttctga aaattttaaa gatggagaat
      121 actttatcgg cattagacat tatgatttag ttttagcaaa ctggacttta cctgatggag
      181 atggagcgga acttgttaac actattaagc ataaatctcc aagaacttcg gttatgatta
      241 tgtcttcaaa aacagacaaa gaaacagaaa tcaaagcttt gaaagctgga gctgatgatt
      301 ttgttaaaaa acctttagat tttgatattc tactcgcaag aattgaagca agactaagac
      361 ttggcggaac caatgttatt aaaattgaag acttagttat tgatccagat gaggaaaaaa
      421 ttacttataa aggtcaagat atagaactta aaggaaaacc ttttgaagtt ttaacgcact
      481 tagcaagaca ttcggatcaa attgtatcca aagaacaact tttagatgcc atctgggaag
      541 aacctgagct agtaactcca aatgttatcg aagtagctat caatcaaatt cgtcaaaaaa
      601 tggataaacc attaaatata tctaccatag aaacagttcg tcgtagagga taccgtttct
      661 gcttccctaa aaaatcttaa caattttgca ccttcggtgc aaaaaattta tctttatttc
      721 tatttttata ttttatttaa gtttggttat tgtataaact aaaattattt tttaaatttt
      781 tgaaaggtta tgatgtctct tttaattaca aaagactgcg tatgttgtga tgcttgcaga
      841 gaagaatgtc ctgatgaagc tatttatgaa aatagtccaa tttatgtaat agaccctgat
      901 ctttgttcag agtgcgttaa tgatttttca gagcctgcct gtattgttgc ttgcccatat
      961 gaatgtatca ttcctgatcc tgataatgta gaaactatag aagaattaaa actcaaacat
     1021 agagatagag aattttaatg gcaaaaaaaa cagccgttgt tgatcttggc tcaaactcca
     1081 ttagaatggt gatttttgaa aaaacttcta gatatggttt ttatacaact tgcgaataca
     1141 aacgcaaagt aagacttgga gaaaatgctt ataataatgg caaaattctc caagaagaag
     1201 ccatgcaaag agccgaagat gccttagctt ttttcaaaca atgcgcttta aagcataagt
     1261 gcaaaaaaat atttatagta ggcacatcag ccttaagaga tgccccaaat tcaaaaaatt
     1321 tcattaaaag aatcaaagat aatctgtctt taaatatacg ctgtatagat ggaaaaagcg
     1381 aaagttactt aggtggtctt gcagctctaa atttattaag tccttttaaa gatggaacca
     1441 ctttagacat aggtggtggt tctagtgaat tgtgtttaat aaaaaataat agaattattt
     1501 cttgcatatc tcttgatatt ggcactgtta ggctaaaaga attgttctat gatactggaa
     1561 aaatggattc tttagaagaa tttataaaac caattttaga acaaattcct aaagaatttt
     1621 gcaatcaaaa ccttattgca ataggtggaa gcttaagagc aatatctaat tccatcatgc
     1681 aaaaaaattc ctatccactg aaaaatttac atgattttcg ctatatgcta gatgaagaaa
     1741 aaggacatat tttaaaaatt tttaattcaa acttagactc tttaatcaat tttggcataa
     1801 aaaaggatcg ttttgatacc attaaagagg gtatatttat ttttttaaag attgcggaaa
     1861 aaataaaagc caaacaagtt atcacgagtg gggttggaat cagagaagga gtttatttgc
     1921 aagatttgct tcgtcctaaa atcacttttc caccaaattt taatcctagc ttaaaatgtt
     1981 tacaagataa atttttacaa tcaaaacaaa aaaataaaac tccacatttt gctctgcaaa
     2041 tttttacaac ccttaaaaat cttcataaac ttaacgatag ctataagcat actttactaa
     2101 atgctgccaa attatgccat attggagaat atttaaattt ctattttgct aatgaacact
     2161 ctgctcattt tgtactaggt ggattaaatt atggattttc acataaagaa aaagctttaa
     2221 ttgctagcat tattaagctt aatggaaaaa aagttaaccc ttataatctt gaaccctata
     2281 agcaactttt acccaatatt cataccattt catggcttaa ttttattttg tgcctagcta
     2341 aaactttaag cacaaatgaa gataagattg attttgcttt tgcaaacaat actctttata
     2401 tatatcaaga aaacaaaatt cttaatttac ccaaagatga gctcaaaaaa attgcaaaac
     2461 cagctaccat agcattagca atcaatcaaa aaatttaaga ttttttacct ttttgacgct
     2521 gctctataag attttgaatt ctttttttat tctcttcaaa aaaagaatca aaatttttct
     2581 ctgttttttc tgtatgtttt attgtttgtt cctctggaat ttcaacactt tctaaaagca
     2641 c
//
LOCUS       DARGEY010000144         2613 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.144, whole genome shotgun sequence.
ACCESSION   DARGEY010000144 DARGEY010000000
VERSION     DARGEY010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2613)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2613)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2613
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.144"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..666)
                     /locus_tag="SF008_001636"
     CDS             complement(<1..666)
                     /locus_tag="SF008_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233872.1"
                     /translation="MKYRYIKWDENEKCAIFFPDIDFDIWKKTQLLENDYANPTLIIS
                     SHLKDKVGILELFEYYILLICGKSMGVSRWECNNLILLDTYSIDNISSPFYLNTPKPT
                     YISEYINVLGQLFLAGYIDFGSYCDEDRNKIDYPSNLSYYKEDKYQAWIYFRDNFFYQ
                     DKFIRDLDDPETLDEGGYSLILNDVSWDTPQYWSQYNIWIATTPKGTKYFQEILAPKF
                     YNKY"
     gene            complement(656..2251)
                     /locus_tag="SF008_001637"
     CDS             complement(656..2251)
                     /locus_tag="SF008_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233873.1"
                     /translation="MLNYSILENSLNIKLECLSKQSLEYKDLISNTLKEQKTTQVDKK
                     QAIAKLHALLENQNLECIHGGKVILKSNKGKTFKDDGVPIMLESDLLNSSIVACPNTI
                     AGVSVPCTKVVNVKGSLSQKKVNNEYVILQELISACKTDKGFALKVSFTPTKFKFDHS
                     FDPKEGLGEQSKNQIELKEPIIRLHYKSDRFQKDNLPIYNLLINNEKKEQDKALNEFN
                     IDLKDLKDIEDVNIFNQFKQDFSKDYEFKELNLSFDTNLIKLYFIIPKNIAKVYKSAY
                     KEFENKDLGAGYFTQLHEYDKIIKNALEDNKELNEYHFSFLAPAKMQNLKLQIAQGLD
                     EILEDEDRKQELYVCKFVVVNGVSENNTQEIIPDNVIRIQTQDGSGEFIEIVFPSQLE
                     LNDKPLEDVSYTFVPALRGIKQFFKDTEYLKPRTLTKDEVLQIVDKLPKNVRDKRRRI
                     VENKEELDKLWKKLTKNSEEFENKVDKKYGQPIYMRKLDDQTIIQYKKTSKSGGETIE
                     INSNKPRGNLKTIHIENGIKNEI"
BASE COUNT          822 a          401 c          319 g         1071 t
ORIGIN      
        1 gtatttgttg taaaatttag gagctaagat ttcttggaag tattttgtgc cttttggggt
       61 tgttgctatc cagatattgt attgtgacca atattgtggt gtatcccaag aaacatcatt
      121 taaaataaga ctatatccac cctcgtctaa tgtttcagga tcgtccaaat ctctaataaa
      181 tttgtcttga taaaagaaat tatctctaaa atatatccaa gcttgatatt tatcttcttt
      241 ataataagat aagtttgagg gataatctat tttatttcta tcttcatcac aataagatcc
      301 aaaatctata taacctgcta gaaaaagttg ccccaagaca ttaatatatt cacttatata
      361 ggtaggtttg ggtgtattta aataaaatgg actgctaata ttatcgatgc tgtaagtatc
      421 taataaaatt aaattattac attcccacct tgagacaccc atgctttttc cacaaataag
      481 caaaatataa tattcaaata gttctaaaat accgacctta tcttttaaat gagatgatat
      541 aattaaagtt ggattagcat aatcattctc taaaagctgg gtttttttcc atatatcaaa
      601 atctatatca ggaaaaaaaa tagcacactt ttcgttttca tcccatttta tatacctata
      661 tttcattttt tatcccattt tctatatgta ttgttttaag atttcctctt ggcttattgg
      721 aatttatctc tatggtctca cccccgcttt tagaagtttt cttatattgt ataatagttt
      781 gatcatctag ttttctcata taaatcggct gtccgtattt tttatctact ttattttcaa
      841 actcttcaga atttttagtt aactttttcc ataatttgtc taattcctct ttattttcaa
      901 ctattctcct gcgtttatct cgaacatttt ttggcagttt atctactatc tgcaacactt
      961 catctttagt caatgttctg ggttttaaat actcagtatc tttaaaaaat tgctttatcc
     1021 ctcttaaagc cggaacaaat gtataactca catcttccaa aggtttatca ttgagttcta
     1081 attgactagg aaatactatc tcaataaact ccccactgcc atcttgtgtt tgtattctta
     1141 taacattatc agggataatt tcttgagtat tgttttcact aaccccattt accaccacaa
     1201 atttacaaac ataaagctct tgttttctat cttcatcttc taagatttca tctagtcctt
     1261 gtgcgatttg aagttttaaa ttttgcattt ttgcaggagc taaaaaacta aaatgatatt
     1321 cgtttaattc tttattatct tctaaagcat ttttgatgat tttatcatac tcatgtagct
     1381 gtgtaaaata ccctgctcct aaatctttat tttcaaattc cttataagca cttttataaa
     1441 ctttagcaat gttttttggg ataataaaat aaagtttgat taaattagta tcaaagctaa
     1501 gatttaattc tttaaattca taatctttac taaagtcttg tttgaattga ttaaaaatat
     1561 taacatcctc tatatctttt aaatctttta aatctatatt aaattcattt aaagccttat
     1621 cttgttcttt tttttcatta ttgattaaaa gattatagat aggtaaatta tctttttgaa
     1681 atctatcact tttataatga agtcttatta taggttcttt taactctatt tgatttttac
     1741 tttgttctcc taagccctct ttaggatcaa agctgtgatc aaatttaaac ttagtaggag
     1801 taaagcttac ttttaaagca aagcctttat ctgttttaca agctgagatg agttcttgta
     1861 agattacata ttcattattg actttctttt gagataagga tccttttaca ttaacaactt
     1921 tagtacaagg aacacttaca cctgctatag tattaggaca agctactata ctagagttta
     1981 ataaatcact ttctagcatt ataggcacac catcatcttt aaaagttttt cctttgtttg
     2041 atttaagtat gactttacct ccatggatac attctaggtt ttgattttct aaaagagcat
     2101 gaagtttagc tatagcttgt tttttatcta cttgtgtggt tttttgttct tttaaagtgt
     2161 ttgaaattaa gtctttatac tctaagcttt gtttgcttaa acattctaat ttgatattta
     2221 aagaattttc taatatagaa taattaagca aacaaagttc atcattttta taaaagatac
     2281 taagtcttcc taaaccactg ctttcatctt taggagaaaa ataataacta ggtgtatctt
     2341 gttttatagt gttatcttga tctaattctc caaagtaaaa aggattatta ggaagttcat
     2401 ttgagcctgt aaggagggtg gagtttagga agatttttat atctaaactt ttaaaatcta
     2461 tttgatattt ttcttctatg tcctttatat ccaaaacact tctatctttt gcaaaaatat
     2521 cacaatgatt atcataaata tggatcaaat ttgacataga gatgaaagaa gtattgttag
     2581 aattatcttg caaatcttgt aaatttactt tat
//
LOCUS       DARGEY010000145         2597 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.145, whole genome shotgun sequence.
ACCESSION   DARGEY010000145 DARGEY010000000
VERSION     DARGEY010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2597
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.145"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            31..657
                     /locus_tag="SF008_001638"
     CDS             31..657
                     /locus_tag="SF008_001638"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEG8233874.1"
                     /translation="MEKTDFRALQKIRLFKHSKLNFKQDYKIFKECLKIIKLFKAKNI
                     LIFIPLHYEPNLIKFRHILNKNYKLFVPFMQDKSLKIVKLRLPFIKKRFGVLEPIDSF
                     FKAKIDLAIVPVIGVDKNLKRIGHGQGFYDRFFENLNYKPHIIFVQSIDALSQNNLTQ
                     KHDISGKLYINPYKKYYKKERKNDRITYRTYSRYSRTRYRIFSCKKNQ"
     gene            578..2131
                     /gene="rny"
                     /locus_tag="SF008_001639"
     CDS             578..2131
                     /gene="rny"
                     /locus_tag="SF008_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEG8233875.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKIQKDFNQKFDDLSKKEQKLQQEEEKL
                     KEDKEYLCKSQRHIQNLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILKKV
                     EENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFAAERLINVINIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKRVSELEDIAK
                     SKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAVEYAK"
     gene            2140..>2597
                     /locus_tag="SF008_001640"
     CDS             2140..>2597
                     /locus_tag="SF008_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8233876.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKIALAMIKTKQHGIILLVTQKF
                     IYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFAAYTFGYVIEA"
BASE COUNT         1017 a          351 c          440 g          789 t
ORIGIN      
        1 ataagataat atttttttaa aggcatatta atggaaaaaa cagattttag ggcattgcaa
       61 aaaatacgcc ttttcaaaca ttcaaaacta aatttcaaac aagattataa aatatttaaa
      121 gaatgtctta aaataataaa actatttaaa gctaaaaata ttttaatttt tattcctttg
      181 cattatgaac caaacttaat aaaatttcgc catattctta ataaaaatta caaacttttt
      241 gttccattta tgcaagataa aagtttaaaa attgtaaaat taagattgcc ttttattaaa
      301 aaaaggtttg gggttttaga gcctatagat tcttttttta aagcaaaaat tgatttagct
      361 attgtgcctg taattggcgt cgataaaaat ttaaaaagaa taggacatgg gcaaggtttt
      421 tatgatagat tttttgaaaa tttaaattac aaacctcata taatatttgt ccaaagtata
      481 gatgctttaa gtcaaaataa tctaacacaa aagcatgata tttcaggaaa attatacata
      541 aacccttata aaaaatatta caagaaagaa agaaaaaatg atagaatcac ttatcgcact
      601 tatagccgct atagtcggac tcggtatagg atatttagtt gcaaaaaaaa tcaatgatgc
      661 caaatatgaa attttcgtag aacaagccaa agctaaagcc aaagctatag aatacgaagc
      721 ggagcttatt ttaaaagatg caaaaaattc aattcttaat gcagaattag aagttaaaaa
      781 aaaatacgaa gaaaaaactc acaaaattca aaaagatttt aatcaaaaat ttgatgatct
      841 ttctaaaaaa gaacaaaaac ttcagcaaga agaagaaaaa ctaaaagaag ataaagaata
      901 cctttgcaag tcacaaagac acattcaaaa cttacaatct gatgttgata aattaaaaaa
      961 taaatatcaa gaaaaacttg acgatgtttt aaaaatttta gaacattcga caggacttac
     1021 acaaaatgaa gccaaagaaa tcattcttaa aaaagtagaa gaaaattctc gcgagcaaat
     1081 tgcacatata gtaagaaaat atgaagaaga agcaaaaaat gaagctaaaa gaaaagctaa
     1141 tttcatcatt gctcaagcta cttctcgttt tgcaggtgaa tttgcagctg aaagacttat
     1201 caatgttatt aacattaaaa acgatgaact taaaggacgt atcattggta aagaagggcg
     1261 caatgttaaa accttggaaa tggttttagg tgttgatatt atcatcgatg atacaccagg
     1321 tgctattata gtaagttgtt ttaatcttta tcgccgtgct attgctacaa aagttataga
     1381 acttttagtt gaagatggca gaattcaacc cgcgcgcata gaagaaattc acgaaaaagt
     1441 gtgtaaagaa tttgatagtg ccattctaga agaaggcgaa accatagtta tggatctagg
     1501 tttaaataaa atacaccctg aaattgtaaa actcatagga aaactcaaat accgagcaag
     1561 ctatggacaa aacgctttag cacattcttt ggaagtggct caccttgcag gaatcattgc
     1621 tgctgagtgt ggtggagatg agaatttagc acgtcgtgcg ggaattttac atgatatagg
     1681 aaaagcatta acccatgatt ttgaaggatc tcatgtggat ttaggtgcag aactttgcaa
     1741 acgctacaaa gagcatcctg tagtaatcaa tgctatttac gcacatcatg gacacgaaga
     1801 agctacaagc atagaatcag cagctgtttg tgcagcagat actttaagtg ctgcacgacc
     1861 tggagctaga agagaagtgt tagaagcttt cttaaaaaga gtcagtgagc tagaagatat
     1921 cgctaaaagt aaagaaggaa ttaaaaatgc ctatgcaatc aatgccggaa gagaaattcg
     1981 cgtcatagcc aatgctcagc ttgttaatga tgatgaaagt gtacttttag ctaaggaaat
     2041 agcagctgaa attcaagaaa aaatgcaata tcctggtgaa attaaagtca atgttatacg
     2101 tgaacttaga gctgtagaat acgctaaata aggtttatta tgcaagatat gattgatact
     2161 ttaataaaat atggttatat tgttttattc ttttactctt taggaggtgg aatggttgga
     2221 attttagctg caggagtttt aagttctcaa ggaaaaatgg atcttagttt ttgcattgct
     2281 cttgctttta ttgctaatac cataggttca actttgcttt ttatacttgg aaaatattat
     2341 aaaaaagaca ttatgcctta ttttaaaaaa caccgacgca agatagccct tgctatgata
     2401 aaaacaaaac aacatggaat tattttactt gtaactcaaa aatttattta tggtttaaaa
     2461 acttttattc ccatagctgc aggtatggca aaatataatt ttattaaatt ttttattatc
     2521 aatactctag ctagtttggc atgggctatt gttctaggtt ttgctgctta tacttttggg
     2581 tatgttattg aagcaat
//
LOCUS       DARGEY010000146         2567 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.146, whole genome shotgun sequence.
ACCESSION   DARGEY010000146 DARGEY010000000
VERSION     DARGEY010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2567)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2567)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2567
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.146"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1149)
                     /locus_tag="SF008_001641"
     CDS             complement(<1..1149)
                     /locus_tag="SF008_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG8233877.1"
                     /translation="MRTYFSKIGFVLAVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFILSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNVITTNLTSSVFFFTLSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFSHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGAGIVFVSLMSLFNQLGALGYIFAFCFFLALFFAGITSAISMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLT"
     gene            complement(1162..2496)
                     /locus_tag="SF008_001642"
     CDS             complement(1162..2496)
                     /locus_tag="SF008_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG8233878.1"
                     /translation="MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFTMVGAILIVSFYT
                     LVIGWIVKYVFLSITGNLPMDLEVSKAQFGFFISEDFLSQFICFTLVFLCVFYIVSKG
                     VKNGIEKLNVWMMPSLFILLILMLVYAISKDGFIMAVKFLFVPDFSKINTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYN
                     PNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVSMIEPFTFYLINTF
                     GMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSVSSKVIMPLGGIL
                     AAIFVGFVMKKEALKILFKPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK"
BASE COUNT         1155 a          470 c          281 g          661 t
ORIGIN      
        1 agttaattta tctaataaag taaaaaaatc tttgccaaaa aaactaaaca tagaaaaaaa
       61 atttaaattt aatgacaaga tacaacaaat tccaaaaaca aaaacaaata aacctattaa
      121 aaatagagct ttaacacgag aaatttgata gttattaatc atataaaaag ttaaaggctc
      181 tatcattgaa atagctgaag taataccagc aaaaaaaagt gctaagaaaa aacaaaatgc
      241 aaaaatatag cctaaagctc caagttgatt aaacaaactc atcaaggata caaaaacaat
      301 tcctgctcct tgagtatgcg gatcggctcc aaattcaaag ataaaagtaa aaacaataag
      361 tcccataata aaagaaatca ataaattaat caaaacaata tacactgaac tttttataaa
      421 atttgttttt ttatccaagg ccgatgaata tgtaactata caacctattc ccaagcataa
      481 ggtaaaaaat gcaagcccta aagcttcggc aatagagctg aatttaaaat gtgaaaaatc
      541 gggataaaat aaataagaaa aagcatttgc aaaaccttgc ttaaatccca tgcaataaaa
      601 caacataaaa acaagcatta aaaataagct aggcattata acaacgttta atttttcaat
      661 ccctttgatt aaacctttag atactatcaa taaagtaaga aaaaaagata aagtgaagaa
      721 aaaaacagaa cttgtcaaat ttgtagtaat tacattctga aaattacttg ctgcttcatc
      781 taaagtttta ggaagataat aaagactcac tacagtatat tttaaaaccc atcccatgat
      841 aactagataa aaagagagga taaaaatacc acctaacata aaaacgccgc catatcgcca
      901 tctattgcca tattttatgg caagatttga ataagcattt gcaagatcac ttttacttaa
      961 acgtcccata gccacttcag ccaaaaaaat actaaatcct atagttaaag taaaaaacaa
     1021 atataaaagc acaaaaacaa aaccaccatt ttctgcgctt aaagttggaa atttccaagc
     1081 attacctaaa ccaacggctc caccagcaac agccaataca aaaccgattt ttgaaaaata
     1141 tgttctcatt atttttcaaa ctcactttaa aaaagcggct atcataacta taacaacagc
     1201 caaaggggaa ataaatctca aaaacacata ccaaagttca aaaaatatac ccctcatata
     1261 aggtttaaat aaaattttta aagcttcttt tttcatcaca aatcccacaa aaatagctgc
     1321 caaaattcca cctaaaggca taataacctt gcttgaaaca ctatcaagca aatcaaaaaa
     1381 actcattcca aaaaatccaa actgagtact ttttaaagaa gataaaatac acaacattcc
     1441 taaaatataa acaacaattc ctattaaaat caaagctttt ttacggctca taccaaaagt
     1501 attaataagg taaaaagtga aaggctctat cattgaaaca gctgaagtaa taccagcaaa
     1561 gattaaagaa ataaaaaacg ctgctccaaa aatacaacca atcactccaa ttttttcaaa
     1621 taaagtagct aaggaaataa aaacaagtcc tggtccttgc tgattaggat tgtaaccaaa
     1681 ctcaaagata aaagtaaaaa caaccaaacc cattaataaa ccaactaaaa gattgataaa
     1741 aataatattt aaagtactgg taataaaatt ggttttatca ggcagactag cagaataagt
     1801 aataatcgtt ccaacgccca aagaaagact aaaaaaagca agtcctaagg cttcaagaac
     1861 atttgaagtg ttgattttgg aaaaatcagg tacaaaaaga aatttaaccg ccattataaa
     1921 accatctttg ctaatagcat aaacaagcat caaaataagc aaaataaaca atgaaggcat
     1981 catccaaaca tttaactttt caatcccatt cttaacacct ttagaaacaa tataaaaaac
     2041 acataaaaaa accaaagtaa aacaaataaa ctgacttaaa aaatcctcac ttataaaaaa
     2101 tccaaactgt gctttactta cttctagatc cataggcaaa tttccagtga tacttaaaaa
     2161 cacatattta actatccagc caatcaccaa ggtataaaaa gaaactatta aaatcgcccc
     2221 caccatagta aaaccaacat aagaccaagc ttttttattt gaaggtgcta acttttcata
     2281 ggcattaacc ggatcttttt cactaatttt tcctatgcta agctcagcta aaaatatcac
     2341 aaaacctaca cctaaagtaa gaattatata aagcaagata aaagcagatc caccactttg
     2401 acctactagt gttggaaatt tccaagcatt acccaagccc accgctgaac ctgctaccgc
     2461 taaaatgaaa cctatttttg aaaatttaga actcaatgtt acaaccttga cttaaaaatt
     2521 attttaaaat attattaaag caaaaaaact tttaagcttt attgaaa
//
LOCUS       DARGEY010000147         2563 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.147, whole genome shotgun sequence.
ACCESSION   DARGEY010000147 DARGEY010000000
VERSION     DARGEY010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.147"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..546
                     /gene="dccS"
                     /locus_tag="SF008_001643"
     CDS             <1..546
                     /gene="dccS"
                     /locus_tag="SF008_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HEG8233879.1"
                     /translation="QLEYQNLGDNAKFTRIKLAAKSLSQVYSDLVFYNFPNTLETEKQ
                     KFDLRILLEERLEYFKVFFEQKKITLKLDLNQANIFAPKSQISKLIDNLISNAIKYNK
                     KGGVISIILKANFLSIADTGCGISKSNLNHIFDRYTRFNTDQGGFGIGLSLVKKVCDD
                     NDIKIICESVENQGSVFKLNW"
     gene            complement(589..2226)
                     /gene="groL"
                     /locus_tag="SF008_001644"
     CDS             complement(589..2226)
                     /gene="groL"
                     /locus_tag="SF008_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEG8233880.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPTMPDMSGMGGMGGMGGMM"
     gene            complement(2247..2507)
                     /gene="groES"
                     /locus_tag="SF008_001645"
     CDS             complement(2247..2507)
                     /gene="groES"
                     /locus_tag="SF008_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEG8233881.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
BASE COUNT          752 a          487 c          362 g          962 t
ORIGIN      
        1 caacttgagt atcaaaattt aggagataat gctaaattta caaggattaa gcttgctgca
       61 aaaagtttgt ctcaagtgta ttctgatctt gttttttata atttccctaa taccttagaa
      121 acagaaaaac aaaaatttga tttaagaata ctacttgaag aaagattgga atattttaaa
      181 gtattttttg agcaaaaaaa aattacacta aagcttgatt taaaccaagc aaatattttt
      241 gctcctaaaa gtcaaatttc taaattgatt gataatctta taagcaatgc tattaaatac
      301 aataaaaaag gtggagtaat ttctataatt ttaaaagcca attttttaag tattgcggat
      361 acaggttgtg gaatttcaaa gtcaaattta aatcatattt ttgatagata tacaagattt
      421 aataccgatc aaggaggatt tggtataggg ctttctttgg taaaaaaagt ttgtgatgat
      481 aatgatatta agattatttg cgaatctgta gaaaatcaag ggagtgtttt taaattaaat
      541 tggtaatcag caaggaaaat ccttgctgat aagaggttag agcagatatt acatcattcc
      601 gcccatgcca cccattcctc ccataccgct catatctggc atagtaggtt tatcttcttt
      661 aatttcacta attgttgctt ctgtggttaa aagcatacta gctacagaaa ctgcattgag
      721 taaagctact ctttctactt taacaggatc gataattcca ctttcaagca tattaacata
      781 ttcacctttt gcagcatcaa atcctgtgtt ttcatcttta gcattttcta cgctatttac
      841 aaccacacct gcatcaaatc ctgcattttc agcaatttgt cttaaaggtg ctcttaaagc
      901 tctttcaacg atagctgcgc caattgcttc atcaccctgt agatcaagtt tgattttagc
      961 ttttgctttg ataagcgctg caccaccacc aattactata ccttcttcaa ctgctgcttt
     1021 agtagcgctt aaagcatcgt caacgcgatc ttttttctct ttcatttcag tttcagttgc
     1081 tgcacctact ttaataactg caacaccacc acttaatttt gcaagtcttt cttgtaattt
     1141 ttctctgtca taatctgaag ttgtttcagc aatttgtgct ttgatttgat tgactctcgc
     1201 atcaatattt gctttttcgc ctgcaccatt tactatggtt gtattgtctt tatcgatgat
     1261 tacactagaa gcttgtccaa gatcttgtat agtcgcactt tcaagagttc ttccaagttc
     1321 ttcagaaatc acttctccac ctgttaaaat cgctatatct tcaagcatag cttttcttct
     1381 atcgccaaaa cctggagctt tcactgctga aatattaaga acaccgcgaa gtttatttac
     1441 aaccaaagtt gcaagcgctt caccttcaat atcttcagcg ataattaaaa gtggtttgcc
     1501 tgttttttga atttgttcta aaaccggtaa taaatctttt aaatttgtaa tttttttatc
     1561 aaaaagcagg atataagggc ttgaaagctc tactgtcatt ttttctgcat tagtgataaa
     1621 ataagggctt aaataacctc tgtcaaattg cataccttca actacattta attcatcatt
     1681 gattgatttt gcctcttcaa cagtgataac accatctttg cccacttttt ccatagcatc
     1741 agcgattaaa tttccgattt tttcatcaga gttggctgag attgtagcaa cttgtgcaat
     1801 ttctttttta tcttttactt cgcgagaaag ttttttaagt tctgctacta tagcttcgca
     1861 agctttatcc ataccgcgtt ttacctcgat aggatttgca cctgctgtga tatttcttaa
     1921 accttctttg aaaattgcat gagctaaaac cgttgcagta gttgttccat cgcctgcttg
     1981 atcagctgtt ttactcgcta cttctcttac gagtgaagca cccatatttt caagactatc
     2041 tttaagctct acttctttag caacacttac gccatcttta gtaatgcttg gagcaccaaa
     2101 gcttttttgg attaaaacat tgcgtcctct tggccccata gttactttta ccgcgtcatt
     2161 aagtttttta acgccctcat aaagtttatt tcttgcttca tctgaaaaaa taatttcttt
     2221 tgccattttt tatccttttt tataaattat tttaaaattc ctaagatatc atctaaattt
     2281 aaaactaaat attcattatt atcaagttta atttctgttc caccgtattt agcaaacacg
     2341 attttatcac catttgcaat atcagtgatt tctttactta ctgctactac ttcacccatt
     2401 aaaggctttt ctttagcatt atctggtata attatgcctg aggctgttgt tttagtttct
     2461 tctacgcgtt taactagaac acgctttcct aaaggttgaa aattcatttt tgtccatcct
     2521 taaaaatatt gattttagca ctcttttatt tagagtgata ata
//
LOCUS       DARGEY010000148         2351 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.148, whole genome shotgun sequence.
ACCESSION   DARGEY010000148 DARGEY010000000
VERSION     DARGEY010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2351)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2351)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2351
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.148"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..2311
                     /locus_tag="SF008_001646"
     CDS             <1..2311
                     /locus_tag="SF008_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HEG8233882.1"
                     /translation="VLNTGRENNQAFAVLHASNDLEFTCQKFITEAKVHFECDIAGMV
                     DNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTSQNIYIDKELSSSSSHKSKA
                     FTFIFTPELAPIKDYDGLDFNINFPHESLPYVGALDLNSDPVVIPQSADINTYLRIKK
                     EYDKANYNQVVIDAQNAINRYRGSIFTSEFILYKLRAQNKLYTQDPSIRDQQILEKMI
                     DDAKNWMRTFTSDKNFSEVLHIMLKTYIALAQRADVEYTMSILDNEQPNNYFTQLSKL
                     DYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSLAKNLLLNEQVNKAIEYINT
                     ILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDAFAKMSKLDPSYEETLKDLA
                     LVLSHANRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEVFFALGDNNASFLHQRYTDL
                     MKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLIESKKIPNATQFLEKAAIND
                     LKNAIKADNCINAANIFMRFSAYDIGQKIENKKQMLACLIRTSNVEQALDYIDKNYNE
                     DSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDDENFKAYYLQFLSLLRLNDY
                     NQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTILTYAPKAIDYQNFKGINLF
                     SPNLEFMYLDTLAKINKNEESLAVLTDLLKLKLSDKDKARALYIQALTYERMQNIQAE
                     KESLKQCLEIKSVSNWQNLCKSKNQILNQ"
BASE COUNT          900 a          282 c          357 g          812 t
ORIGIN      
        1 tgttttaaac acgggtcgcg aaaataatca agcttttgca gttttacatg cgagtaatga
       61 tttagaattt acatgtcaaa aatttattac cgaagcaaaa gttcattttg aatgtgatat
      121 tgcaggtatg gttgataata aattaaaaga tcagagtttt tctgcttttg atttaaaatt
      181 tatacaagaa gctcaaaaaa ttaaaatgat cattttgcca aaaatacaag caagaatgtt
      241 tgacacttct caaaatattt atatagataa agaactcagt tcatcaagtt cgcataaaag
      301 taaggctttt acttttattt ttacaccaga actagcacct attaaagact atgatggact
      361 tgattttaat atcaattttc cacatgagag tttgccttat gttggagctt tggatttaaa
      421 ttctgatcct gttgttattc ctcaaagtgc agatatcaat acttatttac gcatcaaaaa
      481 agaatacgat aaggctaatt acaatcaagt ggtgattgat gcacaaaatg ctatcaatag
      541 atatcgtggc agtattttta ctagtgaatt tatactttat aaattaagag ctcaaaataa
      601 actttacact caagatccaa gtatacgcga tcagcaaatt ttagaaaaga tgattgatga
      661 tgctaaaaat tggatgcgta cttttacaag tgataaaaat ttttcagaag ttttacatat
      721 aatgttaaaa acttatatcg ctttagctca gcgtgctgat gtagagtata caatgtcgat
      781 tttggataat gaacaaccta ataattattt tactcagtta tcaaaacttg attatgcaga
      841 ttatatttat aatttaaatg aaaaagaaaa agctgtaaat atctatgaaa atacttattt
      901 taatacaaaa aatttagatt tagctgcaag agcagctatg agtttggcaa agaatttgct
      961 tttaaatgag caagtaaata aagctataga atatattaat accattttaa aagccaatcc
     1021 tgaatatttt ggaaaagata ttccaagatc tttagaactt gctaaattat ttaatcaaaa
     1081 aggacaattt gatataagtg caagtattta tgaagatgcc tttgctaaaa tgtccaaact
     1141 tgatccaagt tatgaagaaa ctttaaaaga tttagccttg gttttatcac atgctaacag
     1201 atctagtgat gctaaaaaat accttgattt gtatatggat gattatttag atggtaagta
     1261 tttagatgaa attaaaaaag caagtgatga ggtattcttt gctttaggtg ataataatgc
     1321 aagctttttg catcagcgtt atacagattt aatgaagcaa tatgcaaata aagatgagaa
     1381 tattgcaaat aaagctttag atgaagatgt tgcactttat tataaagagg gaaattttag
     1441 tgccatttta gcttataaag atcttataga aagtaaaaaa attccaaatg ctactcaatt
     1501 tttagagaaa gcagccatta atgatttaaa aaatgccata aaagctgata attgtatcaa
     1561 tgctgcaaat atttttatgc gttttagtgc ttatgatata ggtcagaaaa ttgagaataa
     1621 aaaacaaatg ttagcttgtc ttatcagaac ttctaatgtt gaacaagcac ttgattatat
     1681 agataaaaat tataatgaag attctatatt ttatggtctt caaaaagcat ctattctttt
     1741 tgataataaa caatatcctc aggtgatcaa aatttctaaa gatatagcta attctagaat
     1801 tttaaaaagc gatgatgaga attttaaggc ttattatttg caatttttgt ctttgttgcg
     1861 tttaaatgac tacaatcaag ctattaaaat tttgcaaatt ttagaaagtt ttccaatgaa
     1921 ttttagtatg gtagaagcct acgatgcttt actttcttat gctaatgatc ataatatgca
     1981 aacaacgatt ttaacttacg cacctaaggc cattgactat caaaatttta aaggtataaa
     2041 tctttttagt cctaatttgg aatttatgta tcttgatact ttggctaaaa tcaataaaaa
     2101 tgaagaaagt ttagctgttt taacagattt gcttaaatta aaactttcag ataaggataa
     2161 ggcaagagct ttatatatcc aagctttaac ttatgaaaga atgcaaaata tacaagctga
     2221 aaaagaaagt ttaaaacaat gtcttgaaat caaaagtgtt tcaaattggc agaatttatg
     2281 taagagtaaa aatcaaattt taaatcaata agtaaattta gagataacta gctttttagc
     2341 tagttatcta a
//
LOCUS       DARGEY010000149         2337 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.149, whole genome shotgun sequence.
ACCESSION   DARGEY010000149 DARGEY010000000
VERSION     DARGEY010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2337
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.149"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(143..219)
                     /locus_tag="SF008_001647"
     tRNA            complement(143..219)
                     /locus_tag="SF008_001647"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(183..185),aa:Ile,seq:gat)
     gene            complement(228..303)
                     /locus_tag="SF008_001648"
     tRNA            complement(228..303)
                     /locus_tag="SF008_001648"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(268..270),aa:Ala,seq:tgc)
     gene            complement(406..1918)
                     /locus_tag="SF008_001649"
     rRNA            complement(406..1918)
                     /locus_tag="SF008_001649"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          664 a          537 c          432 g          704 t
ORIGIN      
        1 ataatgtata tgctacttat atctattaaa gtatattctt ttatagttaa agataaaaat
       61 aaatctaagt atagagttta tatttaatct attttatata cttgctttag attttaaagc
      121 ttctttattc aaatcttttt tatggtgggc ctaacaagac ttgaacttgt gacctcaccc
      181 ttatcagggg tgcactctaa ccagctgagc tataggccct taataaatgg tggagaatag
      241 cgggatcgaa ccgctgacct cctgcgtgca aagcaggcgc tctcccagct gagctaattc
      301 cccataaaca attagcttta tcatcaatct ttgaaatcta aacaagaatc aattgagttt
      361 atatattgaa gtaatagttg tgagacttat tactttgtac tctagaaagg aggtgatcca
      421 accgcaggtt ctcctacggt taccttgtta cgacttcacc ccagtcgctg attccactgt
      481 ggacggtaac tagtttagta ttccggcttc gagtgaaatc aactcccatg gtgtgacggg
      541 cggtgagtac aagacccggg aacgtattca ccgtagcatg gctgatctac gattactagc
      601 gattccggct tcatgctctc gagttgcaga gaacaatccg aactgggaca tattttatag
      661 atttgctcca cctcgcggta ttgcgtctca ttgtatatgc cattgtagca cgtgtgtcgc
      721 cctgggcata agggccatga tgacttgacg tcgtccacac cttcctcctc cttacgaagg
      781 cagtctattt agagtgctcg gccgaaccgt tagcaactaa atacgtgggt tgcgctcgtt
      841 gcgggactta acccaacatc tcacgacacg agctgacgac agccgtgcag cacctgtctc
      901 taagttctag caagctagca ccctcttatc tctaaaaggt tcttaggata tcaagcccag
      961 gtaaggttct tcgcgtatct tcgaattaaa ccacatgctc caccgcttgt gcgggtcccc
     1021 gtctattcct ttgagtttta atcttgcgac cgtactcccc aggcggtaca cttaatgcgt
     1081 tagctgcatt actgagatga ctagcacccc aacaactagt gtacatcgtt tagggcgtgg
     1141 actaccaggg tatctaatcc tgtttgctcc ccacgctttc gcgccttagc gtcagttgag
     1201 ttccagcaga tcgccttcgc aatgggtatt cttggtgata tctacggatt ttacccctac
     1261 accaccaatt ccatctgcct ctccctcact ctagactatc agtttcccaa gcagtttaat
     1321 ggttaagcca ttagatttca caagagactt gataatccgc ctacgcgccc tttacgccca
     1381 gtgattccga gtaacgcttg caccctccgt attaccgcgg ctgctggcac ggagttagcc
     1441 ggtgcttatt ccttaggtac cgtcagaatt cttccctaag aaaaggagtt tacgctccga
     1501 aaagtgtcat cctccacgcg gcgttgctgc gtcagggttt cccccattgc gcaatattcc
     1561 ctactgctgc ctcccgtagg agtctggacc gtgtctcagt tccagtgtga ctgatcatcc
     1621 tctcagacca gttaagcgtc atagccttgg taagccatta ccttaccaac tagctgatac
     1681 tatatagtct catcctacac cgaaaaactt tccctactca acttgtgtta agcaggagta
     1741 tagagtatta gcagtcgttt ccaactgttg tcctcttgtg tagggcagat taactatacc
     1801 ttactcaccc gtgcgccact aatccacttc tagcaagcta gaagcttcat cgttcgactt
     1861 gcatgtatta ggcacgccgc cagcgttcac tctgagccag gatcaaactc tccataaaaa
     1921 ttatagatag tttaatcttt ttcttcaaag aaaaagttat gaaagattaa aagaaaagct
     1981 tttaatcttt ttcattatta gattgaatag attttacata attacttatg cctaaatctt
     2041 tctggctcaa tcgatcactt atttagattt caaagattga ctaataagat ttgaataaca
     2101 atactaagtt aaaagaacaa aacaaaaaat catttttaaa agaaaagttt ttaaattaaa
     2161 aaacaagatt tataaaaaag cttttagttt ataagataaa aaccaaaaga gttaatttat
     2221 aaaatctact aagctagtga aactttataa tttaaaagat tttaagtcct tttttcaaaa
     2281 aaggaaatga aagtataacc aattaaactt aaaagtgtat taaacaaagg attaaat
//
LOCUS       DARGEY010000150         2313 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.150, whole genome shotgun sequence.
ACCESSION   DARGEY010000150 DARGEY010000000
VERSION     DARGEY010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2313
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.150"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..269
                     /locus_tag="SF008_001650"
     CDS             <1..269
                     /locus_tag="SF008_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NTPase"
                     /protein_id="HEG8233883.1"
                     /translation="YKPKIYDEMLDGTFKAIKNLSEVANKDVGVMILEFANSYSETRE
                     KFEKKQINKSSFFKEKMNEFFKKKLNKILPDREISNEKTYSRSR"
     gene            273..926
                     /locus_tag="SF008_001651"
     CDS             273..926
                     /locus_tag="SF008_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233884.1"
                     /translation="MNNTINFNELFSQIRLSSYNNDIVKHYDNLKCVGKITPKLATLE
                     IILRNKLDNKLSEKDNDWIKNSNDEKIKKSKEEIEHREKNRILSHHQYLSRISLGTII
                     HLIKENKLQNSIMDLKNINFRNYNQYNRNFFFENGIKLRFRNTHKVDIVLSLLQNLRN
                     RSYHWENILKTTEKNGKHYPRLTTKIKNTHIGVDPQKIDFFLSDLIKTFNEKILEYC"
     gene            1045..2271
                     /locus_tag="SF008_001652"
     CDS             1045..2271
                     /locus_tag="SF008_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEG8233885.1"
                     /translation="MPQKRIYLYVPFKDKEKAKSLGAMWDDKEKKWFAPKTLDKNIFS
                     QWLYPHQNKEFSFDENEVLTAFKSALENQGLIIEGLPIMDGKIHRVKTTNDKGRELSG
                     AYNGFLDDYPAGFMQNFKTGIKENWKMPIEKNQSNNIKNSQKLHEQIKKDQELREKEI
                     LTLQEKTALKLENEYNNARWANSNHAYLKKKGFDENFYLKQDNKGSLLIPLKDENGKL
                     WSVQRIFPNGDKIIGVIKTQEEKDQGVEYLAKKQGCFHIIGAKSLEHCKEFIITEGFA
                     TAATIYKALNKPVIMGVDAGNLSKIVETLKNKFQNTPITLIADNDKKRELKGLSNVGV
                     ETAKEIQQKFSDIKVIIPKISNQEAEQGISDFNDIFLNKGIDEVKKQLNFIDFHNKLK
                     SFKSMEKTQPEKEITR"
BASE COUNT         1034 a          273 c          329 g          677 t
ORIGIN      
        1 tttataaacc aaaaatatat gatgaaatgt tagatggaac ttttaaagca ataaaaaatt
       61 tatcagaagt agccaataaa gatgttggtg taatgatatt agaatttgca aattcttatt
      121 ctgaaactag agaaaaattt gaaaaaaagc aaattaataa aagttcattt tttaaagaaa
      181 aaatgaatga atttttcaaa aaaaaactaa ataaaatttt accagataga gaaattagca
      241 acgaaaaaac atattctcga tcaaggtaaa aaatgaataa tacaataaat tttaatgaac
      301 tattttctca aataagatta tcttcttata ataatgatat tgtcaagcac tatgataatc
      361 ttaagtgtgt tggaaaaatt actccaaaac ttgctacatt agaaattatt cttagaaata
      421 aattagataa taaattatca gagaaagata atgattggat aaaaaactct aatgatgaaa
      481 agattaaaaa atccaaagaa gaaattgagc atagggaaaa aaatagaatt ttatctcatc
      541 atcaatatct ttctcgtata agtttaggaa ctatcattca tctcatcaaa gaaaataaat
      601 tacaaaactc tataatggat ttaaaaaata tcaattttag aaactacaat caatacaata
      661 gaaatttctt ttttgaaaat ggcataaaat tacgctttag aaatacgcat aaagttgata
      721 ttgttcttag cttattacaa aatctaagaa atagaagtta tcattgggaa aatattttaa
      781 aaacaacaga aaaaaatggc aaacattacc caagattaac aacaaagatt aaaaacacac
      841 atataggagt agatccgcaa aaaatagatt ttttcttaag tgatttaatt aaaactttta
      901 acgaaaaaat tttggaatat tgttaagatt aaaaaatggg acacaaggag tccctcgaat
      961 ttaaaaggtg ggctactagg aagccctttg aatttcattg taattatact gacaaaacat
     1021 taaacaaagt taaaaggata tacaatgcct caaaaaagaa tttatcttta tgttccattt
     1081 aaagacaaag aaaaagcaaa atcattaggg gcaatgtggg atgataaaga aaaaaaatgg
     1141 tttgctccaa aaaccttaga taaaaatatt ttctcacaat ggctttatcc acaccaaaat
     1201 aaagaatttt catttgatga aaatgaagtc ttaacagctt ttaaatctgc tttagaaaat
     1261 caaggtttaa ttattgaagg cttacctatc atggatggta aaattcatag agtaaaaact
     1321 actaatgata aaggtagaga attaagcggt gcctataacg gttttttaga cgattatcct
     1381 gcagggttta tgcaaaattt taaaacaggc attaaagaaa attggaaaat gcccatagaa
     1441 aaaaatcaaa gcaataatat aaaaaattct caaaaattac atgagcaaat aaaaaaagat
     1501 caagagctta gagaaaaaga gattttaact ttgcaagaaa aaaccgcttt aaaacttgaa
     1561 aatgagtata ataatgcaag atgggctaat tccaatcacg cttatttaaa gaaaaaaggc
     1621 tttgatgaaa acttttatct taaacaagac aacaaaggtt ctttacttat tcctttaaaa
     1681 gatgagaatg gaaaattatg gtctgtgcaa agaatatttc caaatggaga taagatcata
     1741 ggagtcatta aaactcaaga agaaaaagat caaggcgtag aatatcttgc aaaaaaacaa
     1801 ggttgctttc atataatagg tgcaaaaagc ttggaacatt gcaaagaatt tattataaca
     1861 gaaggctttg ctactgctgc aactatatac aaggcactta ataagcctgt gataatgggt
     1921 gttgatgctg gaaatttatc gaaaattgtt gaaaccctaa aaaacaaatt tcaaaacact
     1981 cctattacct taatagccga taatgataaa aaaagagaat tgaaaggtct ttctaatgtc
     2041 ggagtggaaa ctgcaaaaga aattcaacaa aaattttcag atattaaagt tattattcca
     2101 aaaatcagca atcaagaagc agaacaagga ataagtgatt tcaatgatat ttttttaaat
     2161 aaagggattg atgaagtcaa aaaacaatta aatttcattg attttcataa taagcttaaa
     2221 tcttttaaat ctatggaaaa aacacaacct gaaaaagaga taactagata ataatagtta
     2281 ctctttgtaa tcataatata taaaaaatat ttt
//
LOCUS       DARGEY010000151         2309 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.151, whole genome shotgun sequence.
ACCESSION   DARGEY010000151 DARGEY010000000
VERSION     DARGEY010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2309
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.151"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            61..1437
                     /locus_tag="SF008_001653"
     CDS             61..1437
                     /locus_tag="SF008_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEG8233886.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYASIAGDISPKDFSLKAHQD
                     IFKAVVACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKILRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
     gene            1500..2102
                     /locus_tag="SF008_001654"
     CDS             1500..2102
                     /locus_tag="SF008_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233887.1"
                     /translation="MFYTFFVILKQGEKMLKQIAFGSIALTATGYGIKKLYEKLSKPE
                     RKFDTHAIVPSCKDVINTEEYKLKRELEVEQKKNQIQEFLCECMECYSGFSKYFNSKE
                     FLEFEQNFTSKNNHKTEFLLSSYKDQMIKVIDYAKKFKCLSAFLETQSEKNDLAVVKM
                     ISESMERKIQRFYLQTKFQTFPQYIFPSVWSSPMWDKQWE"
     gene            2093..2299
                     /locus_tag="SF008_001655"
     CDS             2093..2299
                     /locus_tag="SF008_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233888.1"
                     /translation="MGIILRILSLIAGFVTIVLMCGLYFIAFMVFVGIAILIFLSMQP
                     YPYNIIFCAIYLITILALVLWRKT"
BASE COUNT          830 a          289 c          430 g          760 t
ORIGIN      
        1 ataatttaag tttttttaga tagaattttt agaattaatt tatacttata aggaaattta
       61 gtgcagcaag agtattatga cttggattta gaacgagcta ttttaagcag ttgtatcatg
      121 agtgaagaag cttatgctag tatagcaggt gatattagcc caaaagattt tagtcttaaa
      181 gctcaccaag atatttttaa agcggttgta gcttgtagta ataacaaaga gcccatttct
      241 gtaagttttt taagaaaaca taaaaaaata gatgagcaaa ttttagcaga aattcttgcc
      301 actccttcta tgatagattt gcctgcttat gtaaatgaac ttcacgaaaa gtccgtaaaa
      361 agacaactct tgagttttgc acatcttttg ccaactcgta tcaatgaaga tcgtgctgta
      421 agtgaaatcg cagatgaaat tggtaaagaa atttttagca ttacaaatcg tgtgaattct
      481 agagatatta aagatgttga tatggtaata tcagaacttt ttgaagaatt taaaaagcaa
      541 aaaactttag aaaataaagg tattataggg cttgatacag gttttgaagg tctaaataaa
      601 atgacaaaag gttttaaagg gggtgaactt ataataatcg ctgcgcgccc aggtatggga
      661 aagacaactc tttgtttaaa tttcattgac aagattttaa gacaaaaaaa aggcgtggct
      721 ttgttttctc ttgaaatgcc tgcaactcaa atcatgcaaa gaatgctatc ttccaaaact
      781 tccattcctt tgcaaaaaat tttaactgca gatttaaatg atgatgaatg ggagcgttta
      841 ggagatgctt gtaatgatta tagtcaaaag aaattatata tttacgatag tggttatgca
      901 actattgctg atgtaagggc tattttaagg cgtttaaaat ctcaagatga aagtatagga
      961 ctttgtgtga ttgactatat agggcttatg atgagtaatt caaattttaa tgatagacat
     1021 ttgcaagtta gtgaaatttc aagaggactt aagcttttgg ctagggagct tgatatgcct
     1081 attatcgcac tttcacaact taatcgtggc ttagagcaaa gggcaaataa gcgtcctttg
     1141 atgagtgatt tgcgagaaag tggagctata gagcaagatg cggatgctat tttgtttgta
     1201 tatcgcgatg aggtttatag agaacaagaa gaaaaagaaa gagagaataa agctaaagct
     1261 gaaggcaaag cttatcaaag gctttttata ccaaatccta tgcaagaaaa tgctgaaatt
     1321 attgttggaa aaaatagaaa tggacctgtt ggaactatag aagttgtatt tttaaaagaa
     1381 aaatcttgtt ttgtagataa acctataggc tatgaaacta ctgaatttac aggctagctt
     1441 taataaaata agtttttaat attttaaagt tattttttac gacacaacct gtcgcaaggg
     1501 tgttttatac tttctttgtt attttaaaac aaggagagaa aatgttaaaa caaatcgcat
     1561 ttggtagtat agctcttaca gctacaggat atggcataaa aaaattatac gaaaaattat
     1621 ccaagccaga aagaaaattt gatacacatg ctattgttcc aagctgtaag gatgtaatca
     1681 acaccgaaga atataaactc aaaagagagc ttgaagtcga acaaaagaaa aatcaaattc
     1741 aagaatttct ttgtgaatgc atggagtgtt atagcggctt ttcaaaatat tttaattcta
     1801 aggaattttt agaatttgag caaaatttta cctctaaaaa taatcacaaa acagaatttc
     1861 ttttgtcgtc ttataaagat caaatgataa aagtgatcga ctatgctaaa aaatttaaat
     1921 gcttgagtgc ttttttggaa acacaaagcg aaaaaaatga cttagcggtt gtaaaaatga
     1981 taagtgaaag tatggagaga aaaatacaga gattttatct gcaaacaaaa tttcaaactt
     2041 ttcctcagta tatttttcct tctgtgtgga gttctcctat gtgggataaa caatgggaat
     2101 aatacttaga attttaagcc ttatagctgg ctttgttacc atagtgttga tgtgtggttt
     2161 gtattttata gcgtttatgg tttttgttgg catagcgata cttatttttc tttctatgca
     2221 accttatcct tataatataa tattttgtgc tatatattta atcacaattt tagcgctagt
     2281 gctatggcgt aaaacttaaa aatttcact
//
LOCUS       DARGEY010000152         2305 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.152, whole genome shotgun sequence.
ACCESSION   DARGEY010000152 DARGEY010000000
VERSION     DARGEY010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2305)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2305)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2305
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.152"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            27..956
                     /locus_tag="SF008_001656"
     CDS             27..956
                     /locus_tag="SF008_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 family protein"
                     /protein_id="HEG8233889.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSYNADNSNSSFIPFIGVELYYGNLIDNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYATGNREETDVDRYGFKISQLYESDFGKFTTSY
                     LFSKNKYDKDTIAQSSLKREGYYHEFELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAAGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQIILTGIGYKF"
     gene            complement(1006..>2305)
                     /locus_tag="SF008_001657"
     CDS             complement(1006..>2305)
                     /locus_tag="SF008_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEG8233890.1"
                     /translation="FRLFVKCAVPNVISMAFISFYYIVDGIFVGKYLGSDALAALALI
                     IPFIMMSFALADMIAIGSAVQISMHLGLGKKNLARKIFSSSMLIIFIISCFIGILEYF
                     LGPVLIDCLNVSDEIKTMAKECMFVFALFAPFTMLSFALDNYLRICGKTAYSMVMNVI
                     IALSNIVLDYIFIVELGWGLFSAALATCLGLVLGGIFGIFPFLFQNLELKISSLYMNL
                     KIFKNILYNGSSEFFGNISGSLYSIFANFVLLKISDTQAVAAFSIVLYIDSFIIMLII
                     AMGDAMQPVLSYNYAKKDFSRIKAIVKVVFFAGGFLSLFSIVLILIFGENLITLFTKE
                     NNQEFKTFAYTALMLFAFNYFFAWFNVLSGSFLTAFNKASFSLVLSLAQNLFIPLFFL
                     LLLSYFIGLNGVWLSPFFAEFCVLILACIFLKRIFKDLSL"
BASE COUNT          955 a          367 c          306 g          677 t
ORIGIN      
        1 aacaacaaac atttcaagga gaacatttga aaaaatattt attttcctgt gttttagcct
       61 ccattttaac ccaatcagct acggctgtag aatttcaaga aggttttagt ggaaatttaa
      121 gcataggtgt gggtgcaagg gatattaaaa gtaatatttc aaccttggca aacagcgatt
      181 atctaagcag ttacaatgct gataattcaa actcctcttt cattcctttt atcggtgtag
      241 aactttacta tggtaatctt atagataatg atagaatttt tattaaaaac tacaatggaa
      301 gagatatcag cggtatagct ttaggctacg aaagagctta tttagagcgt tttagcactt
      361 ctttttctgt gatttcctct ttaagagaaa aagcttatgc aaatccttat gcaacaggaa
      421 atagagaaga aactgatgtt gatagatatg gttttaaaat ctctcaactt tatgaaagtg
      481 attttgggaa atttaccact tcatatttat ttagcaaaaa caaatatgat aaagacacta
      541 tcgcacaaag ctctttaaaa agggaggggt attatcacga atttgaatta aactataatt
      601 atagcttatt aaacctaggg ttaaattatg attacaatga tgcagacgga aaagctcaaa
      661 gctattcaag atatggtttt agcataggga caaatttggc ttttgctaat gattacatct
      721 tcactccaaa tttaaatctt agtaaatatg aagcagcagg aactgatcct atcttccaca
      781 aaaaacaaga tggtaatata gttaagctta atctaaaagt tgttaaaaat caatttttgg
      841 gttataacgg actttatggt tttgcaaatt atggcataga aaaaagaaat agcgatatag
      901 gattttatga tgaaacctat caaattatcc taactggtat aggatataaa ttctaaaaaa
      961 ttataaaaaa agctcctttg ataaaattta aaaaagatct atctcctata aagatagatc
     1021 tttaaaaatt cttttaagaa aaatacaagc taaaatcaaa acacaaaatt cagcaaaaaa
     1081 tggacttagc catactccat ttaaacctat aaaataagat aaaagcaaaa gaaaaaacaa
     1141 aggtataaat aaattttgcg ccaaacttaa aaccaaagaa aagcttgcct tattaaaagc
     1201 tgtcaaaaaa gaaccactta gaacattaaa ccatgcaaaa aaataattaa aagcaaaaag
     1261 catcaaagct gtataagcaa aagttttaaa ttcttgattg ttttcttttg taaaaagcgt
     1321 gattaaattt tctccaaata tcaatataag cactatagag aataaagata aaaatccccc
     1381 tgcaaaaaat accactttta caatagcttt gattcttgaa aaatcttttt tagcatagtt
     1441 gtaactaagc acaggctgca ttgcatcacc catagcaata ataagcatta taataaaact
     1501 atcaatatat aaaactatag aaaaggctgc cacggcttga gtatcagaaa tttttaataa
     1561 aacaaaattt gcaaaaatac tatataaaga tcctgaaata ttgccaaaaa actcactgct
     1621 tccgttataa agaatatttt taaaaatttt taaattcatg tataggcttg aaattttaag
     1681 ctctaaattt tgaaacaaga aaggaaaaat tccaaaaata ccacctaaaa caagtcccaa
     1741 acaagttgca agagcagctg aaaataagcc ccaacccaac tcgactataa aaatataatc
     1801 aagcactata ttgcttaatg ctataattac attcattacc atactataag cagtttttcc
     1861 gcaaattctt aaataattat ccaaagcaaa agaaagcata gtaaagggtg caaacaaagc
     1921 aaaaacaaac atacattctt tagccatcgt tttaatctca tcgctaacat ttaaacaatc
     1981 aatcaaaaca ggtcctaaaa aatactctaa aattccaata aaacaagaga ttataaaaat
     2041 aatcaacata cttgagctaa atatctttct agctaaattc ttcttgccta aacctaaatg
     2101 catagaaatt tgcactgctg atcctatggc tatcatatca gccaaagcaa aagacatcat
     2161 gataaaggga ataatcaagg ctagtgccgc taaagcatca cttcctagat attttccaac
     2221 aaaaattcca tcaactatat aataaaaaga aataaaagcc atgcttataa catttggcac
     2281 ggcacatttt acaaaaagcc taaaa
//
LOCUS       DARGEY010000153         2264 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.153, whole genome shotgun sequence.
ACCESSION   DARGEY010000153 DARGEY010000000
VERSION     DARGEY010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2264)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2264)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2264
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.153"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..689
                     /gene="fliP"
                     /locus_tag="SF008_001658"
     CDS             <1..689
                     /gene="fliP"
                     /locus_tag="SF008_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HEG8233891.1"
                     /translation="AEVTIPTVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVM
                     TSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAE
                     KIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTIDDVPLTVLVPAFMIS
                     ELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLL
                     VQRLVESFVT"
     gene            complement(705..1475)
                     /locus_tag="SF008_001659"
     CDS             complement(705..1475)
                     /locus_tag="SF008_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEG8233892.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDERKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNTTINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDATRAILAPFQENPEFWGIAVQKGNAELKKE
                     LDEFIAESKKDGLFDSLGEKYLKDVKDTFKKNNLEFFF"
     gene            complement(1569..2174)
                     /locus_tag="SF008_001660"
                     /pseudo
     CDS             complement(1569..2174)
                     /locus_tag="SF008_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860491.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          721 a          418 c          302 g          823 t
ORIGIN      
        1 ctgctgaagt aactatccct acagtaaatt taagcttaag tgcacccaat acacctaatc
       61 agcttgttac tactttaaat atagtgattg ttttaaccat acttgcgctc gctccaagta
      121 tagtttttgt tatgacttct ttcttgcgtc ttattgtagt attttcattt ttacgacaag
      181 ctatggggac gcaaagtatg ccacctaaca ctattttggt aaccttggct ttaattttaa
      241 ctttttttat catggaacct gtagctacaa aatcctataa tgaaggtata aaaccttatt
      301 tagcagaaaa aataggctat gaagaggctt ttataaaagg agcaaagcct tttaaagatt
      361 ttatgcttaa aaatactcgc gaaaaagatt tagccctttt ttatcgcata cgcaatctac
      421 ccaatcccaa aaccatagat gatgttcccc ttacggtttt agttcctgct tttatgattt
      481 cagagcttaa aaccgctttt gaaatagggt ttttaatcta cctacccttt ttagtcatag
      541 atatggttgt aagctcagtt ttaatggcta tgggtatgat gatgctacct cctactatga
      601 tctctctacc ttttaaactc ttaatttttg tattagtgga tggatggaat ttgctagtgc
      661 aaaggcttgt ggaaagcttt gtaacctaag aaggaaaatc cttcttagaa aaagaattct
      721 aaattattct ttttaaaagt atctttaaca tctttaagat atttctctcc taaagaatca
      781 aaaagcccat cttttttgct ttctgcaata aattcatcaa gctctttttt aagttctgca
      841 ttgccttttt gtactgctat accccaaaac tcaggatttt cttgaaaagg cgccaaaatg
      901 gctctagttg catcttgatg tttttgccaa gtgcgataaa tcgtaagttg atcataaaaa
      961 aatccatcag ccttaccttg aatcacttcc aaaatagcag cattttcttt atcaaataaa
     1021 ttaatagttg tattttttaa atttttaacc gcatataaat gtcctgtaga gccacgcttt
     1081 aaagccaaaa ctttgccctt tttatctaaa tctttgatat ttgtaatatc agagttcaaa
     1141 ggagttaaaa tagccaaatt tgccttagca taaggaatgc taaaatccac cactttcttt
     1201 ctctcatcgg taattgtcat agaggacata ataagatcta tcttggctgt ttttaaagca
     1261 ggtattaaac catcccaagc gatatttttt actacaagtt tatagccgtt tttctttgca
     1321 aaagcttcta aaaaatccac gctaattcca cttgctttgc ctgttttatc gctcatttca
     1381 aaaggcggat atccaagctc cattcctaca accaaatctt ttgcactcaa atttaaagca
     1441 aaaaaagaga taaaaatcaa aataattttt ttcataattt cctttcaaaa ttttttgtaa
     1501 aaaaattata ctaattttat cttattttgt tattagcaat ttgtttcaaa cttaaaaaat
     1561 taaaacttct aaaccctagt ttgccccata agattattta atctatccat tatagaatca
     1621 gcaaaagaat ttatactttc actgcttgct ttccaaccat tagcttttgc ttgatgaaat
     1681 tctctatcaa aagagattcc actgcctacg tatacatttt gccatttaac tcctttttcc
     1741 attacataaa tacctgcatc aagccagcca tcttgtgcat aaccttttaa taaacttgca
     1801 aaatcaactt ttcctgtcat gatgtcgtct aaggaaacgc taaaagaagg atttgctttc
     1861 atttctagct caagttttgc ttcacgaact tttgcttcag ggctcaaaac aacttgattt
     1921 gaagatggaa taggcgaata agactttaaa aaactcataa ataaagcttc tttagaataa
     1981 cttccatctt cattttgtgg ataaactgac atatcaggat taaattgcca atcttcacct
     2041 ttagaaacat ttttgatttc ttccaaagat aaaccaaaac tatgtccatt tatgccatct
     2101 attaaagatc ctgattgtat atataaactt tcagcttctt tcatttgttc aggggtttga
     2161 taaatatttg taatagaaga atttgaaaaa tctcttaggt gagtgatatt cattctattg
     2221 cttggatcat taaaatccat cgattttatt ccatttatag cata
//
LOCUS       DARGEY010000154         2259 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.154, whole genome shotgun sequence.
ACCESSION   DARGEY010000154 DARGEY010000000
VERSION     DARGEY010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2259
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.154"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            26..349
                     /locus_tag="SF008_001661"
     CDS             26..349
                     /locus_tag="SF008_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEG8233893.1"
                     /translation="MQKFLTIISAINDESRILILHHLLRYKELCVCDLQELLNMGQSR
                     LSRHLKILKDAGFLYVRRQETWAYYGINNELLKLHLDLFENIKNLELKNVIKKNENII
                     TQICP"
     gene            complement(357..788)
                     /locus_tag="SF008_001662"
     CDS             complement(357..788)
                     /locus_tag="SF008_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEG8233894.1"
                     /translation="MAYTIKKVEKETKISAHTLRFWAKKGLFPFVQKDENSVKYFSKS
                     DIEWVKWIEWLRISGMPIEQIKHYIKLCSLGIKTAKERQEMLKQTKKKLQNQIKTLKE
                     SEKVLSKKIKIYEEMLANEVDGFNPESKDYQPCDKLYKFKG"
     gene            868..>2259
                     /locus_tag="SF008_001663"
     CDS             868..>2259
                     /locus_tag="SF008_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG8233895.1"
                     /translation="MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKT
                     SLYESTLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVG
                     PILKYYRHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTND
                     IFVTPAYLDTILKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVANTPGNTFLFDQ
                     KNKIFAATNKELLNPSIDHSPVLNAYKLNGDNNFFSYKLNNEERLGACTKVFAYTACI
                     TESADIINKPIFKAAYIQVIALIVMISISVILLYFIVSKYLSPLAAIQTGLTSFFDFI
                     NYKTKNVSTIEVKSNDEFGQISNAINENILATKRGLEQDNQAVKESVQTVSVVEGGNL
                     TARITANPRNPQLIELKNVLNKLLDVLQARVGSDMNAIHKIFEEYKSLDFRNKLENAS
                     GSVELTTNALGDEI"
BASE COUNT          832 a          331 c          283 g          813 t
ORIGIN      
        1 tattaattta atttaaggaa ataaaatgca aaaattttta accattattt cagcaatcaa
       61 tgatgaaagt aggattttga ttttacatca tcttttaaga tacaaagaac tttgtgtttg
      121 tgatctacaa gagctcttaa acatgggtca atcaagactt tcaagacatt taaaaatttt
      181 aaaagatgca ggttttttgt atgtaaggcg tcaagaaact tgggcgtatt atgggattaa
      241 taatgagctt ttaaagctgc atttagatct ttttgaaaat atcaaaaatt tagagcttaa
      301 aaatgttatt aaaaaaaatg aaaatattat tacccaaatt tgcccttaat ataaaatcaa
      361 cccttaaact tatacaattt atcacaaggt tgatagtcct tgctttctgg attaaaccca
      421 tcgacttcat ttgcaagcat ttcttcataa atttttatct ttttgcttaa aactttttca
      481 ctttctttta atgttttaat ctggttttgt aattttttct ttgtttgctt taacatctct
      541 tgtctttctt tagcagtttt tatacccaaa gagcaaagtt ttatataatg tttgatttgt
      601 tctattggca tacctgaaat tctaagccat tctatccatt ttacccattc tatatcgctt
      661 tttgaaaaat atttcacact attttcatct ttttgaacaa aaggaaacaa acctttttta
      721 gcccaaaatc ttaaagtatg agcactaatt tttgtttctt tttctacttt ttttatagta
      781 taagccatat tttctccttt atttaagata aaaataaaaa tttattttat ttttttgtga
      841 taaaataata gccaaattat tagttttatg ctaaaaataa caaagattaa aaggaaaata
      901 atgaatagta ttaaaatcaa actttccctc attgcaaatt taattgcaat ttttgcctta
      961 attgttctag gtattgtaag tttttatttt acaaaaacct cactatatga aagcactctt
     1021 aaaaatcaaa ctgatctact taaagtcaca caatctaccg ttgaagattt ccgttccaca
     1081 aatcaatctt ttactagagc tttagaaaaa gatatcgcga acttacctta tcaatcttta
     1141 atcactgaag aaaatattat taacaatgtt ggtccaatat tgaaatatta tcgtcatagt
     1201 ataaatgcac taaatgttta tttaggttta aacaatggaa aagttttact tagtcaaaaa
     1261 tctaatgatg caaaaatgcc tgaattacgt gatgatttag atataaagac aaaagattgg
     1321 tatcaagaag ctttaaaaac aaatgatatt tttgttacac cagcatattt agatacaatt
     1381 ttaaaacaat atgtaataac gtattctaaa gctatttata aagatggcaa aatcatagga
     1441 gtactgggtg tcgatatacc atcagaagat ttgcaaaatt tagttgcaaa cactcctgga
     1501 aatacttttt tatttgatca aaaaaataaa atatttgcag caaccaataa agaattatta
     1561 aatccatcca ttgatcattc tcctgttcta aatgcatata aactcaatgg tgataacaac
     1621 ttcttctctt ataagttaaa taatgaagaa agacttggag cttgtactaa agtctttgct
     1681 tatacagctt gtattaccga aagcgctgat attataaata aacctatatt taaagcagca
     1741 tatatacaag ttatagcctt aattgttatg atatctatta gcgtcatcct cctttatttc
     1801 atcgtatcaa aatacctctc cccacttgca gctatccaaa caggtttaac ttcattcttt
     1861 gattttatca actataaaac aaaaaatgtt tctactatag aagtaaaaag caatgatgaa
     1921 tttggacaaa tctcaaatgc tatcaatgaa aacattcttg ctactaaaag aggcttagaa
     1981 caagacaatc aagccgttaa agaatcagtt caaaccgtat cagttgtaga aggtggtaat
     2041 ttaacagcaa gaattactgc taatccaaga aacccacaac ttattgaact taaaaatgtt
     2101 ctaaataaac ttcttgatgt tttacaagct agagtaggtt ctgatatgaa tgctattcat
     2161 aaaatttttg aagaatacaa aagcttagac tttagaaata aattagaaaa tgctagcggt
     2221 agtgtagaat taactactaa tgctttaggt gatgaaata
//
LOCUS       DARGEY010000155         2196 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.155, whole genome shotgun sequence.
ACCESSION   DARGEY010000155 DARGEY010000000
VERSION     DARGEY010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2196)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2196)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2196
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.155"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..282
                     /locus_tag="SF008_001664"
     CDS             <1..282
                     /locus_tag="SF008_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEG8233896.1"
                     /translation="YKKDLNLLKKFPNLYIKLSTPDDFSQETPKEFIFELFAFLKENF
                     SEDKFIFGSNYPVSNLSPKQWIELIIQSKVFKDLDLIFYKNALSIYKGE"
     gene            283..600
                     /locus_tag="SF008_001665"
     CDS             283..600
                     /locus_tag="SF008_001665"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HEG8233897.1"
                     /translation="MQRYGQIIKIKKEKIQKYKNLHAKPYERVCEMIKECNIQNYSIY
                     LFGEYLFAYFEYVGADFEADMAKMARDENTQKWWKVTDPCQISLGYAGQKWLNMEEVF
                     HLD"
     gene            614..2057
                     /gene="aldA"
                     /locus_tag="SF008_001666"
                     /pseudo
     CDS             614..2057
                     /gene="aldA"
                     /locus_tag="SF008_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874345.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
BASE COUNT          798 a          257 c          447 g          694 t
ORIGIN      
        1 tacaaaaaag atttaaatct tttgaaaaaa tttccaaatt tatatatcaa gctttctact
       61 cctgatgatt tttcacaaga aactcctaag gaatttattt ttgaactttt tgctttttta
      121 aaagaaaatt ttagcgagga taagtttata tttggcagta attatccagt gtctaatttg
      181 tctccaaagc aatggattga gttgattata caaagtaagg tttttaaaga tttggacttg
      241 atattttata aaaatgcttt atcaatttat aaaggagaat gaatgcaaag atacggtcaa
      301 atcataaaga taaaaaaaga gaagatacaa aaatataaaa atcttcatgc aaagccttat
      361 gaaagggttt gtgagatgat taaagaatgt aatatacaaa attattccat ttatttgttt
      421 ggagaatatt tatttgcata ttttgaatat gtgggtgctg attttgaagc agatatggct
      481 aagatggcaa gagatgaaaa cacgcaaaaa tggtggaaag taacagatcc ttgtcaaata
      541 tctttaggtt atgcaggaca aaagtggcta aatatggaag aagtgtttca cttagactaa
      601 aaaaggagaa aaaatgacaa cttatttaaa ttatattgat ggagaattta tctcacataa
      661 tggggatttt atcgaagttt taaatccagc tactaaagaa gtaatttcaa aagtagcgag
      721 tgcttcttta gaagatgcca aaagagcgat tgaagcagcc aaaaaagcac aaaaatcctg
      781 ggagactaag ccagcaattg agagagcaaa tcatttaaga gaaatagcta gtttaatacg
      841 caaaaatgct aatttcttaa cagaaatttt aatgcaagag caaggaaaaa ctagagcttt
      901 agccagcgtg gaggttaatt ttgcagcaga ttatatggat tatacggccg aatgggctag
      961 aagatatgaa ggtgaaatca tacaaagcga tagagctaat gagcatatat atttatatat
     1021 ataaaagtgc tattggggta attggtggaa ttttaccttg gaattttcca tttttcttaa
     1081 tcgcaaggaa gatggcacct gctttactaa caggaaatac catagtgata aagccaagta
     1141 gtgaaactcc aaacaatgct tttgaatttg caaaacttgt ttcgcaaagt tctttaccaa
     1201 aaggtgtgtt taatttggtt gcaggtaaag gtagtgtagt aggatatgaa ttatcaagca
     1261 atgaaaatat aggcatggta agtcttacag gaagtgttga agcaggggct agagtaatgg
     1321 aagctgcagc taaaaatatc ataaaggttt ctttagaact tggcggaaaa gctcctgcta
     1381 tagtgtgtaa agatgcggat attgatttgg cagtagaagc gattaaggca agtcgaattt
     1441 gcaataatgg acaggtttgt aattgtgccg aaagagctta tgtgcataca agcatttatg
     1501 atgaatttgt agataaattt gtaaaagcca tgagtaaggt aagtgttgga aataccttaa
     1561 aaggtgattt tgatatggga ccattggtca atcaagcagg ggttgataat gctttagcaa
     1621 tgcttcaaag agctacagct aaaggagcag ttgtggaatg cggtggaaaa atcactgata
     1681 caagtgggta ttattttcct gcaagtgttc ttactaatgt taagcatgag gatgaaatta
     1741 tgcaaaaaga aatttttgct cccattttgc ctattgctaa atttgataca cttgatgaag
     1801 ctattgatat ggcaaatgat tgtgaatatg gtcttacaag ttctatttat acacaaaatt
     1861 tagatatagc aatgagagct agcagagaaa ttaaatttgg tgaaacttat attaatcgtg
     1921 aaaattttga ggctatgcaa ggttttcatg caggctttag aaaaagtggc ataggcggag
     1981 ctgatggaaa acatggtctt gaagaatatt tagctaccca tgtggtatat ttgcagtata
     2041 atactaataa acaatgattt ttatcctatc taaattttta gataggagtt attataatct
     2101 tggaatcaag tatgatgctt tataactatg gattaaacac ttttttagta atttcttaaa
     2161 atcaattttg gaatttttca ttttgtctaa aatgag
//
LOCUS       DARGEY010000156         2169 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.156, whole genome shotgun sequence.
ACCESSION   DARGEY010000156 DARGEY010000000
VERSION     DARGEY010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2169)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2169)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2169
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.156"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(27..902)
                     /gene="zupT"
                     /locus_tag="SF008_001667"
     CDS             complement(27..902)
                     /gene="zupT"
                     /locus_tag="SF008_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002919197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HEG8233898.1"
                     /translation="MQFTFEQIFIAMLLTLFAGFSTAIGSIIAFFSRKDDLRVLSLGL
                     GFSAGVMIYISFMEILPTALKDFKNYYNSHWAELLGLACFFGGILISLLIDKLIPEDV
                     NPHEPKEDLSELKICPLPQKGQNPPKFHPGEKLHQINTKALKRTGIFTALAIAIHNFP
                     EGFATFISSLDNLTLGIAIAIAVAIHNIPEGLAVSLPIYHATGDKKKAFIYSALSGFA
                     EPLGAFVGALILLPFIGDLTLAISFAVIAGIMVFISLDELLPAAKTYDKAHDSLYGLI
                     AGMMIMALSLNLLEY"
     gene            1098..>2169
                     /locus_tag="SF008_001668"
     CDS             1098..>2169
                     /locus_tag="SF008_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEG8233899.1"
                     /translation="MQKMNSGKSVGVSVKLTLWVGILVVLILAITSTVSYFDAKNHTY
                     ELLKENQLKTMDDVKVTFENYSKSKQKAIEVLAYESAKKLEDENISLLLDSFKKAFDF
                     DIVFIAFDKNNKMLLSNGTILDKKSNFDITKQIWYQEAKNNKGITITQPYKSPIDQEI
                     GITYVFPIYKNNQLIAFVGGDYNLDKFSKDVLSLGHSSTTYAAVYDSEGRIIFHEVLD
                     RILTKNTLSVNIANAIKENPEYIDPNKRDILFPVFDDKGIKYETMCDTSSNGLYRICA
                     VTLDSNYTSAVNSILMKQAIVGIIAIIIALILIRFLISRSLSPLAAIQTGLTSFFDFI
                     NYKTKNVSTIEVKSNDEFGQISN"
BASE COUNT          843 a          335 c          305 g          686 t
ORIGIN      
        1 aaacacttaa aaacaaaaaa taattttcaa tattcaagta aatttaaact taaagccatt
       61 atcatcattc ctgcgataag tccatataaa ctatcatgag ccttatcata agtttttgca
      121 gcgggcaaaa gctcatcaag agatataaaa accataattc ctgcaatcac agcaaaactt
      181 atagctaaag taagatcgcc tataaaaggc aataaaatca aagctccaac aaaagcaccc
      241 aaaggctctg caaaacccga aagagctgaa taaataaaag cttttttctt atctcctgta
      301 gcatggtaaa ttggcaaact cacagccaaa ccttctggga tattgtgtat agccacagct
      361 atagctatag caattcctaa agtaagatta tcaagacttg aaataaaagt agcaaaacct
      421 tctgggaaat tatgtatagc aatagccaaa gctgtaaaaa tccctgtacg ttttaaagct
      481 ttagtattga tctgatgcaa cttttctcca ggatgaaatt tcggaggatt ttgtcctttt
      541 tggggcaagg gacaaatttt taactcgctt aaatcctctt taggctcgtg aggattgaca
      601 tcttcgggga ttaatttatc aatcaataaa gatattaaaa ttccaccaaa aaaacaagcc
      661 aatcctaaaa gttcggccca atgtgaatta taataatttt taaaatcttt aagagcagtg
      721 ggtaaaattt ccataaaaga aatgtatatc attactccag ctgaaaaacc aagccctaaa
      781 gaaagcaccc ttaaatcatc ttttctagaa aaaaaggcta ttatagaacc tatagccgta
      841 gaaaaacctg caaaaagagt caatagcatt gcgataaaaa tttgttcaaa tgtaaattgc
      901 atttattaat tcttaatata taattatagt gttttataat tatatatatg taaaaagtta
      961 ataaatggca aaaagtataa aaaatactaa aatttttaag aatatttatg taaaaaagtt
     1021 catttttatg catttctttc tctatatttc tgctataata ataattttat ttccaaaata
     1081 taaatatagg agttataatg caaaaaatga attcaggcaa atccgttgga gtttcagtca
     1141 aacttacgct gtgggttgga attttagttg tattaatttt agcaatcaca agtaccgtta
     1201 gttactttga tgccaaaaat cacacatatg aattactaaa agaaaatcaa ttaaaaacta
     1261 tggatgatgt taaagtaact tttgaaaact attccaaaag caagcaaaaa gctatagagg
     1321 ttctagcata tgaaagtgct aaaaaattag aagatgaaaa tatttcactg cttctagatt
     1381 cttttaagaa ggcgtttgat tttgatattg tttttattgc gtttgataaa aacaacaaaa
     1441 tgcttttgtc aaatggaaca attttagata aaaaatcaaa ttttgacatt acaaaacaaa
     1501 tttggtatca agaagcaaaa aataacaaag gcatcacaat aactcaacca tataaatccc
     1561 ctatagatca agagattggt ataacttatg ttttccctat ttataaaaat aatcaactta
     1621 tagctttcgt tggaggcgat tacaatctag ataaattttc caaagatgta ttatctttag
     1681 gacactcatc aactacttat gctgctgttt atgactctga aggaagaatt atttttcacg
     1741 aagtgcttga tagaatttta acaaaaaaca ctttaagcgt taatattgct aacgccataa
     1801 aagaaaaccc tgaatatata gatccaaata agagagatat tctttttcct gtatttgatg
     1861 ataaaggtat caaatatgaa acaatgtgcg atacaagttc caatggatta tatcgtattt
     1921 gtgctgtaac tttagatagt aactatactt ccgctgttaa ttccatttta atgaaacaag
     1981 ctatagtcgg tattatagct ataatcatag ctttaatctt gattagattt ttaatcagca
     2041 gaagcctctc cccacttgca gctatccaaa caggtttaac ttcattcttt gattttatca
     2101 actataaaac aaaaaatgtt tctactatag aagtaaaaag caatgatgaa tttggacaaa
     2161 tctcaaatg
//
LOCUS       DARGEY010000157         2152 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.157, whole genome shotgun sequence.
ACCESSION   DARGEY010000157 DARGEY010000000
VERSION     DARGEY010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2152)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2152)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.157"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(108..467)
                     /locus_tag="SF008_001669"
     CDS             complement(108..467)
                     /locus_tag="SF008_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233900.1"
                     /translation="MVIFKNILLFLFFSTYLLAQEDFTPLEQCTYENEKFWIKILNLC
                     PEGNITCDKVVYVGVNKNNGKYIVLNGKSISDVNMNFKGYVFKNGIYEYNIFNNFLYI
                     SKNKQIIQEYRLKLCEK"
     gene            complement(496..1083)
                     /locus_tag="SF008_001670"
     CDS             complement(496..1083)
                     /locus_tag="SF008_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HEG8233901.1"
                     /translation="MVVNGVSENKIKAKNKDVNINNGTKYTNTTKSNNISSSENNTQE
                     KITHLSNDGQNLLKNIEKLRLKPYNDQNGKEITSHVKGVTIGYGHLIGQNEWDLYKNG
                     ITLREADKLFKSDLLPFENAVKNSINSSLAQNEFDDLVILCFNIGIDNFKNSFVAKII
                     NAEKTGYKTLKEAWMAWNKSQNKVMQGLINRRNAE"
     gene            1574..>2152
                     /locus_tag="SF008_001671"
     CDS             1574..>2152
                     /locus_tag="SF008_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004307518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
                     /protein_id="HEG8233902.1"
                     /translation="MDNKQQINKLRDMAELAQASYGYFHYVDNKFDIKDEDKIVTFEN
                     VLDITYKNSKIIDERGFKIGKLDGDFSPLQAKQFFSRYDLLIHQPNTESSFSATLFYD
                     KQKDEFIIGFRGTEVSFKDLKATWETALDTTQDLVLSLNGNLQSSFLLEFLEQVNKII
                     KNKHKRIIFVGHSLGGYLAQMALIYCDIKYKDK"
BASE COUNT          750 a          308 c          272 g          822 t
ORIGIN      
        1 ttaattagga tttttataac tttaaaaact tcttgtaatt cttattgcat ctttttaact
       61 ttttgcatat tctaggtatt tgttgttgct tgctgccttt gttgcgtcta tttttcacat
      121 aatttcagac gatattcttg tataatctgc ttgtttttag aaatatataa aaaattatta
      181 aaaatattgt attcataaat accattttta aaaacatatc ctttaaaatt catatttaca
      241 tcactaatag acttaccgtt taagacaata tattttccat tatttttatt gacacccaca
      301 tatacaacct tatcacaagt tatattaccc tctggacata gatttaaaat ttttatccaa
      361 aacttttcat tttcataggt acattgctct agtggagtaa aatcctcttg tgctaacaaa
      421 taagtactaa aaaataaaaa caataatata tttttaaaaa ttaccatttt tcataacctc
      481 cttgagtgta aagctttatt cagcatttct cctattaatt agtccctgca ttactttatt
      541 ttgacttttg ttccacgcca tccaagcttc ctttaatgtt ttgtaacccg ttttctctgc
      601 attgatgatt ttggcaacaa aagagttttt aaaattatca atccctatat taaaacataa
      661 tataaccaag tcatcaaatt cattctgtgc caaggaagag tttattgaat tttttacagc
      721 attttcaaag ggtaacaaat cgcttttaaa caatttatcc gcttctcgta aagtaatacc
      781 atttttatac aaatcccatt cattttgccc tataagatgt ccatatccga tagttacacc
      841 tttaacatgt gaagtaattt cttttccatt ttgatcatta taaggtttga gtcttagctt
      901 ctctatattt tttaaaagat tttgaccatc attgcttaga tgagtgattt tttcttgggt
      961 attgttttca ctagaactta tattattgct ttttgtagtg tttgtgtatt ttgtgccatt
     1021 atttatattt acatctttat tttttgcttt tattttgttt tcactaaccc catttaccac
     1081 cacaaattta ccaacataaa gctcttgttt tctatcttca tcttctaaga tttcatctag
     1141 tcaaggtgat agaatgaaaa aatataaaaa gattttagtg ctattatcac caataatttt
     1201 aattatatta ttttataccc ctttttatat cctagctatt gggaatttag aaggttatgt
     1261 aaattaaata attatccaaa aagtgaggaa aaatataata gaatcttagc ttattttgat
     1321 aagagtttag atggtagtat aggaaaaaat ggttatgcaa aaataggtta tggtaataga
     1381 atagatttag gtatatatat ttattataag aatccaaata acaaaacatt aacttttaaa
     1441 aatattaata aaatatattt tagaccaata tggaaaaact atgcaccaaa tatttatggt
     1501 aatgagggta atatggattt tagattaaag cttgacggtg aaatagattg cagaagctta
     1561 ttaggagaat tatatggata ataaacaaca aatcaataaa ctaagggaca tggcagaact
     1621 tgcacaggca agttatggat attttcatta tgttgataat aaatttgata taaaagatga
     1681 agataaaatt gttacctttg aaaatgtttt agatattacc tataaaaact ctaaaattat
     1741 tgatgaaaga ggatttaaaa tcggcaagct cgatggcgac ttctccccac tccaagctaa
     1801 acaattcttt tctcgctatg atttattaat ccatcaacca aatacagagt caagcttttc
     1861 tgctactttg ttttacgata aacaaaaaga tgaatttata ataggattta ggggaactga
     1921 agtttctttt aaagatttaa aagcgacatg ggaaaccgct ttagatacaa cccaagactt
     1981 agtcttatct ctcaatggca atcttcaatc ttcttttctt ttagaatttt tagaacaagt
     2041 aaataaaata atcaaaaata aacacaaaag aattatattt gtaggacatt cattgggtgg
     2101 gtatttagct caaatggctt tgatatattg cgatattaaa tataaagaca aa
//
LOCUS       DARGEY010000158         2144 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.158, whole genome shotgun sequence.
ACCESSION   DARGEY010000158 DARGEY010000000
VERSION     DARGEY010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2144)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2144)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.158"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            51..1346
                     /locus_tag="SF008_001672"
     CDS             51..1346
                     /locus_tag="SF008_001672"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEG8233903.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFSISWQHYYIQSENLKFHRQMALKLVSEKKAFACFCSEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AMTYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLVILGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAPLAKFYT
                     QEASTIKELKEKMQAIFNAKNFGEFETECKILKELLKDIELFENYEDFKNELLNKSNL
                     KGKKFFMPLRIILTGNIHGPELSDLYPYIKNFIHELARI"
     gene            1349..1630
                     /locus_tag="SF008_001673"
     CDS             1349..1630
                     /locus_tag="SF008_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HEG8233904.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIITALLSWVNPDPYNPIVQ
                     ILYKLSYPAYALVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            1627..>2144
                     /locus_tag="SF008_001674"
     CDS             1627..>2144
                     /locus_tag="SF008_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEG8233905.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYTANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLVQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGF
                     FKLYNYSKKYDL"
BASE COUNT          809 a          317 c          311 g          707 t
ORIGIN      
        1 ataaattttt ctgttataat aagcttttaa ataattttaa aggctataag atgtaccgtt
       61 ttgcaccttc tcccacaggt gatatgcaca taggaaattt acgcgcagca atttttaatt
      121 atatctgtgc aagacaaaaa aatatggatt ttatcttacg tattgaagat actgataagg
      181 ctagaaatat agcaggaaaa gaagaagaaa tcaaagaaat tttaaatctt tttagtattt
      241 catggcagca ttactatata caaagtgaaa atttaaaatt ccatcgccaa atggctttaa
      301 aacttgtaag cgaaaaaaaa gcttttgctt gtttttgcag cgaagaagaa cttgaagcaa
      361 aaaaagagct ggctaaaaaa caaggtaaag cttatcgcta cgatggcact tgtgaaaaac
      421 tagccgatat tgatgtttta gaatgtgaaa aaccctttgt tatccgtctt aaaaaaccta
      481 ctcatactat gaaatttact gattttatca aaggcgagct tagttttgag cctgaaaaca
      541 tagactcttt tgtgattatg agaacggata aaactccaac ttataatttt gcttgtgcgg
      601 ttgatgatat gcttgaaaat gtcacttgta ttatacgcgg agaagatcat gtttcaaaca
      661 ctccaaaaca agaacatatc cgcgcaagct taggttataa taaagccatg acttatgcac
      721 acttgcctat cattttaaac gaagaaggtg ttaaaatgag taaaagagaa gcacattctt
      781 ctgtaaaatg gctacttgaa agtggaattt tacctagcgc aatcgcaaat tatcttgtca
      841 tactaggcaa taaaactcct tgtgaaattt ttaccttaga agaggctata aaatggtttg
      901 atatttctaa agtttcaaaa gctcccgcaa gatttgatct taaaaaactt ttgcaaatta
      961 atcgcgaaca tatcaaaatg ataaaagatg atgagcttaa taaaatttta gatttaaaca
     1021 aagatcttgc accacttgct aaattttaca ctcaagaagc aagtactata aaagaactta
     1081 aagaaaaaat gcaagctatt tttaacgcaa aaaattttgg cgagtttgaa acagaatgta
     1141 aaattttaaa agaactctta aaagatattg aactttttga aaattatgaa gattttaaaa
     1201 atgaactttt aaacaaaagc aacttaaaag gtaaaaaatt tttcatgcct ttaaggataa
     1261 ttttaacagg aaatatccac ggacctgagc ttagcgatct ttatccttat attaaaaatt
     1321 ttattcacga attagcaagg atttaactat ggttatagac tcttttatta tttctatttt
     1381 tcaagtacta caaattgtca ttaacattta tacttggatt attatcatca cagcacttct
     1441 aagctgggta aaccctgatc cttataatcc tatagtgcaa attttatata aactaagcta
     1501 ccctgcttac gccttagtta gaaaaattcc aacacgcatt ggtaatattg atcttgcgcc
     1561 tttgattata gtcttagcat tgcagtttct tggcattttt cttgggaata tcttaaggag
     1621 tatattgtga taaaaaaaat actcgttttt ttatttattt tttcaagttt aaatgctaca
     1681 caatatagta tagaaaaact caaaaaggaa gaaaattcac ttgctaagga ttattatatt
     1741 tataggcttt tagaaaaaaa taaaatcagt aaaaaagatg cacaggattt aaattctcat
     1801 atttttcgct atataggaaa aattaaatct gaacttgaaa aaatcatccc tttaaagcct
     1861 tatatcaacc caaaatatgc taaatgctat acctatacag caaatactat cttagatgca
     1921 aatttaactt gtcaaagtgt gcgcttaaat tcattagttt ttatagcgag tctaaattcc
     1981 aaagaccgaa ctactttagt tcaaaccttt aaaaatcaaa gacctgattt gacaaattta
     2041 ttgctagctt ttaatacttc tgatcctatg agctatatag tacaaaaaga agatattaat
     2101 ggttttttta aactttataa ttattctaaa aaatacgact taga
//
LOCUS       DARGEY010000159         2102 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.159, whole genome shotgun sequence.
ACCESSION   DARGEY010000159 DARGEY010000000
VERSION     DARGEY010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2102)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2102)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2102
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.159"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            42..464
                     /gene="cgb"
                     /locus_tag="SF008_001675"
     CDS             42..464
                     /gene="cgb"
                     /locus_tag="SF008_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HEG8233906.1"
                     /translation="MTKEQIQIIKDCVPILQKNGVDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRNFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAEFYINIEKKLYDK"
     gene            complement(484..>2102)
                     /locus_tag="SF008_001676"
     CDS             complement(484..>2102)
                     /locus_tag="SF008_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HEG8233907.1"
                     /translation="ELLKQNKLKLISFLLFSFITSAVGVLTLVFINDYLLKNAQNIPI
                     FYFIVLLLIFFISSTIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGKARILA
                     SLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSPQIFALCVVWIMVIFITNNFL
                     MMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARLKKKNS
                     TLGNLFNNLSNNWTNVTLLVLVGVEFYLALKFEWASVADATTIALSILFLRTPLVSMI
                     GSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENFHLNPV
                     NIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNLDEYRSLIS
                     AVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKDKTSVKDNELTLTKLSTGQKKRLA
                     MLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAYFDSAD
                     RIFLAQNGEISELKGENIKELAKNLVEKFD"
BASE COUNT          804 a          338 c          263 g          697 t
ORIGIN      
        1 taagatatat aatatctctt ttacattaaa aaggagaaat tatgacaaaa gaacaaatac
       61 aaatcatcaa agattgtgtg cctattttgc aaaaaaatgg agtagattta accaatgagt
      121 tttataaaat aatgtttaat gattatcctg aggtaaaacc tatgtttaat atggaaaaac
      181 aaatttcagg agaacaacca aaagctttag cgatggcgat tttaatggca gctaaaaata
      241 tagaaaattt agaaaatatg agaaactttg ttgataaagt tgccataact catgttaatt
      301 taggggttaa agaagagcat tatcctatag ttggagcttg ccttttaaaa gctattaaaa
      361 atcttttaaa tcctgacgaa gctactctta aagcttggga agttgcttat ggaaaaattg
      421 ctgaatttta tatcaatata gaaaaaaagc tctatgataa ataatataag cccattttgg
      481 gctttaatca aatttttcta ctaaattttt agctaattcc tttatattct caccctttaa
      541 ttcgctgatt tcaccatttt gagccaagaa aattctatca gcactatcaa aatatgcatc
      601 atcatgtgtg atagcaaaga ttgttttacc ttgctctttt agcaaaggta aaagtttttt
      661 ataaaaaaat cttctaaaaa caggatcttg atcagccgcc cattcatcaa gcactaaaat
      721 atccctttct tcaagcaagg ctataagcat agctaaacgc tttttttgcc ctgtagaaag
      781 tttggttaag gtcagttcat tatctttgac acttgtttta tctttaagtt ctaaaaactc
      841 caaccaaaaa gcaatttttt cttcgcttgc aaaattttct ttatttaagg ttttagtaaa
      901 aagatgaaaa tcgctaaaaa cagcagaaat aagagatcta tactcatcta aatttttatc
      961 atctataagc gtatcatcaa cataaattcc gcctttgctt ggcttaaaaa gtcctgtcaa
     1021 aagcatacaa aaagtggatt taccacttcc atttttacct attaaaaata ccaattcacc
     1081 ttttttaagt tctatattta caggatttaa atgaaaattt tcttcataag caaattgagt
     1141 atttctaaaa gaaatttttt tccattcact gatataatgt gtttttttaa aaccttctat
     1201 ataatcatct aattccaatt ttgcgatctt atccaaagcg atttttgcca aaagcaaagt
     1261 aggaaaagat cctatcatag atactaaagg ggttcgtaaa aacaaaatag aaagagctat
     1321 agttgtagca tctgcaacac ttgcccattc aaattttaaa gctaagtaaa actctacacc
     1381 cactaaaacc aaaagagtta catttgtcca gttgtttgag agattgttaa aaagattacc
     1441 taaagtacta tttttctttt tcaatcttgc attattttca aattcatctt cataataaag
     1501 cttagctcta tcacgattga tcaaaagttc tttatgtcca tctagtatat tttggtaatt
     1561 attttgcaaa gcatcatcat tttcccttgc ctttctaaaa tactgatata ctttcatcat
     1621 caaaaaatta ttagtaataa aaataaccat aatccatacc acacacaaag caaaaatttg
     1681 tggtgaaaga taacataaat aaacactagt gcataaaatc aatatacttg attgtaaaaa
     1741 atcaggcaat cttaaaagcc caaaagatat atttctcaca tcacttccca aagaagctaa
     1801 aattctagcc ttacctactt tagcgactct taacaaaggg gtgtctaaga tctgctttac
     1861 tacgcgcctt tgcattttaa aaataaaatt ttgtccaaaa atactaagtc caagttcaac
     1921 tatggtagaa cttataaaaa aaatcaaaag caaaacaata aaataaaaaa taggaatgtt
     1981 ttgtgcattt ttaagcaaat aatcattgat aaaaacaaga gttaaaactc caacagcgct
     2041 tgtaataaaa gaaaaaagca aaaaagaaat caactttaat ttattttgct taagtaattc
     2101 ca
//
LOCUS       DARGEY010000160         2078 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.160, whole genome shotgun sequence.
ACCESSION   DARGEY010000160 DARGEY010000000
VERSION     DARGEY010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2078)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2078)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2078
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.160"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1061)
                     /locus_tag="SF008_001677"
     CDS             complement(<1..1061)
                     /locus_tag="SF008_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8233908.1"
                     /translation="MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAG
                     SGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQE
                     KMKFSIDKEAKDFLLKSADARAMLNLLEFVLVLNEKHISLENLKKLRNTINSEGVSSK
                     DTHYILASAMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDIGNADPNA
                     LNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEI
                     PNYLNNNHQEKQNYLYPHD"
     gene            complement(1061..>2078)
                     /locus_tag="SF008_001678"
     CDS             complement(1061..>2078)
                     /locus_tag="SF008_001678"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233909.1"
                     /translation="NPDYTITDIYFKKGFLTSKGSFTLNHSHTQLSTKIDLKFNNYFL
                     LNKIIKGNFTNPFDFLDKVLKNNKLGTFTLKLHDNNSKIFLNIKDINLSNEGGDTIIN
                     GGYIEALMNKNLEIKNIKIHFDMINFSQFYTKFVLQNLNYEQFFNNPVQFYELNLFSK
                     SQQQINFDYLVLDNNKINSFYSKNLVNFNEENSTINLNIQGKSNEIDIDLKSLLGQNL
                     NFDKTKFNITINKFLNSNFNISHFIQKNLDLEIQNLILEKNKQNISLQGNLNINNSYQ
                     AKLQVISSDEPDEIFPWTKDYGGLNQYFLKENNNFFLNLSYDSLANPQLKINGSEFSN
                     MDLN"
BASE COUNT          711 a          273 c          280 g          814 t
ORIGIN      
        1 aaatcatgtg gataaagata gttttgtttt tcttgatgat tgttgttaag ataattaggt
       61 atttctaaag cttcattatt ttttacatag tttaaagctt cattgatagc tttgtagctt
      121 gcattagatt tgattgtgct tgctaaataa actacgcatt gggctaggat aattcttgct
      181 tcaggataac ctatattttt aacagcctct agagtcgaaa ccgctaaatt taaagcattt
      241 ggatcggcat ttccgatatc ttcacttgaa aaaatcacca aacgcctagc gataaaatcc
      301 gcactttctc ctgcatcaat aagtcttgca agataataaa tagctgcatc aacgtcactt
      361 ccgcgtaaac tttttatcat tgcacttgct aaaatataat gtgtatcttt tgagctaaca
      421 ccttcactat ttatggtgtt gcgaagtttt ttaagatttt caagactgat atgtttttca
      481 tttaaaacca agacaaattc aagcaaattt agcatagctc ttgcatcagc acttttcagt
      541 agaaaatctt tagcttcttt atcaatacta aatttcattt tttcttgtac acgcaagagt
      601 aaagtttcaa gttcctttac ccctaaagat ttaaattcaa aaagcatgga acgacttctt
      661 ataccagaac ttagaacaaa atagggattt tcagtgcttg cgccgattaa aattaaacgg
      721 taattttcca taggaattaa aagcatttct tgttgggttt tgctaaggcg gtgaatttca
      781 tcaataaaaa ttaaaggctt ataaagacta tttttataat tatctaaaat ttttcttagt
      841 tcttcgagtt taaaatttcc tccatcaaat tcataaaaat ctaagccaaa ttctttggct
      901 acaactctag caaaagttgt ttttccagaa cctgccgttc caaaaaaaat actatgagga
      961 agtttttgta aagcagtaaa ttttttgaaa atttctataa gctcatattg tcctaaaata
     1021 tcatcaaaat tttcagggcg aaaggtcaaa gctaggctca ttaatttaaa tccatatttg
     1081 aaaattcact accattaatt tttagttgag gattggctaa gctatcataa gataaattta
     1141 gaaaaaagtt attattttct tttaaaaaat attgatttaa acctccataa tcttttgtcc
     1201 aaggaaaaat ttcatcaggc tcatctgaac tgataacttg taattttgct tgataagagt
     1261 tgttaatatt taaattgcct tgtagactga tattttgttt atttttttca agaattaaat
     1321 tttgtatttc tagatcaaga tttttttgaa taaaatgaga gatattgaaa tttgagttaa
     1381 gaaatttatt tatggttata ttaaattttg ttttgtcaaa atttaaattc tgacccaata
     1441 aagatttaag atcaatatca atttcattgg attttccttg tatgtttaag tttattgttg
     1501 aattttcttc attaaaattt actagatttt tgctataaaa agaattgatt ttattgttat
     1561 ctaacacaag ataatcaaag ttgatttgtt gttggctttt gctaaataaa tttaattcat
     1621 aaaattgtac aggattgtta aaaaattgtt cgtaatttaa attttgcaac acaaatttag
     1681 tataaaattg agaaaaatta atcatatcaa aatgtatttt aatgttttta atttctaaat
     1741 ttttattcat taaagcttca atatatccgc cgtttatgat ggtatctcca ccttcattgc
     1801 ttaaatttat atctttaata tttagaaata ttttagagtt gttatcgtgt aatttgagag
     1861 taaaagttcc taatttattg ttttttaaca ctttatctaa aaaatcaaaa ggatttgtaa
     1921 aatttccttt tataatttta tttaacaaaa aataattatt aaatttaagg tcgattttgg
     1981 ttgaaagctg tgtatgagag tgatttaaag taaaacttcc cttagaagtt aaaaaacctt
     2041 ttttgaagta aatatctgta attgtataat caggattg
//
LOCUS       DARGEY010000161         1988 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.161, whole genome shotgun sequence.
ACCESSION   DARGEY010000161 DARGEY010000000
VERSION     DARGEY010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1988)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1988)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1988
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.161"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            27..1058
                     /locus_tag="SF008_001679"
     CDS             27..1058
                     /locus_tag="SF008_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HEG8233910.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLCADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGDSLPLNTKIKCAEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYDLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
     gene            complement(1300..1503)
                     /locus_tag="SF008_001680"
     CDS             complement(1300..1503)
                     /locus_tag="SF008_001680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233911.1"
                     /translation="MGEVSFEEVKEEKDDENTVYLYTCECVEQMHDVPFGIHQKIQLK
                     GVKFKCKKCKEAIQFYKKYSENF"
     gene            complement(1484..1651)
                     /locus_tag="SF008_001681"
     CDS             complement(1484..1651)
                     /locus_tag="SF008_001681"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233912.1"
                     /translation="MSYLIQNIKTTNDLKEKLYTVSKKWLLEHILYKDVKVEQYRRSS
                     LTSEDDGGSKL"
     gene            complement(1627..1922)
                     /locus_tag="SF008_001682"
                     /pseudo
     CDS             complement(1627..1922)
                     /locus_tag="SF008_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871941.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
BASE COUNT          641 a          247 c          347 g          753 t
ORIGIN      
        1 ttatatctta gataaggagt aaaataatga aaaaaaatat tgtttttttc gaagttaaag
       61 gtgggagtga taaaggtgaa gatggctata gaaaagatac catgcctatg gtaaatgcct
      121 taaaagctaa gggttggaat gctgaggtga ttttttttga agtgggtaaa aaagatgaaa
      181 tttacaaata tgtgaaagaa aattttgatg gttatgtttc tcgcatcaat cctggcaatc
      241 ttaaagaaga aaatgagtat tttgatatgt taagaaaact ttgtgccgat aagcttgtag
      301 gcatgcctca tcctgatgct atgataggtt atggtgctaa agatgcactt acaaaattag
      361 cagatactga tcttgttcca agcgatactt atgcttacta tgatattaag acttttaaag
      421 aaaattttcc aaaaagtttg gctaaaggtg aaagggtttt aaaacaaaat cgtggctcta
      481 caggagaggg aatttggcgt gtgagtgtag agggtaatgt tagtggagat agtttgcctt
      541 taaacacaaa aatcaaatgt gctgaagcta aggataatca tgtagaacat agagagcttg
      601 gggaatttat ggatttttgc gagcaatata tcataggtga taatggtatg cttgtggata
      661 tgactttttt accgcgcatt aaagaaggtg aaatcagact tttaatgctt tataacaccc
      721 ctgtaaatgt agtgcataaa aaaccagccg aagatgctga tgctttttct gctacgcttt
      781 ttagtggggc aaaatatcgc tatgataagc cagaagattg gaaaactttg gtggatatgt
      841 ttttaggcga gcttcctaag gtaagggaaa aattaggcaa ttacgactta ccattgattt
      901 ggacggctga ttttatttta gatactgatg aaaagggcaa tgataaatat gttttaggcg
      961 agattaattg ttcttgtgta ggttttactt ctcatttaga acttgctgat gaagtagctt
     1021 caaatattat taatattgta agtaaaacta aggcttagtc tttaagctta atgtccattt
     1081 tattattgca aaatggacat tctttttcta ttgtttttaa gtttgagcta tattctatcg
     1141 agaaaaaatt ttcacaaaat gagcattttg tatctttggt tagcatagga taggaatagt
     1201 caaatttatc caaaataaaa tattttattt ttttatcctt aaatttcctt ctttgtctaa
     1261 cttatacttt atttattatt ttaacgcata aatagttaat tagaaatttt ctgaatattt
     1321 tttataaaac tgtatggctt ctttgcattt tttacattta aattttacgc ccttaagttg
     1381 aattttttga tgaattccaa atggtacatc atgcatttgt tctacgcatt cgcatgtata
     1441 aagataaact gtattttcat catctttttc ttctttgact tcttcaaagc ttacttcccc
     1501 catcatcttc agaagttaaa gaagatcttc tgtattgttc aactttcaca tctttataga
     1561 gtatatgttc taaaagccat tttttagaaa ctgtgtaaag cttctctttt aaatcattag
     1621 tggtttttat gttttgtata agataagaca tatcacgaat gatattttat gcatgatttt
     1681 gtgttcattt aaataaggat aatgaatttc ttgcatataa tcttcttcat tactaaaatg
     1741 ttctttcata tagttaaaaa gttctgttaa aatttctttg agttcttctc gttttacaaa
     1801 tttataaaca gcactttcaa ccttgcttgc aagttcacaa agtttttggt gttgaatgtc
     1861 aatcattgtg tcatgaatac tgtattttca ttccaagttg gaattagttt atctaaaagc
     1921 accttcttta atttttgtat ttaaaaatta atttaatata tttgagtgaa atattacata
     1981 atatttta
//
LOCUS       DARGEY010000162         1960 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.162, whole genome shotgun sequence.
ACCESSION   DARGEY010000162 DARGEY010000000
VERSION     DARGEY010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1960
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.162"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..223
                     /locus_tag="SF008_001683"
     CDS             <1..223
                     /locus_tag="SF008_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8233913.1"
                     /translation="DENLCFVGEVKFKNKKICKNILNLLKSKAKSLNLAPNYYIIISK
                     NGFSKEIDKICEQNLLLLDLNDFKILLEE"
     gene            227..1246
                     /gene="flgS"
                     /locus_tag="SF008_001684"
     CDS             227..1246
                     /gene="flgS"
                     /locus_tag="SF008_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HEG8233914.1"
                     /translation="MNESILKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLSIISLDKIRDELEFEGRFY
                     AVKIIAHNEKTIVSATDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFAR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNF
                     TSQIDFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASCDNEKI
                     CIRVYDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYF
                     TLPLV"
     gene            1365..>1960
                     /locus_tag="SF008_001685"
     CDS             1365..>1960
                     /locus_tag="SF008_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233915.1"
                     /translation="MITQIIILYFHKQKLIKNSKISFANTFLKQNASKLNEIQSANSQ
                     TLVRSEVLNSTNISNTSNNTNFSISSKTSSPNYDISSEFKNSIYTLKYKQADISNTST
                     NTAYGYSVDKDGYMGSDFNKAAGLPEDFKIHKSTLDEIKKAAENEPYIADMKQYFGVS
                     EYYTNIDMAETIKQYYNQFNQIVNHTFNDTNKTSFTET"
BASE COUNT          770 a          237 c          309 g          644 t
ORIGIN      
        1 agatgaaaat ttgtgttttg tcggagaagt taaatttaaa aataaaaaaa tttgtaaaaa
       61 tattttaaat cttttaaaat caaaagcaaa gtctttaaat ttggctccaa attattacat
      121 tataatctca aaaaatggtt ttagcaagga aattgataaa atatgcgaac agaatttgct
      181 tttacttgat ttgaatgatt ttaagatttt attagaggaa tgataaatga atgaaagtat
      241 tttaaaaagt ttagactcaa atgaaaaaga aaccctacaa aaaggcttag aaagtcttat
      301 agaacaaact tatgtaatag aaaatgaata caaaacttta aatgaaaact ataactcctt
      361 acgcgcaatg gttgatgaga ttatagaggt gttgcctagt gcgctttgga ttttagataa
      421 agaaaaaaat attattttac aaaatcaaga agccttgaaa aatccaaaat tacttagtat
      481 cattagtctt gataaaattc gtgatgagct tgaatttgaa ggtaggtttt atgcggtaaa
      541 aatcatagca cataatgaaa aaactatagt ttcagctaca gatattagcg atgaaaaacg
      601 caatgaaagg cttgcaagca tgggtagtgt agcggctcat ttggcacatg agataagaaa
      661 tcctattgga tctatatctt tgcttgcttc aactcttttt gctcgtagtg agcttaaaaa
      721 taagcatata gttcttgaaa tccaaaaggc tattgctaga gtagagcgta tcgtaaattc
      781 aactttactt tttactaagg gtgtgcacat caatgcttta aattttaatc ttttagagtt
      841 aaaagaagag tgtgaaagtg ccattaactc ttataatttc acttctcaaa tagactttga
      901 aatatctttt ttggataagc agatttgtgc tgataaagct cttcttggtt tggttttgca
      961 aaatttgatt tataatgcta ttgatgcgat agaagaaagc gaatgtgaaa agcctatgat
     1021 taaaatttta gcaagttgtg ataatgaaaa aatatgcatc agagtgtatg ataatggttg
     1081 tgaaataaaa gatgagaaat tggtttttga agcttttaaa acaacaaaac ttaaaggcaa
     1141 tgggcttggc ttgtctcttt ctaaagaaat cataaacgcc cataagggag agttaagttt
     1201 tcaaagcgat cctaagaatt tttattttac cttacctttg gtgtgataaa tattttcttt
     1261 tcaccccaaa acgaaacaga ttttgcttat attattttaa tatatttaga ttgaaggcaa
     1321 aaaaatctaa atcaaaggaa ttaatatgag tatctttagc atcaatgata actcaaatta
     1381 taattctata ctttcacaag caaaagctaa taaagaattc taaaataagt tttgctaata
     1441 cttttttaaa acaaaatgct agtaaattaa atgaaattca aagtgcaaat tcacaaaccc
     1501 tggtaagaag tgaagtatta aattctacta atatatcaaa tactagcaat aatactaatt
     1561 ttagtataag tagtaaaaca agttctccca actatgatat atcaagtgaa tttaaaaact
     1621 ctatttatac tctaaaatat aaacaagcag atataagtaa tacttctact aatacagctt
     1681 atggttatag tgtagataaa gatggctata tgggaagtga ttttaacaaa gccgcaggat
     1741 tgcctgaaga ttttaagata cataaatcta ctttggatga gattaaaaaa gctgctgaaa
     1801 atgaacctta tattgcagat atgaaacaat attttggtgt aagcgagtat tatactaata
     1861 tcgatatggc tgaaaccata aaacaatatt ataatcaatt taatcaaatt gttaatcata
     1921 cttttaatga taccaataaa acaagtttca ctgaaacaga
//
LOCUS       DARGEY010000163         1937 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.163, whole genome shotgun sequence.
ACCESSION   DARGEY010000163 DARGEY010000000
VERSION     DARGEY010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1937)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1937)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1937
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.163"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(65..631)
                     /locus_tag="SF008_001686"
     CDS             complement(65..631)
                     /locus_tag="SF008_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233916.1"
                     /translation="MKYYKMMYNYNHNDVDNWYSCDLVDIKNNDEYALLESKPITNWQ
                     TPSFEIDKDDGNILTDLIHNDCGWRIVSPKFINLMQDLIKDCVQYLDVEIKSQEINYY
                     GCKIMHVTKSLEALDYEHSVYTYMGDNDEYLSITKAVLKKSKLDGSHIFRIKDDEVPV
                     FVSSEFRKIVRENNLLGFSFSEVMVYEN"
     gene            complement(631..981)
                     /locus_tag="SF008_001687"
     CDS             complement(631..981)
                     /locus_tag="SF008_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AHH domain-containing protein"
                     /protein_id="HEG8233917.1"
                     /translation="MEYDRIRWEGMGDDNKQSSIQTHHIATDKNKKFTKEFRKITKKY
                     NMELDEDWNKVKMPHRGRHPNEYHEYILEKMSKIDKIARGDKDKFIKEFEKLKEEVKN
                     NPAILHKDYYKERK"
     gene            complement(1400..>1937)
                     /locus_tag="SF008_001688"
     CDS             complement(1400..>1937)
                     /locus_tag="SF008_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233918.1"
                     /translation="FMDFSYFFVGYDHTLDSKNNTLKSYPINQDKLIHKRSFKEYIEE
                     YTNTYFLNYYSKEFLNELDNQELNKDRLNYYLINYNKIPKNTEEENIQGILSKQKDID
                     INFVNFIDYKDYVYKNKDDFWEFSAKENSILWEKFLSKNTLKPFPLNFDCSLEEKLLY
                     AKDEQLENILKTHKTFHG"
BASE COUNT          621 a          282 c          215 g          819 t
ORIGIN      
        1 aatgaaatta taactaaaaa tctttttata ttaaattgca aaatttttta tagcttttag
       61 tctttcaatt ttcatatacc ataacttcac taaaactaaa acctaataaa ttgttttctc
      121 ttactatttt tctaaattca cttgatacaa aaacaggtac ttcatcatct ttaattctaa
      181 atatatggct tccatcaagt tttgattttt ttaaaacagc tttagtaata cttaaatatt
      241 catcattatc acccatataa gtatatacag aatgttcata atctaaagcc tcaagtgatt
      301 ttgttacatg cataatttta caaccataat aatttatttc ctgactttta atttctacat
      361 ctaaatattg cacacaatct ttgattaaat cttgcattaa atttataaat ttaggagaga
      421 ctatacgcca accacagtca ttgtgtataa gatcagtcag tatattacca tcatctttgt
      481 cgatttcaaa actaggtgtt tgccaatttg tgataggttt ggattctaaa agtgcatatt
      541 catcgttatt ttttatatct acaagatcac aagagtacca attatccaca tcgttatgat
      601 tatagttata catcatttta taatatttca ttattttctc tccttatagt aatctttatg
      661 aagtatagca ggattgtttt tgacttcttc ttttagtttt tcaaattctt ttatgaattt
      721 atccttatct cctcttgcta ttttatcaat tttactcatt ttttcaagaa tatattcatg
      781 atattcatta ggatgtcttc cgcgatgtgg cattttaact ttattccagt cttcatccaa
      841 ttccatgtta tatttttttg ttatttttcg aaattcttta gtaaattttt tattcttatc
      901 agtggcaata tgatgggttt gaattgatga ttgtttgtta tcatctccca tcccttccca
      961 tcttatccta tcatactcaa tcttagcaag aggactagct tgtattttag ctaaagcaaa
     1021 tttaatctta ttctttttgg gtatagcaaa tataggataa ccttttatac tcattcctat
     1081 caaacccatt tgtaatacag aatgtttatt attaacttta tgatctgaat aagtataagc
     1141 aaataccata gctactttag tacaaggtcc tcctagtata ggtggattta aacatccact
     1201 tatactagct ccttgtattt cattatcaag cataatagga acattgtctg attttattct
     1261 tttagctttt tttgctttta acttaactct acctccatgt aagcatacta aagtattatc
     1321 ttctaagata ggatgcatac aagaagtatc aggacttata ttaatatctt ctattctagg
     1381 aataaggatt gttctttttt tagccatgaa aagtcttgtg ggttttaagt atgttttcta
     1441 gttgttcatc tttagcataa agaagctttt cttctaaaga gcaatcaaaa tttaaaggaa
     1501 aaggttttag ggtattttta cttagaaatt tttcccaaag tatagaattt tcttttgctg
     1561 aaaactccca aaaatcatct ttatttttat aaacatagtc tttataatct ataaaattta
     1621 caaaattgat atctatatct ttttgtttag aaagtatgcc ttgtatgttt tcttcttctg
     1681 tgttttttgg aattttgttg taattaataa gataataatt aagtctatct ttgtttaatt
     1741 cttgattgtc aagttcattt aaaaactctt tagaataata atttaaaaag taagtatttg
     1801 tgtattcttc tatatattct ttaaaacttc ttttatgaat taatttatct tgattaatgg
     1861 gataagattt taaagtatta tttttagaat ctaaagtatg atcatatcct acaaaaaaat
     1921 aagaaaaatc cataaaa
//
LOCUS       DARGEY010000164         1902 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.164, whole genome shotgun sequence.
ACCESSION   DARGEY010000164 DARGEY010000000
VERSION     DARGEY010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1902)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1902)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1902
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.164"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1056
                     /gene="ispG"
                     /locus_tag="SF008_001689"
                     /gene_synonym="gcpE"
     CDS             <1..1056
                     /gene="ispG"
                     /locus_tag="SF008_001689"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HEG8233919.1"
                     /translation="KTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQINRLYFA
                     GANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRINPGNIG
                     SKENIKEVVKACKKRGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIKLLEDLD
                     FFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIALGNLLLK
                     GIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLSAIKIVE
                     EKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLKESELVD
                     RFLAEVEDEVKSRAVKE"
     gene            complement(1086..1784)
                     /gene="flgH"
                     /locus_tag="SF008_001690"
     CDS             complement(1086..1784)
                     /gene="flgH"
                     /locus_tag="SF008_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HEG8233920.1"
                     /translation="MKKVLFYVLPFVFFGCSATVDPQISMKPPAYVEELAPKQSNNIE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
BASE COUNT          614 a          287 c          367 g          634 t
ORIGIN      
        1 aaaaccagac aaatcaaagt aggaaatgtt ttaataggcg gtgatgcacc catttcagtt
       61 caatctatgc tttttactaa aacaagagat atagaaggtt ctttagaaca aatcaatcgt
      121 ctttattttg caggagcaaa tatagtgcgt ttggcgtgct tggatatggc tgatgcaagg
      181 gctttaaaag agattaaagc taaaagtcct ctacctttaa tcgtagatat tcattttaat
      241 cataatttgg ctgtatattg tgctgaattt atcgatggcg tgcgtataaa tcctggcaat
      301 ataggctcta aagaaaatat taaagaagtg gtaaaagcat gtaaaaaacg gggtatccct
      361 atacgcatcg gtgtaaatca cggctccata gaaaaacaat ttagtgataa atttggttat
      421 ggtgtcgatg ccatgctaga aagtgcgatg tataatatca agcttttaga ggatttagac
      481 ttttttgata ttaaaatttc catgaagact tcagatgctc aaaaaactat agaagcttat
      541 gagagattaa gaccgctttg tgattatcct tttcacttag gggtaactga agcaggaact
      601 aaatttcata gcactgtaaa aagttctata gctttaggaa atttacttct taaaggtata
      661 ggcgatacta tgcgtgtttc tatgacgggt gagcttgaag aagaaattcg tgtagcaagg
      721 gcgattttac aagatagcgg agtgcaaaaa agcggagtaa atatcatctc ttgtccaact
      781 tgcggtagga ttcaaagtga tttgttaagt gcgattaaaa tcgtagagga aaaaactaag
      841 catataaaag aacctttaaa tatcagtgtc atgggttgcg tggtaaatgc tttaggtgaa
      901 gctaagggcg ctgatgtggc tatagccttt gggaaaaatc aaggacttgt tataagacat
      961 ggtgaagttg tagctaaact gaaagaaagt gaacttgtag atagattttt agctgaagtt
     1021 gaagatgagg ttaaaagtag ggctgtaaaa gaataaaagc caagaagcaa ggtttaacct
     1081 tgcttttaga atggccatat cgcttctata actttgctac cccaaggttt tcttgtgctt
     1141 ctatccactt caccttctgt tttataaaga attttagcat ctgctatata tttactatct
     1201 atagtattgt cttgaccgat gtcataagga cgaataacac cgcttaattg tatgatttgc
     1261 ttctctccgt tgattaaaag ctctcttgaa ccttcgataa aataattacc atttgataaa
     1321 attttaatta cacgtgttga aattgtagta ttgaaacttt catttctgct ttgcgagcct
     1381 gttcctgtgt agttgtttga actattggtt tgaaagccta tattagaata agcattgact
     1441 ttattaagag cattagctac cactcctgaa cttcctgtta aagcacctcc gcctaaattt
     1501 gaggtattag ttctgcttgt tgctttatta gcttgtgtgc tttgagtggt actttcttgt
     1561 ataacaactg taactaaatc atttacattc atagcttttt tatctgaaaa taaaggatta
     1621 tctcctttgc caaaaagcga tcctggcgca ctttctatat tattactttg ttttggtgca
     1681 agttcttcta cataagcagg tggtttcatt gaaatttgcg gatcaaccgt tgcagaacaa
     1741 ccaaaaaaca caaacggtaa cacataaaat aaaacttttt tcattttcgt cctttaaaat
     1801 atgaattttt atttttcttt gttaaaatta gaaaaagcaa agagtgttcc acatttataa
     1861 attcaaggag aaaatgatgg caaatcttta tttgatgaga tc
//
LOCUS       DARGEY010000165         1884 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.165, whole genome shotgun sequence.
ACCESSION   DARGEY010000165 DARGEY010000000
VERSION     DARGEY010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1884)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1884)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1884
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.165"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..227
                     /locus_tag="SF008_001691"
     CDS             <1..227
                     /locus_tag="SF008_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233921.1"
                     /translation="EFNQQSGAAISNFKNQGTSTSNVVNNSAKDAIVEQDANRRMGVN
                     PSSYIIQDASKSGNELAKEAQGLFDAMSKK"
     gene            complement(495..776)
                     /locus_tag="SF008_001692"
     CDS             complement(495..776)
                     /locus_tag="SF008_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YafQ family
                     toxin"
                     /protein_id="HEG8233922.1"
                     /translation="MAKYKIYYHKDFIKAYKKISDEERKITDEVIVKLSNDENLEPKY
                     KDHQLKGVLKDFRECHIKSNLLLIYQKHNNELELNILKLGSHSKLFKKY"
     gene            complement(763..990)
                     /locus_tag="SF008_001693"
     CDS             complement(763..990)
                     /locus_tag="SF008_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233923.1"
                     /translation="MTLIIENVNENFLPAFKGLAKSINAKCKISKPKLSSFESKILNA
                     SKELDKEKKVNTALSFNSHQDFVKAYQNGKI"
     gene            1263..1403
                     /locus_tag="SF008_001694"
     CDS             1263..1403
                     /locus_tag="SF008_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233924.1"
                     /translation="MKTTEYNTQQKNNKEYLAEREAVKKNYGKNGKRVRKTCYKCGVS
                     KT"
     gene            1410..1698
                     /locus_tag="SF008_001695"
                     /pseudo
     CDS             1410..1698
                     /locus_tag="SF008_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887129.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system death-on-curing
                     family toxin"
BASE COUNT          693 a          245 c          270 g          676 t
ORIGIN      
        1 atgaatttaa ccaacaaagt ggggctgcta taagtaattt caaaaatcaa ggaacaagta
       61 cttctaatgt ggtcaataat agtgctaaag atgccatagt agaacaagat gctaacagga
      121 gaatgggagt aaatcctagc tcttatataa tacaagatgc aagtaaatca ggtaatgagc
      181 ttgcaaaaga agctcaaggt ttatttgatg ctatgagcaa aaaataagtc tagcttttta
      241 gttaggctta gtgatctcgt atagcaccga atatataatc aaatttacga ggatcgcttt
      301 ctatatatcc cccaatttca cttgttcccc catgcttttt ctcatcatag ggaactattt
      361 ttatattttt agcaaggaat aacacaaaag caaaacaata gctgcaactc cgcaagaaag
      421 ccaaagaaca agtatgagtt tttcggttgt agtcactttt gcttttttcc tacatttatc
      481 catctttatt cctttcaata ttttttaaat aacttactat gactacctag ttttaaaata
      541 tttagctcta actcattatt atgtttttga taaattaata acaagttaga ctttatatga
      601 cattctctaa aatcttttaa tacacctttt aattgatgat ctttatattt aggttctaaa
      661 ttctcatcat tagaaagttt tacaataact tcatcagtta ttttacgctc ttcatcgctt
      721 atttttttgt aagcttttat aaaatcttta tggtaataaa ttttatattt tgccattttg
      781 ataagctttc acaaagtctt gatgcgaatt aaagcttaat gcagtattga cttttttttc
      841 tttatcaagt tctttgcttg catttaatat cttactttca aaactactca acttaggctt
      901 agaaatttta catttggcat ttatgctttt tgctaaaccc ttgaatgcag gtaaaaaatt
      961 ttcattaaca ttttcaataa taagagtcat aagcaactcc tttctcaatt tatataacat
     1021 aattatacca ttttttaata atttttgcaa gtatttttgt tacagaatgc ctatttttta
     1081 ggggtttgaa acggattttt tttgacttga ttgttttatt tattgcttaa tgaaaattaa
     1141 tttgggtata attagcaaat taattttttt agcttcatat tgatttgcta atcaaatata
     1201 aatgttaaaa tagtctatac agtatttagg atattaattg aaagaataaa gagggtagta
     1261 aaatgaaaac cacagaatat aatacgcaac aaaaaaataa taaagaatat ttagctgaga
     1321 gagaagcagt taaaaaaaac tatggcaaaa atggaaaaag agttagaaaa acctgctata
     1381 aatgcggtgt ttcaaagact taaaaataaa tgaaatatat agaactaagc gaagctattg
     1441 ctatacacga aaagattatt gaaaaaacag gcggattaag tggttataat gaaacacaaa
     1501 gtaggatatt tggctagtgc attagagtat ataaaaaacg atgattatta tcctacaata
     1561 actgataaaa ttacacattt aatattttcc tgtgtaaaat ttcatccatt tgctgatgga
     1621 aataaacgga cttcgatatt tctaggtatg cactttttag atttagataa gattttacca
     1681 aagaatatga attcataggt agtcctactt tagatgatat agtaaaacac aaacaaagtg
     1741 atgaagtttt taaagtgttt tataaaaaag atgataaaat aagattgctt agagttagta
     1801 atatgcaagc tttaaatcgt tttgataaac ttaaaggtgc aatgacaaaa ataattttag
     1861 atagtggttt taaacctgat aaat
//
LOCUS       DARGEY010000166         1857 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.166, whole genome shotgun sequence.
ACCESSION   DARGEY010000166 DARGEY010000000
VERSION     DARGEY010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1857)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1857)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1857
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.166"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            5..937
                     /gene="rsmH"
                     /locus_tag="SF008_001696"
     CDS             5..937
                     /gene="rsmH"
                     /locus_tag="SF008_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEG8233925.1"
                     /translation="MEIPHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHP
                     DLKFIACDQDQQALEFSKKRLKDFRNRITFMQSNFSEVLEKISLKEELRGILADIGVS
                     SFQLDNNERGFSVNSDFLDMRMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFI
                     AEKICLERSKNPIKSAKELYQIIGKGKQNHRKISKATLAFQAIRIEVNQELKVLKDFL
                     GHLENLKPKNCILAIISFHSLEDRIVKKFFKKWSKNCICDEKIMRCECGNNHSLGQII
                     TKKAISASKEELLKNSRSSCAKMRAFYFNNLDNK"
     gene            937..>1857
                     /locus_tag="SF008_001697"
     CDS             937..>1857
                     /locus_tag="SF008_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233926.1"
                     /translation="MLEDDFIKERQNIRQKMLKFSRAINQGKPLDDDLRDEISSDDIL
                     RRRFKKKTPNKFLEELDEEYESKHAKKSNIYLKEDLINVKLEEKQSLAKKIFSKMKER
                     RKEENKKTKKNFLFSRKKANEIKNIQTKTQIQTKSNQATTQTKQEKKELTNSIEKIQK
                     TETKIQKPLIIEKKLDVKNQPNIKKSLENLQKKITPQENKQELPKPSNQAQKKQQNDE
                     DAQKAKNILLEGFSNATKEDRNLNFNHLLFAALLVSFALFLFAPQIYIRNQIYYLSRE
                     IATLRTEESVLNEENKDLKRRLENMRFQNQI"
BASE COUNT          824 a          249 c          256 g          528 t
ORIGIN      
        1 gattttggaa attcctcata tcccagtttt gcttaatgaa gttcaagaga tttttaaaaa
       61 tcttaaaaca ggttattttt tagactgcac tttaggattt ggcggacata gtgaagcttt
      121 gcttaaaaat catcctgatc ttaaattcat tgcttgtgat caagatcaac aagctttaga
      181 attttctaaa aaacgtctta aagattttcg caataggata acttttatgc aaagtaattt
      241 tagtgaagtt ttagaaaaaa tttcactaaa agaagaatta agaggtattt tagcagacat
      301 tggagtttct tcatttcagc ttgataataa cgaaagaggt tttagtgtaa attctgactt
      361 tttggatatg agaatgaatc aaaactccaa aatatcggct tatgagatta ttaatactta
      421 tacaaaagag caattaactt ccatttttaa agattatgga gaattacatg atgcacattt
      481 tattgctgaa aaaatttgcc tagaaagaag taaaaatcca atcaaaagtg ccaaagagct
      541 ttatcaaatc ataggaaaag gtaaacaaaa tcatagaaaa atttccaaag ctactttagc
      601 atttcaagcc attagaatag aagtaaatca agaacttaaa gtgcttaaag attttcttgg
      661 gcatttagaa aatttaaaac caaaaaattg cattttagca atcattagtt ttcattcttt
      721 agaagataga atagtaaaaa aatttttcaa aaaatggtca aaaaactgca tttgtgatga
      781 aaaaataatg cgttgcgaat gtggaaataa ccatagccta gggcaaataa taaccaaaaa
      841 agctataagt gcaagcaagg aagaactttt aaaaaattct cgctctagtt gtgctaaaat
      901 gcgggctttt tattttaata atttggacaa taaataatgc tagaagatga ttttataaaa
      961 gaacgccaaa acatacgcca aaaaatgctg aaattttctc gcgccataaa tcaaggcaaa
     1021 ccgcttgatg atgatttaag agatgaaatt tctagcgatg atattttaag acgtcgtttt
     1081 aaaaaaaaga ctcctaataa attcttagaa gaacttgatg aagagtatga gtcaaaacat
     1141 gctaaaaaat caaatatata tttaaaagaa gatctaatca atgttaaatt agaagaaaag
     1201 caatctcttg ctaaaaaaat tttttccaaa atgaaagaaa gaagaaaaga agaaaataaa
     1261 aaaactaaaa aaaatttttt atttagcaga aaaaaagcaa acgaaataaa aaatatccaa
     1321 accaaaacgc aaattcaaac aaaaagcaat caagctacca ctcaaacaaa acaagaaaaa
     1381 aaggaactta caaattctat agaaaaaatt caaaaaacag aaactaaaat acaaaaacct
     1441 ctaattatag aaaaaaaact agatgttaaa aatcaaccta atatcaagaa aagtttagaa
     1501 aatttacaaa aaaaaataac accacaagaa aataaacaag aacttccaaa accatctaat
     1561 caagctcaaa aaaaacaaca aaatgatgaa gatgctcaaa aggcaaaaaa tattttacta
     1621 gaaggcttct ctaatgctac caaagaagat agaaacctaa acttcaatca tcttcttttt
     1681 gcagctttac ttgttagttt tgcattattt ttatttgccc cacaaattta tattagaaat
     1741 caaatttatt atcttagtag agagattgct acattaagaa cagaagaaag tgttttaaac
     1801 gaggaaaata aagacttaaa aagaagactt gaaaatatgc gattccaaaa tcaaatt
//
LOCUS       DARGEY010000167         1840 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.167, whole genome shotgun sequence.
ACCESSION   DARGEY010000167 DARGEY010000000
VERSION     DARGEY010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1840
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.167"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..479)
                     /locus_tag="SF008_001698"
     CDS             complement(<1..479)
                     /locus_tag="SF008_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8233927.1"
                     /translation="MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLA
                     KKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILDEVGMYDYAMLESIRIYSDSISF
                     VLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
                     "
     gene            complement(472..1806)
                     /gene="mshL"
                     /locus_tag="SF008_001699"
     CDS             complement(472..1806)
                     /gene="mshL"
                     /locus_tag="SF008_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HEG8233928.1"
                     /translation="MSINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNI
                     HQMSLDEIFNFFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDA
                     KPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIEKEIIVLLKNSHEDYEAKIPIINPNAG
                     LIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFNIGLN
                     SQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQ
                     AIISVGDTINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRIN
                     PSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNS
                     INFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE"
BASE COUNT          640 a          294 c          202 g          704 t
ORIGIN      
        1 gaaatttttt gtaaaaactt aagacattta tttgaaaaat tcattccgaa tttcaattta
       61 atataatcat caagttctaa aagactaata tttttcaatt taaaacaagc acttaaacga
      121 cttttaaaat gctctttttt aagtatattt aactttttat gagaacttaa aacaaaactt
      181 atagaatcac tataaatcct gatgctttct agcattgcat aatcatacat tcccacttca
      241 tcaagaatga ttaaactctg accttgtgaa atcaaaaact caattttttc ttttaagaaa
      301 ctctgatctt taaaattttc attaataaaa tcaacattat atttttttgc caatctttgc
      361 aacaatacac ttttaccact accacttttt ccccataaaa aaataaaagc tttttggctt
      421 tctaaaattt gattgatttg atgaaaaatt tcttctctaa atggaataat tttactcata
      481 atgcttaaat cctagatctt taagacttgg agcatttaca ctatctacta tacttggagt
      541 gataataaaa acaatttcgg ttgctttaga atttaaaact tctcctttaa acaaagaacc
      601 taggattgga atttttgata gaaaattgat agaatttttc tcattagatt tatcgtgaga
      661 aatcaatcca cctaaaatta aagtttgatt attctctact tgcacaacac tagaaagctt
      721 tttttgtatg gtatcaggag caatagttct tggttctttt tgtcgtttat tatcttctgg
      781 atacttaaaa tcacttaagc ttggattaat cctgagcatt atttttccat catcagaaat
      841 ttcaggcaag atattgagta aaatgcctac aaaaatagaa taattgttat aactttcact
      901 aacagtagtc ccattttcag tgcctttaga actttcttta acttgataat ttatagtatc
      961 acctacagaa ataatggctt gttggttatt taaagccata agctttggat tagaaagcac
     1021 gctagttttt ccattttgag aaagaaagtt aataatagaa tcaaaattta aattcgccct
     1081 taaacccaaa ttcttaacaa aaccttgccc attttgaaac tgaataaaag aattttcatt
     1141 atttacttgc gaatttaaac ctatattaaa attttgccaa ttaatcccac tagaatggtt
     1201 ttcatttaaa ctcacagcaa gtatgctaac atcgataata acttgttttt taagacgatt
     1261 ttctagtttt tgcaaataat ttttcacact ttttaactga gaatttgttc cagttactat
     1321 aataagacct gcattgggat ttataatggg aattttagcc tcataatctt catgagaatt
     1381 ttttaataat acaataatct ctttttctat attttgccaa aaatcaaatt tttccatact
     1441 tttaatcata ttgtcttctg cgtcatcaaa actaccgcta tattcacttt gccttggttt
     1501 agcgtctaca gacgctttag ttatgctttg tccttctctg atagaagtga tataacttat
     1561 cttaaaaatc ttcgtattaa tgcctgaaat tcttaaaatt ttaccatcaa aatcatagct
     1621 aagatcatgc tctttgataa aaaaattaaa aatttcgtct aaactcattt gatgaatatt
     1681 gacagagttt tgcaatattt ctaatttttc tttggcaatt ttatctttaa caataatact
     1741 aaaagaacaa tattttgcaa gctcatcaag actttcttgt atgcttaatt tttcattaat
     1801 actgatatca aaaagacgct tttgacaatc taaagcataa
//
LOCUS       DARGEY010000168         1839 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.168, whole genome shotgun sequence.
ACCESSION   DARGEY010000168 DARGEY010000000
VERSION     DARGEY010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1839)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1839)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1839
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.168"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>1839
                     /locus_tag="SF008_001700"
     CDS             <1..>1839
                     /locus_tag="SF008_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEG8233929.1"
                     /translation="QVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKPAKT
                     KTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLKASI
                     NLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSIKEI
                     ELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIYRIL
                     GKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHTGYC
                     IANNLKLSQIGLKTTGSIKTNTDENINLEITNFDISDDAIKSGIVNVQASNIKVNGNV
                     GATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKNVFV
                     ENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSDTEC
                     ENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPSAIEMKFSNLYHDI
                     IKKYNHLSISYKKLVKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPNTNT
                     NLELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIF"
BASE COUNT          817 a          244 c          226 g          552 t
ORIGIN      
        1 tcaagtaaaa accttagaaa ctttcaatcc ttttgaaagt ttaaatcatg aacaagcaaa
       61 cacagaacaa attcttgatt ttagagttat agattttaaa cttctgtgtt ctagtgtaaa
      121 accagcaaaa acaaaaactt atgaaagaaa ggattttgac ttattttatg cagatgattt
      181 ttttgtaaaa aactacaata ccatagtgca aaaatttctt atagaaattt acccaaaaac
      241 ccaaagtttt ccttttacag tcaaacttag atccaactcc aacctaaccc atctaaaagc
      301 cagtatcaac cttacagaaa attttaaata ttatcctaat ttaaaatttg atattttgca
      361 aaatatctac aaaataatga tcaaacaaaa atttttaatc ttaagacttg ataaaaattt
      421 atttgacaag attgatgatt ttatcttatc aatacaaaaa agtccatcta ttaaagaaat
      481 agagcttgaa attgccaaag gtgtagataa gattgaacat aaaagtgatg aaattattta
      541 tcatagagat gttaacgaag aatgttttga cgaaaatatt aactatgatg aaggaaacta
      601 ctgtaaacct attgaaaaaa atgagctact ttttgaatac atttatagaa ttcttggaaa
      661 agaaggacga aatttaagag gagagatact tcatttaaat ccaatagcct ttcttgataa
      721 tccttttatc ataaaagatg aaagcattta cacagaagaa ttagaagata gaattaaata
      781 ttttagtgcc aattatggat ttttaaacaa agatcataca ggatattgta tcgcaaataa
      841 tttaaaatta tcacaaatag ggcttaaaac aaccggttca atcaaaacaa ataccgatga
      901 aaatataaac ttagaaatca ctaattttga tataagtgat gatgctatta aatcaggtat
      961 tgtaaatgtt caagcttcaa atataaaagt aaatgggaat gttggagcaa caaaacttta
     1021 tggaaaaaat atcagtatca aaggcttaac tcatgcaaaa agcgaaattt ttgcacaaga
     1081 tatttttatt acaacacaca aaggaacttt gcaagctgac actgtatata taaaaaattt
     1141 agaaaatggg acaattatag ctaaaaatgt atttgttgaa aactgcatgg gtggaaaaat
     1201 agaagcagaa aatatttata tttgcaattt actaacggat aatactttat atccaagaaa
     1261 aaatctaatc ataacaaaca atataaaatt taaaaacaat atcgtagttt caccactagt
     1321 ttctattgaa aacaactcag atacagaatg cgaaaatctt aaaaatctaa gccttaaaat
     1381 aaaaagtaag cttgatgaca ccataagcaa aatgcaaaat tactatgatt atctaatcaa
     1441 aaatcaaatc aaaatcatca aacttcaaaa gactaaaaat cctagcgcca tagaaatgaa
     1501 attttcaaat ctttatcacg atatcataaa aaaatacaat catcttagca tttcgtataa
     1561 aaaacttgta aaattaaaat atcaaattga tgcaaaatta aatttcttaa atgaaatggt
     1621 ttacaatgta aaaatataca taaaagccga aaatatcgga gaggataatt ttttaaaatt
     1681 ttatcctaac acaaacacca accttgaact aaaacatcat ataaatttaa aagactatga
     1741 aaaggtttta tatcttgaaa aaggacagca agtaagttat attaaatcaa gccataatta
     1801 tagcgaaagc gacatagaag aaattaaaat tatttttga
//
LOCUS       DARGEY010000169         1808 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.169, whole genome shotgun sequence.
ACCESSION   DARGEY010000169 DARGEY010000000
VERSION     DARGEY010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1808)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1808)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.169"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            167..1699
                     /locus_tag="SF008_001701"
     CDS             167..1699
                     /locus_tag="SF008_001701"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233930.1"
                     /translation="MDEELFWENIVPVGHINEETLKSQIYINNINFSTLQYDETVLPT
                     ELECCYNEFKYYQKSNNEIATLGWAISYQLQVLWQNSPKIDTIQNYHLPVKQNKPNNP
                     QAEQRLKEIQNFLQSKGIEPLILHYTPYPNNTQTQEMKRLRQNSERFSRHVDNKTNEV
                     REERRSIKFYTTLDWDKFYSHFPIIKRLSKKFHTKEDIYTQNFTKQIEIILQKTHNIL
                     ILKNLPQGEYKFDFAIDIKENRSDKNEESYFIIKENDEILKDYKRILDCKPYELDTLN
                     CQYIGVGDDEFFRQIWQNLGINIAEKFKVDFSYARLDKFIFATSPFGLTYNTYETLEQ
                     TYDELMQDLSLYACSGKFSFNFVPSKLSIKKEIQGDREKVLYRVDEMLVYVYDSFDFL
                     DQGHEFDDKGNFIKLGQPVGAWDFNEKSFSIEGSLYQMGTYREWLEWEIDGYKIDCSI
                     SPQRILQSPKTKQYYLYNQDYQDYQKFTPYGLDFRLYSKDFITKLDFKDKAYNVLYNT
                     GV"
BASE COUNT          718 a          227 c          280 g          583 t
ORIGIN      
        1 taatgaattc aaatgcaaat cataaaggat aaaataatat atgaaaacaa gccaaatata
       61 tgaaacttta taaatatgct agaatgtgct ggactaggta ttctataaat ttaaatgaga
      121 acatgcttaa ggaatttcta aaatataaaa acaataggat gaaataatgg atgaagaact
      181 tttttgggaa aacattgttc cagtaggaca tattaatgaa gaaactttaa agagccaaat
      241 ttatattaat aatataaatt ttagcacttt acaatatgat gaaacagttt tacctacaga
      301 attagagtgt tgttataatg aatttaaata ctatcaaaaa agcaataatg aaatagcaac
      361 actaggttgg gctattagct atcaacttca agtattgtgg caaaatagcc ctaagataga
      421 tacaatacaa aattatcatc tccccgtaaa acaaaataag cctaataatc cccaagcaga
      481 acaaagacta aaagaaatac aaaatttctt acaaagtaaa ggtatagaac ctcttatttt
      541 acattacacc ccttatccaa acaacacaca aacccaagag atgaaaagac taaggcaaaa
      601 ttcagagcgt ttttcgcgcc atgtagataa taaaacaaat gaagtaagag aagaaaggcg
      661 ttctattaaa ttttacacta cgctagattg ggataagttt tattctcatt ttcctataat
      721 aaaaagacta agtaaaaaat ttcatacaaa agaagacata tacactcaaa attttacaaa
      781 gcaaatagaa ataatcttac aaaaaactca taatattttg atattaaaaa atttacctca
      841 aggagaatat aaatttgatt ttgcgatcga tataaaagaa aatcgaagcg ataaaaatga
      901 agaatcttat ttcatcatta aagaaaatga tgaaatttta aaagattata aacgcatttt
      961 agactgtaag ccctatgagc ttgatacttt aaattgtcaa tatataggtg tgggtgatga
     1021 tgagtttttc agacaaattt ggcaaaattt aggtataaat attgcagaga aatttaaggt
     1081 agatttttct tatgctagac ttgataaatt tatttttgcg acatcgccat ttggacttac
     1141 ttataataca tatgagactt tagagcaaac ttatgatgaa ctcatgcaag atctatctct
     1201 ttatgcttgt agtggtaaat tttcttttaa ttttgttcct tcaaaattaa gcattaaaaa
     1261 agaaattcaa ggagatagag aaaaagtgct ataccgcgtt gatgaaatgc ttgtttatgt
     1321 ttatgatagc tttgattttt tagatcaagg acatgaattt gatgataagg gaaattttat
     1381 caagctagga caacctgttg gagcttggga ttttaatgaa aagagtttta gcatagaagg
     1441 ttctttatat caaatgggga cttatagaga atggcttgaa tgggaaatag atggatataa
     1501 aattgattgt tcaataagcc ctcaaagaat tctgcaatct ccaaaaacca aacaatacta
     1561 tctttacaat caagattatc aagactatca aaaattcact ccttatggtt tggattttag
     1621 actttatagt aaagatttta tcactaagct tgattttaaa gataaagctt ataatgtgct
     1681 ttataataca ggagtttaaa tgggagaaga tattacattt tctatttttt ggggtttggt
     1741 aggatttatt tttaggcttg ttactattga tacaatactt tatattacag ccttaagcgt
     1801 tcttattg
//
LOCUS       DARGEY010000170         1763 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.170, whole genome shotgun sequence.
ACCESSION   DARGEY010000170 DARGEY010000000
VERSION     DARGEY010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1763)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1763)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1763
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.170"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            74..1390
                     /locus_tag="SF008_001702"
     CDS             74..1390
                     /locus_tag="SF008_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEG8233931.1"
                     /translation="MAKKQLSLTRLSFPIFWDLLSKYLTVIINTAMVSHYSNFLVGAM
                     GAGNQILDLFITIFSFLSVGCSVVIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVL
                     ILWHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMFI
                     GFLMDIVVICGNYYVLHYTKSELFGIGLSNIFARIVAIVALFAILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQATSIANEIIVGKLVGARYENIAYKHAWRALYFSVIASALVAFLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
     gene            1366..>1763
                     /locus_tag="SF008_001703"
     CDS             1366..>1763
                     /locus_tag="SF008_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEG8233932.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKCIKTLRLRLNEKGEFVLSIPY
                     FCTFKSVYEFLDKSSSWMNEAKTRFEKKVLKDDELIFLAKKYQIIFDENAKKIYFDKD
                     KIICQNKAKLDLFLRQNAKKIFTFYLKKWS"
BASE COUNT          569 a          187 c          326 g          681 t
ORIGIN      
        1 atatttaaaa aagtaatttt taagtagaat tgttttttaa aaaaatattt aaaaaaagag
       61 ataagataac atcatggcaa aaaaacaact ctccttaaca agacttagtt ttcctatatt
      121 ttgggatttg ctttctaagt atttaaccgt gattatcaat accgctatgg tgtcgcatta
      181 ttctaatttt cttgttggtg ctatgggcgc tggaaatcaa attttagatc tttttatcac
      241 tattttttca tttttaagtg tgggttgtag tgtggtgatc gcacaagcaa ttggtgcaaa
      301 agatcatgtt ttagcaagaa aagtgattca tcaaagtttg ttcttaaatg cacttttagg
      361 ctttgtatgc ggtgtgctta ttttatggca tggggagtat ttgctttatc ttttaaaaat
      421 tccacaagaa ttgctcaaag atagcgaaat ttacttacat atgcttgcaa tttgtttgtt
      481 ttttgatgcc ataggtattg ttttagctgc tattgtaagg gtttataata tggcttattg
      541 ggtcatgttt ataggttttt tgatggatat agtggtgatt tgtggaaatt attatgtttt
      601 gcattataca aagtcagaac tttttggaat agggcttagt aatatttttg ctcgcattgt
      661 tgctatagtt gctttgtttg cgatactttt ttataaactt aaaattcatc ttaaaatcaa
      721 agaaatgata aaacttgaaa aagaagtttt aaaaaaggtt ttaaatatag gaggattttc
      781 agcaggggaa aatcttttgt ggatagtcca atatactata gcttttgctt ttgtagcaag
      841 cttaggtgag gcgagtttga gtgtgcaaac gatttatttt caaatttcaa tgcttatcat
      901 gcttatagga caagctacga gcatagctaa tgaaatcata gtaggtaaat tagtcggtgc
      961 tagatatgaa aatatcgctt ataaacatgc ttggcgtgct ttatatttta gtgtaatagc
     1021 gagtgcttta gtggcgtttt taaactatct ttgtcaagat tttactatgc aaattttagg
     1081 gcttaaagaa gagctaaaaa atttaatgat acctttattt gctctttcaa tctttcttga
     1141 aatttcacga acttttaata tagttatggt taattccttg cgcgcaagtg gcgatgctaa
     1201 gtttccattt tttagcggac ttgtttttat gatgggggta tctttgcctg tgggttatgt
     1261 gctttgtttt cattttaatc ttggaatttt aggagtttgg ataggatttt gtgcagatga
     1321 atttttgcgt ggaatggtaa attcatacag atggaaaagt aaaaaatggc aaggcaaagc
     1381 tctagtttaa aatcatttat ttataaagat gagtgctatt tttattctaa aaaatgcata
     1441 aaaactttaa gattaaggct aaatgaaaag ggtgaatttg ttcttagtat tccttatttt
     1501 tgcaccttta aaagtgttta tgagttttta gataaatcaa gttcttggat gaatgaggca
     1561 aaaacaagat ttgaaaaaaa agttttaaaa gatgatgagt taatcttttt agctaaaaaa
     1621 tatcaaatta tttttgatga aaatgccaaa aaaatttatt ttgataaaga taaaataatt
     1681 tgtcaaaata aagcaaaatt ggatttattt ttaagacaaa atgctaaaaa gatttttact
     1741 ttttatctta aaaaatggag taa
//
LOCUS       DARGEY010000171         1760 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.171, whole genome shotgun sequence.
ACCESSION   DARGEY010000171 DARGEY010000000
VERSION     DARGEY010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1760)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1760)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1760
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.171"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1527
                     /locus_tag="SF008_001704"
     CDS             <1..1527
                     /locus_tag="SF008_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8233933.1"
                     /translation="SEYLFNGRIAIIYSSDYNNNTAELIFSLTNINLFFKTYQINIHS
                     AFYETYQEDIKKINNINLQTIKYLTLKKGTDPSDAMLGIEQAIWNLPEMFKHYSYKEL
                     LQKRKGLNKNAIIVSTGPSLTKQLLLLKQYANKAIIFCVDSSYSILAKHNIKPDYVLS
                     LERIPLTSEFFNNDFGEFDKDVLFILPSLTHPNSIKYLNKFKKDYMLIARYLPFMISL
                     NLKDNGYIGGGMSVAHVAYELAISLECKNIILIGQDLAYNKEGKSHTDDYINLTLHEK
                     DFERDKGRFTTTAYGGKGTVESSEIWTLFRKIFENYAINNKKCIKIYNCTEGGARIEG
                     TIEKPFEEICEEILESEIKKPLIKLKKKTKKEQFEHMLKSYQKIKKNIQLALSFQKEC
                     KKTLRKIQKITLKNEYINMDDIVKDIDNIRNKLSNKRYFFLHEILGPSLYHEESLIAP
                     IYIQSVNNESQRQNKILSWIYANESLIETIIDLIESQNIRIKKAIIPLQDELEKRNLI
                     "
     gene            complement(1555..>1760)
                     /locus_tag="SF008_001705"
     CDS             complement(1555..>1760)
                     /locus_tag="SF008_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8233934.1"
                     /translation="VQNQLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNIL
                     AQSGSYAMSQANAVQQNVLKLLQ"
BASE COUNT          701 a          258 c          253 g          548 t
ORIGIN      
        1 agtgagtatt tgttcaatgg gcgcatagct ataatatatt cttctgatta taataacaac
       61 accgcagagc ttattttttc attgacaaat attaatcttt tttttaaaac atatcaaatc
      121 aacattcact ctgcttttta tgaaacatat caagaagata ttaaaaaaat taataatatc
      181 aatcttcaaa ctataaaata tcttactcta aaaaaaggga cagacccttc agatgctatg
      241 ttaggaatcg aacaggctat ttggaattta ccagaaatgt tcaagcatta tagctataaa
      301 gaattattac aaaaaagaaa gggtttaaat aaaaacgcca tcattgtttc tacaggacct
      361 tcgctcacta agcaacttct tttactaaaa caatatgcca acaaggctat tatattttgt
      421 gtggactctt cttattctat acttgctaag cataacatca agcccgatta tgtattatct
      481 ctagaaagaa ttcctttaac ttcagaattt tttaataatg attttggaga atttgacaaa
      541 gacgttttgt ttattttacc aagtttaact caccccaatt caatcaaata cttaaataaa
      601 tttaaaaaag attacatgct aatagctaga tatctacctt ttatgatttc tttaaacctt
      661 aaagataatg gttatatagg aggcggtatg agtgtggctc atgtagctta cgaattagca
      721 atttcattag agtgtaaaaa tattatttta atagggcaag atttagctta taataaagaa
      781 gggaaatccc atacagatga ctatataaac ctaactttgc acgaaaagga ttttgaacga
      841 gataagggtc gctttaccac tacagcttat ggtggcaagg gaacagttga aagttctgaa
      901 atttggactt tatttagaaa aatatttgaa aactatgcaa tcaataataa aaaatgcatt
      961 aaaatctaca actgtactga aggtggggca agaatagagg gaaccataga aaaacctttt
     1021 gaggaaatat gcgaagaaat acttgaaagc gaaattaaaa aacctttaat aaaactaaaa
     1081 aagaagacaa aaaaagaaca atttgaacat atgctcaaaa gctatcaaaa aatcaaaaaa
     1141 aatatacaac ttgcactcag ttttcaaaaa gaatgcaaaa aaactcttag aaaaattcaa
     1201 aaaatcactc ttaaaaacga atatattaat atggatgata ttgtaaaaga tatagataac
     1261 ataagaaaca aactgagcaa caaaagatac ttttttttac atgaaatttt aggacctagt
     1321 ctatatcatg aagaaagttt aattgcccct atttatatcc aaagtgttaa caatgaaagc
     1381 caaagacaaa ataaaattct atcttggatt tatgctaacg aatctttaat tgaaactata
     1441 attgatctca tagaaagtca aaacataaga attaaaaaag ccattatccc tttacaagat
     1501 gaattagaaa aaagaaattt aatctaaaga gcaaaaattt gctctttaga aaaattattg
     1561 taaaagtttt aagacatttt gttgcacagc gttagcttgg ctcatagcat atgaacccga
     1621 ctgcgcaagg atattgtact tagaaaaatt tgcactttct gcagcgaaat ccacatctct
     1681 tatggttgat tctgctgctt taacatttac ctgggttacg gtaatattat ttatcgttac
     1741 ttggagctga ttttgcacag
//
LOCUS       DARGEY010000172         1681 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.173, whole genome shotgun sequence.
ACCESSION   DARGEY010000172 DARGEY010000000
VERSION     DARGEY010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1681)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1681)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1681
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.173"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>1681)
                     /locus_tag="SF008_001706"
     CDS             complement(<1..>1681)
                     /locus_tag="SF008_001706"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013672.1,HMM:NF025217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEG8233935.1"
                     /translation="KEDVNETKSNNVINYNKDLTPIRSTKYYITIDTEQHVKNVPFAL
                     TGEGLEKECGIYLIMDILEKYNLKGVFFVNIYEHRNFNGIIEKIVKDINDRGHEVGLH
                     YHANVSSKWQKNFPDYSLEEQTEILKYGRDFIFNIIKKYPVSFRGGGYQINMNTFKAL
                     EYSGFKYDSSAFVSYKQDMIYKSINKVVQYGNIIEFPVSTNFLFNYPMKLDLNTQGNA
                     RDMLDIMSSHRFNGLENIVIMLHSFSFIKWYKGNDDKLKSKLKFTGNRYAIGVNNNLI
                     NEFELFCKSISDNEEFENALFENLTLAEIESSLANEKDFVPKDIIKYSNEKSTCPICE
                     NNVSFQEYRNRKNAICPKCRSLERMRFKYLYLKRFLHINTMKNKNILHIGPAMCVYNK
                     LRSLNQINYITSDPFSDSIYNYPLENIPFADGYFDIIICVGILIHVLDDDKCLREMHR
                     LLSKNGKLILWVGDLYNDKTVERYNRADFDKMKAISFDYPDNLSDGKTILLDDGSIGY
                     NPRYSTRTYGKDFVDKLKNMGYDADIIKSQDIAGYKKYGLREDDVLIIGSR"
BASE COUNT          589 a          284 c          136 g          672 t
ORIGIN      
        1 attctacttc ctataattaa aacatcgtct tctcttaatc catatttttt atatccagct
       61 atatcttgag attttataat gtctgcatca taacccatat tctttaactt atctacaaaa
      121 tctttaccat aagttctagt cgaatacctt ggattataac ctatgcttcc atcatctaac
      181 aatattgtct ttccatctga caagttatca ggataatcaa aacttattgc tttcatctta
      241 tcaaaatcag ctctattata cctttcaaca gttttatcat tatataaatc tccaacccaa
      301 agtattaatt ttccattttt agataataat ctatgcatct ctcttaaaca tttatcatca
      361 tctaatacat gaattaaaat acctacacat ataataatat caaaataccc atctgcaaat
      421 ggaatatttt ccaatggata attatatata gaatcagaaa atggatcaga agttatatag
      481 ttaatttgat ttaacgatct taacttatta tatacacaca tagcaggacc tatgtgtaaa
      541 atatttttat ttttcatagt atttatatgt aaaaatcttt ttaaatacag atatttaaat
      601 ctcattcttt ctaaagatct acattttgga caaatagcgt tttttctatt tctatattct
      661 tgaaaagaga cattattctc acatatagga caagtactct tctcattact atattttatg
      721 atatcttttg gaacaaaatc tttttcattt gccaaggaac tttcaatttc tgctaaagtt
      781 aaattttcaa acagtgcatt ttcaaactct tcattatctg aaatactttt acaaaataac
      841 tcgaattcat taattaaatt attattaaca cctattgcat atctattacc cgtaaatttc
      901 aattttgatt ttaacttatc atcatttcct ttataccatt ttataaaaga aaaagaatgc
      961 aacattatca ctatattctc aaggccattg aatctatgtg aactcattat gtctaacata
     1021 tctcttgcat ttccttgagt atttaaatcc aatttcatag gataattaaa taaaaaattt
     1081 gtagatactg gaaattcgat aatattacca tattgcacca ctttattaat agacttataa
     1141 atcatatcct gtttataaga cacaaaagca gatgaatcat atttaaaacc actatattcc
     1201 aatgctttaa aagtattcat attaatttga taaccacccc ctctaaacga aacaggatat
     1261 tttttaataa tattaaatat aaaatctcta ccatatttta atatttcagt ctgctcttct
     1321 aatgaataat ctggaaaatt tttttgccac ttagatgata cattggcatg ataatgtaaa
     1381 ccaacttcat gtcctcgatc atttatatcc ttaactattt tttcaataat tccattaaaa
     1441 tttctatgtt catatatatt tacaaaaaaa acacctttta aattatattt ttctaatata
     1501 tccattatta aataaattcc acattctttt tccaagcctt cacccgttaa agcaaatggt
     1561 acatttttaa catgttgctc cgtatctatt gttatataat attttgttga tctaattggt
     1621 gttaaatctt tattataatt tataacatta ttacttttgg tttcatttac atcttccttg
     1681 t
//
LOCUS       DARGEY010000173         1677 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.174, whole genome shotgun sequence.
ACCESSION   DARGEY010000173 DARGEY010000000
VERSION     DARGEY010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.174"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            43..>1677
                     /locus_tag="SF008_001707"
     CDS             43..>1677
                     /locus_tag="SF008_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013463592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEG8233936.1"
                     /translation="MDNFIKKAYDIVLKDYFDDFSPPSDNIPFCVLASKAYANNSLCF
                     NESISLIFVYKDIKAFHLKPMIKAFIEILNDAHLQIDSVILEFNGLYNASNELKTSII
                     QTRFICGSRILFKGIKTKFESILKENKNDFAKLLLENFKEFDIPFIKQEFNILKDFGG
                     LNHLRSLESLLVLFKTSPKNYALNFIDEKNLSELRLAGDFLLSLKSAMNLLSAKDEDE
                     FLLINVHDLSELMYKKAKKHFGANELLVQKALQSMHTIGFYTHFLAKQIQDGLNHTLK
                     QEYKFKTLVEVLEYLLKLEDKHVIFDLNLVFALRRLKYGKKDIEKALILFEKIFYKRH
                     SFCVLKLLLDSGILKDLCKPFWTVRFLSDEEGNYSFDEQVFLMLSEFEKYEDELEILQ
                     KLKTDEKMILKLVILLSAIESENEISLAGIYRAYCSKFDLKNEILEWGLKIFKNNNAL
                     KDLVEKEDIYNPIVVSSLVSKLENLENLELLYTLTWLKAKALNYNAFYFRVLDKLLEN
                     AKQGFEDENLLEESARRVKKELTLKRSKIFLEQDEIL"
BASE COUNT          622 a          165 c          273 g          617 t
ORIGIN      
        1 tttcttaagc aaggggcgtt tagcttatat cattctaaaa atatggataa tttcataaaa
       61 aaagcttatg atatagttct taaagattat tttgatgatt tttcacctcc aagtgataat
      121 atcccttttt gtgttttagc aagcaaagca tatgcaaata atagtctttg ttttaatgaa
      181 agtatttctt tgatttttgt ttataaagat attaaggctt ttcatttaaa acctatgatt
      241 aaggctttta tcgaaatttt aaatgatgcg catttgcaaa ttgattcggt tatcttagaa
      301 tttaatggac tttataatgc tagcaatgag cttaagactt ctataataca aactcgtttc
      361 atatgtggtt ctaggatttt atttaaaggg attaagacaa aatttgagag tattttaaaa
      421 gaaaataaaa atgattttgc caagcttttg ctagaaaatt ttaaagaatt tgacattcca
      481 tttataaagc aagaatttaa tatcttaaaa gattttggcg gattaaatca tttaagatcc
      541 ttagagagtt tgcttgttct ttttaagact tctccaaaaa attatgcttt aaattttata
      601 gatgaaaaaa atttaagcga gttgcgttta gctggagatt ttttactttc tttaaaatca
      661 gcgatgaatt tattaagtgc taaagatgag gatgaatttt tacttattaa tgttcatgat
      721 ttgagtgaat taatgtataa aaaagctaaa aaacattttg gagcaaatga gttgttggtt
      781 caaaaggctt tgcaaagtat gcatactata ggtttttata cacacttttt agcaaagcaa
      841 attcaagatg gattaaatca tactcttaaa caagaatata aatttaaaac tcttgtggaa
      901 gttttagaat acttattaaa acttgaagat aaacatgtta ttttcgatct taacttggtt
      961 tttgccctaa gaagattgaa atacggtaaa aaagatatag aaaaagcttt aatacttttt
     1021 gagaaaattt tttataaaag gcatagtttt tgtgttttaa aacttttgct tgatagtgga
     1081 attttaaaag atttatgtaa gcctttttgg acagttcgtt ttttaagcga tgaagaagga
     1141 aattatagtt ttgatgagca agtttttctt atgttaagtg aatttgaaaa atacgaagat
     1201 gagcttgaga tactccaaaa acttaaaacc gatgaaaaaa tgattttaaa gcttgtgata
     1261 cttttaagcg ctatagaaag tgaaaatgaa atttctttag caggcatata tagagcgtat
     1321 tgctctaaat ttgatttaaa gaatgaaatt ttagaatggg gtcttaagat atttaaaaac
     1381 aataatgcct taaaagatct tgtagaaaaa gaagatatat acaatcctat tgttgtaagt
     1441 agcttggttt ctaagctaga aaatttagaa aatttagagc ttttatatac tttaacttgg
     1501 ctaaaggcta aggctttaaa ttataatgct ttttatttta gagttcttga taaactttta
     1561 gaaaatgcaa aacaaggttt tgaagatgaa aatctacttg aagaaagcgc aagaagagta
     1621 aaaaaagaat taacacttaa aagaagtaaa atttttttag agcaagatga aattttg
//
LOCUS       DARGEY010000174         1675 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.175, whole genome shotgun sequence.
ACCESSION   DARGEY010000174 DARGEY010000000
VERSION     DARGEY010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.175"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..608
                     /locus_tag="SF008_001708"
     CDS             <1..608
                     /locus_tag="SF008_001708"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-2,3-sialyltransferase"
                     /protein_id="HEG8233937.1"
                     /translation="MQSYLDYFEKSNEWVRKEFFPFKERLFQKQDLSNYKENYKLKEM
                     KSEYWDKIAEFILDVVKTKDKIIEGKDIIIQSKIMQFNQIQTKLFFQVKYGTAKSRIQ
                     NQLSYKLGQTMIVNSKSFLGYLIMPIALLSTVVSYRQYQKIYQEKIKKDFSLKLPSLK
                     QYPDYQEAIKLKNHISYKLGEALIKAHKNWYGGGGVYQIFI"
     gene            668..>1675
                     /locus_tag="SF008_001709"
     CDS             668..>1675
                     /locus_tag="SF008_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG8233938.1"
                     /translation="MNNVLKIALIADELTYASLKEEDGVVLRNVTPINYKVLFYFWKP
                     DFLFVESAWHGCKNKWKYQIASYPDYPKRNNKKLQKCVDFAKTLNIPTVFWNKEDHVH
                     FDRFIESAKLFDFIFTVDENCISKYKSYVGENSFVGVLPFAVQSKFHNFTGFNFTLNK
                     ANFVGSYSRHIHEKRRFYQDMMFKLSSEINNLDVFDRNSNRKSTNYRYPIFKGMQIYP
                     SVEYKKTAQIYKKYLISLNVNTIENSPTMFSRRLIEIIACGGIAITNHTSAVEKYFKD
                     YCYSFQTEKELRNMLYKFQKNGLSEDDKIKLKNGAEFIAKNHTWKQRLEQIVDTIGIK
                     KC"
BASE COUNT          677 a          175 c          251 g          572 t
ORIGIN      
        1 taatgcaatc ttatcttgat tattttgaaa aatcaaacga atgggtaaga aaagaatttt
       61 ttccttttaa agaaagatta ttccaaaagc aggatttaag taattataaa gaaaattata
      121 agcttaaaga aatgaagtca gagtattggg ataaaatagc tgaatttata ttagatgtag
      181 taaaaactaa agataaaatt atagaaggaa aagacataat tatacagtct aaaataatgc
      241 aattcaacca gattcaaact aaattatttt ttcaagttaa atatggcact gctaaatcta
      301 gaattcaaaa tcaattatct tataaactag ggcaaactat gatagtaaat tctaaatctt
      361 tcctaggtta tttaataatg cctatagcat tgttaagtac ggtagtatca tacagacaat
      421 atcagaaaat ttatcaagag aaaataaaaa aagatttttc cctaaaatta ccttctttga
      481 aacaatatcc tgattatcaa gaagctatta agcttaaaaa tcatatttct tataaattag
      541 gagaggctct tataaaagct cataaaaatt ggtatggtgg ggggggggta tatcaaattt
      601 ttatttgaaa tatacaagtt gagaaaaaaa tagtataatt ttattaaaaa atattttggt
      661 gttatgcgtg aataatgtat taaaaatagc tttaatagca gatgagttaa cctatgcttc
      721 tttaaaagaa gaagatgggg ttgttttaag aaatgtaacc ccaattaatt ataaagtgtt
      781 gttttatttt tggaaacctg actttttgtt tgttgaatca gcttggcatg gttgcaaaaa
      841 taaatggaag tatcaaattg cctcatatcc tgattatcca aaaagaaata ataaaaaact
      901 acaaaaatgc gtagattttg ccaaaacatt aaatattccg acggtatttt ggaataaaga
      961 agatcatgtg cattttgata gatttataga aagtgcaaaa ttatttgatt ttatttttac
     1021 cgttgatgaa aactgtatat caaagtataa gtcttatgta ggagaaaatt cttttgtggg
     1081 tgttttgcct tttgctgttc agtctaaatt tcataatttt actggattta attttacttt
     1141 aaataaggca aattttgttg gaagttattc aagacatata catgaaaaaa gaagatttta
     1201 tcaagatatg atgtttaaat tatcttctga aattaataat cttgatgttt ttgatagaaa
     1261 ttcaaataga aaatctacta actatagata tccaatattt aaaggtatgc aaatttatcc
     1321 ttcagtagag tataaaaaaa ctgcgcagat atataaaaaa tatttaattt cattaaatgt
     1381 taatactatt gaaaattctc ctactatgtt ttcaagaaga cttatagaga ttatagcttg
     1441 tggaggtata gctattacta atcatacttc agccgttgaa aaatatttta aagactattg
     1501 ttattcattt caaacagaaa aagaattgcg aaatatgctg tacaaatttc aaaaaaatgg
     1561 tttaagtgaa gatgataaaa tcaaattaaa aaatggagca gaatttattg caaaaaatca
     1621 tacttggaaa caaagactcg agcaaattgt agatactata ggcattaaaa aatgt
//
LOCUS       DARGEY010000175         1666 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.176, whole genome shotgun sequence.
ACCESSION   DARGEY010000175 DARGEY010000000
VERSION     DARGEY010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1666)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1666)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.176"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            120..443
                     /locus_tag="SF008_001710"
     CDS             120..443
                     /locus_tag="SF008_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4878 domain-containing protein"
                     /protein_id="HEG8233939.1"
                     /translation="MACGSSNPEDLAKNFTKDLYSGNTKSVMSYIDLSEAKSDEEKTF
                     VSDKITQVVAENAAKAKRMGGVKNIQIEEKTINKDSAKIRVLVLFNNDNNQSSNVFLA
                     KKDRK"
     gene            445..1018
                     /locus_tag="SF008_001711"
                     /pseudo
     CDS             445..1018
                     /locus_tag="SF008_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343659.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1117..1464
                     /locus_tag="SF008_001712"
     CDS             1117..1464
                     /locus_tag="SF008_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233940.1"
                     /translation="MKKSILFTSALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLQVGNFLESKISYGIPATPNTQAIPV
                     ARKIEIQCYKKAY"
BASE COUNT          631 a          219 c          211 g          605 t
ORIGIN      
        1 gaataaaaaa ataattttga attattttgc tataattatg aatattttaa tttatactat
       61 caaaagaaaa aaatgaaatt ttttaaactt tctttcttgg ctttagttgc ctttttttag
      121 tggcttgcgg ttcttcaaat cctgaagatt tagctaaaaa ttttacaaaa gatctttaca
      181 gtggtaatac taaatctgtt atgagttaca ttgatcttag cgaagctaaa agcgatgaag
      241 aaaaaacatt tgttagtgat aaaatcactc aagttgttgc tgaaaatgca gccaaagcaa
      301 aaagaatggg tggtgttaaa aatattcaaa ttgaagaaaa aacaatcaat aaagattctg
      361 ctaaaatcag agttttagtg ttatttaaca atgataataa tcaaagcagc aatgtttttc
      421 ttgctaaaaa agatagaaaa tagcttgttt tacttaaata aaattttata ttttttctta
      481 attttatttt tattgattgg aattttgggt ttctttataa attccaatcc ttcaaatcaa
      541 atcatcaaaa aaccctatct accttttctt gaaataggtg atcttgtctt tcgtgcagga
      601 ataggaagtg aaagtttttt aatagaaaat ttaagtcaaa gcccttattc tcatatcgct
      661 atgctagtta aaacttctcc aactatactc atacatgcta caacagatga tgacaaaaat
      721 gctaaagacc aagttatctt aagctctatg gatgattttt taaaactgag tcataaaatt
      781 gctattaaaa gattaaaatt tgatgaaaaa accaaacaaa aaatagttgc taaagctttg
      841 gaacatttag gcagaaaatt tatcataagt acagataaag atgcttttta ctgcactact
      901 ttttttagaa caatctatta actccattac cccatttcat cttcaatata ctctaatcaa
      961 agctcctttt aatgaaggtt tatatctttt tccacaagct ttttttgaaa ataattaaag
     1021 cgtattaatt ttatgaaagt caaaaatttt taatttcaca ttcacttcac ttaaaaattt
     1081 tataatgtca tcactttaca ttaaggagaa ataattatga aaaaaagtat tttattcaca
     1141 tcagcacttt tagctagctc aatgcttttt gcagatagtc taaaacttga aggtactatt
     1201 gcacaaattt atgataacaa taaaaccttg cttattgact ctatttatgg cggacaaatg
     1261 gctataaaag ttctaccaaa taccgaaata gaaatggatg attgtggtat ttttggaaca
     1321 gataaagatg gaacttttaa agatttacag gttggaaatt ttttagaaag taaaatttct
     1381 tatggaatac ctgctacacc aaatactcag gctattccag tagctagaaa aattgaaatt
     1441 caatgttata aaaaagctta ttaatataaa tcccttaaca agggatttat aaaaatcatt
     1501 cttcggcaaa ctacttcatt actcttaaat aaaaatttaa actctttttt aacaagcaat
     1561 ttataaaata acacttatat tttcatctaa ggcaaataat gaaaaaatgg atttttattg
     1621 ttttttgttt tatattaggt tttattattc atatatttta tatagg
//
LOCUS       DARGEY010000176         1653 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.177, whole genome shotgun sequence.
ACCESSION   DARGEY010000176 DARGEY010000000
VERSION     DARGEY010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1653
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.177"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            37..764
                     /locus_tag="SF008_001713"
                     /pseudo
     CDS             37..764
                     /locus_tag="SF008_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000323697.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3944 domain-containing protein"
     gene            783..>1653
                     /locus_tag="SF008_001714"
     CDS             783..>1653
                     /locus_tag="SF008_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233941.1"
                     /translation="MENICQFIIENIDKNSLNTKKIKLVFNMQEQEITTISKIFKVSS
                     EHIIAFYDTSTSFNYFSKTTGICFTGKEVIFKRKEDEVLMKINYEDFKEANKSLPEKT
                     TTLQDIKFPISFHNLGTSYLSFDDFKKKNYIEENDELIINFLHILTSKNNIESFKNES
                     MFPQALEKTNESIKENYIKVIIKIILDQYGFLDEKRSIKIFALMNKINVASETRYKIQ
                     DFLHNKHSSFEDLLNIIKQESRFMQFKYILISLIKDLIDIDFEDNKIYNFLYENKDIF
                     KIKDLKEIYWIKEI"
BASE COUNT          709 a          205 c          222 g          517 t
ORIGIN      
        1 atacaaagtt aaaaatttta aaaacaagga gaaaatatgg cctacagata tgataaagat
       61 ttagaattct taaaagaatt aagcagtcca gaactcgatg agcttgtaaa aattttaacc
      121 catgataaag acgggaaagt tcgttttact gaagagttaa ccaataatga tctttataaa
      181 aaacattatc cagatcataa agaatatatc gaactcattt tagaagaatt tcaaaaattt
      241 ggaggaaata gtattcttaa tatatttcga ggtggtggag ttttataatg aaattctacg
      301 cgatgttgta aaaaaatttg atgtaaaatt tgatgaaaat gaaagtacaa actccataga
      361 aacatcactt ttatgcaaat taatagaaga agagttaaaa aattctcaag atgaaaatac
      421 attaagagaa cttgtaaata ttttcgaact tggcatttct aatattaata aacaaacagt
      481 tgtaatggga ttgcaatctc tcattaaaat aggtggattt aaaagctatc aaattgcagt
      541 aatagttgca aatcaagtta tgaaagtttt actaggaaga ggtttatctc ttgcggcaaa
      601 tgcaacactt acaagagctt taagtctttt ttctggtccg gtaggttgga caattatgac
      661 cacatggact gcattggatt tagctagccc agcctatagg gtttactata ccagcagtac
      721 ttcaaattat aattttaaga ctaaaacaca atacaaaaaa ctaaacacaa ggaaatgcat
      781 taatggaaaa tatttgccaa tttatcatag aaaatattga taaaaattca ttaaatacaa
      841 aaaaaataaa acttgttttc aatatgcaag agcaagaaat tacaacaatt tcgaagatat
      901 ttaaggtatc ttcggaacac attattgctt tttatgatac ctcaacatcc tttaattatt
      961 ttagcaaaac taccggaata tgttttactg gcaaagaagt tatctttaaa agaaaagaag
     1021 atgaagtttt aatgaaaatc aactatgaag atttcaaaga ggcaaataaa tccttacctg
     1081 aaaaaacaac aactcttcaa gacatcaaat ttcccatatc ttttcataat cttggaacat
     1141 cttatctttc atttgatgat ttcaaaaaga aaaactacat agaagaaaat gatgagctta
     1201 taataaattt tttacacatc ttaacttcaa aaaataacat agaaagtttt aaaaatgaaa
     1261 gtatgtttcc acaagcctta gaaaaaacaa acgaaagtat taaagaaaac tatataaaag
     1321 ttatcattaa aataatatta gatcaatacg gttttttaga tgaaaaaaga tcaatcaaaa
     1381 tttttgctct aatgaataaa attaatgttg cttcagaaac aaggtataaa atacaagatt
     1441 ttttacataa taaacattct agttttgaag atttgctaaa catcataaaa caagaatcta
     1501 gatttatgca attcaaatat attttaattt cactaataaa agacttaatt gatatagatt
     1561 ttgaagataa taaaatttat aattttttgt atgaaaacaa agacattttt aaaatcaaag
     1621 accttaaaga aatctattgg ataaaagaaa tca
//
LOCUS       DARGEY010000177         1643 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.178, whole genome shotgun sequence.
ACCESSION   DARGEY010000177 DARGEY010000000
VERSION     DARGEY010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.178"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1374
                     /locus_tag="SF008_001715"
     CDS             <1..1374
                     /locus_tag="SF008_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8233942.1"
                     /translation="KKAMIGYGNDPLDALQGIEQFVHNLPKMLTHSSYKELINKRKNL
                     SKTAIIVSTGPSLIKQLPLLEKYQNKATIFCADSSYPILAKHNIKPDYVCMLERTSLT
                     AEFFNHDFKDFDKDIVFICASLIHPNAIAYLEKNNREYILISRFLSFALFIACHDYGY
                     FDQSPSVAHMSYIIAAKLCHKNIIFIGQDLAYAENGDSHPQEYQNSSTFESNIYQKIE
                     CLGYGGKNSVKTHSIWLLFKQIIEQLILDYPYINTYNCTEGGAWIEGTIEQSFKTTCD
                     KLLLDDLNKPFIKLKKPNIQKQNELMLKSYAKIYKSIKHCIEFKKQTLATIEDIESSY
                     TTLNYLSLEESKEILDILIQIIDNFKTKLENVNMVDFYEILGPLLMQFELNLARIYVL
                     NPKTLEDSFNKSVLWIKEHLEFIHMVYGHIEAQENALFKNIIPLEEELKKRGFKKYLQ
                     RIKNANK"
     gene            1361..>1643
                     /locus_tag="SF008_001716"
     CDS             1361..>1643
                     /locus_tag="SF008_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8233943.1"
                     /translation="MQTSDIFKKNLDSMKGNVYKKLKEELKNFQELRDFSFTIGKDSL
                     NINLICKKNLKKIYQDPVQELNENLVFYQQNYYNHPFLFFYGLGNGILYK"
BASE COUNT          659 a          219 c          225 g          540 t
ORIGIN      
        1 aaaaaagcta tgataggcta tggtaatgat ccgctagatg ctcttcaagg tatagaacaa
       61 tttgttcata atcttcccaa aatgcttact cattctagct ataaggaatt aatcaacaaa
      121 agaaaaaatt taagcaaaac tgctatcatt gtttcaacag gaccaagttt aatcaaacaa
      181 ctacctttgc ttgaaaaata tcaaaataaa gccacgattt tttgtgcaga ttcttcttat
      241 cctattttgg ctaaacataa cataaagcct gattatgtct gcatgcttga aagaacaagt
      301 ttaacagccg aattttttaa tcatgatttt aaggattttg ataaagatat agtctttata
      361 tgcgcatctt tgatacaccc taatgctatc gcttatctag aaaaaaataa tagagaatat
      421 atactcatat caagattttt atcttttgct ctctttattg cttgtcatga ttatggatat
      481 tttgatcaaa gtcctagtgt cgcacatatg agctatataa tagcggctaa gctttgtcat
      541 aaaaatatca tttttatagg acaagattta gcctatgcag aaaatgggga ttcgcaccct
      601 caagaatatc aaaactcatc aacatttgaa agtaatatat atcaaaaaat agaatgtcta
      661 ggatatggtg gtaaaaattc tgtaaaaacg cattctattt ggctactctt taaacaaatt
      721 atagaacaac ttattttaga ttatccatat attaatactt ataattgcac agaaggcgga
      781 gcatggatag aaggaactat agaacaatct tttaaaacaa cttgtgataa acttctgctc
      841 gatgatttaa acaaaccctt tattaagctt aaaaaaccaa atattcaaaa acaaaatgaa
      901 cttatgctca aatcttatgc aaaaatctac aaaagcataa aacactgtat agaatttaaa
      961 aagcagactt tagctactat tgaggatata gaatctagct atacaacttt aaattattta
     1021 agcttagaag aaagtaagga aattttagat atcttgattc aaattattga taattttaaa
     1081 accaaactag aaaatgttaa tatggtcgat ttttatgaaa ttttaggacc gcttttaatg
     1141 caatttgaat tgaatcttgc taggatttat gttttaaatc caaaaactct agaagatagt
     1201 tttaataaat ctgtattatg gatcaaagaa catttagaat ttatacatat ggtttatgga
     1261 cacatagaag cccaagaaaa tgctttattt aaaaatatca taccattaga agaagagctg
     1321 aaaaaaagag ggtttaaaaa atatttacaa aggataaaaa atgcaaacaa gtgatatttt
     1381 taaaaaaaat ttagattcta tgaaaggaaa tgtatataag aagttaaaag aagagctaaa
     1441 aaattttcag gagcttagag acttttcttt taccatagga aaagattctt taaatataaa
     1501 tctgatttgt aaaaaaaacc taaaaaaaat ttaccaagat ccagtacaag aacttaatga
     1561 aaatttagtt ttttatcaac aaaattacta taatcatcct tttttatttt tttatggatt
     1621 aggtaacgga attttatata aag
//
LOCUS       DARGEY010000178         1638 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.179, whole genome shotgun sequence.
ACCESSION   DARGEY010000178 DARGEY010000000
VERSION     DARGEY010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1638)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1638)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1638
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.179"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1570)
                     /gene="cas9"
                     /locus_tag="SF008_001717"
     CDS             complement(<1..1570)
                     /gene="cas9"
                     /locus_tag="SF008_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344900.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HEG8233944.1"
                     /translation="MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESL
                     ALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPY
                     ELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQ
                     SVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSF
                     SKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNLPLAFMFVALTRIINLLN
                     NLKNTEGILYTKDDLNTLLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKK
                     YKEFIKALGDHSLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKD
                     HLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNP
                     VVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNYSQRAKIEKEQNENYKAKKDA
                     ELECEKLGLKINSKN"
BASE COUNT          485 a          282 c          184 g          687 t
ORIGIN      
        1 tatttttact atttattttt aagcctagtt tttcacattc aagttcggcg tcttttttgg
       61 ccttgtagtt ttcattttgc tctttttcta ttttagctct ttggctgtaa tttttaccta
      121 cttctcttgc taattcaatg tttattttat gcactttgcc gtatttttta agtaaagcat
      181 ttaagacctt tctgtattct ttaatcgccc ttaaaaccac aggattagtt acctcatctt
      241 tataataagt ttcattaaat gcgggtaaaa aatctttttt atcttcattg attgctactt
      301 ttaaattaag ctcattacaa gcttcatcgt attttttacc ttcaagcatt aaaggagtga
      361 taagttttaa ggctttaaaa cttatattta aatggtcttt aaattccaat ttgcttaaac
      421 tatcaatttg attttgattt aaatcgtatt ttgctaaagc ctttttaagc ttaatctcat
      481 cttttataag ggtaatatct tttgctattt catttaaatc atcttggctt aaactatgat
      541 cacctagggc ttttataaat tctttatatt ttttaaactc aataaaataa gttccttttt
      601 ctcctttaaa ttcataatca tcacttaaac ccaaaagctt ttttgtttgt ttataagtta
      661 gagtgccgtt ttttaaaact tcattcaaaa gcgtgtttaa atcatctttt gtatataaaa
      721 ttccttcagt atttttaaga ttgtttaaaa gattgataat tcttgtaagc gctacaaaca
      781 taaaggctaa gggcaaattt tttggcgctc ttttttcatc ggtaaaaaaa ctacaatttc
      841 ccaccaaatg agaaaaatct tttaaagccc ttttataaaa tgctacacta agcacctctt
      901 cttcaaattt ttttgaaaaa gaaaagccaa attctctttg ttttttaaaa ataagcttta
      961 attcatcttt taaaaaactt tgcgctatgc agcgttcata actttctttt ttatttctaa
     1021 catttgtaaa ttctttggaa ttttctttga atttttgaaa atactcttta taaagatact
     1081 cgcccacact ttgataattt gctagttttt cttcattttg cttgatagct tttaaaatcg
     1141 cacctttttc tttatcatca ctatttttaa tatcatcata gccacgcctt tttgcaatat
     1201 gtaaaatcac tcttgcaaaa tcttgcttac ttaaaagctc gtttaaagct ctaaatctta
     1261 actcataagg gctaattaaa gatcctttat aagccttggc taaactttca tcaaagcttt
     1321 gataatcttc gtaatttaac ttaaattcat ttgcgattaa atgttttaag tgatttagcc
     1381 ttgctttgcg tctagcaagg cgttttctag cacttcttgc aaggcgtctt ggcaaggcta
     1441 aggattctcc tgttttggga ttttcagcct ttgtaaaaat cctaactcca caatctttta
     1501 actcatcatt ttcactaaat gcccagccaa tagagcttat tcctatatca aatgccaaaa
     1561 ttcttgccac actagatcct ttttaatatt tatgatttgt gtataattat aatacaaaaa
     1621 tcatttttta aacaaaca
//
LOCUS       DARGEY010000179         1569 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.180, whole genome shotgun sequence.
ACCESSION   DARGEY010000179 DARGEY010000000
VERSION     DARGEY010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1569)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1569)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.180"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            6..788
                     /gene="fdhD"
                     /locus_tag="SF008_001718"
     CDS             6..788
                     /gene="fdhD"
                     /locus_tag="SF008_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HEG8233945.1"
                     /translation="MDPLFTTQILKYKGDESFTCNDTLVREIKLEIFINDEKVGALMA
                     TPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPEAIEASKISSDAKFSKDEILKQMSTFYTQCELYEKTGCVHTAKLF
                     VDEKTFFIGEDIAQHNTIDKALGKARLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPV
                     LVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            781..1518
                     /locus_tag="SF008_001719"
     CDS             781..1518
                     /locus_tag="SF008_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEG8233946.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNINIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKTYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRAMELM
                     ENYSILQKDIEEYANKRFKELFLKGKK"
BASE COUNT          614 a          171 c          307 g          477 t
ORIGIN      
        1 aaggtatgga tccgttattt acaactcaaa ttttaaaata taaaggtgat gaatctttta
       61 catgcaatga tactttagtg cgtgaaatta agcttgaaat ttttattaat gatgaaaaag
      121 taggtgcttt aatggcaact cctgtagatg aacaggcatt agcaatagga tatttaatga
      181 gtgaaaatat cattgcgaaa gtaagcgata ttgagagcat agaaacaaaa gatgatggta
      241 tgagtgtgca tattaaagca aagattgata aagaaaattt agcaaagctt aatgctgaag
      301 gtgtagttat aagtggttgc ggtagagcac atactgccaa tatcgatcca gaagctattg
      361 aagcgagtaa aattagttct gatgcaaaat ttagcaaaga tgaaatttta aaacaaatga
      421 gtacttttta tactcaatgc gagctttacg agaaaacagg ctgtgtgcat acggctaagc
      481 tttttgtaga tgagaaaact ttttttatag gtgaagatat agctcaacat aataccatag
      541 ataaagcttt aggaaaagca cgtttagctg gggttgattt aagtcaatgt tttttaatgg
      601 ttagtggaag gctaagttct gaaatggtag ctaaagcagt tatgcataaa attccagtgc
      661 ttgtttcacg cacggctcct acttgtttag gggttatgat agcaagaaaa tttgatttaa
      721 cgctttgtgg ttttgctaga gaaaataaga tcaatattta tagtggagaa tttagaattc
      781 atggataaaa atcaagaaaa agaaatcatc tcatacatga gagaattgtt aaatagcaat
      841 gaaaaattag attgtggtac ggcttttaaa attgcaaaga aatttaatat aaatatagaa
      901 aaaatcggac aattagccga tgaaaatcac atgagaattg ataattgcga gttggggcaa
      961 tttggacatt tagattttga aaaagcaaag attgaagtgc ttaaaaaaat agaacctagt
     1021 ttagatgaaa agcgtagaat tttttgtaaa gatgcaagag atattgctaa agaaggttgt
     1081 ggacttaaaa gtatgcgttc agctttaaaa acttataagg ttgatgtaaa gtattgtcaa
     1141 cttggttgtt ttaaagaaaa aaaaggtaag caatttatag taagaacaaa aacttggatt
     1201 gaaaatgcgg atggagattt gctttttggt cgaggaaaaa cagaactttt agaacttatc
     1261 ggacaaacag gtagtttatt acatgcttct aaacttatgg ggattaatta taaaaaagct
     1321 tggatgcatt tacaaacctt acaaaaaaat tctcaagaaa ttttagttag cacaagacaa
     1381 ggacgctcta aagaatcagg aacaaaactt actcctagag ctatggaatt gatggaaaat
     1441 tactctattt tgcaaaaaga catagaagaa tacgctaata aacgctttaa agaattgttt
     1501 ttaaaaggaa aaaaataaat cttctatcaa aaaatactaa tacataattt ttttataatt
     1561 aattaatat
//
LOCUS       DARGEY010000180         1447 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.181, whole genome shotgun sequence.
ACCESSION   DARGEY010000180 DARGEY010000000
VERSION     DARGEY010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1447
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.181"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            4..429
                     /gene="exbB"
                     /locus_tag="SF008_001720"
     CDS             4..429
                     /gene="exbB"
                     /locus_tag="SF008_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HEG8233947.1"
                     /translation="MEFLKDYIDLIIFLILGIMAFIAFWCVVERMLFFRKINFKNYEN
                     QEQFDDAISENLTTIYIIYSNAPYIGLLGTVIGIMVTFYEMGLAGNIDVKSIVVGLSL
                     ALKATALGLLVAIPALMAYNALLRKVSLLSNAYKANKNA"
     gene            422..811
                     /gene="exbD"
                     /locus_tag="SF008_001721"
     CDS             422..811
                     /gene="exbD"
                     /locus_tag="SF008_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HEG8233948.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPS
                     SENATNISNNEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAK
                     FESFVKIIDFLKAKEHENFQILTEKNK"
     gene            808..1447
                     /locus_tag="SF008_001722"
                     /pseudo
     CDS             808..1447
                     /locus_tag="SF008_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
BASE COUNT          592 a          223 c          181 g          451 t
ORIGIN      
        1 aatatggaat ttttaaaaga ttacatcgat ttaattatct ttttaattct aggaattatg
       61 gcatttatag ctttttggtg tgttgtagaa agaatgctat tttttagaaa aattaacttt
      121 aaaaattatg agaatcaaga gcaatttgat gatgcgatta gtgaaaattt aaccaccata
      181 tatatcatct attccaatgc cccttatata ggacttttag gcactgtaat aggcatcatg
      241 gttacatttt acgaaatggg cttggcgggc aatatagatg tcaaatctat agtcgtggga
      301 ctttctttag ctcttaaagc tacagcctta ggacttttgg ttgctattcc tgctttaatg
      361 gcttataatg ccttacttag aaaagtttct ctcttaagca atgcttataa ggcaaataaa
      421 aatgcttaaa ctaccaaaaa atgaaggttt aaatatagtc ccatttatag acattatgct
      481 tgttttgctt gctatagtgc ttagtatttc aacctttatt gcgcatggaa aaattcaaat
      541 ctcacttcct tcaagtgaaa atgctaccaa tataagcaat aatgaaaaaa aacttcttat
      601 aaccatagac gaaaaaaata ctttttattt aaatgataaa ttagctgatt taaatgaagt
      661 tcaaaatgct attttttcac ttgataaaaa aaccatagta gaactaaaaa gcgataaaaa
      721 tgctaaattt gaaagctttg taaaaattat agatttttta aaagccaaag aacatgaaaa
      781 ttttcagatt cttactgaga aaaacaaatg aaaactttat ttttaaatca taaataccaa
      841 gcttcttata taacttttat agtctttata cctttacttt ttgtcatttt tcactcaaat
      901 gactttttta aaatggaaat taaaaatgaa gattcttttt ctttagcaat aaaacaattt
      961 acccaaacta atccaacaaa tgagactaaa ccaacagaat ccattataga acctatcaaa
     1021 ccaaaacctc agccaaaagt tattaaaaaa aactcctgaa aaaattcaaa aaaaggtaaa
     1081 aaaaatacct ccacgcccaa taccaaataa aaccccaata acaccaactc aagaagttaa
     1141 aacttttaca aaaacaactg atacaaatgt caaacctaaa atcacccaat taacacaagg
     1201 aaaagataat caccctgtat taaaagaaat tcaaaaagct atacaacaag cacaatttta
     1261 tccaaggcaa gcaaaaaaaa tgcgtatgca aggaactgta aaagtagaat ttttatggaa
     1321 agaaaacaaa actttagcag atttaaaaat catagaaagc tcaggatatg atttattaga
     1381 taaaagtgct ttagaaagca taagaaaagc ttctttaaat tttccacact ataacggaga
     1441 tttaaga
//
LOCUS       DARGEY010000181         1446 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.182, whole genome shotgun sequence.
ACCESSION   DARGEY010000181 DARGEY010000000
VERSION     DARGEY010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1446
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.182"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..848
                     /locus_tag="SF008_001723"
     CDS             <1..848
                     /locus_tag="SF008_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233949.1"
                     /translation="PKYEKLYRIVDDNKHNLRSSLFHNEWGMAAGILGDYKYLANDMF
                     QNGFNARFIQATILYIQLSGGSSILDKPHLLGAVYGYADIAVGSGLVGVHKNPLREQE
                     IKTLAKTLKPDEFGMLPFIDEIMGVDWVIDYNKYRIARDEFGSMYKALRSDIVEGKIK
                     DPRDIDSTYESRREFDHHRGGYYNGMVNGYGTDTPNDWSEERAQLFNDTLILHAKLAA
                     LTPPQGYPNAPYYFTPENLEWYYKRHKLDRLLDPRIPAIYRYNFPQELRAKIRAYAKE
                     HNIKE"
     gene            871..>1446
                     /locus_tag="SF008_001724"
     CDS             871..>1446
                     /locus_tag="SF008_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233950.1"
                     /translation="MQKILQIDLEKRKALENFKNLALLGLGGTMLLNLKEQALDFSQE
                     LTYINTYDKYLNLKLDSFYIPSTLLSLLQLTKKSKEAFYINVLINSDTHYKNPLLQYA
                     ITQEQEQENIVFALKNNENLNASFANLNALKLALEEKNFYLNFIDLNSKESLLSFYNQ
                     IISNNHFRNYFYIKNNQFFIKKDIKNKILFHS"
BASE COUNT          575 a          171 c          223 g          477 t
ORIGIN      
        1 atcctaaata tgaaaaatta tatagaatag tagatgataa taaacataat ctaagatcaa
       61 gtttatttca taatgaatgg ggtatggcag caggaatatt aggtgattat aaatacctag
      121 ctaatgatat gtttcaaaat ggttttaatg caagatttat acaagctact atactttata
      181 tacaactaag tggaggaagt agtatattag ataaacctca tttattaggt gctgtttatg
      241 gttatgcaga tattgctgta ggaagtggtt tagtaggagt gcataaaaat cctttaagag
      301 aacaagagat taaaacctta gctaagactt taaaacctga tgaatttggt atgcttcctt
      361 ttatagatga gattatggga gtagattggg tgattgatta taataaatat agaattgctc
      421 gcgatgaatt tggaagtatg tataaagcct taagaagtga tatagttgag ggcaaaataa
      481 aagatccaag ggatatagat tctacttatg aaagcagaag agaatttgat catcataggg
      541 gagggtatta taatggcatg gtaaatggct atggaacaga tacacctaat gattggagtg
      601 aagaaagagc tcaacttttt aatgatactt taatattaca tgccaaatta gcagccctca
      661 ctcctcctca aggctatcct aatgcacctt attattttac ccctgaaaat ctagaatggt
      721 attataaaag acataagctt gatagacttc ttgatccaag aattcctgct atatatagat
      781 ataattttcc gcaagaactt cgagctaaga taagagctta tgctaaagag cataatataa
      841 aagagtaaac cacaaaagaa aggaaaaaca atgcaaaaaa tacttcaaat cgatttagaa
      901 aaaagaaaag ctttagagaa tttcaaaaat ctagctttat taggattagg tggaacaatg
      961 cttttaaatt taaaagaaca agctttggat tttagtcaag aattaactta tataaatact
     1021 tatgataagt atttaaattt aaagcttgat tctttttata tcccttctac acttttatct
     1081 ttgcttcaat taactaagaa aagcaaagaa gctttttata tcaatgtttt aatcaatagc
     1141 gatacacatt ataaaaatcc tttattacaa tatgctatta cccaagaaca agaacaagaa
     1201 aatatcgttt ttgctttaaa aaataatgaa aatcttaatg cttcttttgc aaatcttaat
     1261 gctttaaaat tagccttaga agaaaagaat ttttatctta attttataga cttaaacagc
     1321 aaagaaagtc ttttaagttt ttataatcaa ataataagca ataatcattt tagaaattat
     1381 ttttatataa aaaataatca attttttatt aaaaaagata taaaaaataa aattttattt
     1441 catagt
//
LOCUS       DARGEY010000182         1421 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.183, whole genome shotgun sequence.
ACCESSION   DARGEY010000182 DARGEY010000000
VERSION     DARGEY010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1421)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1421)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1421
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.183"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            77..>1421
                     /locus_tag="SF008_001725"
     CDS             77..>1421
                     /locus_tag="SF008_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEG8233951.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFAKKRKEITYKDFDLFSKK
                     LASEILKTLGNDNPTQAPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFNIDESLLKNAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNVLKKILFC
                     GEIMPNKQLNIWRKHLPNALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQIGVKGELFVRGTSLSLGYYNDKEKSKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRADNQIKYMGHRIELGEIESVINSHANIKNSACIFKE"
BASE COUNT          521 a          186 c          221 g          493 t
ORIGIN      
        1 tttggtttat gagtatataa aggccttttt tattaattta tcgatattat attacaaaaa
       61 attaaaaagg taaatcatga caactcatat ctatgatttt ttagaaaaaa gtttaatcaa
      121 atttagcgaa aaaactgctt ttgtagaacc ctttgccaaa aaaagaaagg aaatcactta
      181 caaagacttt gatctctttt ctaaaaaact agccagtgaa attttaaaaa ctttaggaaa
      241 tgataatcct actcaagctc ctgttttaat catcttgcct aaagggattg attgtttgat
      301 ttcatttttt ggagtagcac tcagtggaaa tttttataca cttttagatg aaaaaagtcc
      361 taaagaaaga gtagaaaaag ttatagaagt tttaaaacct aaacttttta tcacttcaaa
      421 ggatttaaat tttaatttag atttgcctac gctttataca caagactttg aaagttttaa
      481 tatagatgag agtttgctaa aaaatgctaa agaaaaacat atagatacta atttactcta
      541 tgttttcttt acaagtggga gcacaggcat tcctaaagga gtaagcatag cacataagag
      601 tgtgattgat tatacttttt gggtgtgtga gacttttaaa tttgatgaga atgaaatttt
      661 agccaatcaa gcaccatttt attttgacaa tagcatttta gatatttttt caagtgtaaa
      721 atcaggagca actttacacc ttttacctaa tcatcttttt gcctttccaa ataaaatttt
      781 agaatgtctt gaaaaagaaa aagtaagcac tatattttgg gtaccttcgg tgctgattta
      841 ttttgcaaat actgaagctt tgaataattt tagtttaaac gtcttaaaaa agatactttt
      901 ttgtggtgaa atcatgccca ataaacagct aaatatttgg cgtaaacact tacccaatgc
      961 tttatttgcc aacctttatg gtccaacaga aatcactgat gtatgttctt tttatatcat
     1021 caatcgtact tttaaagatg aagaactttt acctataggc aaagcatgta aaaacacaga
     1081 acttttagtt tttgatgaaa atatgaattt cataagtcct aaacaaatag gtgttaaagg
     1141 ggagcttttt gtgcgtggaa cttctttgtc tttagggtat tataatgaca aagaaaaaag
     1201 caaacaagct tttattcaaa atcctttaca tgataattat ttagatttac tctataaaac
     1261 aggagatatc gtttcttata atgaatttgg agagctttta tgctacggaa gagcagataa
     1321 tcagataaaa tatatgggac acagaataga acttggagaa atagaaagcg tgataaattc
     1381 ccatgcgaat attaaaaata gtgcttgtat ttttaaagaa g
//
LOCUS       DARGEY010000183         1408 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.184, whole genome shotgun sequence.
ACCESSION   DARGEY010000183 DARGEY010000000
VERSION     DARGEY010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1408
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.184"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            8..1144
                     /locus_tag="SF008_001726"
     CDS             8..1144
                     /locus_tag="SF008_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006017955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG8233952.1"
                     /translation="MLSKWNYGNFRIVFWDQEEFHVGNQPAKFSLIFKEKIPFLKLFS
                     DTSLVFAKHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNTEDILSKIAQKQESKNIKS
                     HYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLKEGEKLLDIG
                     CGWGWLSIMAAQKYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQNYQDLEFEN
                     YFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSILAMFEGKTNAWIDKYIF
                     PGGYLPSLREVVSAMSEWDFHLLLAESLRMHYAKTLDLWDENFNEVLDKVREKYDEEF
                     IRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSLTKDYIYK"
     gene            1260..>1408
                     /gene="rpsB"
                     /locus_tag="SF008_001727"
     CDS             1260..>1408
                     /gene="rpsB"
                     /locus_tag="SF008_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEG8233953.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFR"
BASE COUNT          518 a          144 c          267 g          479 t
ORIGIN      
        1 taaatttatt ctttcaaaat ggaattatgg aaattttaga attgtatttt gggatcaaga
       61 agaatttcat gtgggtaatc agcctgctaa attttcttta attttcaaag aaaaaatacc
      121 ttttttaaaa ttatttagtg atacgagttt agtttttgca aaacattata tggagtctaa
      181 actagaaata gaaggtgatt atgatgaaat agctaaagtt ttgtattatt tttcaaataa
      241 gcgtttttta aaaaatacag aggatatctt gagtaaaata gcccaaaaac aggaaagtaa
      301 aaatatcaaa agtcattatg atataggtaa tgatttttat aagctttggc ttgatgatac
      361 tatgagctat tcttgcgctt attttaaaga gcctaataat actctttatg aagctcaaat
      421 taacaaaata gaacatactc ttaaaaaact tgatttaaaa gaaggagaaa agcttttaga
      481 tataggttgt ggctggggtt ggctttctat tatggcggct caaaagtatg gagttaaggt
      541 tgttggaatt actatttcag aggagcagtg taaaaaagct aaggaaagag taaaagaact
      601 tggtcttgaa gataaaatag aaataagact tcaaaattat caagatttag aatttgaaaa
      661 ttattttgat aaagttgttt ctgtgggtat gtttgaacat gtaggcaaag agaatttagg
      721 actttatttc atgaaagtaa aacaagtgtt aaaacctgga ggttctatgc ttttacattc
      781 tattttagcc atgtttgaag gaaaaacaaa tgcttggata gataaatata tttttccagg
      841 aggatattta ccttctttaa gagaggttgt aagtgctatg agtgagtggg attttcatct
      901 tcttttagca gaaagtttaa gaatgcacta tgcaaaaact ttagatttat gggatgaaaa
      961 ttttaacgaa gtattggaca aggtaaggga aaaatatgat gaagaattta taagaatgtg
     1021 ggatttgtac cttcgttctt gtgcctctgc ttttcgtgtt ggaagcgtgg atttgtttca
     1081 atttttaatc acaaaagaaa tcaataataa tctaagtctt accaaggact acatatataa
     1141 gtaaaaacta aacttaaatt tgataaaatc ttagcttcat ttcacacgca tcaatccttt
     1201 ttagcttgtg taaattaagg gatgtggagg aataaagcta aatttataag gagaaactca
     1261 tggttagtat gagagattta ttagaatgcg gtgtgcattt tggacaccaa acaagacgct
     1321 ggaatccaaa gatgaaaaaa ttcatttttg gcgagagaaa aggtatttat gtaattgatt
     1381 tacaaaaaac tttaagatat tttagata
//
LOCUS       DARGEY010000184         1394 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.185, whole genome shotgun sequence.
ACCESSION   DARGEY010000184 DARGEY010000000
VERSION     DARGEY010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1394)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1394)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1394
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.185"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..638
                     /locus_tag="SF008_001728"
     CDS             <1..638
                     /locus_tag="SF008_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8233954.1"
                     /translation="ADESVISAIKTTLLSSSISIVLALLIGFPLGFILGFFDFKFKCF
                     IKLIIDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKALILGQFILALPIVIALF
                     SNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVVALAYGRIVAEVGVAMIV
                     GGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCLNFITHKLKRT"
     gene            640..>1394
                     /locus_tag="SF008_001729"
     CDS             640..>1394
                     /locus_tag="SF008_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8233955.1"
                     /translation="MIEISNLFFNYQNKEVLKIKNLKLDTSKISILMGANGSGKSTFL
                     RILKFLEGDFSKNISYFGNFKLNNKQKREIYLLFPEPILLNRSVRANFLFTLKTYGIK
                     EDIEERIKESLMFLNLDESLLSKHPNELSSGQSQKIAFAIALSVRAKYYLLDEPSAFL
                     DKNTTLLFKKAILKMHENFNTGFLIASHDKHFLDSLAQKKLYLHSGEILEFENTNVFE
                     LENQGVKFCNFIDFSNCKKYKDFKKPPSKIAIDP"
BASE COUNT          496 a          179 c          210 g          509 t
ORIGIN      
        1 atgctgatga aagcgtaatt tcagctataa aaactacact tttaagctca agtatttcta
       61 tagttttagc tttgcttata ggttttcctt tgggatttat cttaggtttt tttgatttta
      121 aattcaaatg ctttataaaa cttatcatag atactagcct ttcttttcca acagttgcag
      181 taggacttat actttatgca ctgatttcaa gtcgaggacc tttgggagaa tttggactac
      241 tttttactat aaaggcttta attttagggc agtttatctt agcacttcct atagtgatcg
      301 cacttttttc aaatttgata gaaaatatga ataaaaaaca ttttttactt ataaaatctt
      361 ttcacctaag tcctttaaaa cttgttttaa cgatgattta tgaattacgc tttgctttga
      421 ttagcgtcgt tgcactagct tatggacgca ttgtagcaga agtaggggta gcgatgatag
      481 taggtggaaa tatcaaatac gacactagaa ccataaccac agctatttca cttgaaacta
      541 acaaaggcga atttgctagc ggtatagctt tggctttggt tttaattctc attgcctttt
      601 gtttaaattt catcacacac aaactcaaaa gaacataaaa tgatagaaat ttctaatctt
      661 tttttcaact atcaaaacaa agaagtttta aaaatcaaaa atttaaaact tgatacgagt
      721 aaaattagca tcttaatggg agcgaatgga agtggaaaat ctacattttt aagaatatta
      781 aaatttttag aaggagattt ttcaaaaaat atttcttatt ttggaaattt taaacttaat
      841 aataaacaaa agcgtgaaat ttatttgctt tttccagagc ctattttgtt aaatcgtagt
      901 gtaagggcaa attttttatt taccttaaaa acttatggga ttaaagaaga tattgaagaa
      961 cgcataaaag aaagtttgat gtttttaaat ttagatgaaa gtcttttaag taaacatcct
     1021 aatgaacttt catcaggaca aagtcaaaaa atagcttttg ctatagcttt aagcgtaaga
     1081 gcgaagtatt atttacttga tgaaccaagt gcttttttgg ataaaaatac tacactttta
     1141 tttaaaaaag ctattcttaa aatgcatgaa aatttcaata caggtttttt aatcgcaagt
     1201 catgataaac attttttaga ttctttggcg caaaaaaaac tttatttgca cagtggagaa
     1261 attttagaat ttgaaaatac taatgttttt gaactagaaa atcaaggtgt gaaattttgt
     1321 aattttatag attttagtaa ttgtaaaaaa tataaagatt ttaaaaaacc tccaagtaaa
     1381 attgctattg atcc
//
LOCUS       DARGEY010000185         1393 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.186, whole genome shotgun sequence.
ACCESSION   DARGEY010000185 DARGEY010000000
VERSION     DARGEY010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1393)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1393)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1393
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.186"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            94..>1393
                     /locus_tag="SF008_001730"
     CDS             94..>1393
                     /locus_tag="SF008_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG8233956.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQILSYYNQISNGALTLENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGVNENEILQKLANTREFQDPTGDFNKTIYYELLNANNLAPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHK
                     EDYKTKKIYEISTYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEV
                     AKDYALMQLKNVANAKFLDLKNGKDNFQKDQNISESDVYYPIDLLNKAKNGDVLRPAP
                     YNNGYIIVKLNKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSLVNFKGDDIG
                     FVSRDSSRESVKVSDKILNDSEFAYFLMNVFNTDQNSSYVV"
BASE COUNT          562 a          149 c          229 g          453 t
ORIGIN      
        1 aaaatgaaaa tatttaacaa aaaaccacta attaaactct aattaaacac ttctgcgata
       61 aaatatgtag tttaattttt atcaaggaat gatatgctta cttggatgca acatcacaaa
      121 aaatatcttg ttgttactat atgggttagt actatagctt ttgttggcgc tggcttttta
      181 ggttggggtg cttatgattt taatctcaat agaagttcga gtgttgcaac tgtaggaaat
      241 gaaaagatag gttttagcga atttgatact agatatagac aaattttaag ttattataat
      301 caaattagca atggtgcttt aactctagaa aatgctgagc aactaggcat taaaaatata
      361 gctttaagct ctcttgttga agataagctt ttgttaaatt ttgccaaaga tttgggtatt
      421 ggtgtaaacg agaatgaaat tttacaaaaa cttgcaaata ctagagaatt tcaagatcct
      481 acaggggatt ttaacaaaac aatttattat gaacttttaa atgccaataa tttagctcca
      541 aaagattatg aaacacaact tgcaaatgaa gtaattaccg ataaacttaa tcaaattttt
      601 aatattccta gcaaagatga ggaattaaaa atgttagctt ctagttattt catgcaagat
      661 gctttaagta ttgcaaaaat tgattatgac aaaaaaaata ttaagattaa cgaagaggat
      721 ttaaaaaagc tttggaatga acataaagaa gattataaaa ctaaaaaaat atatgaaatt
      781 tcaacttatt ttttgccagt tagcaatgag aaaattgacg acaaagaatt agaaaaattt
      841 tataatcaag atgaaaataa actaaaatat aaagattttg caggtaaagt gatggatttt
      901 cagtctgcta aaaatgaagt tgctaaagat tacgccttaa tgcaactaaa gaatgtggct
      961 aatgctaaat ttttagattt aaaaaatggg aaagataatt ttcaaaaaga tcaaaatatt
     1021 agtgaatctg atgtttatta tccaattgat cttttgaata aagctaaaaa tggagatgtt
     1081 ttacggccag caccttataa taacggatat atcatagtta aactaaataa agtagatcct
     1141 ataagaaata aaacttttga agaagctaga gaagaagttt tacctatgta tttaagcgaa
     1201 caagctagaa aaaatttaga agaaaaagct aaaaatagtt tagtaaattt taaaggcgat
     1261 gatataggct ttgtaagtcg agatagttct cgcgagagtg taaaggttag cgataaaata
     1321 ttaaacgatt ctgaatttgc ttatttttta atgaatgtat ttaatactga tcaaaatagt
     1381 tcttatgtgg tca
//
LOCUS       DARGEY010000186         1383 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.187, whole genome shotgun sequence.
ACCESSION   DARGEY010000186 DARGEY010000000
VERSION     DARGEY010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1383
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.187"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..599)
                     /locus_tag="SF008_001731"
     CDS             complement(<1..599)
                     /locus_tag="SF008_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233957.1"
                     /translation="MRLLVLFFLILPLYSVELISFNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYIMLQNKQNINLELS
                     SINDKFGVRIRAIEQGKANIESVPTTTVNNSQELMPKPKSTSLEGYDYTNYILVMLIL
                     VILLIVLWWFKKTMVYKNNNVSRDFTMIFQRFLDKNNQLV"
     gene            complement(600..908)
                     /gene="fliN"
                     /locus_tag="SF008_001732"
     CDS             complement(600..908)
                     /gene="fliN"
                     /locus_tag="SF008_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HEG8233958.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(908..1330)
                     /locus_tag="SF008_001733"
     CDS             complement(908..1330)
                     /locus_tag="SF008_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HEG8233959.1"
                     /translation="MLKILEYSITHFCEHILRLRIEAAQDISGELYGASIPIMGKSEG
                     ECNFYLFFPKEFLKKIAEILINDEKFKEDDWCDLTKECANQIIGYAKNLLNDAKGDDE
                     YKLGIPEYLGKVDFSEIVLDEALTYKFENCYFRIGYCK"
BASE COUNT          493 a          231 c          144 g          515 t
ORIGIN      
        1 acaagttgat tatttttatc taaaaatctt tggaaaatca tagtaaaatc tctagaaaca
       61 ttgttatttt tataaaccat agtcttttta aaccaccaaa gcactattaa caaaataact
      121 aaaattagca ttactaagat ataatttgta taatcatacc cttctaaact tgtacttttt
      181 ggtttaggca ttaattcttg agaattattc acagtagttg taggtacaga ttcgatattt
      241 gcttttcctt gctctatagc tcgtatcctt actccaaatt tatcattgat agagctaagt
      301 tctaaattaa tattttgttt gttttgtagc ataatatagg tattattatt tttagaacta
      361 atactaattt tatctacaag ttgagagtta agttctttta attcatcttt agaatacgtt
      421 aaatcactaa aagttaaaag agttaaattt ttttcttttt tttgagaaat cttgccatta
      481 taggcattat caaaagaaag cattaaatct actcgatcat ttctatcgta gatattaaaa
      541 ctaatcagct caacactata taaaggtaaa attaaaaaaa ataatactag caatctcatt
      601 taaatttctt ttttaaagta ttgaagcaca gtcttagaat ccaaaatttc attaattctt
      661 atagcgagat ttttttcata aaccataacc tcgcctttgc caaaaattct tttattgata
      721 taaagctcaa cgctttctcc agcaggcttt tcaagatcaa taaccgaacc tacttcaagt
      781 tttaaaagct ccgctacact catatttgta gttccaagct cgcttacaaa atctactgta
      841 atatctaaga tatcttcata agattgtaaa agcccatgat gaatgttaaa ctctatatca
      901 tcgctcatta tttgcaatat cctattctaa aataacaatt ttcaaattta taagttaaag
      961 cttcatctaa aactatttca gaaaaatcaa cttttcctaa atattccgga attccgagtt
     1021 tatactcgtc atcacccttg gcatcattta acaaattttt agcataacct ataatctgat
     1081 tggcacattc tttagttaaa tcgcaccagt catcttcttt aaatttttca tcattaatta
     1141 aaatttctgc aatttttttt aaaaattctt ttggaaaaaa taaataaaaa ttacattctc
     1201 cttcgctttt gcccatgata ggaatactcg ctccataaag ttcaccgctt atatcttgag
     1261 ctgcttcaat gcgaagtctt aagatatgct cgcaaaaatg agtgatggaa tactcaagaa
     1321 tctttaacat aactaccacc tttataaaaa acttaattta aaattatagt aaatataaaa
     1381 taa
//
LOCUS       DARGEY010000187         1380 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.188, whole genome shotgun sequence.
ACCESSION   DARGEY010000187 DARGEY010000000
VERSION     DARGEY010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1380)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1380)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1380
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.188"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..899
                     /locus_tag="SF008_001734"
     CDS             <1..899
                     /locus_tag="SF008_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEG8233960.1"
                     /translation="KDENFGKAIILITDLNLNLNQCEEFEKICKEKNIKIFLLDHHQS
                     GEECAQKYSWYLLDSKRCATKIVYDFFSKICTPVLELSKFVDVVNAVDIWLSEDENFE
                     LGKVFLGLIANAKEINRVMFKESQIDYMFFLLDKAWKFIGKENANILLDNATHFIKKD
                     YFARKNDDTLSNLISYFVVEKLSELKENFSIEYEGHKGILTSNIGNTSVIGNDFLVKN
                     PDYDFFIDVSSRKTLSFRANGKIDVSLMAKNLVGGGGHKNASGGLFATFKDGANYNHI
                     KAQIIDLIKSKELKKENNESKQ"
     gene            883..1125
                     /locus_tag="SF008_001735"
     CDS             883..1125
                     /locus_tag="SF008_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233961.1"
                     /translation="MNQNNNKTLKNELEDLQYELSIVLEAMLLYAGVKREKLENAIEA
                     YIDNIDNVLENSNKEGVDEILEVVEFLKNKYKDFFQ"
     gene            1122..>1380
                     /locus_tag="SF008_001736"
     CDS             1122..>1380
                     /locus_tag="SF008_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233962.1"
                     /translation="MKKCILIFFSLYSLSFANIYEKLNDFAYEKKPNKDFKIQEVKLV
                     QFSQENKDCLELLIEAGQVRILNSYNSCQKLSKDESFQKFLN"
BASE COUNT          546 a          134 c          220 g          480 t
ORIGIN      
        1 aaaaagatga aaatttcgga aaagctatta ttctaataac agatttaaat ttaaatttaa
       61 atcaatgtga agaatttgaa aaaatttgca aagagaaaaa tattaaaatt tttcttcttg
      121 atcatcatca aagtggcgaa gaatgtgctc aaaaatattc ttggtattta cttgattcta
      181 aaagatgtgc aactaaaatc gtttatgatt ttttctctaa aatctgcact cctgttttag
      241 aactttcaaa atttgttgat gtggttaatg ctgttgatat ttggctaagc gaggatgaaa
      301 attttgaact tggaaaggtt tttttaggct tgattgccaa tgcaaaagaa ataaatcgcg
      361 tgatgtttaa agaatctcaa atcgattata tgtttttctt gcttgataag gcttggaaat
      421 ttataggaaa agaaaatgcg aatattttac tcgataatgc tactcatttt ataaaaaagg
      481 attattttgc cagaaaaaat gatgatactc tttctaattt aatttcttat tttgtagttg
      541 aaaaactaag tgagctaaaa gaaaatttca gcatagaata tgaaggtcat aaaggcatct
      601 taacttcaaa tataggcaat acttctgtta ttggaaatga ttttttagta aaaaatcctg
      661 attatgactt ttttattgat gttagttcta gaaaaacctt aagttttcgt gcaaatggaa
      721 aaatagatgt aagtttaatg gctaaaaatt tagtaggtgg cggtggacat aaaaatgcta
      781 gtggtggact ttttgcgaca tttaaagatg gagcaaatta taatcatatt aaggctcaaa
      841 ttattgattt aattaaaagc aaagaactta aaaaggaaaa caatgaatca aaacaataat
      901 aaaaccttaa aaaatgaact agaagattta caatatgagc ttagcatagt tttagaagct
      961 atgcttttat acgctggagt taaaagagaa aaattagaaa atgcaataga agcttatatt
     1021 gataatatag ataatgtgct cgaaaattcc aacaaagaag gggttgatga aattttagaa
     1081 gttgtggaat ttctaaaaaa taaatacaaa gatttttttc aatgaaaaag tgtattttaa
     1141 ttttttttag tttatattct ttaagttttg ctaatattta tgaaaaatta aatgattttg
     1201 cttatgaaaa aaaaccgaac aaagatttta agattcaaga agttaaatta gtacaatttt
     1261 cacaagaaaa taaagattgc cttgaacttt taatagaagc tggtcaagtt agaattttaa
     1321 atagctataa ttcttgtcaa aaattatcta aagatgaaag ttttcaaaaa tttcttaatg
//
LOCUS       DARGEY010000188         1364 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.189, whole genome shotgun sequence.
ACCESSION   DARGEY010000188 DARGEY010000000
VERSION     DARGEY010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1364
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.189"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..248
                     /locus_tag="SF008_001737"
     CDS             <1..248
                     /locus_tag="SF008_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8233963.1"
                     /translation="IFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGTLLSESSKVV
                     FIGAWWIILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            245..955
                     /locus_tag="SF008_001738"
     CDS             245..955
                     /locus_tag="SF008_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8233964.1"
                     /translation="MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKKNASKIISILEELKNTTALVCITHDLNLVNSLADEILMLE
                     KNSSNLYSLDEFLRYYNA"
     gene            948..>1364
                     /locus_tag="SF008_001739"
     CDS             948..>1364
                     /locus_tag="SF008_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEG8233965.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNVNFSLNENDNLIILG
                     KSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALN
                     PYKKIKNLIQDGLENFNLQKNDDLILEFFDFFSLKKQ"
BASE COUNT          483 a          141 c          227 g          513 t
ORIGIN      
        1 tgatttttac actttttata tttaatatcg ttcatgctat agccacagaa gctactttga
       61 gtttttttgg actgggttta ggatttgaaa ttccaacttt aggtactctt ttgagtgagt
      121 cttcaaaagt agtttttata ggtgcttggt ggataatact ttttccactt ttaagcttgc
      181 ttttgttgtt tttacctctt ttatggttgg gtaatttttt acaaaaaatt tggggtataa
      241 gatcttgaag gtaagaaatt taaatatcag tttgaagaat aatttattgc ttaaggatat
      301 taatttagat ataaaaacag gcaaaacttt aatgatacta ggacaaagtg gagtgggtaa
      361 aagtttgttg ggaaaagctt tggtaagact tttagattct aatttcacaa taagttttga
      421 tgaattaagt tttcataatt cttgtatttt taattttaac aaagaagagc ttagaaattt
      481 tcgttctaag gtggcacttg ttttgcaaga tgcagagctt agtctttatc cttatttgga
      541 tattggaaat ttatgtcatc ttgttttaaa aactcataca aaattaaaac aaaaagaaag
      601 aaaagattac gctttttctt attttcaaaa attaggattt gaaaatcttg atcgtttgtg
      661 gcattcttat gctaatgaat taagtttggg tatggcaaga agggtgagcc tagctttggc
      721 attattaaat caaccccaaa ttttaatttg tgatgaaatc acagcttctt tggataaaaa
      781 aaacgcttca aagatcatat cgattttaga agaattaaaa aatactacag ccttagtttg
      841 tatcactcat gatttaaatt tggtaaattc tttagcagat gaaattctta tgctagaaaa
      901 aaatagttca aatttatata gcttagatga gtttttaagg tattataatg cttaaagttt
      961 gtaatttaag taagttttat gagcttaaaa agcattggta tttaaaaaaa gaaagacata
     1021 ttatttttga taatgtcaat ttttctttaa atgaaaatga caatttaata attttaggta
     1081 aaagtggtgc aggtaaaagc acattagcta gaattctttg ttttttagaa gatccaagtg
     1141 aaggtgaggt atggtatgaa aatcttaact tgcacaagct tgataaaaac aaacaaagac
     1201 ttttaagaaa gcaaattcag tattgctttc aagatcaaaa aatggcttta aacccttata
     1261 aaaaaatcaa aaatcttata caagatggtt tggaaaattt taatttacaa aagaatgatg
     1321 acttgatttt agaatttttt gattttttta gtctaaaaaa gcaa
//
LOCUS       DARGEY010000189         1344 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.190, whole genome shotgun sequence.
ACCESSION   DARGEY010000189 DARGEY010000000
VERSION     DARGEY010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1344
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.190"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..613)
                     /gene="dccS"
                     /locus_tag="SF008_001740"
     CDS             complement(<1..613)
                     /gene="dccS"
                     /locus_tag="SF008_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HEG8233966.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLTIFFALWYQKLYEELVVLKGATL
                     RENHRNIVISILNSRFTPIDISAKNIAQSTALKFAIFDAKKIVFSNIDFDLRKAKIEL
                     KGRGICDNKVFFLAPMSADHYFLRHASNEEVNTNDGLQILIQGEDVGKDLFWIRTKVF
                     GFAIMAFCILGLISYILVKIALKPLEDKISTLNRFIKDSTHELN"
     gene            complement(606..1271)
                     /gene="dccR"
                     /locus_tag="SF008_001741"
     CDS             complement(606..1271)
                     /gene="dccR"
                     /locus_tag="SF008_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HEG8233967.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAREALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGY
                     CYG"
BASE COUNT          470 a          237 c          145 g          492 t
ORIGIN      
        1 tattgagttc atgagttgaa tctttaataa aacgatttag tgtgctgatt ttatcctcca
       61 aaggctttag agcaattttt actaaaatat aagatattaa acccaatatg caaaaagcca
      121 taatagcaaa accaaaaact ttcgttctaa tccaaaaaag atctttgcca acatcttcac
      181 cctgtattaa aatttgcaaa ccatcgttag tatttacttc ttcattgcta gcatgtctta
      241 aaaaataatg atctgcactc ataggagcaa ggaaaaaaac cttattatca caaatacctc
      301 tacctttaag ctctatcttt gcctttctta aatcaaaatc tatattacta aaaacaatct
      361 ttttagcatc aaatatagca aattttagtg ctgtgctttg agcaatattt tttgcactta
      421 tatctatagg ggtaaaacga gaatttaaga tgcttataac aatgtttcta tgattttctc
      481 tcaaagtggc acccttcaaa acaactaatt cttcatataa tttttgatac cataatgcaa
      541 aaaaaatagt taaaaaaata cctgtagttg ttaggtagat taataaaatt tgcctaatga
      601 cttttttagc catagcaata tcccctgcct ctttgattta taattttttc ttttcctaaa
      661 attttacgta aattttttac ataagctctt aaacttagct cactaggctc ctcatcataa
      721 tcccagagtt cttcaaaaat tctctctgtg cttaaaaagt tgtttttatt tttaagtaat
      781 aaagacaaaa gcttaatttc tttactcggt aaagtcaagg ctttattatt atggtaaaga
      841 atttgtgtag taaattcaaa tctaaatcca tctcctaaat cttcaaaatc ttcattttta
      901 tgtgaaaaag ctcttttaag caaagcttta accctgatag ataactcggc aagttcaaaa
      961 ggttttttta tataatcatc acaacctgcg tcaaagcctt gttttaaatc gtttgttgtg
     1021 tttaaagaag tcatgaaaat tgctggagtt tgctttccgc tttttcttaa ttctttaagt
     1081 aatgaaaatc catctcctaa aggaactttt acatctaaaa tccaaagatc aaaatatctt
     1141 tcataagcca tatctaaagc ttctcgtgca ttatcgcata aaaatacttc atatccttca
     1201 tcgtttaaaa actcttcaat gatctcactc aagctcaaat catcttctaa aagtaaaatt
     1261 ttagcagcca taatttaaat ctttctaact tcaaatctct taaatatata tcattgtatc
     1321 aaaattctta tcaattattt aata
//
LOCUS       DARGEY010000190         1327 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.191, whole genome shotgun sequence.
ACCESSION   DARGEY010000190 DARGEY010000000
VERSION     DARGEY010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1327)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1327)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1327
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.191"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            45..1253
                     /locus_tag="SF008_001742"
     CDS             45..1253
                     /locus_tag="SF008_001742"
                     /inference="COORDINATES: protein motif:HMM:NF012745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG8233968.1"
                     /translation="MCKISVIIPIYNVEKYLDECLKSVINQTYKDLDIILVDDGSTDN
                     SLNIAKEYAKKDERIFLIAKGNGGLSSARNAGLEFIKGTKLRDFFENEENIISYKQSN
                     TFKNSTKELTKEEINKNFTKLSKNIIQTKLKNLNDFIIQDLPDNIIHFLDSDDYLELD
                     CIEKCVNEMSKDDIDICTHNIKEFLEEEQVFRQKAECDIYLNCKYTKNISGIDFFKKN
                     NICEFYFAWQGSFRAKLLNIYKLRFTYGIYHEDHDFGTILFLSAKKITCVKEELLIYR
                     IRANSIIKSEKEKIIPQSIPFYLEPLRYYFDDYSKLRAYFKAYCMCVIGVNILLFCKE
                     SNILDKKTPNKIFLHYIHYYLEQYYPLNYLNINDLFTLVGINLKLFRFKIMLRFYFRH
                     PKKIFKKNNA"
     gene            1246..>1327
                     /locus_tag="SF008_001743"
     CDS             1246..>1327
                     /locus_tag="SF008_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG8233969.1"
                     /translation="MPKISIILPTFNVEKYIAKALESCINQ"
BASE COUNT          539 a          134 c          186 g          468 t
ORIGIN      
        1 ggagtattgg tattgttaag cttaaaattt aataaagaat taatgtgtgt aaaatttccg
       61 tcataatccc aatctataat gtagaaaaat acctagatga gtgtttaaaa agcgttataa
      121 atcaaactta taaagatcta gatattattt tagtagatga tggtagtact gataatagct
      181 taaatatagc taaagaatat gccaaaaaag atgaaagaat ttttcttatt gcaaaaggaa
      241 atggtggctt aagttcagct agaaatgcgg gtttggaatt tataaaaggc actaaattaa
      301 gagatttttt tgaaaatgaa gaaaatatta ttagttataa acaatcaaac acttttaaaa
      361 atagtacaaa agaacttaca aaagaagaaa taaataaaaa ctttacaaaa cttagtaaaa
      421 atataatcca aacaaagctt aaaaatctta atgactttat cattcaagat ttacctgata
      481 atattattca ctttttagat tccgatgatt atttagagct tgattgtatt gaaaaatgcg
      541 taaatgagat gagtaaagat gatatagata tttgcacaca taatattaaa gaattccttg
      601 aagaagagca agtttttaga caaaaagcag agtgcgatat ttatttaaat tgtaaataca
      661 ctaaaaatat cagtgggatt gattttttta aaaaaaataa tatttgtgag ttttattttg
      721 cttggcaagg aagctttaga gcaaagttgt taaatattta taagcttcgt tttacttatg
      781 ggatttatca cgaagatcat gattttggaa ctatattatt cttaagtgct aaaaaaataa
      841 cttgtgttaa agaagaatta ttaatttata gaattcgagc taattctata ataaaaagtg
      901 aaaaagaaaa gataatacca caaagcatac ctttttattt agaaccttta agatattatt
      961 tcgatgatta ttctaagctt agagcttatt ttaaagctta ttgtatgtgt gtaattgggg
     1021 ttaatatttt gcttttttgc aaagaaagta atattttaga caaaaaaact ccaaataaaa
     1081 tatttttaca ttatattcat tattatcttg agcaatacta tcccttaaat tatctcaata
     1141 taaatgattt atttacttta gtgggtatca atttaaaact ttttagattt aaaattatgt
     1201 taagatttta ttttcgccac ccaaaaaaga tttttaagaa aaacaatgcc taaaatttca
     1261 atcatcttgc caacttttaa tgtagaaaag tatatagcca aagctttaga aagttgtatc
     1321 aatcaaa
//
LOCUS       DARGEY010000191         1323 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.192, whole genome shotgun sequence.
ACCESSION   DARGEY010000191 DARGEY010000000
VERSION     DARGEY010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1323)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1323)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1323
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.192"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            135..1199
                     /locus_tag="SF008_001744"
     CDS             135..1199
                     /locus_tag="SF008_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEG8233970.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFALTKGVKNIDELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSEEELKKFLDAIENADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
BASE COUNT          525 a          169 c          191 g          438 t
ORIGIN      
        1 ataaaaatat ttcaatcttt ttgccttgca tataaaaaca aactttttcc taaaaaagct
       61 tttttttact aagttaatac taaaatacct tttctagtta aaaagctaaa attttagatt
      121 taggaaaagt ttttatgaaa taccctttag attgtgaaga aaattttgaa aaatcattct
      181 tattttggtt agcaaaatat gtaaaattta aactcaactc actatctaac aaagagttaa
      241 aaaatccaca agctttagca gaagttaatt ttgctcttac aaaaggtgta aaaaatattg
      301 atgaacttga cgctctagca aaaaaagcaa gaaatgctgg tttaagtgga gttaatactt
      361 attttaatcc tttaaaaaaa gtatttgaat atttaaattt ttataagctt tactctttaa
      421 aacagattga tgaagaactc attgtagaag ttttagcaag tataacaggt gctttatcag
      481 atgcaagcaa aaaaaattac cgtattgctg tgattaattt ttttgatttt ttagacaagc
      541 aaaatgaaga agatgaaaaa gcacatattt tcgatatcaa tcttaaaaac tgggcaggta
      601 tagcaggttc taaaggggta aaattacctg aatttatgag tgaagaagag cttaaaaaat
      661 ttcttgatgc tattgaaaat gcagatttta aaaacaatac catacgcaat aaacttatta
      721 ttaaaatcat catttttaca ggcatacggg taagtgaagc tatcaatatc aaaatgggtg
      781 atattagcga agaaaacgat ctttatatca taagaataag agctaaaggc aataaatatc
      841 gtgttgtaat gataaaaaaa gaacttattt acgatttgct taaaaatgta agtattaatt
      901 atatgagtaa agacgcccta ctttttgtca ataaaaaagg cactccactg actcaatctt
      961 atgttagtcg catagtagaa cagcttttat ttcgtgcagg aattcgcaaa caaaaaaatg
     1021 gtgctcatat gttgcgtcat acttttgcca ccctgcttta taaaaagcaa aaagatttag
     1081 ttttagttca agaagcttta gggcatgcaa gtttaaatac ctcaagaatt tacactcatt
     1141 ttgataatga taaattaaaa cttgccgcac aggttgcaaa ggaattaagt gactcttgaa
     1201 aactatgcta tttttggtaa atatttttac catgatttaa aacacacttt aaaagccttt
     1261 aaccacaaag aaagtaaaaa atgctttaaa tttatagaaa aatataaaaa tgatttttat
     1321 att
//
LOCUS       DARGEY010000192         1312 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.193, whole genome shotgun sequence.
ACCESSION   DARGEY010000192 DARGEY010000000
VERSION     DARGEY010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1312
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.193"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1290)
                     /locus_tag="SF008_001745"
     CDS             complement(<1..1290)
                     /locus_tag="SF008_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8233971.1"
                     /translation="MRKSKFETKEIKILGLSSLGGTLEFYDFIIFVFFAEYIANVFFP
                     KDMSEFWALLNTYGAFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFVLA
                     FIPGYETLGFLAPVLLILIRIFQGIAIGGELPGAWVFVREYCQEKQKAFFLSCLNSAM
                     ALGILLGSIVFLIINAFFSIEEIAAYAWRIAFFVGGIFGIISIYLRRFLQETPVFKQM
                     KKESSLSSFPLKDLFKEKDIVKNLFSSMMMTWVLTGCVIVLVLLMPKFMPSILNLSGV
                     EGSYLQILGILGIALGGVFMGYLVDKFGLFKICIFFSLAFVFFSFLYFYALYELKNLV
                     LVCILYSIVCFLGGINVFAPILMSEVFRAKIRFSGISFSYNIAYAISGGITPQLVFWL
                     NTLASKNDNPFLYGMSIYMIFLALLAICAVFIVKDKIK"
BASE COUNT          567 a          240 c          130 g          375 t
ORIGIN      
        1 ttttatttta tcttttacta taaaaacagc acaaatagcc aataacgcta aaaaaatcat
       61 atatatactc ataccatata aaaatggatt gtcattttta ctcgcaagtg tattaagcca
      121 aaaaacgagt tgcggagtaa taccgcctga aattgcataa gcaatattat aagaaaaaga
      181 aattcctgaa aatcttattt tagctctaaa aacttcactc attaaaatag gtgcgaacac
      241 attaattcca cctaaaaaac aaacaatcga atacaaaata cacaccaaaa ccaaattttt
      301 aagctcatat aaagcataaa aatataaaaa agaaaaaaat acaaaagcta aagaaaagaa
      361 aatgcaaatt ttaaataaac caaatttatc tacaagataa cccataaaaa ccccgcctaa
      421 agctattccc aaaattccta atatctgtaa ataacttcct tcaactccac ttaaatttaa
      481 aatactgggc ataaatttag gcattaataa aacaagcaca ataacacaac ctgttaaaac
      541 ccaagtcatc atcattgatg aaaataaatt ttttacaata tccttttctt taaataaatc
      601 tttaagtgga aaagaactaa gcgatgattc ttttttcatt tgtttaaaaa caggagtttc
      661 ttgcaaaaat ctacgcaaat aaatagaaat aatcccaaaa attccaccta caaaaaaagc
      721 aatacgccat gcataagcag caatttcttc tatgctaaaa aaagcattaa tgattagaaa
      781 tactatactt cctaacaaaa ttcctaaagc catagctgaa tttaaacagc ttaaaaagaa
      841 agctttttgt ttttcttgac aatactctct tacaaaaacc caagctccag gcaattctcc
      901 acctatagct atgccttgaa aaattcttat aagtatcaat aaaacaggag ctaaaaaccc
      961 aagagtttca taacctggaa taaaagctaa gacaaaggta ggaagaacca ttagtaaaat
     1021 acttagcata aacatatttt tacgcccaaa tttatctcca aaatgtgcca taactatacc
     1081 acctaaagga cgtgctaaat atccagctgc aaatgctcca taagtattta ataaagccca
     1141 aaattcactc atatctttag gaaaaaatac attagctata tattcagcaa aaaagacaaa
     1201 aataataaaa tcataaaatt ctaaagttcc tcctagtgaa gaaagtccta agatcttaat
     1261 ttcctttgtt tcaaattttg attttctcat tgattaatta ccttaaattt ta
//
LOCUS       DARGEY010000193         1276 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.194, whole genome shotgun sequence.
ACCESSION   DARGEY010000193 DARGEY010000000
VERSION     DARGEY010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1276
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.194"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..460)
                     /locus_tag="SF008_001746"
     CDS             complement(<1..460)
                     /locus_tag="SF008_001746"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233972.1"
                     /translation="MNKNNNCVIKVSKDDKIILEYIKSETNASYSKIISILLKKFNSC
                     DTDEKNKINDEISKNKFYTSDENKIIKLKLTENEVNILKEISKNTGFSSITKQAKFLL
                     LNSIKNEKLFTNIEIDKFIKTRTEINAIGKNIYQLLKILRSGNSVKINENN"
     gene            654..935
                     /locus_tag="SF008_001747"
     CDS             654..935
                     /locus_tag="SF008_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233973.1"
                     /translation="MFKESKLIEELKREYDEKLKKLRQKEKENKERIYKKFSSALFKD
                     FEINEDFKNEFNLLVEKFDCKNTKNILDKINNLYDFNHRNDKIDTAKKQ"
     gene            964..>1276
                     /locus_tag="SF008_001748"
     CDS             964..>1276
                     /locus_tag="SF008_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTPase"
                     /protein_id="HEG8233974.1"
                     /translation="MEKDYKIKVTDVSELNEQYKEAIQEGTYEGEDVNKFFNTIKTFD
                     VAESLLKKDFSNQYIKFDIITDKEKIPLNIRLGDKNFQKGIEHLINIGSSKLIKENIN
                     PE"
BASE COUNT          523 a          121 c          141 g          491 t
ORIGIN      
        1 aattattttc attaattttg acagaatttc cacttctaag aatcttcaat aattgatata
       61 tatttttacc tattgcattg atttctgttc ttgtttttat aaacttatct atttctatat
      121 tagtaaaaag tttttcattt tttatggagt ttaatagcaa aaattttgct tgttttgtaa
      181 tacttgaaaa tcctgtattt ttagaaattt cttttaaaat atttacttca ttttctgtaa
      241 gttttagttt gattatttta ttttcatcac ttgtataaaa tttattttta gatatctcat
      301 cattgatttt attcttctca tctgtatcac aagaattaaa cttttttaat aaaatagata
      361 ttattttact atatgatgca tttgtttctg attttatata ttctaaaatt attttatcat
      421 ctttgctaac ttttatgacg caattattgt ttttattcat ttacacttcc ttaatgagcc
      481 tcgcagagtt tttgcctttt attttttaaa aaggtaactt tttaggaaat aaaaggctat
      541 cctgcaatta ttaaattatt tcgattaatc gctattctac attattaagc tttataaaat
      601 attaagacta ctttgtaata atacatttac ataaatatta taaaggagat gttatgttta
      661 aagaaagcaa attgatagaa gaattaaagc gtgagtatga tgaaaaatta aaaaaattac
      721 gccaaaaaga aaaagaaaat aaagagcgta tatataaaaa attttcatca gcactattta
      781 aagattttga aataaatgaa gattttaaaa atgaatttaa tttattggta gaaaagtttg
      841 attgtaaaaa cactaaaaat atattagata aaataaataa cttatatgat tttaatcata
      901 gaaacgataa aatagatact gcaaaaaaac aataaaacaa aaatttatca taggagaata
      961 aaaatggaaa aagattacaa aataaaagta acagatgtaa gtgaacttaa tgagcaatat
     1021 aaagaagcta tacaagaagg aacttatgaa ggtgaagatg taaataaatt ttttaataca
     1081 ataaaaactt ttgatgttgc agaaagctta ctaaaaaaag atttttcaaa tcaatatatt
     1141 aaatttgata tcattactga taaagaaaaa ataccattaa atataagact tggagataaa
     1201 aattttcaaa aaggtattga acatttaatt aatattggta gttccaaatt aattaaagaa
     1261 aatataaacc ctgaaa
//
LOCUS       DARGEY010000194         1267 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.195, whole genome shotgun sequence.
ACCESSION   DARGEY010000194 DARGEY010000000
VERSION     DARGEY010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1267)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1267)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1267
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.195"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            3..896
                     /gene="msrP"
                     /locus_tag="SF008_001749"
     CDS             3..896
                     /gene="msrP"
                     /locus_tag="SF008_001749"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HEG8233975.1"
                     /translation="MLITPEKLYKQRRNFLKLGAGALISSSVLASKLSALNFTSDTNP
                     NKLEISDEELATNYVNFYEFSTDKRKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDI
                     LKFPLEERIYRFRCVETWSMVVPWVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPD
                     QDALFPTIDYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSI
                     KSIVKIEFTKEQPKSTWESYAPSEYGFYANVNPNVSHPRWSQANERALGDFFTKPTLM
                     FNGYEKEVASLYKNMDLKVNF"
     gene            896..>1267
                     /locus_tag="SF008_001750"
     CDS             896..>1267
                     /locus_tag="SF008_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric reductase-like transmembrane
                     domain-containing protein"
                     /protein_id="HEG8233976.1"
                     /translation="MQTKYFKFLAYFSFIISLIYGFYHIIKAFDFVKEAYIYTGIFAL
                     IFLNLSLLFSLLKFKKTKNYPKILGIFAAFWAILHFLNYFIFDRNAQILRLFNDISHR
                     LLEASGFIAFLIIFLMLLSSFK"
BASE COUNT          429 a          190 c          198 g          450 t
ORIGIN      
        1 ttatgcttat aacacctgaa aaactttata aacaaaggag aaatttttta aaacttggag
       61 cgggtgcttt aataagttca agcgtgcttg cttctaaact atctgcttta aatttcacaa
      121 gcgatactaa tccaaacaaa cttgaaatca gcgatgaaga actggctaca aattatgtca
      181 atttttatga attttcaaca gataaaagaa aggctgtatc attggcacaa aatttcaata
      241 ctcaaaattg gaaaatcgat atcagtggag aaatagaaaa acctttaact ttaagcatgg
      301 aagatatttt aaaatttcca ctagaagaaa gaatttatcg ttttcgctgt gttgaaactt
      361 ggtctatggt ggtaccttgg gtaggctttg aattgcgtcg tttgattgaa atggcaaaac
      421 ctacaagcga ggcaaaattt gttaaattta ccactctttt agataagagc caatttcccg
      481 atcaagacgc tttatttcca actatagact atccttatgt agaaggactt cgcatggatg
      541 aagctatgca tcctcttacc ttgcttgcag taggaatgta taaaaaagcc ttaaagcctc
      601 aaaatggcgc tccaatacgc cttgttgttc cttggaaata tggctttaaa agtattaaat
      661 ccatagttaa aatagaattt accaaagaac agcctaaatc cacttgggaa agttacgctc
      721 caagtgaata tggtttttat gctaatgtca atcctaatgt ttctcatcct agatggtctc
      781 aagctaacga gagggcttta ggagacttct ttaccaaacc tactttaatg tttaatggat
      841 atgaaaaaga agtggcaagt ttatataaaa acatggactt gaaagtgaat ttttaatgca
      901 gacaaaatac tttaaatttc ttgcttattt tagctttatc ataagtttaa tctatggctt
      961 ttatcatatc ataaaagcct ttgattttgt aaaagaagcc tatatttaca ctggaatatt
     1021 tgctttaatc tttttaaatt taagtctttt attttcttta cttaaattta aaaaaacaaa
     1081 aaattatcct aaaattttag gtatttttgc agctttttgg gcgattttgc actttttaaa
     1141 ttattttatt tttgatagaa atgctcaaat tttaaggctt ttcaatgata tttcacatcg
     1201 tttattagaa gcaagtggat ttatcgcatt tttaatcata tttttaatgc ttttaagttc
     1261 ttttaaa
//
LOCUS       DARGEY010000195         1266 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.196, whole genome shotgun sequence.
ACCESSION   DARGEY010000195 DARGEY010000000
VERSION     DARGEY010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1266
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.196"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..225
                     /locus_tag="SF008_001751"
     CDS             <1..225
                     /locus_tag="SF008_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233977.1"
                     /translation="DDLKPNVKEKIHFFAMFFTLFKLMAYVILVAGFLFLHRQDKLDI
                     FAYICGISSLLVCVFIFILYIKKYESKKNY"
     gene            203..>1266
                     /locus_tag="SF008_001752"
     CDS             203..>1266
                     /locus_tag="SF008_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8233978.1"
                     /translation="MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLA
                     VGVVSSCFFIGALVGTISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAVL
                     RFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
                     VFILSATLILLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMTSLFILLQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFI
                     TMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSKNKGVELGRGVLFCY
                     SLGSLFGPLILGFLMQYFEI"
BASE COUNT          355 a          166 c          212 g          533 t
ORIGIN      
        1 gacgatttaa agccaaatgt taaagagaaa atccattttt ttgctatgtt ttttactctc
       61 tttaaattga tggcttatgt aatattggtt gctggatttt tatttttaca tcgccaagat
      121 aaattagata tctttgctta tatttgtgga atttcatcct tgctagtttg tgtgtttatt
      181 tttattttat atataaaaaa gtatgagtcc aaaaaaaatt attaaatcaa tgacagcact
      241 ttttgctggt atggcatttt tatttgcagg taatgccttg atagtaagct ctataggtgt
      301 tatattaaaa gaaaacggag aaagttcttt agctgttgga gtggtaagtt cttgtttttt
      361 tataggcgct cttgttggaa ccatcagtgc tcataaaatt atttctcgta taggtcatat
      421 acgctctttt gggctatttg gtgctatttt tggaatttca gctatgcttc atacagtaag
      481 cgaaaatctt attttttggg ctgttttaag atttttcata ggaatttgct actatggact
      541 tttaatggtc atagaatcat ggcttaatga aaaaagcaaa aatgccattc gatctagaat
      601 tttaggtttt tatgaaattg ttttttatct tgcgtttggt attggagttt taatcatagc
      661 gttaaattta agcaaacata gtgtatttat cctcagtgca actttaattt tactttcatc
      721 tttaccttta aatctaatta aaatcaaaga acctgtttta cccgcatcaa gtcctatttc
      781 tatacctaaa atttttgata tagctccttt agctatcgtc acaagcttta tagccggaat
      841 gcttataaat ggcttttttt ctatgacatc tttatttata cttttgcaag gttttgatac
      901 aaaagcggtt tcttatttta tattttgtgg ggttttaggt ggttttattg cacaaaccat
      961 cataggaact atttcagaca aacttggtcg caaatttgcc attatcactt gtgcaagtat
     1021 aggatttatc actatgctta tatttatctt ttttaaactt catttatata tgcaatattt
     1081 tttaggaatt actcttggta taggaatatt ttgcttatat gctttagcac ttgctagagc
     1141 aaatgatgtt ttagtaagca aaaataaagg tgtagagtta ggtcgtgggg ttcttttttg
     1201 ttattctttg ggctctttgt ttggcccttt aattttaggt tttttaatgc aatattttga
     1261 aatcaa
//
LOCUS       DARGEY010000196         1259 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.197, whole genome shotgun sequence.
ACCESSION   DARGEY010000196 DARGEY010000000
VERSION     DARGEY010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1259
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.197"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            397..>1259
                     /locus_tag="SF008_001753"
     CDS             397..>1259
                     /locus_tag="SF008_001753"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233979.1"
                     /translation="MEALNQKNSLNIRLLSSNNILLHNQEFKLYEIAQGNKNEIKTIF
                     TTNRMGEAHLNASEIFSKEAQSFELILNQSSVYKNKPIYNHRFLLRSYEYGHWCEIKF
                     ERKADKGSINSIRLKSKEFTLENNEKIVRNFYTFGDIVEFEAIYEDTKIKEEQIKWGY
                     VFIQDKNTLDKLNKNQLTNDKKESSLFDEEILKDCFYIEKEEDKALLSSSIIYRHLEN
                     NKAYCGKHLSLQLPNPKDTQEQKTLLVFAYKEIPNYNASYLIRINDYPQITIDCTLAE
                     TLRAHTNKDEIS"
BASE COUNT          523 a          169 c          196 g          371 t
ORIGIN      
        1 gtgctaatca aaacactatt atccataagg atgagataag aaatgtgaag ggagaaaata
       61 aattattaat agaaaagtct ttaacccaaa caatagaaaa agaatttttc cttaatattc
      121 atcaaaattt atccgcccac atacaagata atacatcctt aaagtccaat tccatgcaga
      181 caaaggtaga ggaacaatat tctttagaat cagataattc aacttttgac tttcaaacag
      241 attgtgaagt aaaacaggca gtcaaatcct ccatcaagta ggtgatactc aaattgttac
      301 taagggagat tgtgttataa ttaaagcagg tggagttgaa gtaattatag attctaatgg
      361 gcttgtagtt agaggtggag agcttaggac agagtaatgg aagcacttaa tcaaaaaaat
      421 agtttaaata ttaggctttt aagttctaat aatattcttc tgcataatca agaatttaag
      481 ctttatgaaa tagcacaggg caataaaaat gaaatcaaga ctatttttac aaccaataga
      541 atgggggaag ctcatttaaa tgctagtgaa atttttagta aagaagcaca aagctttgaa
      601 ttaattttaa accaatctag tgtttataaa aacaaaccca tctataatca tagattttta
      661 ttaagaagtt atgagtatgg gcattggtgt gaaataaaat ttgaaagaaa ggcagataaa
      721 ggctctataa actctattag gctaaaatcc aaagaattta ccttagaaaa taatgaaaaa
      781 atagtgcgta atttctatac ttttggcgat atagtagaat ttgaagctat ttatgaggat
      841 acaaaaatca aagaagagca aattaaatgg ggttatgttt ttattcagga taaaaacacc
      901 ttagataagt taaacaaaaa ccaattaact aatgacaaaa aggaaagttc tttatttgat
      961 gaagaaattt taaaagattg tttttatatt gaaaaagaag aagataaagc cctattatct
     1021 tcttctatca tttatagaca tttagaaaac aacaaagctt attgtggaaa acatcttagt
     1081 ttgcaactac caaaccctaa agacacacaa gagcaaaaaa cactattagt ctttgcttat
     1141 aaagaaatac ccaattataa tgcctcttat cttataagaa ttaatgatta tccacaaatt
     1201 accattgatt gcactctagc agaaacacta agggcacata caaacaaaga tgaaatctc
//
LOCUS       DARGEY010000197         1162 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.198, whole genome shotgun sequence.
ACCESSION   DARGEY010000197 DARGEY010000000
VERSION     DARGEY010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.198"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            264..608
                     /locus_tag="SF008_001754"
     CDS             264..608
                     /locus_tag="SF008_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233980.1"
                     /translation="MLTEKIDPKEQIQKEDIKKSKTLIIHLNSYLEAENNLQKIKILV
                     KIYQNLQKCSRTPDLIDIEELEFNKEDIFEELFYALGGLGGIYSVEMIQSRIANFIKI
                     LGGEPKLLLEQF"
     gene            complement(659..>1162)
                     /locus_tag="SF008_001755"
     CDS             complement(659..>1162)
                     /locus_tag="SF008_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEG8233981.1"
                     /translation="RKSKKEVYNSFRNSLLIKLMLYGGLRISEALNVKLCDFEEVDDE
                     ILKISIIGKGGKEQFAFIKKEEVDDELEYFKENIQDSDYIMQTSTGKHLNRSNAFLIV
                     NNIYAKALISKKGLHLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTI
                     KAALLNN"
BASE COUNT          443 a          167 c          139 g          413 t
ORIGIN      
        1 catatacttt ttaacatagg aatattaaaa atgattattg ttaatgataa gcaacttaaa
       61 actttaattg taaaaaaaga acatatatta aagatgcata cacaaaaaat ctctacatcg
      121 aagcaaaaga ttcgctaaaa ggtactatta tctttttttt tattttagat ataggttaaa
      181 aaaaaataca aagtattaaa ataggaaaat acccaacaac cacactgtca agcgcaagag
      241 aaaaagcaaa tatttttaat aatatgttaa ctgaaaaaat tgatcccaag gaacaaattc
      301 aaaaagaaga tataaaaaaa tcaaaaaccc taataataca cttaaattct tatttagagg
      361 ctgaaaataa tctacaaaaa atcaagattt tagtcaaaat atatcaaaat ttacaaaaat
      421 gtagccgaac tcctgatctt attgatatag aagaacttga atttaacaaa gaagacattt
      481 tcgaagaatt attttatgct ttaggcggtt taggaggtat atattccgta gaaatgatac
      541 aatctagaat tgcaaatttc atcaaaatac ttggcggaga acctaaactt ttattagaac
      601 aattttaaac acatagactt cttcttgaag tctatgcaaa tactcaattt tagaaaaatt
      661 aattattcaa taacgcagct tttattgtat catttgttgc tttggcatat atagtagtag
      721 tatttagatt tgcatgtctt agaatttttt gtatgaccac aaggtttgtt cctttggctg
      781 ttaatctcat ggctaaagtg tgtctaagca aatgaagtcc ttttttgctg atcaaagctt
      841 tagcgtaaat attatttaca atcaaaaaag cattacttct atttaaatgt tttcctgtgc
      901 tagtttgcat tatgtaatca ctatcttgga tattttcttt aaaatattca agctcatcat
      961 ctacttcttc ttttttaata aatgcaaatt gttctttacc gcccttgcct attatggata
     1021 tttttaatat ttcatcatca acctcttcaa aatcacaaag ttttacattt aaagcttcag
     1081 aaattctaag tcctccataa agcataagtt ttatcagtaa agagtttcta aaactattat
     1141 aaacttcttt tttgcttttt ct
//
LOCUS       DARGEY010000198         1145 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.199, whole genome shotgun sequence.
ACCESSION   DARGEY010000198 DARGEY010000000
VERSION     DARGEY010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1145)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1145)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1145
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.199"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..528
                     /locus_tag="SF008_001756"
     CDS             <1..528
                     /locus_tag="SF008_001756"
                     /inference="COORDINATES: protein motif:HMM:NF012744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEG8233982.1"
                     /translation="KKILSIRPFTSRKYANDLSIKAILELSKREFFKELEFFIAGDGV
                     LFDELTNNLKSFKNITLYKGFLTQKEISNLHKKYGIFLNPTRMDAQGVSRDEAMSSGL
                     VPITNNIAAIPEFIDGECGILVAPENAKLLADAIEFLYKNPNEFMKLSINAANRVRNQ
                     CDKNTIISKELDIIL"
     gene            582..770
                     /locus_tag="SF008_001757"
     CDS             582..770
                     /locus_tag="SF008_001757"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233983.1"
                     /translation="MKNNFELIDYYARSSFASLASSAMIEQSVLDNIQSSFQKRMVLR
                     DMDKSFIRKLKKMILIVY"
     gene            927..>1145
                     /locus_tag="SF008_001758"
     CDS             927..>1145
                     /locus_tag="SF008_001758"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233984.1"
                     /translation="MKNIYDLYMIQDKIVLNKVYWSDVFYNGNKFSISQEELISNNNF
                     LKERYDDFVNFFPKIKCIEYFKDILVLDH"
BASE COUNT          436 a          101 c          188 g          420 t
ORIGIN      
        1 aaaaaaattc tttctatccg tcctttcacc tctagaaaat atgcgaatga tttaagcatc
       61 aaggctattt tggagcttag taagagagaa ttttttaaag aattagaatt ttttatagcc
      121 ggtgatgggg tattatttga tgaattaact aataatttaa aatcttttaa aaatattact
      181 ttgtataaag gatttttaac ccaaaaagaa atatcaaatt tacataaaaa gtatggtata
      241 tttttaaatc ctacaagaat ggatgctcaa ggtgtctcta gagatgaggc tatgtcaagt
      301 ggtttggttc cgatcactaa caacattgca gcaatcccag aatttataga cggtgaatgt
      361 ggaattttag ttgctccaga aaatgcaaag ttgttagctg atgcaattga atttttatat
      421 aaaaatccaa atgaatttat gaaattatct atcaatgctg caaatagagt aagaaatcaa
      481 tgtgataaaa atacgattat atctaaagaa ttggatataa tattatgaaa aaaatttgta
      541 tttttggatc gtgtgttagt agggatataa ttgaatatga tatgaaaaat aattttgaat
      601 taatcgatta ttatgctaga agttcatttg cttctttggc ttcaagtgct atgatagagc
      661 agagtgttct tgataatata cagtcatctt ttcaaaaacg catggtgtta cgtgatatgg
      721 ataaatcttt tataagaaag ttaaaaaaaa tgattttgat tgtttattga tcgattttat
      781 tgatgataga tttcattttt ataaaatatt aaaaaatagc atagttacag tctcaaatga
      841 gtataaaaaa gcaaaaggaa agttatatag ttccaatatg atttattcta agagtcaaga
      901 gcatattgat ttgtggagga aaggtattga aaaatatata tgatttatat atgattcaag
      961 ataaaattgt tttaaataag gtatattggt cagatgtttt ttataatgga aataaatttt
     1021 caattagtca agaagaattg attagcaata ataatttttt aaaagaacga tatgatgatt
     1081 ttgttaattt ttttcctaaa attaaatgta tagagtattt taaagatata ttagttttag
     1141 atcat
//
LOCUS       DARGEY010000199         1130 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.200, whole genome shotgun sequence.
ACCESSION   DARGEY010000199 DARGEY010000000
VERSION     DARGEY010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1130
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.200"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            109..912
                     /locus_tag="SF008_001759"
                     /pseudo
     CDS             109..912
                     /locus_tag="SF008_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935935.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            920..>1130
                     /locus_tag="SF008_001760"
     CDS             920..>1130
                     /locus_tag="SF008_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233985.1"
                     /translation="MIGKDFLYSIHKDKKSIYLFCENKSIIDCQSIYDELYKLEATTD
                     FTFEELQNYQAYIFLNSTLLTGSNEL"
BASE COUNT          453 a          138 c          148 g          391 t
ORIGIN      
        1 tttaatgccc ctagtgttta tggttggaat tttcctaata tagctatcaa ccctaatact
       61 ataaaaatta tgcaagatct tttaggaaaa tacactatag atgtttcaga aaaaatcact
      121 catatttatg ataatggtaa aattgaaatc attgcttcag ctcaatatgg tgcaagcaat
      181 gctttaggta tatatacagg gaaaaatgat cactctataa aacctcttgt taatactctc
      241 tatttttatt cctatctttt agaattagat gctaactata acaaagtcaa agataaaagc
      301 cttagtgagt gtatagagta tcttaatcat tttatgaaaa atattcaaat ttatacagaa
      361 acttttgtgt taaaaaataa tgctattaat aataaaaatt tcgctcttaa aaatggacct
      421 cttggacttt ttagaagttc tccagaaaaa atcaatcatt ttgaatattt tctttcatta
      481 atagccacca taatgcaaga aacaaatggt attttagaag agcttggaga taattattat
      541 gcaagctata aagctcctac cattagtcaa acaaaaatca tagattttat tttaaaggcg
      601 caaaaaaaag aaaaatacat tttaattctt gataaaaatg attttaataa atacagaaaa
      661 gattgttcct ttattaataa tcaagaaaac ttagctcata aaattgccat tggggaattt
      721 agaattttta ttgtggttta taaagatatg aaatgtcttg aaaatattaa taatataaca
      781 aaaatatacg gatataattc aaaaagttat aaaataaaag atcaaatttg ggatgagcaa
      841 tatttaggtg gagtttgtaa aatatcacaa gctttgtatt ttaatggaaa agctaaaata
      901 ggtattattt aggaaaatta tgataggtaa agacttttta tattctattc ataaagataa
      961 aaaaagtatt tatttgtttt gtgaaaataa aagcataatt gattgtcaaa gtatttatga
     1021 tgaactttat aaattagaag caacgacaga ttttactttt gaagaactcc aaaactatca
     1081 agcttatatc ttcctaaact ccactctcct tacaggctca aatgaacttc
//
LOCUS       DARGEY010000200         1082 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.201, whole genome shotgun sequence.
ACCESSION   DARGEY010000200 DARGEY010000000
VERSION     DARGEY010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1082)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1082)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.201"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>1082)
                     /locus_tag="SF008_001761"
     CDS             complement(<1..>1082)
                     /locus_tag="SF008_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEG8233986.1"
                     /translation="QDFIKVVDFIPYDEIIPHYSELNLNKTIKIDPVVKRKYPFGKLA
                     SHIIGYVGKANLQDVQENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYKVNALNQEV
                     EQLSYTPAMSNDIELTIDIELQSYLTSLFEGNAGAAIIMNVNDGSILAAGSFPEYDLN
                     PFVTGISFKDWDELSNSLDHPFTNKLINGYYPPGSVVKMGVGLSFLNSKNISPSTHYV
                     CNGSIELGGRFFRCWNRSGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQISETLSRIGF
                     GAKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAIGQGNFLATPMQIARYTAQ
                     IAKGGEVIPHFLKSIENNNTTIENQM"
BASE COUNT          353 a          212 c          142 g          375 t
ORIGIN      
        1 catttgattt tctatagttg tattattatt ttctatgctt tttaaaaaat gaggtataac
       61 ctctccacct tttgcgattt gagccgtata tctagcaatt tgcataggtg ttgcaagaaa
      121 attaccttga cctatagctg tatttaaagt atcaccttga aaccaagatt gtctatatct
      181 ttgcatcttc cattctttgc ttggtaaagt tcctacaaat tcactaggta aatctacccc
      241 tgttttcgct ccaaagccaa tgcgagataa agtttcactt atttgatcga ttccaacttg
      301 caaactgcca ttataaaaat aaacatcaca actatatttt atcgcatgtt ttaaatccac
      361 aggtccatgg cctgatcgat tccaacatct aaaaaacctg cctccaagct caatgcttcc
      421 attgcaaaca taatgagtcg acgggctaat atttttagaa tttaaaaaag aaagccctac
      481 tcccattttt acaacagaac ctggaggata atatccattt ataagtttat ttgtaaaagg
      541 atgatcaaga ctatttgaaa gctcatccca atccttaaaa gaaatccctg ttacaaaagg
      601 attaagatca tattcaggga aactccctgc agctaaaata gatccatcat ttacattcat
      661 aattatagca gctccagcat tcccttcaaa caatgaagtt aaataagact gaagctctat
      721 atctatcgta agttctatat cattagacat agcaggagtg taagaaagct gttctacttc
      781 ttgatttaag gcattaacct tataaaccct agttcctttt tctccttgta aaatatcatt
      841 ataatagcgt tctataccgc tttttcccgt atagttagaa agttttgcta tttcattttc
      901 ttgaacatct tgcaaatttg ccttacctac atacccaata atatgcgaag ccaattttcc
      961 aaaaggatat tttcttttta caacaggatc tatttttatt gttttattaa gatttaactc
     1021 tgaataatgc ggaataatct catcgtaggg tataaaatct acaactttaa taaaatcttg
     1081 at
//
LOCUS       DARGEY010000201         1037 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.202, whole genome shotgun sequence.
ACCESSION   DARGEY010000201 DARGEY010000000
VERSION     DARGEY010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1037)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.202"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            195..>1037
                     /locus_tag="SF008_001762"
     CDS             195..>1037
                     /locus_tag="SF008_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HEG8233987.1"
                     /translation="MLKRLALLIALSSLVLHASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAKVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNAYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPN"
BASE COUNT          399 a          121 c          170 g          347 t
ORIGIN      
        1 cctaaaaaag acattcctat aaaaaaattt cttatcatta tagacaacct tttaaaacaa
       61 gcctttatga tttgtaaaaa ttatatcata aataaggctg cattgttaat ataattaata
      121 ttttttaaga aaaaaaatat tataatcaca aacatttttg acttaaaaaa atttgaaata
      181 cctaaggaaa aacattgtta aaacgacttg ctttattaat tgcactttct tcattggtgt
      241 tgcatgcctc agatcttgtt aaaatttatc ttaatcaagg attagatgct gttggtgtag
      301 cgattgaaaa agaattaact caaaaggatt tttggttaag tgaaatagga gataaaaata
      361 tttcacttgg atactatgat gataatgttg ctatcgtgct tacaaataaa acagataaaa
      421 ttctccgtgt ttattcttac gaggacggaa aaataagaaa agattttgaa caaaaagaaa
      481 taataactgg attaatgggt gataaaaaaa tagaaggaga tttgaaaacg ccagtaggtt
      541 tttatgagtt aggccgtaag tttaatccag gtgatcctta ttatggtccc tttgcttttg
      601 ccacaactta tccaaattta cttgataaag tacaaggaaa aacaggtggt ggtatttgga
      661 tccatggcta tcctttagat ggttctagac ttgatgaatt taaaacaaga gggtgtattg
      721 ctttatttaa taataatttg gagaaatttg caaaagttgt gcaagataaa aaagtttttg
      781 ttatgacaga agaaaaagaa aaaattagag ctaaaaagga tcaaatcgct agtttattgg
      841 ctgatctttt tacatggaaa ctagcttgga caaatagtga cactaatgcc tatttaagtt
      901 tttatgatga gcaagaattt aaacgttttg ataaaatgaa atttgaacag tttgcttcca
      961 tgaaaaaatc tattttttct cgtaaagaag ataaaaagat taaattttca gatattaata
     1021 tcagccctta tccgaat
//
LOCUS       DARGEY010000202         1028 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.203, whole genome shotgun sequence.
ACCESSION   DARGEY010000202 DARGEY010000000
VERSION     DARGEY010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1028)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1028)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1028
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.203"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..722)
                     /locus_tag="SF008_001763"
     CDS             complement(<1..722)
                     /locus_tag="SF008_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8233988.1"
                     /translation="MKNLNKASNAQIILVFCLGVFGILSTELGMMGIIPIVSQNFSVS
                     ISDAGWCVSIFALVITFCSPIVPLLCANFNPKKLMLICLAVFILSSLTSAFVGEFWQL
                     LILRAIPAFFHPIYIALALSMVTNLVEDKKEIPKATAKIFAAVSAGMVLGVPMTSYFG
                     GNFSFKMAMLFFVFLNTLSFIATLFFVPDFKKVNSVKISKQLLILRYPLLWISILCVI
                     CINAGIWGFYSYFSDFLHSVGK"
BASE COUNT          429 a          167 c          127 g          305 t
ORIGIN      
        1 atctttccta cactatgtaa gaaatcagaa aaataagagt aaaaacccca aattccagcg
       61 tttatacaaa taacacaaag tatgctaatc cataaaagcg ggtatcttaa aataagcaat
      121 tgtttgctta tttttacaga atttactttt ttaaaatcag gaacaaaaaa taaagttgct
      181 ataaaagata aggtatttaa aaatacaaaa aataacattg ccattttaaa actaaaattt
      241 ccaccaaaat aactagtcat aggtacaccc aaaaccattc cagcactaac tgctgcaaaa
      301 atcttagctg tagcttttgg aatttctttc ttatcttcga ccaaatttgt aaccatactt
      361 agagcaagag ctatataaat aggatgaaaa aaagcaggaa tagctcttaa aataagcaat
      421 tgccaaaatt cacccacaaa agcggaagtt aacgagctta agataaacac agctaaacaa
      481 ataagcataa gttttttagg attgaaattt gcacaaagta gcgggacaat aggggagcaa
      541 aaagttatca cgagtgcaaa aatactcaca caccaacccg catctgaaat acttacactg
      601 aaattttgag aaacaatagg aattataccc atcatcccta gttctgtgct caaaatccca
      661 aataccccta aacaaaatac tagaataatt tgagcatttg aagctttatt taaatttttc
      721 attttatcct ttcaattaat atttttaaaa gtataaaaga tgagagtagg tctaagtcaa
      781 taacctaaaa taaaaatatt tatctatatt aaataaaatc tttagaaaaa tttgaaactt
      841 caaaataagc atttaaaaga aataaaagat gccttaaaag cataaggcat cttttattta
      901 taggcttatt accccaatga gtgtgttttc atagcaagaa ttaagcacta tgtctatcat
      961 agcactagca taatcactgt agctgatttt actcaaacaa atgtttaaaa taaaattttt
     1021 atttttat
//
LOCUS       DARGEY010000203         1014 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.204, whole genome shotgun sequence.
ACCESSION   DARGEY010000203 DARGEY010000000
VERSION     DARGEY010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1014)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1014)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1014
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.204"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(99..>1014)
                     /locus_tag="SF008_001764"
     CDS             complement(99..>1014)
                     /locus_tag="SF008_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEG8233989.1"
                     /translation="VVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQFYKDGKR
                     VDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKEHNIEVEFGSEVESVKNENGVFL
                     VSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLGNEKILVVGGGN
                     SAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGIDINEVEDD
                     NGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDENKQSNVKGI
                     FVAGDIATKNGASIVTGLNDAVKILSVL"
BASE COUNT          312 a          200 c          118 g          384 t
ORIGIN      
        1 taaagtaatt tcgcaataag tttattaata tttattttat tttgcatatg aattttctag
       61 attaaactaa aataaaaatt tagcccaaag gctaaatttt aaagcacaga aagaattttc
      121 acagcgtcat ttaaccctgt aactatactt gctccatttt tagtagcaat atctcctgct
      181 acaaagatgc ctttaacatt gctttgtttg ttttcatcca ttaaaggcac gcctttatca
      241 tcaacattaa tcccacattt ttgtaaaaaa tcaagtggag tagaaccacc aatagcataa
      301 atgattctat cataaatatc gcttgtacca tcggtaaaat ttactttagc tttgccatta
      361 tcatcttcta cttcattaat gtcaattcct aattttaact ctaccttacc cgaatttcca
      421 gcttcgtgaa tatctttaag atttatatca tttaatcttg taaattcttt tttacgataa
      481 caaaggctaa cttgatttga atttgccaaa tccacagcgt attctgctgc tgaatttccg
      541 ccacctacaa caagaatttt ttcatttccc aaaactgaat tggcattaaa attaatgatt
      601 tttgttaaag tcataggaag tttgtaatca ggtttattag gtttacccat tctacctata
      661 gcaacaataa tgtttttaca ctcataaaca cctttagctg tacttactaa aaaaactcca
      721 ttttcatttt taacgctctc aacttcagaa ccaaattcaa cttctatatt gtgctctttt
      781 aaagcgtttt gaaaagtttc tatagtgctt tctttggtgc catcttcaaa aggaacatgt
      841 ccgtgattgg ttccttcgca tcccttataa gctttatcta ctcttttgcc atccttataa
      901 aattgcatta aagtttgaca aatgttattt gatttttcta gtatcaaaac ttctttgttt
      961 ttaagcttgg cttcaactgc acagcctatc cctgttggac ctgcacctac taca
//
LOCUS       DARGEY010000204          965 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.205, whole genome shotgun sequence.
ACCESSION   DARGEY010000204 DARGEY010000000
VERSION     DARGEY010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 965)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 965)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.205"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>965
                     /locus_tag="SF008_001765"
     CDS             <1..>965
                     /locus_tag="SF008_001765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233990.1"
                     /translation="AKFIYENIEKPLSSKIKFVLNENKFMIESKLSNETHKYFYFKNS
                     FTRETFNMVKNSQFLLQGIFSNEDFKTVFEFQDENQQKISHNINKAGDIQTLAIPKEC
                     KFIRFGLRIQGSGKFQIDNLILDFLNPQPFALIAKSKKLVLTKQYPSYDDLYKYGFLH
                     SRIKAYKEKGILVDVFKLSNTQRYECREFEGIDVMTASNDVLEETLISGQYDHILVHF
                     LDKNMWSVLKKFIDKIKITVWIHGAEIQIWQRREFEFERYSEIEIQRQKKLSDQRVKF
                     WTEIFNANYKNIHFVFVSEYFKNESLGDLKVALEPSKYTIIHNPI"
BASE COUNT          391 a          103 c          145 g          326 t
ORIGIN      
        1 gctaaattta tatatgaaaa tatagaaaaa ccgttgagtt ctaaaattaa atttgtatta
       61 aatgaaaaca aatttatgat agagtcaaag ctttctaatg aaacgcataa atatttttat
      121 tttaaaaatt cttttacaag agaaactttt aacatggtaa aaaattcaca gtttctactt
      181 caaggtattt tttcaaatga agattttaaa acagtatttg aatttcaaga tgaaaaccaa
      241 caaaaaattt ctcataatat taacaaggct ggagatattc aaactttggc catacctaaa
      301 gagtgcaaat ttatccgttt tggtctacgc atacagggca gcggcaaatt tcaaatagat
      361 aatttaattt tagatttttt aaatccacaa ccttttgcac ttattgctaa aagtaaaaaa
      421 ttggtcttaa ctaaacaata tccttcttat gatgatttat ataaatatgg ttttttacat
      481 tcaaggataa aagcatacaa agaaaaaggt atcttagttg atgtatttaa gcttagcaac
      541 acgcaaagat atgaatgcag agaatttgaa ggtattgatg tgatgacagc ctctaatgat
      601 gttttagaag aaactttaat aagtggacaa tatgatcata tattagtaca ttttttagat
      661 aaaaatatgt ggagtgtctt aaagaaattt atagataaaa ttaaaattac agtttggatt
      721 catggtgctg aaattcaaat ttggcaaaga agagaatttg aatttgaaag atatagtgaa
      781 attgagattc aaaggcaaaa aaaactttct gatcagagag taaaattttg gacagaaatt
      841 tttaatgcaa attataaaaa catacatttt gtttttgtaa gcgaatattt taaaaatgaa
      901 agtttgggtg atttaaaagt agctttagaa cctagtaagt atactattat acataaccca
      961 ataga
//
LOCUS       DARGEY010000205          958 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.206, whole genome shotgun sequence.
ACCESSION   DARGEY010000205 DARGEY010000000
VERSION     DARGEY010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 958)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 958)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..958
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.206"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(1..958)
                     /locus_tag="SF008_001766"
                     /pseudo
     CDS             complement(1..958)
                     /locus_tag="SF008_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
BASE COUNT          346 a          116 c          159 g          337 t
ORIGIN      
        1 agtattaaga taaaaggtgt ttattaatat ctttagaatt tgcatagagc gtgataggaa
       61 aaagatagcg aatataacct ctaaattctt taattttaaa taaatctaat ttatctttat
      121 gggggggggt aaaattaaaa tttatagcaa gtaaattcat ggtatcgaag gtctttgatt
      181 ggcggatttc ttccatatca agatagcata cattgtcttt gttaaaatat tttaataaat
      241 aagagatgat aaaaactcct tgttgtagtt cgtttatatc gattttaatt ttatgatttt
      301 gatgagtaag atagtcaata taataacgcc aatcataagt tagattaaat tcagggggat
      361 agtttcttaa aactttactc caatctcttc cccagctatg ctttaaaagt cccattggat
      421 ctcgaactcc gcaaataatc ttagaattaa aatctaataa agatagatat ttatcaaaat
      481 aaggtagatt aatttctgat atattaatag catattgagc aattgtatta tcatttagac
      541 acatgtaatt aatacaatat ctctctttgc tatcaggtgg taaaacccag gaggcaaaac
      601 aagttacatc gcaacattga ttaaggtatc taaaaatgct gctgctccaa cgccatgtgg
      661 agaaatatag ataaatttat agtgtttagg caggggtaaa tttaaatccc aagctaattc
      721 tgcgcaatgt cgactagaat ctatttctat aaaattagga ttgattaaag gtggataagg
      781 atgttttgtt gataaatatc tatccctaaa ttcgttagaa ttgagccaag tgcaaattgt
      841 ttcaatattt tccaaaacaa aggtaaaaaa atttttcatt attcgaattt tttaaagctt
      901 gtaaaagaat ttgagctagg gttggagtta ggttattttt tatatagagt aaaagatt
//
LOCUS       DARGEY010000206          952 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.207, whole genome shotgun sequence.
ACCESSION   DARGEY010000206 DARGEY010000000
VERSION     DARGEY010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 952)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 952)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..952
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.207"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            82..891
                     /locus_tag="SF008_001767"
     CDS             82..891
                     /locus_tag="SF008_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEG8233991.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKGFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD"
BASE COUNT          373 a          126 c          159 g          294 t
ORIGIN      
        1 caaaaatatc ctttttaaaa taagtaattt tagcataatt atgctaaaat atttttttat
       61 gtaaatttat aaggaaaaaa aatgaaaaaa atcatttctt tagcccttgc tttagcttta
      121 agtgcaagtg cagcagaact taaaatggca actacaacaa gcactgacaa tacaggactt
      181 ttagatgctc taaaacctct ttatgaaaaa gaaagtggca ataccttaaa atgggttgcc
      241 gtaggaacag gtgcggcttt aaaaatgggt gaagattgca atgctgatgt gctttttgtg
      301 cattctccaa aggctgaaaa agaatttatg aaaaaaggct ttggtgtaga tagaactcct
      361 gtgatgtata atgattttat catcatcgca gataaatctt tagcttctaa atttaaaggt
      421 aaaaatttaa aagaaagctt agaacttatc aaaaatgaaa agcttacttt catctcaaga
      481 ggcgataaat caggcactga caataaagaa aaaagccttt ggaaaaatct tggcggtgtt
      541 cctgaaaagc aaagctggta tcaacaaagc ggacaaggta tgttagcaag cattaaaatt
      601 gctgaagaaa aaaaaggtgt gattttaacc gatcgtggta cttatatcaa atatgaagcc
      661 aatgaaaaag gcaaaccaaa cttagtcatt gtaaatgaag gcgatgatag tcttaaaaat
      721 ttttattctg ttatagcgac aaatcctaag cattgtaaaa atgtaaatta tacagaagct
      781 agtaaattta tcaaatgggt aacaagtgat aagactttaa atttcattgc tgattttaaa
      841 cttcttaata aacctttatt tgtaattgat gcaaaaacaa gaaaagacta aaaattaagc
      901 aggttttaac ctgcttaaaa tatcattttt tacttattgt aactttttta tt
//
LOCUS       DARGEY010000207          941 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.208, whole genome shotgun sequence.
ACCESSION   DARGEY010000207 DARGEY010000000
VERSION     DARGEY010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..941
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.208"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>941
                     /locus_tag="SF008_001768"
     CDS             <1..>941
                     /locus_tag="SF008_001768"
                     /inference="COORDINATES: protein motif:HMM:NF024398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233992.1"
                     /translation="QKAKLNKEKCQFEQDLKVCKEKLKQKDSELKRIENTLSYRIGNR
                     IVKSKNIKDILILPYNLFKEYRNFKLRQKNKNLLFQEKNKFKRNIEFRKNQIFECKIE
                     NLDLLKIACIMDEFTYESFKYECDLLQLSLENWKNEIMHFKPSLLFIESAWQGKNSLW
                     KLKISGFSIELQELIGYCKENHIPTIFWNKEDPVHFNTFLPIACSVDFIFTTDIDCVS
                     KYKFYAGHEDVYCLPFAAQTKMYNPIEEFDRKDEFNFAGSYYLRYPQRQLDFDNLINA
                     IKPYKNISIYDRNFNNPHSHYTFPNCYKDMIIGNLPF"
BASE COUNT          385 a          101 c          133 g          322 t
ORIGIN      
        1 caaaaagcta aattaaataa agagaaatgt caatttgaac aagatttgaa ggtttgcaaa
       61 gagaagttaa aacaaaaaga tagcgaattg aaaagaatag aaaatacttt atcatataga
      121 ataggaaatc gtatagtcaa atctaaaaat attaaagata ttctaatcct tccatataat
      181 ttatttaaag aatataggaa ttttaaacta agacagaaaa ataaaaatct gttatttcaa
      241 gaaaaaaata agtttaaaag aaatatagag tttagaaaaa atcaaatttt tgaatgtaaa
      301 attgaaaact tagatttatt gaaaattgca tgtataatgg atgaatttac atatgaatcc
      361 tttaaatatg aatgtgattt attacaatta agtctagaaa attggaaaaa tgaaattatg
      421 cactttaaac ccagtttact atttatagag tcagcgtggc aaggaaagaa ttctttgtgg
      481 aaattaaaga tttcaggatt ttccatagag cttcaagagt tgattggata ttgcaaggaa
      541 aatcatattc ctactatatt ttggaacaaa gaagatcctg tacattttaa tactttttta
      601 ccaatagctt gttctgttga ttttattttt actacagata tcgactgtgt ctcaaagtat
      661 aaattttatg ccggacatga agatgtgtat tgtttacctt ttgcagctca aacaaaaatg
      721 tataatccta tagaagaatt tgatcgcaaa gatgaattta atttcgctgg atcatattat
      781 ttgcgatatc ctcaaagaca attggacttt gacaatctta taaatgcgat aaaaccttat
      841 aaaaatataa gtatttatga tagaaatttt aataatcctc attctcatta tacttttcct
      901 aattgttata aagatatgat tataggaaat ttacctttta a
//
LOCUS       DARGEY010000208          896 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.209, whole genome shotgun sequence.
ACCESSION   DARGEY010000208 DARGEY010000000
VERSION     DARGEY010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 896)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 896)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.209"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            307..744
                     /locus_tag="SF008_001769"
                     /pseudo
     CDS             307..744
                     /locus_tag="SF008_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883537.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          352 a           86 c          127 g          331 t
ORIGIN      
        1 ctaaaaaatc tatatattat ttggattata atttggggat ttggggctat tttaggttat
       61 tatatgggat atgatgcaac ttttactaaa atgttctttt ttcttgttat attatatctt
      121 tttccattgt tgccttattt ttattatttg atttataaaa aagcaagaaa tacaaaaaat
      181 atatttgttg ctatttgttg ctactattga ttaatagaaa taatagtaat tttgagctgt
      241 acttaattat tattgtgata catattataa tatttgcaat aatttattta attaaaagaa
      301 ataaaaatga aaactcaaat caataattta aaagattatg cagaacttgc atgggctagt
      361 tatttttatt ttgatttttt aaatactaga aatatatttg agttagattt taatcaagaa
      421 aaaattcaag aagaaaattc tcttagaggc tatagagaaa taaaggtaaa tttagaacat
      481 gttgtcagtc aaaaacataa agataaagaa gtattgattg atttaagaca agatgatgct
      541 tggcaatcaa aaatgttaaa tttctttgat gaaaagacaa attttgataa actaaatgga
      601 gaatttggag aattacagac taaaaatttc attcaaagat atgaggttca atttcatcag
      661 cctaacacta caagtggctt tagtgctact ttgttttatg ataaagaaaa agatgaattt
      721 atagtaggat ttaggggaac tgaaactgat aattttatta gctcgattca agatatagtt
      781 caagacataa ctctatccct caatggcaat atccaatctt cttttctttt agaattttta
      841 gaacaagtaa ataaaataat caaaaacaaa cacaaaagaa ttatatttgt aggaca
//
LOCUS       DARGEY010000209          833 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.210, whole genome shotgun sequence.
ACCESSION   DARGEY010000209 DARGEY010000000
VERSION     DARGEY010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 833)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.210"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>833)
                     /locus_tag="SF008_001770"
     CDS             complement(<1..>833)
                     /locus_tag="SF008_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG8233993.1"
                     /translation="ILPTFNVEKYIARAIESCINQTFKDIEIIVVDDCGSDKSIDIAK
                     EYAKKDERIKIIHNEKNLGLLRARYEGVKAANSLYIMFLDPDDYLELNACEECVRILN
                     TEKESDFIWFDFIYKRISGVINRGNFLQDQTFTIFEYCENIIIQNKNICYWNLCSKLI
                     KTEIYLASFSFLEKEILNTRLIMAEDALIYFFIILNCGKITTSAKNIYYYCENDNSSV
                     GTNDIVKIEKNLQDEKMVIGILLEFLNHHKKNIELYLYVFLKIMIGKLIVYKLHREIK
                     L"
BASE COUNT          301 a          128 c           63 g          341 t
ORIGIN      
        1 atagttttat ttctcgatgt aatttatata cgattaattt accaatcatt atttttaaaa
       61 aaacatacaa atacaattca atattctttt tatgatgatt taaaaattct agtaaaattc
      121 caataaccat tttttcatct tgtaagtttt tttcaatttt gacaatatca ttagtcccaa
      181 cagaactatt gtcattttca caataataat aaatattttt tgcactagta gtaatttttc
      241 cacaatttaa aataataaaa aaataaatta atgcatcttc tgccataatt aatctagtat
      301 ttaatatctc tttttctaaa aaagaaaaag atgctaaata tatttctgtt ttaataagtt
      361 tagaacaaag attccaataa cagatatttt tattttgaat tatgatattc tcacaatatt
      421 caaaaatagt aaaagtttga tcttgtaaaa aatttcccct atttataacc cctgaaattc
      481 ttttatatat aaaatcaaac catataaaat cactttcttt ttcagtgttt aaaattctca
      541 cacactcttc acaagcatta agttctaaat aatcatcagg gtctaaaaac atgatatata
      601 aagaattagc tgccttaact ccttcatatc tagctcttaa aagacctaaa tttttttcat
      661 tgtgaattat ttttattctt tcatcttttt tggcatattc tttagctata tctatacttt
      721 tatcactccc acaatcatcc actacaatta tttctatatc tttaaaagtt tgattgatac
      781 agctttctat tgctcttgct atatactttt ctacattaaa agttggcaag atg
//
LOCUS       DARGEY010000210          827 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.211, whole genome shotgun sequence.
ACCESSION   DARGEY010000210 DARGEY010000000
VERSION     DARGEY010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.211"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..807
                     /locus_tag="SF008_001771"
     CDS             <1..807
                     /locus_tag="SF008_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG8233994.1"
                     /translation="RITANPRNPQLIELKNVLNRLLDALQARVGSDMNEIQRVFNSYK
                     SLDFTTEVKDANGAVEVTTNALGQEIIKMLKQSSDFANALANESGKLQTAVQSLTTSS
                     NSQAQSLEETAAALEEITSSMQNVSVKTSDVITQSEEIKNVTGIIGDIADQINLLALN
                     AAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANTNLLVQSINDMAESIKEQT
                     AGITQINDSVAQIDQTTKDNVEIANESAIISSTVSDIANNILEDVKKKRF"
BASE COUNT          307 a          124 c          143 g          253 t
ORIGIN      
        1 agaatcactg ctaatccaag aaacccacaa cttattgaac ttaaaaatgt tctaaataga
       61 cttcttgatg ctttacaggc tagagtaggt tctgatatga atgaaattca aagagtattt
      121 aatagttata aatctcttga ctttactact gaagtaaaag atgccaatgg agctgtagag
      181 gtaactacta atgcactagg acaagaaatc attaaaatgc taaaacaaag ttcagacttt
      241 gctaatgctt tagctaatga aagtggaaaa ttacaaactg ctgttcaaag cttaaccact
      301 tcttcaaatt ctcaagctca atctttagaa gaaactgcag cagctttaga agagatcact
      361 tcttctatgc aaaatgtttc agttaaaact agtgatgtta tcactcaatc tgaagagatt
      421 aaaaatgtta caggtattat aggtgatatt gcagatcaaa tcaatctttt agctttaaat
      481 gcagctattg aagcagctcg tgctggagaa catggtagag gctttgctgt tgtggctgat
      541 gaagttagaa agttagctga aagaactcaa aagtctttat cagaaattga agctaatact
      601 aatttacttg ttcaatctat caatgatatg gcagaaagta ttaaagaaca aactgcaggt
      661 atcactcaaa tcaatgatag cgtagctcaa attgatcaaa ctactaaaga taatgttgaa
      721 attgctaatg aatcagctat tatttctagt acagtaagtg atatagctaa taatatctta
      781 gaagatgtta agaagaagag gttttaatta atcattcaag ccctttc
//
LOCUS       DARGEY010000211          806 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.212, whole genome shotgun sequence.
ACCESSION   DARGEY010000211 DARGEY010000000
VERSION     DARGEY010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 806)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.212"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>806
                     /locus_tag="SF008_001772"
     CDS             <1..>806
                     /locus_tag="SF008_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEG8233995.1"
                     /translation="SLIIKASRKLAELNGLSKSMPNPSILINALILQEAKDSSEIENI
                     ITTHDELFLSRVDENKLTRAAKEVKDYESALKKGYELLKKEQLLRNAHILEIQKRLER
                     NNAGFRKQSGTMLKNPITGEIKHIPPQNPNDIQELMGNLELYINDDSLDEFDFLVKMA
                     IIHYQFESIHPFYDGNGRTGRIINILYLVYKGLLDFPILYLSAYIVKNKDEYYKLLQK
                     VRDEGDILKWIEYILKGIEQTAVKTIETIIKIEKMMSNVGEILQNKTNFY"
BASE COUNT          337 a           91 c          136 g          242 t
ORIGIN      
        1 agtcttatca ttaaagcttc tagaaaatta gcagagttaa atggacttag taaaagtatg
       61 ccaaatccaa gtattttaat caatgctttg attttacaag aagcaaaaga ttcgagtgag
      121 atagaaaata tcatcacaac acatgatgaa ctttttttat cacgagttga tgaaaacaaa
      181 ctcacaagag cagcaaaaga agtgaaagat tatgaaagtg ctttaaaaaa ggggtatgag
      241 cttttaaaaa aagagcaatt attaagaaac gcacatattt tagaaattca aaaaagatta
      301 gaaagaaata atgcaggttt tagaaaacaa agtggaacta tgcttaaaaa tcctattaca
      361 ggagaaatca aacacatacc accccaaaat cctaatgata tacaagaact tatgggaaat
      421 ttagaactat acattaacga tgatagttta gatgaatttg attttttagt aaagatggca
      481 attatacatt atcaatttga aagcattcat cctttttatg atggcaatgg cagaacgggt
      541 aggattataa atatacttta tttagtatat aaaggacttt tggattttcc tattttatat
      601 cttagtgctt acatagtaaa aaataaagat gagtattata agcttttgca aaaagtgcgt
      661 gatgaagggg atattttaaa gtggatagaa tacatactta aaggcataga gcaaaccgct
      721 gtaaagacta ttgaaactat tattaagata gaaaaaatga tgtctaatgt aggtgaaatt
      781 ttacaaaata aaacgaattt ttatag
//
LOCUS       DARGEY010000212          798 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.213, whole genome shotgun sequence.
ACCESSION   DARGEY010000212 DARGEY010000000
VERSION     DARGEY010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.213"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..437)
                     /locus_tag="SF008_001773"
     CDS             complement(<1..437)
                     /locus_tag="SF008_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233996.1"
                     /translation="MDRELFITRLAFINNDEIDTIDKNSSIAYLKALYQCENSIAINY
                     NQEELFTQATAINNLGYNSTFTKIFILDKEKLNDTYLDARKRLYKSINTLKEKRNEKI
                     KDIQDYLNKEISLQDNLNNQSFNTKENDVNLILNEVFNIEQFY"
BASE COUNT          281 a           96 c           98 g          323 t
ORIGIN      
        1 tcataaaatt gctctatgtt aaatacttcg tttaaaatta aattaacatc attttcctta
       61 gtattaaagc tttgattatt tagattatct tgtaaggaaa tttctttatt taaatagtct
      121 tggatatctt ttattttttc atttcttttt tcttttaaag tattgataga tttataaagc
      181 ctttttctag catcaagata ggtatcattg agcttttctt tatctaggat gaagatcttt
      241 gtgaaagtag aattatagcc tagattgttt atagcggtag cttgggtgaa aagctcttct
      301 tgattataat ttatagctat ggaattttca cattgatata aggcttttaa gtatgctatg
      361 gatgaatttt tatctattgt gtctatttca tcattgttta taaaagcaag ccttgttata
      421 aataattctc tatccatttt tttctaaata tttaagataa atgaatatta tatcaaatat
      481 attaaatttt tgatagtctt taaagatttt catatatcac ataaacactt gagatcaata
      541 taggaacatt acacacaaac cctataaacc aacttaattt tttgcatttt tctcctgtgc
      601 tataacattt aaataaataa gcttgcaata aacaaggaag tataaaaaat gtgattataa
      661 aaaaaataat agttatacca cttaaaaatc caaaataatt atgtgcttta tattcttgtg
      721 gtgataattt ttcaatttct ggaggaccaa gtaatacaag ccctctagaa gtttcaagat
      781 cataagtaag ataaaata
//
LOCUS       DARGEY010000213          793 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.214, whole genome shotgun sequence.
ACCESSION   DARGEY010000213 DARGEY010000000
VERSION     DARGEY010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.214"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>793)
                     /locus_tag="SF008_001774"
     CDS             complement(<1..>793)
                     /locus_tag="SF008_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEG8233997.1"
                     /translation="TLFKDCIFENKVDFHNSKITNNIYFNNAHFKDYVDFHECEFEKT
                     ASFYGVRFDKAPNFSACYFKEPKAVNLINVDIDKLDFKSLEQYIKDKYQDETYENKQE
                     LTEEQRNNNCKLKCAKHLKDSFRVIKDVLITQNNTLEAQEWHKLELYAKEKENHINLN
                     VKEREKNTDIFKNILIWFNCVLLNVYRNTSDHHNDFLKILNFTIGMIALYGVFFYLLL
                     EVYMYLDIIFIESFFRFKIIDYIYLCLFVFLTIIMFLYKNKKSIFT"
BASE COUNT          299 a          115 c           63 g          316 t
ORIGIN      
        1 ttgtaaaaat acttttctta tttttatata aaaacataat aatagttaaa aatacaaaca
       61 aacacaaata tatataatct atgattttaa atctaaaaaa actttcaata aatataatat
      121 ctaaatacat atatacttct aacaatagat aaaaaaacac tccatataaa gcaatcatcc
      181 ctatagtaaa attcaaaatt tttaaaaaat cattatgatg atcactagta tttctataca
      241 cattcaacaa aacacaatta aaccatatta atatattctt aaatatatca gtattttttt
      301 ctctttcctt aacatttaga tttatgtgat tttctttctc tttcgcataa agttctaatt
      361 tatgccattc ttgagcttct aaggtattat tttgagtgat taaaacatct tttatgactc
      421 tgaaagaatc ttttaaatgt ttggcacatt ttaatttaca attattatta cgctgttctt
      481 ctgttaattc ttgcttattt tcatacgtct catcttgata tttatctttt atatattgtt
      541 ccaatgattt aaaatctagc ttatctatat cgacattgat taaatttaca gcttttggtt
      601 ctttaaaata acaagcactg aaatttggag ctttatcaaa tctcacccca taaaaactag
      661 ctgttttttc aaattcacac tcgtgaaaat caacataatc tttaaagtgg gcattgttaa
      721 aataaatatt attggtaatt ttagaattat ggaaatcaac cttattctca aaaatacaat
      781 ctttaaataa tgt
//
LOCUS       DARGEY010000214          782 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.215, whole genome shotgun sequence.
ACCESSION   DARGEY010000214 DARGEY010000000
VERSION     DARGEY010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 782)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.215"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            150..>782
                     /locus_tag="SF008_001775"
     CDS             150..>782
                     /locus_tag="SF008_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HEG8233998.1"
                     /translation="MHQPTLRVLNILELLAKEKLTLSAIAKKLNIPAGTLWPILQTLQ
                     EKKYIKCDLKNKSYYLDFKIIELGCNIKNENNIFEIIKKHMKNIRNLTNQTCQMGILK
                     DGNVLYLEKIDANNTVQLKSFIGTSYPAYATSLGKALLSNKNKKELEKLYPKNFDKIT
                     ENTLNNINELYQQIKQIKKEKIAIEIGEMNPQIECMAIGIEHKNKIIAAIS"
BASE COUNT          363 a           89 c           88 g          242 t
ORIGIN      
        1 cttggtaaaa attcgtattt tattcttatt aactgccaat ttttacaaaa aaatattaaa
       61 attaataaat aataaaaatt atgattttat gttactaaaa gtaaaaaata tgctaaaatt
      121 tataaaaata aaacaaggat aaagacaata tgcatcagcc cactcttaga gtgttaaata
      181 ttctagaatt acttgcaaaa gaaaagctta ccttaagtgc tatagctaaa aaattaaaca
      241 ttcctgctgg aactctttgg cctattttac aaactcttca agaaaaaaaa tatatcaaat
      301 gtgatttaaa aaataaaagt tattatttgg attttaagat tatagaatta ggatgtaata
      361 taaaaaatga aaataatatt tttgaaataa tcaaaaagca tatgaaaaat ataagaaatt
      421 taaccaatca aacttgtcaa atgggaattt taaaagatgg aaatgtgctt tatttagaaa
      481 aaattgatgc taataataca gtacaattaa aatcttttat aggcacttcg tatcctgctt
      541 atgcaacatc tttaggcaaa gccttactat caaataaaaa taaaaaggaa ttagaaaaac
      601 tttatcctaa aaattttgat aaaattacag aaaacacctt aaataatata aatgaactct
      661 atcaacaaat caaacaaatt aaaaaagaaa aaattgccat agaaattgga gaaatgaatc
      721 ctcaaattga atgtatggct ataggcatag aacataaaaa taaaataatt gctgccatta
      781 gt
//
LOCUS       DARGEY010000215          726 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.216, whole genome shotgun sequence.
ACCESSION   DARGEY010000215 DARGEY010000000
VERSION     DARGEY010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.216"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..397)
                     /locus_tag="SF008_001776"
     CDS             complement(<1..397)
                     /locus_tag="SF008_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8233999.1"
                     /translation="MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDSEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     IIHENTKQTSMQFKNLKFFSRIFKNENFLS"
     gene            complement(394..>726)
                     /locus_tag="SF008_001777"
     CDS             complement(394..>726)
                     /locus_tag="SF008_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEG8234000.1"
                     /translation="YSITYHDPCHARKMQGVFKEPRELLKTNYHFVEMSNSNTCCGFG
                     GVGMQTDYYDRALSVGLKKAQMIDESKASVVSAECSACRMQISNALEQNSSKVVFASP
                     LELIAKAL"
BASE COUNT          232 a          137 c           82 g          275 t
ORIGIN      
        1 cagaaagaaa attttcattt ttaaaaattc ttgaaaaaaa ttttaaattt ttaaattgca
       61 tacttgtttg ttttgtgttt tcatgtatta ttttttcgga ttttaggatg ttgtgttcta
      121 tatcatcttc ttggttttga ttatctttgt ttgatttcat gtcaaaatct tcaacgataa
      181 tcatatcttc actatcacaa atattaaaat gttttacaat ttcttcaaaa gtaaaactgt
      241 catcactaaa ttccaaaaga tctacatttg aagtgataaa atcaacacca tctcgttctt
      301 caatcttatc tttaatcaca aaagcatcaa cacaaaagca cgatctttga atttcatatt
      361 cagaactttt gcctttaaat actatcttca tcatcacaaa gcttttgcta taagttctaa
      421 aggactagca aaaacaacct tgcttgaatt ttgttctaat gcatttgaaa tttgcattct
      481 gcaagctgaa cactcggcac ttaccacact agccttactt tcatcgatca tttgtgcttt
      541 tttaagccct acacttaagg ctctatcata ataatccgtt tgcataccca ccccgccaaa
      601 accgcaacaa gtattagaat tactcatttc tacaaaatga taatttgttt ttaaaagttc
      661 tcttggctct ttaaaaaccc cttgcatttt tcttgcatgg caaggatcgt gataagtaat
      721 gctata
//
LOCUS       DARGEY010000216          681 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.217, whole genome shotgun sequence.
ACCESSION   DARGEY010000216 DARGEY010000000
VERSION     DARGEY010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 681)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.217"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..315)
                     /locus_tag="SF008_001778"
     CDS             complement(<1..315)
                     /locus_tag="SF008_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8234001.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQS"
     gene            complement(476..>681)
                     /locus_tag="SF008_001779"
     CDS             complement(476..>681)
                     /locus_tag="SF008_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8234002.1"
                     /translation="VQNQITSTINNITVTQVNVKSAESQIRDVDFASESANYSKANIL
                     AQSGSYAMAQANSSQQNVLRLLQ"
BASE COUNT          200 a          121 c          119 g          241 t
ORIGIN      
        1 gctttgacca tcttgagcag cttgagtcgc tttagtcttg atggtatcta agattttaag
       61 ttgctcatcc atagccttat ctgcagtttg caagatacct atagcatcat taccattgtt
      121 tatagcttga cctaaagttg ctgcttgtga acgcaaagaa tctgctatcg ccatccctga
      181 agcatcatct gctgcggagt tgattctaag acctgaactg agtctactta aagacttgtc
      241 aagctctcta gcattaacaa ctgaatttgc atgtgcgttc aatgcaccga tgttggtgtt
      301 tattctaaaa cccattttaa atcctttcaa aatattgcat cgaaaagatt aaagcaagaa
      361 gtgttccaag ttttgattca aattgaaatt ttatttagaa ataaaaaaag cctagtatta
      421 ctactaggct tggatttgta taaattacag taaacgctaa agaatgtttt atatactact
      481 gtagtaatct taaaacattt tgctggcttg aatttgcttg agccatagca taagaaccac
      541 tttgagccaa tatatttgct ttagagtaat ttgcactctc gcttgcaaaa tctacatctc
      601 tgatttgtga ttctgctgat ttaacattta cctgggttac agtaatgttg tttatagtcg
      661 atgtgatttg attttgcaca g
//
LOCUS       DARGEY010000217          679 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.218, whole genome shotgun sequence.
ACCESSION   DARGEY010000217 DARGEY010000000
VERSION     DARGEY010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.218"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            42..272
                     /locus_tag="SF008_001780"
     CDS             42..272
                     /locus_tag="SF008_001780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8234003.1"
                     /translation="MEKNTINNENIQKNEILIPKRVLFDEKTLKMIEMMIPAYKDEIS
                     NVAKENEKINQMIKLAIEKMFKNDFLNKINNF"
BASE COUNT          299 a           60 c           94 g          226 t
ORIGIN      
        1 ttatggtata atttatatat tttaacaaat aaaggataaa aatggaaaaa aatacaataa
       61 ataatgaaaa tattcaaaaa aatgaaatat taattccaaa aagagtatta tttgatgaaa
      121 aaacattaaa aatgatagaa atgatgattc ctgcttacaa agatgaaatt tctaatgtag
      181 ctaaagaaaa tgagaaaatt aatcaaatga ttaagcttgc tatagaaaaa atgtttaaaa
      241 atgatttttt gaataaaata aataattttt aattaggttt tttatgaata atgttttgtt
      301 gcacagaata actgagaaag gaaacattcg ctattatagc atagaaatta ttaccactct
      361 atttgaggaa tatatggttg agagagttta cggaaatgtg cgttttaaaa gttgcacagg
      421 aagaaaaaat aatgtatttc caagttttaa tgaggcacaa atttttttga gaagttaaag
      481 aaacaaaaaa tgaaaaaagg gtatgcgtaa gtttttgctc aaaaaataag aaaaaacatt
      541 gataaaatag gcttttgaga taagctttta gctaaactct caaaaacagg taaaaaatcc
      601 ttatcaaatc cgctaatttc aatttttata gccatttgta tcctttctta tataattttt
      661 atttttatta taccataaa
//
LOCUS       DARGEY010000218          668 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.219, whole genome shotgun sequence.
ACCESSION   DARGEY010000218 DARGEY010000000
VERSION     DARGEY010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 668)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.219"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>668
                     /locus_tag="SF008_001781"
     CDS             <1..>668
                     /locus_tag="SF008_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG8234004.1"
                     /translation="IKNMQLDKQHELIFEITNLANDLALNIQDNNTQHKNDLKQILVK
                     LFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKELLEHSNDIVKMSQELSIL
                     TKDWILDHFANEDLWIANFTKKTLHLQEIHYTLEQYIKLKSIKQDLRAEKTHDYICNC
                     SLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNAIFEDALQNHH
                     FTTQ"
BASE COUNT          285 a          104 c           76 g          203 t
ORIGIN      
        1 cattaaaaat atgcaattag acaaacaaca cgaactaatt tttgaaatta ccaatcttgc
       61 aaatgattta gctctaaaca ttcaagataa taatacacaa cacaaaaatg atttaaaaca
      121 aattcttgta aagctatttc aatacatcaa aattcatttt aaagatgaag aaaaatttat
      181 ggaaagcatt gattttcctt taattgaaga acataaaaaa tctcatcaaa tattagtaga
      241 aaaaactaaa gagcttttag aacactcaaa tgatattgta aaaatgtctc aagaactttc
      301 catattaacc aaagattgga ttttagatca ttttgctaat gaagatttat ggatagctaa
      361 ttttacaaaa aaaaccctac accttcaaga aatccattat accttagaac aatacataaa
      421 actaaaatca atcaaacaag acctaagagc tgaaaaaact catgattata tttgcaattg
      481 ttctttgcgt atccatgcag ttccacagac tatacatcaa gagcttgtta gcaaagaaaa
      541 taccttaaag tgcgaaaaat gtgggcaaat tttagttcat ttggattatt ttgatttgaa
      601 tcaaaatttc gaaaaattca atgctatttt tgaagatgca ctacaaaatc accatttcac
      661 gactcaaa
//
LOCUS       DARGEY010000219          638 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.220, whole genome shotgun sequence.
ACCESSION   DARGEY010000219 DARGEY010000000
VERSION     DARGEY010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 638)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.220"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            71..535
                     /locus_tag="SF008_001782"
     CDS             71..535
                     /locus_tag="SF008_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8234005.1"
                     /translation="MSVSIMELLGFGELIKLPLIDSSKKYHNKNKQQLRLFIIQEILK
                     ENQKTITQIIDIINNLIEQCNTNTQNLQELIKLLKLASKNNETFKEREKLLYCPETLS
                     LITINNHLKEDDIQFIEQYYTYNQNTHEYERNDNLSSSDLEKLSNFFKLKNL"
BASE COUNT          294 a           85 c           65 g          194 t
ORIGIN      
        1 tatatccgaa acagctacaa aaaataatat atcgttaaac ggtttatatc tttcaggaat
       61 gacaattggc atgtctgtat caattatgga gttactagga tttggggaat taataaaatt
      121 accactaatt gattcttcaa aaaaatatca caataaaaac aaacaacaat tacgtctttt
      181 tattattcaa gaaattctca aagaaaatca aaaaacaatt acccaaatta ttgatatcat
      241 caataattta attgagcaat gtaatacaaa tacacaaaat ttacaagaat taataaaatt
      301 attaaaattg gcttcaaaaa ataatgaaac ttttaaagaa agggaaaaac ttttatattg
      361 cccagaaacg ctttcattga taacaataaa taatcatcta aaagaagatg atattcaatt
      421 tatagaacaa tactatacct ataatcaaaa tactcatgag tatgagcgca atgacaatct
      481 ttcttcgtca gatttagaaa aactttcaaa tttttttaaa ttaaaaaatc tataaggata
      541 attttatgga taaaatacaa gaaaacacca aaatagaaaa ggctatatta gccgaaaaac
      601 aacaaatctt tttaatacaa aataaattat ccgaaatt
//
LOCUS       DARGEY010000220          606 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.221, whole genome shotgun sequence.
ACCESSION   DARGEY010000220 DARGEY010000000
VERSION     DARGEY010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.221"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(117..202)
                     /locus_tag="SF008_001783"
     tRNA            complement(117..202)
                     /locus_tag="SF008_001783"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(166..168),aa:Leu,seq:gag)
     gene            complement(237..575)
                     /locus_tag="SF008_001784"
     CDS             complement(237..575)
                     /locus_tag="SF008_001784"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEG8234006.1"
                     /translation="MKKVLFLLLACTAVAFAAETNAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVLQ"
BASE COUNT          201 a          112 c          100 g          193 t
ORIGIN      
        1 ttaagttttt taaaaaaacc aatatttttt attttttgta actttaagaa attgtaagtt
       61 gaaatttgat tttgaatagt tagtatttta agttgaatga ttataatttt aaataatggt
      121 gcggttagcg agatttgaac tcgcacacgc ggagcgcacc accccctcaa gatggcgtgt
      181 ctaccaattc caccataacc gcatagaaaa aagcccaaaa agggctttga taagttttat
      241 tgtaaaacta taaaaggatt tgcgtaaagt gctattagcg cgataacaag agcatagata
      301 acttgtgctt caatcatcgc taaagcgata aacatagttg tcattaattt tggcccaaga
      361 ccagggtttc tagctgttcc tgcaattgtt gccgctgcag tattacccat accgatagca
      421 ccaccaagtg ctgcaacacc aagacctaag cctgctgcaa gaactgaaaa tgctttaatc
      481 catacattaa tagcttcttg ctctactgga gcattagttt cagctgcaaa agctactgct
      541 gtacatgcta ataataaaaa aagaactttt ttcattatct taacctttct ataaaaaaat
      601 tttttt
//
LOCUS       DARGEY010000221          600 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.222, whole genome shotgun sequence.
ACCESSION   DARGEY010000221 DARGEY010000000
VERSION     DARGEY010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 600)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.222"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            42..>600
                     /locus_tag="SF008_001785"
     CDS             42..>600
                     /locus_tag="SF008_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8234007.1"
                     /translation="MKKYFNIFKIFTNKTNAKFGLGVCSVVLSSSVCFAAVQATSKDG
                     KIFYISEHSFKDNQVYDPQAEIFKKINGKNFYASKSKYPISNLTMIHNNPKSGNKNLS
                     KLEILTPDTSKEEIITAFSTLGTVSSDTQAVPSSFIPFIVIAYAQNTNATNNKLILEN
                     GELSSVYFCKPSIGDCGVPNNSQKGD"
BASE COUNT          217 a           83 c           91 g          209 t
ORIGIN      
        1 tttgcgataa atcaaaaggt tttattttag tgagaaatga gatgaaaaaa tattttaata
       61 tttttaaaat ttttacaaat aagacaaatg caaaatttgg cttgggcgtt tgtagtgtgg
      121 ttttatcttc ttcggtttgt tttgcggcgg ttcaggctac aagcaaggat ggaaaaattt
      181 tttatatttc tgaacattct tttaaggata atcaagttta tgatcctcaa gcagaaattt
      241 ttaaaaaaat taatggaaaa aatttctatg cttctaagtc aaaataccct atatcaaatt
      301 taactatgat tcataataac cctaaatctg gaaataaaaa tttatccaag cttgaaattt
      361 taactccgga tacttcaaaa gaagagatca taacagcttt tagcacttta ggaaccgtat
      421 cttcagatac tcaagccgtt cctagttctt ttataccttt tattgtaata gcttatgctc
      481 aaaatacaaa tgcaacaaat aataaactta tattagaaaa tggagaatta tcttctgtgt
      541 atttttgcaa accaagcata ggggattgtg gagtacctaa taattctcaa aaaggcgatc
//
LOCUS       DARGEY010000222          593 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.223, whole genome shotgun sequence.
ACCESSION   DARGEY010000222 DARGEY010000000
VERSION     DARGEY010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.223"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>593
                     /locus_tag="SF008_001786"
     CDS             <1..>593
                     /locus_tag="SF008_001786"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8234008.1"
                     /translation="GIAVLFSACGNSIDEKTVKKYENQLNQTVKQEIASLSQDSGIKI
                     EFSDFKCNADGDFIACLSPNFKTLAKDNNDEYQELFQAKNIKIRSNEIYKGEANTSIS
                     IKEYYNDLFKNQKSIQSNLVFEDFKLGEKVVSDINASLFQQDPKIRSFINKLSSDSYT
                     LSFDNSINKQENNYLDNLDIKFYNAKLNFNTNLNINL"
BASE COUNT          254 a           80 c           74 g          185 t
ORIGIN      
        1 ttggaatagc tgttttgttt tcagcttgcg gaaattccat agatgaaaaa acagttaaaa
       61 aatatgaaaa tcaactaaat caaacagtta aacaagaaat tgcaagtctt tctcaggact
      121 ctggaataaa gattgaattt tctgatttta aatgcaatgc agatggtgat tttatagcgt
      181 gtttaagtcc aaatttcaaa actcttgcaa aagataataa cgatgagtat caagaactat
      241 ttcaagcaaa aaatatcaaa attcgttcaa atgaaattta caaaggcgaa gcaaatacat
      301 caattagcat taaagaatat tacaacgatc tttttaaaaa ccaaaaaagc atacaatcaa
      361 atttggtttt tgaagatttt aaacttggag aaaaagttgt tagtgacatc aatgcaagct
      421 tatttcaaca agatccaaaa atcagatctt ttatcaataa attaagctcg gattcttata
      481 ctttatcatt tgataactct ataaacaaac aagaaaacaa ttatctagat aatcttgata
      541 taaaatttta taacgcaaaa ttaaatttca atacaaatct aaatataaat cta
//
LOCUS       DARGEY010000223          567 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.224, whole genome shotgun sequence.
ACCESSION   DARGEY010000223 DARGEY010000000
VERSION     DARGEY010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 567)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.224"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>567
                     /locus_tag="SF008_001787"
     CDS             <1..>567
                     /locus_tag="SF008_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006751.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8234009.1"
                     /translation="TGSIGVGAGILHTENYGRLSLVKNDGRDINISGTGLSAIGMGAT
                     DMISQSSVSLRESKGQISAANADAMGFNAYNGGGAKQIIFASSIAGFMSQAGSGFSAG
                     SGFSVGSGKNYSAILSASIQIVSSAASISSTYVVSAGSGFSAGSGNSQFAALRISTVS
                     AHDETAGVTTLKGAMAVMDIAETAITNLD"
BASE COUNT          157 a           93 c          133 g          184 t
ORIGIN      
        1 acaggtagca taggtgtagg agctggtata ttgcacactg aaaattatgg aaggttatct
       61 ttagttaaaa atgatggtag agatatcaat ataagtggaa caggtctttc agctataggt
      121 atgggtgcta cagacatgat ttctcaatct tcagtatctc taagagagtc aaaagggcaa
      181 atttcagcag ccaatgctga tgctatgggc tttaatgctt ataatggcgg cggcgctaag
      241 caaattattt tcgcttctag tattgcagga tttatgtctc aggctggttc aggcttctct
      301 gctggttcgg gattttcagt aggtagtggt aaaaattatt cagccatttt atcagcttct
      361 atacagatag tatctagcgc agcttctatc agtagcacct atgttgtttc tgctggttca
      421 ggtttctctg ctggttcagg taattctcaa tttgcagctt taagaataag tacagtaagt
      481 gctcatgatg aaactgcagg tgtaactaca cttaagggtg caatggctgt gatggatata
      541 gcagaaactg ctattaccaa tcttgat
//
LOCUS       DARGEY010000224          565 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.225, whole genome shotgun sequence.
ACCESSION   DARGEY010000224 DARGEY010000000
VERSION     DARGEY010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.225"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..451
                     /locus_tag="SF008_001788"
     CDS             <1..451
                     /locus_tag="SF008_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VgrG protein"
                     /protein_id="HEG8234010.1"
                     /translation="KVRVSKNSSEYVGENKDIEISANQNTIIHKDEIRNVKGNKKEVV
                     EGHYNINISDKMQVLSEKEMDYKSKDNILFTSNESIGFESDKNTSMVADNITTIHELK
                     ADSEATIQVGETIINAKPDCVIIKAGGVEVIIDSNGLVVKGGELKAE"
BASE COUNT          235 a           61 c          111 g          158 t
ORIGIN      
        1 taaagtaaga gtatctaaga attctagcga atatgtagga gaaaacaaag atatagaaat
       61 aagtgctaat caaaacacta ttatccataa ggatgagata agaaatgtga agggaaataa
      121 aaaggaggtg gttgagggac attataatat taatatcagc gataaaatgc aagtattaag
      181 cgagaaagag atggattata aaagcaaaga caatattctt tttacaagta atgaatccat
      241 aggatttgaa agtgataaaa atacaagcat ggtagctgat aatatcacaa ctattcatga
      301 gttaaaagcc gatagcgaag cgactataca ggtaggagaa acaattatta atgcaaaacc
      361 tgattgtgtt atcattaaag caggtggagt agaagtaatt atagactcta atggacttgt
      421 ggttaaaggt ggagagctta aagcagagta aaggataaac aataaaaaaa cctttttaca
      481 aacttaaaag attttatata ccttgtggtg tgcttatagc tttgattatt tttataagct
      541 taacttatca ttttttacaa cgacc
//
LOCUS       DARGEY010000225          560 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.226, whole genome shotgun sequence.
ACCESSION   DARGEY010000225 DARGEY010000000
VERSION     DARGEY010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 560)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.226"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            136..552
                     /locus_tag="SF008_001789"
     CDS             136..552
                     /locus_tag="SF008_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEG8234011.1"
                     /translation="MKIKFLNIITILSLSLNADIIISADNLPNVSKEFLQHNFKAPIG
                     IVQKDKNSYEVYLSDGTELEFDIDGAWKEIENKAFPFDLDFLPQNLANIIKSEFPNTK
                     AREIERKINHYKIKLDNDIKILIDFNGTILYKEFDD"
BASE COUNT          243 a           63 c           60 g          194 t
ORIGIN      
        1 ataaaatatt taaaaaaatt aaaaaaattg taagcaaaat ataaaacctt tattttttat
       61 aatattgtct taaaattcac ataaaattca cataaattct ttacaatttt actaaaaaat
      121 aatttaggaa aaatattgaa aattaaattt ttaaatatta ttactatttt aagtttatct
      181 ttaaatgctg atataataat ttctgctgat aatttaccaa atgtttctaa agaattttta
      241 caacataatt tcaaagcgcc tatagggatc gtgcaaaaag acaaaaattc ctatgaagtc
      301 tatcttagcg atggaacaga gcttgaattt gatatagatg gagcttggaa ggaaattgaa
      361 aataaagcct ttccttttga tctagatttt ttacctcaaa atttagccaa tatcatcaaa
      421 agcgaatttc caaatacaaa agctagagaa attgaaagaa aaatcaacca ttataagatt
      481 aaacttgata acgatataaa aattcttata gattttaatg gaactatctt atataaagaa
      541 tttgatgatt aaacatatca
//
LOCUS       DARGEY010000226          546 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.227, whole genome shotgun sequence.
ACCESSION   DARGEY010000226 DARGEY010000000
VERSION     DARGEY010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 546)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 546)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.227"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(129..386)
                     /locus_tag="SF008_001790"
     CDS             complement(129..386)
                     /locus_tag="SF008_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8234012.1"
                     /translation="MCKIIKYLDYTKLNTLEKLYFDLTIMLIVTFLSFLFLVFEFFIY
                     ENIAVFFQDCFLMSVIFIIGITGLFHTCKGLRKYKEILKKV"
BASE COUNT          231 a           59 c           40 g          216 t
ORIGIN      
        1 aaaagtaaat aactattata tattaaaaat tactgatata taatagttat ttttagtaat
       61 taatgttata tgttaaagtg taatacaaaa agattatatt acacaaatct tgataaaagt
      121 ttttatcatt aaaccttttt taaaatctct ttgtattttc ttaaaccttt acaagtatga
      181 aataaacctg tgattccaat aataaaaatc acagacatta aaaaacaatc ttgaaagaaa
      241 acagcaatat tttcataaat gaaaaattca aaaacaagaa ataaaaaact taaaaaagtt
      301 acaattaaca taattgttaa atcaaaatac agcttctcta aagtgttaag tttagtataa
      361 tctaaatatt taataatttt acacattctt ttacctctgc ttcttatgct tattttctat
      421 taaaacatta tatcataatt tctatttcta ttagcaacac tttctgtttg gagtttttta
      481 aaataaaagt tcaaaaattt taatttttga tttaccttat ttaatattat agaatttaat
      541 gaattt
//
LOCUS       DARGEY010000227          537 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.228, whole genome shotgun sequence.
ACCESSION   DARGEY010000227 DARGEY010000000
VERSION     DARGEY010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.228"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>537)
                     /locus_tag="SF008_001791"
     CDS             complement(<1..>537)
                     /locus_tag="SF008_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8234013.1"
                     /translation="SIDIAKEYAKKDERIKIIHNEENLGTFAARNNGVKHSNGEYLMF
                     LDPDDFLELEACEKLILLINTYKICQFSFTQISNGIKLKSVFKDTLKNLKEFKGIYWN
                     IWTLFVKKDFYLKSLEELFLIDKKLLVAEDMLAVFFLINNLKDDEYLQVDLHLYNYVD
                     NSFSITKRRKNKEKIQEC"
BASE COUNT          188 a           84 c           50 g          215 t
ORIGIN      
        1 aacattcctg aattttctct ttattttttc gtcgcttagt aatcgaaaaa gaattatcta
       61 cataattata caaatgcaaa tcaacttgca agtattcatc atcttttaaa ttgtttatca
      121 agaaaaaaac tgcaagcata tcttcggcta caaggagttt tttatctatc aaaaaaagtt
      181 cttctaggga ttttaaataa aaatcctttt ttacaaacag agtccagata ttccaataaa
      241 ttcctttaaa ttcttttaaa tttttaagtg tatctttaaa tactgatttt aatttaattc
      301 cattactaat ctgagtaaaa gaaaattggc atattttata agtatttatt aaaagtatta
      361 atttttcaca agcctcaagc tctaaaaaat catcagggtc taaaaacatc aaatactcac
      421 catttgaatg tttaacacca ttatttcttg ctgcaaaagt acccaaattt tcttcattgt
      481 gaattatttt tattctttca tcttttttgg catattcttt agctatatct atacttt
//
LOCUS       DARGEY010000228          533 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.229, whole genome shotgun sequence.
ACCESSION   DARGEY010000228 DARGEY010000000
VERSION     DARGEY010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 533)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.229"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..406)
                     /locus_tag="SF008_001792"
     CDS             complement(<1..406)
                     /locus_tag="SF008_001792"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8234014.1"
                     /translation="MRYDSFMKLKHVVSSSNIKYYVIKPHNVGFTDTFLSACVVSSFL
                     DSLGLVFKGIVGVDKIDRSEYYQDLYQKINFKNTYNGSYYSIVDNNLDIDNIINEVKN
                     LNKSIDTILLEFNYNHVLRLFELFPIFERKFFF"
BASE COUNT          211 a           74 c           44 g          204 t
ORIGIN      
        1 taaaaaaaaa tttcctttca aaaattggga ataattcaaa cagtctcaac acatgattat
       61 aattaaactc taaaagtatt gtatcaatag atttatttaa atttttaacc tcattgataa
      121 tattatcaat atctaagtta ttatccacaa tagaataata gcttccatta tatgtatttt
      181 taaagtttat cttttgatat aaatcttgat aatattcgct tctatcaatt ttatctactc
      241 caacaatacc cttaaaaact aaacccaaag aatctaaaaa cgacgagaca acacaagcac
      301 ttaaaaaggt atctgtaaaa cctacattat gtggttttat tacataatat tttatattac
      361 tgctagatac aacatgtttt agtttcataa aactatcata acgcatattt tcctccttat
      421 aaatatattt ttcaagctta aaataatatc tatttttatt attggatatt ttactagaga
      481 agacaattat atttgtaaaa gataaatttg gatattcttt agcataatat tta
//
LOCUS       DARGEY010000229          511 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.230, whole genome shotgun sequence.
ACCESSION   DARGEY010000229 DARGEY010000000
VERSION     DARGEY010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.230"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>511
                     /locus_tag="SF008_001793"
     CDS             <1..>511
                     /locus_tag="SF008_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ComEC family DNA internalization-related
                     competence protein"
                     /protein_id="HEG8234015.1"
                     /translation="NQKHYLIDNALLTHQYIKYNKKNKKYWVLKLQTENFTFYTTSFK
                     DLNLSKNQFLSLRIITHNINFKDYLSKSFYAPSYDFEKLKEKEYNPIISYFLNQHTNE
                     KIKEFYGALFFALPISLELRNDVNYYGIAHLIAISGYHIGLLFSLIFFILAPIYSFFQ
                     KRYFPYRNLR"
BASE COUNT          200 a           77 c           52 g          182 t
ORIGIN      
        1 aaaccaaaaa cattacctta tagacaacgc tctattaacg caccaatata taaaatataa
       61 taaaaaaaat aaaaaatact gggttttaaa gttacaaact gaaaacttca ctttttatac
      121 tacaagtttt aaggatttaa atttaagcaa gaatcaattt ttaagcctta gaattatcac
      181 ccataatatt aactttaaag actatctgag taaaagtttt tacgcacctt cttatgattt
      241 tgaaaaatta aaagaaaaag aatacaatcc cattatatct tacttcttaa atcaacatac
      301 aaatgaaaag attaaagaat tttatggtgc tttatttttt gcactgccca tatctttaga
      361 gcttagaaac gatgtaaatt actacggtat agcacacctt atagcaatta gcggttatca
      421 cataggctta ctttttagtt taattttctt tattttagct ccaatttata gttttttcca
      481 aaaaagatat tttccttata gaaatttacg t
//
LOCUS       DARGEY010000230          498 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.231, whole genome shotgun sequence.
ACCESSION   DARGEY010000230 DARGEY010000000
VERSION     DARGEY010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.231"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            89..268
                     /locus_tag="SF008_001794"
     CDS             89..268
                     /locus_tag="SF008_001794"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8234016.1"
                     /translation="MHLIYQDNIDIHMEENYISRKINTKEKVNILKFIHNGIHLDTVF
                     NLAYSNDFVNYNLGC"
BASE COUNT          206 a           42 c           61 g          189 t
ORIGIN      
        1 tgtaactaat tttgttattc caaaaaataa agaaattgta atcgataaat tgaataaatg
       61 tgtaaaaatt attggaaaaa ataaaatatt gcatttaata tatcaagata atattgatat
      121 acatatggaa gaaaattata tatctagaaa aatcaataca aaagaaaaag taaatatttt
      181 aaaatttatt cataatggta tacatttgga tactgttttt aatttagctt attctaatga
      241 ttttgtgaat tataatttag gttgttaatc atgtttatta attatagaaa tgaacgaatt
      301 gagtttaatt tgccatttga ttgggctaaa aatccatata aaattagctc atatccacat
      361 catttaatgt ctttaagatg gataaatgag gagaattttt ccaaagagca aataaaaatc
      421 attatactag atttttatga ttttcatttt gttaaaaagg tacttcatcc ttattatgtt
      481 aaaatacaag ctgatcat
//
LOCUS       DARGEY010000231          491 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.232, whole genome shotgun sequence.
ACCESSION   DARGEY010000231 DARGEY010000000
VERSION     DARGEY010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 491)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.232"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>491
                     /locus_tag="SF008_001795"
     CDS             <1..>491
                     /locus_tag="SF008_001795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8234017.1"
                     /translation="ISKINFFGKINLISKEIATGLYYKIIEKNKKLLLCQDGPTKIFD
                     INKKVVFDDSNGDNIGSQINSYVTINSQFGRNYLIFSTWRNTKNYPRSCLYFIRNETK
                     RLIKKYDNKKYYDELKWSGYKSYRTGHISCNEKIIFCNKYDHPVIIEFSNYFYKNLID
                     NIVS"
BASE COUNT          207 a           47 c           66 g          171 t
ORIGIN      
        1 atatcaaaaa ttaacttttt tggtaaaatt aacttgattt ctaaggagat tgctactggt
       61 ttatattata aaataataga aaagaataaa aaattactgt tgtgccaaga cggtcctact
      121 aaaatttttg atataaataa aaaagttgtt tttgatgatt ccaatggtga taatatagga
      181 tctcaaatta attcatatgt aactataaat agtcaatttg gtagaaacta cttaatattt
      241 agcacttgga gaaatacaaa aaactatcca agatcatgtt tatatttcat tagaaacgaa
      301 actaaaagac ttataaaaaa atatgataat aagaaatatt atgatgaatt aaagtggagc
      361 ggatacaaaa gctatagaac tggacatatt agttgcaatg agaaaataat tttttgcaat
      421 aagtatgatc accctgtaat tatcgaattt tcaaattatt tttataaaaa tttaattgat
      481 aatattgttt c
//
LOCUS       DARGEY010000232          483 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.233, whole genome shotgun sequence.
ACCESSION   DARGEY010000232 DARGEY010000000
VERSION     DARGEY010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.233"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..474)
                     /locus_tag="SF008_001796"
     CDS             complement(<1..474)
                     /locus_tag="SF008_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VgrG protein"
                     /protein_id="HEG8234018.1"
                     /translation="MIISFLDDDIDKPYVSGSLYNGANPSLVNLPFNDHQTSLSSKTI
                     GVNEEGYNELTLSNIKDKEQIYLKAQKDYDELVQHNFTQRILNDKDSIVDGIYNERIK
                     KVHTQTIDLAKNVNVGGEYLTNVGLSKDTIVGLSNTLNVGVDNKVRVSKNSSEYVG"
BASE COUNT          151 a           84 c           54 g          194 t
ORIGIN      
        1 tcctacatat tcgctagaat tcttagatac tcttacttta ttatctactc ctacatttaa
       61 ggtattgctt aatcctacta tggtatcttt agataagcct acattagtta agtattctcc
      121 tcctacattg acatttttag ctaagtctat ggtttgagta tgaacctttt taatcctttc
      181 attataaatt ccatccacta tagaatcttt atcatttaaa attctttgag tgaaattatg
      241 ttgtactaat tcatcataat ccttttgcgc ttttaaataa atttgttctt tatcttttat
      301 atttgagagg gtaagttcat tataaccttc ttcattaaca cctatggttt tagaagaaag
      361 agaagtttgg tgatcattaa aaggaagatt tactaaactt ggattagccc cattatacaa
      421 acttccactt acataaggtt tatctatatc atcatctaaa aaagaaataa tcacttcatc
      481 tcc
//
LOCUS       DARGEY010000233          469 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.234, whole genome shotgun sequence.
ACCESSION   DARGEY010000233 DARGEY010000000
VERSION     DARGEY010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.234"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            49..450
                     /locus_tag="SF008_001797"
     CDS             49..450
                     /locus_tag="SF008_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG8234019.1"
                     /translation="MIYNEKIISMNNDLLDHQHKELFEISKKLSLMNQCHVGTKELKI
                     VLRELLIMINRHFSDEEAFMRKIEYPYINHHTRIHRKIILEIEEIIISEAKFVNIMTE
                     KLNLVVQDFIFKHTAKEDSKIVKYYEEKFKK"
BASE COUNT          205 a           57 c           56 g          151 t
ORIGIN      
        1 cattataatc cgctctcgaa aaatataaat ataaaagtac tcaaaaccat gatttataat
       61 gaaaaaatta tttcaatgaa taatgatctt ttagatcatc aacataaaga actttttgaa
      121 atttctaaaa aactctcttt aatgaaccaa tgtcatgttg gaacaaaaga attaaaaatt
      181 gtcttaagag agttgttgat aatgatcaat agacattttt cagatgaaga agcctttatg
      241 agaaaaatag aatatcctta tatcaaccat catacaagaa ttcatagaaa aattatctta
      301 gaaattgaag aaattatcat cagtgaagct aaatttgtaa atataatgac cgaaaaatta
      361 aatctcgttg ttcaagattt tatctttaaa catacagcca aagaagattc aaagatagta
      421 aagtattacg aagaaaaatt taagaaatag tatttctcat ttttgctat
//
LOCUS       DARGEY010000234          453 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.235, whole genome shotgun sequence.
ACCESSION   DARGEY010000234 DARGEY010000000
VERSION     DARGEY010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 453)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.235"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>453
                     /locus_tag="SF008_001798"
     CDS             <1..>453
                     /locus_tag="SF008_001798"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8234020.1"
                     /translation="EELYEYVKNDKQAYFGMLDIRDFYGENYLLDLVLTLKYSKFNAF
                     GKYSFYEFKDSVISLENKDYEYKKVDKLFITSSFVKIEFLSKDMLSDFINGQFLYQIE
                     DMFAIDCFNYCKNGSILTKEQQEYVSSIDKMYSGINIKELNMTSKFKGV"
BASE COUNT          179 a           30 c           72 g          172 t
ORIGIN      
        1 agaagaatta tatgaatatg tgaaaaatga caaacaagca tattttggga tgttggatat
       61 tagagatttt tatggtgaaa attatttgct agatttggtt ttaactttaa aatactctaa
      121 atttaatgct tttggaaaat atagttttta tgaatttaaa gatagtgtaa taagtttgga
      181 aaataaagat tatgaatata aaaaagtaga taaacttttt attacttcat cttttgtaaa
      241 aatagaattt cttagtaaag atatgttatc tgattttatc aatgggcaat ttttatatca
      301 aatcgaagat atgtttgcta ttgattgttt taattattgt aaaaatggtt ctattcttac
      361 gaaagaacag caagaatatg tatctagtat agataaaatg tattctggga taaacattaa
      421 agaattaaat atgacatcaa aattcaaagg ggt
//
LOCUS       DARGEY010000235          449 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.236, whole genome shotgun sequence.
ACCESSION   DARGEY010000235 DARGEY010000000
VERSION     DARGEY010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 449)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.236"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(98..448)
                     /locus_tag="SF008_001799"
     CDS             complement(98..448)
                     /locus_tag="SF008_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4299 family protein"
                     /protein_id="HEG8234021.1"
                     /translation="MEDLKLLQRRWEEAYEAMPKLYETPDGLIINFTLSEDTDTILFK
                     KPWENFELDDEDKETKWRLSFFSISKDEPLGYLEYKEALEKLQDFSLIQSEERILIRA
                     MSLEELESLELKGW"
BASE COUNT          145 a           85 c           45 g          174 t
ORIGIN      
        1 aaaattttat ctacaccttt tttcatattt acaatatcta aattttcatc agataaaaat
       61 tctataagtt tatttaaaaa tataggttga ggaagcatta ccacccttta agctctaagc
      121 tttcaagctc ttctaaactc attgctctaa ttaaaatcct ttcttctgat tgaattaaag
      181 aaaaatcttg caatttctct aaagcttctt tatactctaa ataccccaaa ggctcatctt
      241 tgctaatgct aaaaaaactc agcctccatt tggtttcttt atcttcatca tctagttcaa
      301 aattttccca aggtttttta aaaagaatag tatctgtatc ttcacttagg gtgaaattta
      361 ttattaaccc atctggtgtt tcataaagtt taggcatagc ttcataagct tcttcccaac
      421 gtctttgtaa aagttttaaa tcttccata
//
LOCUS       DARGEY010000236          447 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.237, whole genome shotgun sequence.
ACCESSION   DARGEY010000236 DARGEY010000000
VERSION     DARGEY010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.237"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..423)
                     /locus_tag="SF008_001800"
     CDS             complement(<1..423)
                     /locus_tag="SF008_001800"
                     /inference="COORDINATES: protein motif:HMM:NF019552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heparinase II/III family protein"
                     /protein_id="HEG8234022.1"
                     /translation="MKPDKDFLFLKNSGYAIVKDFDNKLNLVFKCKHISNYHRHDDDL
                     NFTLFYDNEEWFIDGGLYQYSEKDEFRKYLRSHLSHNLTYPKNFKAHRNLQKSLKTHI
                     NNLSSENIYKFEGYSYMFDGFENYRSIEYDKNKLIFTII"
BASE COUNT          171 a           64 c           34 g          178 t
ORIGIN      
        1 aataatagta aaaatcaact tatttttatc atattctata cttctataat tttcaaaacc
       61 atcaaacata taagaatatc cttcaaattt ataaatattt tcactagata agttatttat
      121 atgtgttttt aaggattttt gcaaattcct atgagcctta aagtttttag gatatgttaa
      181 attatgagaa agatgagatc tcaaatattt tctaaattca tctttttcag aatattgata
      241 taaaccacca tcaataaacc attcttcatt atcataaaat aaagtgaaat ttaaatcatc
      301 atcatgtcga tgataattgc ttatatgttt acatttaaaa actaaattta atttattatc
      361 aaaatccttt acaattgcat atcccgaatt ctttaaaaat aaaaaatctt tatctggctt
      421 caagccttct cttccattac ttattaa
//
LOCUS       DARGEY010000237          438 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.238, whole genome shotgun sequence.
ACCESSION   DARGEY010000237 DARGEY010000000
VERSION     DARGEY010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..438
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.238"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>438)
                     /locus_tag="SF008_001801"
     CDS             complement(<1..>438)
                     /locus_tag="SF008_001801"
                     /inference="COORDINATES: protein motif:HMM:NF028199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8234023.1"
                     /translation="NYISEDQFLLLQKILAIDVNKLLMDEFYSKNTNHGLDQSLSLYK
                     ASFFLEVDNILDIRNVAIERINSELKFAFCDDGGHKENSPAYLYYGVSQVLRALDIGY
                     KYEKENTKIYFPLDLLKKSCLVLGYFVQFNEKMPLIGDTVEFKI"
BASE COUNT          170 a           69 c           39 g          160 t
ORIGIN      
        1 tattttaaat tcaacagtat caccaataag aggcattttt tcgttaaatt gaacaaaata
       61 tcctaaaacc aaacaagatt ttttcaacaa atctaatgga aaatatattt tagtattttc
      121 tttttcgtat ttataaccaa tatctaaagc tcttaaaact tgagaaacgc cataatataa
      181 ataggctgga ctattttcct tatgaccacc atcgtcgcaa aaagcaaatt tgagctcact
      241 gttaattctt tctattgcaa catttcttat atccaatata ttatcaactt ctaaaaaaaa
      301 agatgcttta tataaagata aactttgatc taatccatga tttgtatttt tagaataaaa
      361 ctcatccatt aaaagtttat taacatcaat tgctaaaatt ttttgtaaaa gcaaaaactg
      421 atcttcactt atataatt
//
LOCUS       DARGEY010000238          420 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.239, whole genome shotgun sequence.
ACCESSION   DARGEY010000238 DARGEY010000000
VERSION     DARGEY010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 420)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.239"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            28..>420
                     /locus_tag="SF008_001802"
     CDS             28..>420
                     /locus_tag="SF008_001802"
                     /inference="COORDINATES: protein motif:HMM:NF024914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HEG8234024.1"
                     /translation="MFARRAFELIACNTFVVSNFSRALRNFFGDLVISSDNVNELKDK
                     LKLACEDEMYCKKIKLNALRKVMKEHTYTDRLKFIASVVYKKQFEYKYKFYLLVYVNS
                     QEEYIKALDIFNFQKENKEACLLIYSDKE"
BASE COUNT          174 a           33 c           67 g          146 t
ORIGIN      
        1 ataaatactg ttaagcaatc tcaaacaatg tttgctagaa gagcttttga acttatagca
       61 tgtaatacat ttgttgtaag taatttttct agagctttaa gaaatttttt cggagattta
      121 gtgatatcat ctgacaatgt aaatgagtta aaagataaat taaagttagc atgtgaagat
      181 gaaatgtatt gcaagaaaat aaaattaaat gctttaagaa aagtaatgaa agagcataca
      241 tatacagata gattaaaatt tatagcttct gttgtttata aaaaacaatt tgaatataag
      301 tacaaatttt atttattggt gtatgtaaat tcgcaagaag aatatattaa agcattggat
      361 atttttaatt tccaaaaaga aaacaaagaa gcttgtttgt tgatttatag tgataaagaa
//
LOCUS       DARGEY010000239          400 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.240, whole genome shotgun sequence.
ACCESSION   DARGEY010000239 DARGEY010000000
VERSION     DARGEY010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 400)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.240"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            110..292
                     /locus_tag="SF008_001803"
     CDS             110..292
                     /locus_tag="SF008_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8234025.1"
                     /translation="MKKVVLISALLGAFAANVFAADTPSDVNQTHTKAHHSKAKADKK
                     HEAKTHKKTKEQTPAQ"
BASE COUNT          179 a           56 c           42 g          123 t
ORIGIN      
        1 atataaaaaa ttatattttt ttgaaatatt tttacaaaaa atatctattt gttgattttt
       61 aataattaca attaatttgc aactaaaaat tattcataag gaggaaaata tgaaaaaagt
      121 tgtactaatc tcagcattac taggtgcttt cgcagctaat gtttttgcag ctgatactcc
      181 aagcgatgta aatcaaacac atacaaaagc tcatcattca aaagctaaag ctgataaaaa
      241 acatgaagct aaaactcaca aaaaaacaaa agagcaaaca ccagctcaat aatgcccagc
      301 cttgatataa gtctataata gacttatatc aaaagctatt cgtattctac aaaataaatt
      361 attaatattt attaaatttc aatagaaaaa atgaaaaaat
//
LOCUS       DARGEY010000240          386 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.241, whole genome shotgun sequence.
ACCESSION   DARGEY010000240 DARGEY010000000
VERSION     DARGEY010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.241"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
BASE COUNT          159 a           55 c           45 g          127 t
ORIGIN      
        1 gctttatctt taaaatcaag cttagtgata aaatctttac tataaagtct aaaatccaaa
       61 ccataaggag tgaatttttg atagtcttta aagattttca tataccacat acacactcgc
      121 aattaataaa aagatattac acacaaaccc tataagccaa cttaattttt tgcgtttttc
      181 tcctgtgcta taacatttaa ataaataagc ttgtaataaa caaggaaata tgataaatgt
      241 gattactaaa aaaaacatag ttgcaaaggt taaaaattta aaataattac gcactctata
      301 ttcttgcggt gataattttt caatttctgg aggatcaagt aatacaagcg atttataaaa
      361 ttcaagatca tagctaagat aaaata
//
LOCUS       DARGEY010000241          381 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.242, whole genome shotgun sequence.
ACCESSION   DARGEY010000241 DARGEY010000000
VERSION     DARGEY010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.242"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            125..328
                     /locus_tag="SF008_001804"
     CDS             125..328
                     /locus_tag="SF008_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8234026.1"
                     /translation="MLLNTPCRGIVDTNFESKRISITSTLKFQEKKEKVEAKAEKEEA
                     NKDNSNSTNTNTNKKDKLLDISA"
BASE COUNT          174 a           45 c           46 g          116 t
ORIGIN      
        1 tacttttaga agcaaatgaa atagataaaa ttttacttca ataaatttaa gttttatctt
       61 attttataca atttttaata taatctaaaa ttataatttt aaatgagaaa tcaggagctt
      121 gctaatgtta cttaacacgc cttgcagggg aatagtagat acaaattttg aaagcaaaag
      181 aattagcata acttcaactt taaaatttca agaaaaaaaa gaaaaagtag aagctaaggc
      241 tgagaaagaa gaagcaaata aagacaatag caattctaca aacacaaata ccaataaaaa
      301 agataaactt ttggatatat ctgcttagtc taaaatatac tataactata tctccttaaa
      361 gaatacgcaa taaatgattt t
//
LOCUS       DARGEY010000242          371 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.243, whole genome shotgun sequence.
ACCESSION   DARGEY010000242 DARGEY010000000
VERSION     DARGEY010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.243"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>371
                     /locus_tag="SF008_001805"
     CDS             <1..>371
                     /locus_tag="SF008_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEG8234027.1"
                     /translation="SKFIAYLIDINKDHYQKNFAKVFLEKLGKSLVNTKFENLNIEDI
                     KSVETEACIKDNRRIDILITLSDKRYIIIENKIYAKDQKNQLKDYINFVRKNIKNIKD
                     CYKNILTIYLHQDECASPSDY"
BASE COUNT          178 a           25 c           50 g          118 t
ORIGIN      
        1 attctaaatt tatagcttat ttaattgata taaataagga tcattatcaa aaaaattttg
       61 caaaggtatt tttagaaaaa cttggtaaga gtttagtaaa tacgaaattt gaaaatttaa
      121 acatagaaga tataaaaagc gtagaaacag aagcctgcat aaaagataat agaaggatag
      181 atattttaat aacattaagt gataaaagat atattataat agaaaataaa atttatgcaa
      241 aagatcaaaa aaatcaattg aaagattata ttaattttgt aagaaaaaat atcaaaaata
      301 taaaagattg ttataaaaac atattgacta tatatttgca tcaagatgag tgtgctagtc
      361 ctagtgatta t
//
LOCUS       DARGEY010000243          361 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.244, whole genome shotgun sequence.
ACCESSION   DARGEY010000243 DARGEY010000000
VERSION     DARGEY010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.244"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>361)
                     /locus_tag="SF008_001806"
     CDS             complement(<1..>361)
                     /locus_tag="SF008_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002797680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8234028.1"
                     /translation="NKDKEALKALSFMQNFIPACFFSYQIIGDSKAIPKNVLEDLKNR
                     YGYEGKNYKSIFKKEVYINCNCLERLNFSHCEFESKVSLRFLKDNKYKEFHNGVNFSN
                     CIFKNEVDFSYFVSGAP"
BASE COUNT          137 a           52 c           36 g          136 t
ORIGIN      
        1 aatggtgcac ctgatacaaa ataactgaaa tcaacttcat ttttaaagat acaatttgaa
       61 aaattaactc cattgtgaaa ttctttatat ttattatctt ttaaaaaacg caaagatact
      121 ttggattcaa attcgcaatg agaaaaattt aatctttcta agcaattaca atttatataa
      181 acttctttct taaaaatact tttataattt ttcccttcat aaccatatct attttttaaa
      241 tcctcaagaa catttttagg aatagctttg gaatctccta taatttgata agaaaaaaaa
      301 caagcaggaa taaaattttg cataaatgag agcgccttta gtgcttcttt atctttattg
      361 t
//
LOCUS       DARGEY010000244          332 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.245, whole genome shotgun sequence.
ACCESSION   DARGEY010000244 DARGEY010000000
VERSION     DARGEY010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 332)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 332)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.245"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>332)
                     /locus_tag="SF008_001807"
     CDS             complement(<1..>332)
                     /locus_tag="SF008_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEG8234029.1"
                     /translation="LLNIWTFFAMVLPVLYFFPLISYQQILGIILSGIFVIFYPLVLF
                     LHLINYGDLLNFILDEFFKFKIYGTNIHIPFWIFISYLIASLISVRFKYLAFLCIFAN
                     FIPFIMIV"
BASE COUNT          168 a           40 c           41 g           83 t
ORIGIN      
        1 tcacaatcat aatgaaggga ataaaattcg caaaaataca aagaaaagct agatatttaa
       61 atcgcacaga gattaaagaa gcaataagat aacttataaa aatccaaaat gggatatgga
      121 tattagttcc ataaatttta aatttaaaaa attcatctaa gataaaattg agcaaatctc
      181 catagtttat aagatgcaaa aataatacta aaggataaaa tattacaaaa attccactca
      241 aaataatacc taaaatttgt tggtagctta taagtggaaa aaaataaagc acaggtaaaa
      301 ccatagcaaa aaaagtccaa atattaagca aa
//
LOCUS       DARGEY010000245          324 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.246, whole genome shotgun sequence.
ACCESSION   DARGEY010000245 DARGEY010000000
VERSION     DARGEY010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 324)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 324)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.246"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            156..>324
                     /locus_tag="SF008_001808"
     CDS             156..>324
                     /locus_tag="SF008_001808"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8234030.1"
                     /translation="MHFACTCNWNSDAHKQNDELHFCLQLGDDIIFDDCGYTDFLSIN
                     QYNELASEFSHS"
BASE COUNT          107 a           35 c           51 g          131 t
ORIGIN      
        1 taagagagcc atctgttgaa tttttatcta aaatcttttt tccaaataaa aaaataatgg
       61 atataaacga aattctctat ccgtattctg ttatgaatgg tagttattca agtgaatctt
      121 atttcatata taggaatgat tcttttggag aatatgtgca ctttgcatgt acttgtaatt
      181 ggaattctga tgctcataaa caaaatgatg aattacattt ttgtttgcaa ttgggcgatg
      241 atattatttt tgatgattgt ggttatacag attttttatc tataaatcaa tataatgaat
      301 tagctagcga atttagtcat tcta
//
LOCUS       DARGEY010000246          311 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.247, whole genome shotgun sequence.
ACCESSION   DARGEY010000246 DARGEY010000000
VERSION     DARGEY010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 311)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 311)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.247"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..279
                     /locus_tag="SF008_001809"
     CDS             <1..279
                     /locus_tag="SF008_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8234031.1"
                     /translation="LDINSQKEKIKILFIINEVPKFLKSIYKECEFKEYGLANYLEFD
                     EIWDFYENNIRYFTILTPMGANKIKLRLENTQNSEKELNIIEVNLDKK"
BASE COUNT          141 a           26 c           38 g          106 t
ORIGIN      
        1 ttggatatta attctcaaaa agaaaaaatc aaaatacttt ttattattaa tgaagtgcca
       61 aaatttttaa aatcaatcta taaagaatgt gagtttaaag aatatggatt agcaaattat
      121 ttggaatttg atgaaatttg ggatttttat gaaaataata ttagatattt tactatttta
      181 actcccatgg gtgcaaataa aataaaattg cgtttagaaa atacacaaaa cagcgaaaaa
      241 gaactcaata tcatagaagt aaatttagat aaaaaataga ttttaataac aaaaataagc
      301 aatttctttt t
//
LOCUS       DARGEY010000247          288 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.249, whole genome shotgun sequence.
ACCESSION   DARGEY010000247 DARGEY010000000
VERSION     DARGEY010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 288)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 288)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..288
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.249"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
BASE COUNT          125 a           51 c           27 g           85 t
ORIGIN      
        1 caataagaac gcttagagct ataagataaa ttcttgcaac agtaaaacta gcaataaaca
       61 aaatcaaacc ccaaaaaata gaaagtgtaa tgctatctcc catttaaact cctgtattat
      121 aaagcacatt ataagcttta tctttaaaat caagtttagc aataaaatct ttactataaa
      181 gtttaaagtc caaaccataa ggagtgaatt tttgatagtc tttaaagatt ttcatatacc
      241 acatacacac tcgcaattaa tataataata ttacacacaa accctata
//
LOCUS       DARGEY010000248          257 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.denovo.251, whole genome shotgun sequence.
ACCESSION   DARGEY010000248 DARGEY010000000
VERSION     DARGEY010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 257)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 257)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..257
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.denovo.251"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
BASE COUNT          110 a           16 c           36 g           95 t
ORIGIN      
        1 aagaaaaaaa ctaataataa gtctaaaata cttagttcaa gggcaaattt atttggattt
       61 aaagtggtaa tgcaacatag cagaataaaa aaatgtgata tttgtagaat aattaatttt
      121 aacagtaaat catatattct cgaaataaat gacgaaatag ttgttgagaa tgatttaatt
      181 ggtgaaataa ttaattttag ttttgtttta tcacctgata taaatatttt atatatagga
      241 gataaatata ttttatt
//
LOCUS       DARGEY010000249         1737 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-LE
            SAMN11268394-rid18062023.guided.172, whole genome shotgun sequence.
ACCESSION   DARGEY010000249 DARGEY010000000
VERSION     DARGEY010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268394
            Sequence Read Archive: SRR8796634
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741578.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741578.1
            Genome Coverage       :: 56x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:19:14
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,811
            CDSs (total)                      :: 1,773
            Genes (coding)                    :: 1,708
            CDSs (with protein)               :: 1,708
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 50 of 65
            Pseudo Genes (incomplete)         :: 14 of 65
            Pseudo Genes (internal stop)      :: 13 of 65
            Pseudo Genes (multiple problems)  :: 12 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268394-rid18062023.guided.172"
                     /isolate="MattSeq37extra_B2-LE"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            17..778
                     /locus_tag="SF008_001810"
     CDS             17..778
                     /locus_tag="SF008_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-461"
                     /protein_id="HEG8234032.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFLRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKS"
     gene            complement(876..>1737)
                     /locus_tag="SF008_001811"
     CDS             complement(876..>1737)
                     /locus_tag="SF008_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HEG8234033.1"
                     /translation="PMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTLLKIIAGLI
                     KPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIAYAASSKAK
                     VSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSALDFKMRAN
                     LQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEFFTHSNISA
                     KLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDTLLLSIKAF
                     NPIIVGKLDK"
BASE COUNT          611 a          236 c          257 g          633 t
ORIGIN      
        1 aatagaaaga tattttatga aaaaaataac tttattttta cttttcttaa atttagtgtt
       61 tgggcaagat aagatattaa ataattggtt taaagagtat aatacaagcg gcacttttgt
      121 tttttatgat ggaaaaactt gggcgagtaa cgacttttta agggctatgg agactttctc
      181 tcccgcttcc acttttaaaa tttttaatgc tctaattgca cttgatagtg gtgtgataaa
      241 aactaaaaaa gaaatttttt atcactatag aggtgaaaaa gtatttttat cttcttgggc
      301 gcaagatatg aatttaagtt cagctataaa atattctaat gttcttgctt ttaaagaagt
      361 ggcaagaaga attggtatca aaactatgca agaatattta aacaagcttc attatggtaa
      421 tgctaaaatt tccaagatcg atactttttg gcttgacaac tcactaaaaa taagcgctaa
      481 agaacaagca attttgcttt ttagactttc acaaaatagc ttaccttttt ctcaagaagc
      541 aatgaatagt gttaaggaaa tgatttattt aaaaaatatg gaaaatttag agctttttgg
      601 aaaaacaggt tttaatgatg agcaaaaaat tgcttggatt gtaggttttg tgtatttaaa
      661 agatgaaaat aaatataagg ctttcgcgct aaatttagat attgataaat ttgaagattt
      721 atataaaaga gaaaaaattt tagaaaaata tttagatgaa cttgtaaaaa aaagttaaaa
      781 atgatggcta gtgagtattt cgtaaaatgc aaaaatactt aattgtatga tttgcgtaca
      841 cttaaagtac tcattaaaaa attaaatttt tgctcttatt tatcaagttt tcctacgatg
      901 atagggttaa aggcttttat ggatagcaaa agcgtatcgc cgatttttac atcttgataa
      961 gcttttagaa attcctcttc actaagagtg attttaataa tatcttgatt taaaagcaag
     1021 gttaaaacca ctaaaatatc acttttttta atttctagca aagttgcact taagcgtaat
     1081 tttgcgctga tatttgaatg agtaaaaaat tcatttttag gaaaatcttt aataattttt
     1141 ccgtttttaa gctctaaaat tctatgactt aacttataaa tttcagctag atcatgactt
     1201 accaataaag tacttatttt aaaatactct aaaatcttgg ttaattcatc ttgtaaattg
     1261 gcacgcattt taaaatccaa agcactcaaa ggttcatcta aaagcaagat ttttggttct
     1321 cttgctaaag ctcttgctaa agctactctt tgtgcctgcc ccccacttaa atgtttagga
     1381 taaattttag ctaaattttc aagcttcatt aaggctaaaa gctcgctaac ctttgcttta
     1441 gaactagcgg cataggcgat gttttctttt atattcatat ttggaaaaag cgcataatct
     1501 tgaaaaacaa aaccaatttt tcttttttgt aaagctaaac taaaattttt tgaagaatca
     1561 aaccaaagtt cattatctac ttctatacgc cccaatttag gctttataag tcccgctatg
     1621 atttttaaaa gagtggtttt tcctgctcca ctttcgccaa aaagtgcagt aatttttcct
     1681 gattctatat cttttttaaa atttaaatcc agtcttcctt tagcggtatt catagga
//
